gphys 1.5.0 → 1.5.1
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- checksums.yaml +7 -0
- data/ChangeLog +7414 -0
- data/LICENSE.txt +1 -1
- data/Rakefile +0 -2
- data/doc/derivative/math-doc/document/images.log +385 -0
- data/doc/ep_flux/math-doc/document/images.log +1375 -0
- data/doc/ganalysis/doc/NumRu.html +203 -0
- data/doc/ganalysis/doc/NumRu/GAnalysis.html +931 -0
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- data/doc/ganalysis/doc/NumRu/GAnalysis/LogP.html +425 -0
- data/doc/ganalysis/doc/NumRu/GAnalysis/Met.html +2021 -0
- data/doc/ganalysis/doