graph_matching 0.0.1
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- checksums.yaml +7 -0
- data/.gitignore +20 -0
- data/.rubocop.yml +112 -0
- data/.ruby-version +1 -0
- data/.travis.yml +9 -0
- data/Gemfile +4 -0
- data/LICENSE.txt +22 -0
- data/README.md +205 -0
- data/Rakefile +9 -0
- data/benchmark/mcm_bipartite/complete_bigraphs/benchmark.rb +33 -0
- data/benchmark/mcm_bipartite/complete_bigraphs/compare.gnuplot +19 -0
- data/benchmark/mcm_bipartite/complete_bigraphs/edges_times_vertexes.data +500 -0
- data/benchmark/mcm_bipartite/complete_bigraphs/plot.gnuplot +21 -0
- data/benchmark/mcm_bipartite/complete_bigraphs/plot.png +0 -0
- data/benchmark/mcm_bipartite/complete_bigraphs/time.data +499 -0
- data/benchmark/mcm_general/complete_graphs/benchmark.rb +30 -0
- data/benchmark/mcm_general/complete_graphs/plot.gnuplot +19 -0
- data/benchmark/mcm_general/complete_graphs/plot.png +0 -0
- data/benchmark/mcm_general/complete_graphs/time.data +499 -0
- data/benchmark/mcm_general/complete_graphs/v_cubed.data +500 -0
- data/benchmark/mwm_bipartite/complete_bigraphs/benchmark.rb +43 -0
- data/benchmark/mwm_bipartite/complete_bigraphs/nmN.data +499 -0
- data/benchmark/mwm_bipartite/complete_bigraphs/nmN.xlsx +0 -0
- data/benchmark/mwm_bipartite/complete_bigraphs/plot.gnuplot +22 -0
- data/benchmark/mwm_bipartite/complete_bigraphs/plot.png +0 -0
- data/benchmark/mwm_bipartite/complete_bigraphs/time.data +299 -0
- data/benchmark/mwm_bipartite/misc/calc_d2/benchmark.rb +29 -0
- data/benchmark/mwm_general/complete_graphs/benchmark.rb +32 -0
- data/benchmark/mwm_general/complete_graphs/compare.gnuplot +19 -0
- data/benchmark/mwm_general/complete_graphs/mn_log_n.data +299 -0
- data/benchmark/mwm_general/complete_graphs/mn_log_n.xlsx +0 -0
- data/benchmark/mwm_general/complete_graphs/plot.gnuplot +22 -0
- data/benchmark/mwm_general/complete_graphs/plot.png +0 -0
- data/benchmark/mwm_general/complete_graphs/time.data +299 -0
- data/benchmark/mwm_general/incomplete_graphs/benchmark.rb +39 -0
- data/benchmark/mwm_general/incomplete_graphs/plot.gnuplot +22 -0
- data/benchmark/mwm_general/incomplete_graphs/plot.png +0 -0
- data/benchmark/mwm_general/incomplete_graphs/time_10_pct.data +299 -0
- data/benchmark/mwm_general/incomplete_graphs/time_20_pct.data +299 -0
- data/benchmark/mwm_general/incomplete_graphs/time_30_pct.data +299 -0
- data/graph_matching.gemspec +35 -0
- data/lib/graph_matching.rb +15 -0
- data/lib/graph_matching/algorithm/matching_algorithm.rb +23 -0
- data/lib/graph_matching/algorithm/mcm_bipartite.rb +118 -0
- data/lib/graph_matching/algorithm/mcm_general.rb +289 -0
- data/lib/graph_matching/algorithm/mwm_bipartite.rb +147 -0
- data/lib/graph_matching/algorithm/mwm_general.rb +1086 -0
- data/lib/graph_matching/algorithm/mwmg_delta_assertions.rb +94 -0
- data/lib/graph_matching/assertion.rb +41 -0
- data/lib/graph_matching/core_ext/set.rb +36 -0
- data/lib/graph_matching/directed_edge_set.rb +31 -0
- data/lib/graph_matching/errors.rb +23 -0
- data/lib/graph_matching/graph/bigraph.rb +37 -0
- data/lib/graph_matching/graph/graph.rb +63 -0
- data/lib/graph_matching/graph/weighted.rb +112 -0
- data/lib/graph_matching/graph/weighted_bigraph.rb +17 -0
- data/lib/graph_matching/graph/weighted_graph.rb +17 -0
- data/lib/graph_matching/integer_vertexes.rb +29 -0
- data/lib/graph_matching/matching.rb +120 -0
- data/lib/graph_matching/ordered_set.rb +59 -0
- data/lib/graph_matching/version.rb +6 -0
- data/lib/graph_matching/visualize.rb +93 -0
- data/profile/mcm_bipartite/compare.sh +15 -0
- data/profile/mcm_bipartite/publish.sh +12 -0
- data/profile/mwm_general/compare.sh +15 -0
- data/profile/mwm_general/profile.rb +28 -0
- data/profile/mwm_general/publish.sh +12 -0
- data/research/1965_edmonds.pdf +0 -0
- data/research/1975_even_kariv.pdf +0 -0
- data/research/1976_gabow.pdf +0 -0
- data/research/1980_micali_vazirani.pdf +0 -0
- data/research/1985_gabow.pdf +0 -0
- data/research/2002_tarjan.pdf +0 -0
- data/research/2013_zwick.pdf +0 -0
- data/research/examples/unweighted_general/1.txt +86 -0
- data/research/goodwin.pdf +0 -0
- data/research/kavathekar-scribe.pdf +0 -0
- data/research/kusner.pdf +0 -0
- data/research/van_rantwijk/mwm_example.py +19 -0
- data/research/van_rantwijk/mwmatching.py +945 -0
- data/spec/graph_matching/algorithm/matching_algorithm_spec.rb +14 -0
- data/spec/graph_matching/algorithm/mcm_bipartite_spec.rb +98 -0
- data/spec/graph_matching/algorithm/mcm_general_spec.rb +159 -0
- data/spec/graph_matching/algorithm/mwm_bipartite_spec.rb +82 -0
- data/spec/graph_matching/algorithm/mwm_general_spec.rb +439 -0
- data/spec/graph_matching/graph/bigraph_spec.rb +73 -0
- data/spec/graph_matching/graph/graph_spec.rb +53 -0
- data/spec/graph_matching/graph/weighted_spec.rb +29 -0
- data/spec/graph_matching/integer_vertexes_spec.rb +21 -0
- data/spec/graph_matching/matching_spec.rb +89 -0
- data/spec/graph_matching/visualize_spec.rb +38 -0
- data/spec/graph_matching_spec.rb +9 -0
- data/spec/spec_helper.rb +26 -0
- metadata +263 -0
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data_dir = "~/git/jaredbeck/graph_matching/benchmark/mwm_general/complete_graphs"
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set title "MWM Should Be O(ev log v) In General Graphs\n".\
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"(Galil, 1986, p. 34)"
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set key left box
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set term png size 800, 500
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set output data_dir."/plot.png"
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set linetype 1 pointtype 7 linecolor rgb "#FF0000"
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set linetype 2 linewidth 3 linecolor rgb "#00B800"
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set xlabel 'Number of Vertexes, v' textcolor rgb "black"
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set ytics autofreq textcolor rgb "black"
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set ylabel 'Time (s)' textcolor rgb "black"
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set y2tics autofreq textcolor rgb "black"
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set y2label 'ev log v' textcolor rgb "black"
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plot \
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data_dir."/time.data" every 1:1:1::299 \
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using 1:2 title "Time (s)" lt 1 axes x1y1, \
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data_dir."/mn_log_n.data" every 1:1:1::299 \
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using 1:4 title "ev log v" with lines lt 2 axes x1y2
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|
@@ -0,0 +1,39 @@
|
|
1
|
+
# encoding: utf-8
|
2
|
+
|
3
|
+
# No shebang here. Usage:
|
4
|
+
# ruby -I lib benchmark/mwm_general/dense_graphs/benchmark.rb
|
5
|
+
|
6
|
+
require 'benchmark'
|
7
|
+
require 'graph_matching'
|
8
|
+
|
9
|
+
COMPLETENESS = 0.1
|
10
|
+
MIN_SIZE = 2
|
11
|
+
MAX_SIZE = 300
|
12
|
+
|
13
|
+
$stdout.sync = true
|
14
|
+
|
15
|
+
# `completeness` - decimal percentage of vertexes each vertex
|
16
|
+
# is connected to.
|
17
|
+
def incomplete_graph(n, completeness)
|
18
|
+
g = GraphMatching::Graph::WeightedGraph.new
|
19
|
+
0.upto(n - 1) do |i| g.add_vertex(i) end
|
20
|
+
max_weight = ((1 .. n - 1).reduce(:+).to_f * completeness).to_i + 1
|
21
|
+
0.upto(n - 2) do |i|
|
22
|
+
(i + 1).upto(n - 1) do |j|
|
23
|
+
if rand < completeness
|
24
|
+
g.add_edge(i, j)
|
25
|
+
w = rand(max_weight)
|
26
|
+
g.set_w([i, j], w)
|
27
|
+
end
|
28
|
+
end
|
29
|
+
end
|
30
|
+
g
|
31
|
+
end
|
32
|
+
|
33
|
+
MIN_SIZE.upto(MAX_SIZE) do |v|
|
34
|
+
print "%5d\t" % [v]
|
35
|
+
g = incomplete_graph(v, COMPLETENESS)
|
36
|
+
GC.disable
|
37
|
+
puts Benchmark.realtime { g.maximum_weighted_matching(true) }
|
38
|
+
GC.enable
|
39
|
+
end
|
@@ -0,0 +1,22 @@
|
|
1
|
+
data_dir = "~/git/jaredbeck/graph_matching/benchmark/mwm_general/incomplete_graphs"
|
2
|
+
|
3
|
+
set title "MWM in Incomplete General Graphs"
|
4
|
+
set key left box
|
5
|
+
set term png size 800, 500
|
6
|
+
set output data_dir."/plot.png"
|
7
|
+
|
8
|
+
set linetype 1 pointtype 7 linecolor rgb "#FF0000"
|
9
|
+
set linetype 2 pointtype 7 linecolor rgb "#00B800"
|
10
|
+
set linetype 3 pointtype 7 linecolor rgb "#0000FF"
|
11
|
+
|
12
|
+
set xlabel 'Number of Vertexes (n)' tc lt 1
|
13
|
+
set ytics autofreq tc lt 1
|
14
|
+
set ylabel 'Time (s)' tc lt 1
|
15
|
+
|
16
|
+
plot \
|
17
|
+
data_dir."/time_30_pct.data" \
|
18
|
+
using 1:2 title "Time (s) 30% Completeness" lt 3, \
|
19
|
+
data_dir."/time_20_pct.data" \
|
20
|
+
using 1:2 title "Time (s) 20% Completeness" lt 2, \
|
21
|
+
data_dir."/time_10_pct.data" \
|
22
|
+
using 1:2 title "Time (s) 10% Completeness" lt 1
|
Binary file
|
@@ -0,0 +1,299 @@
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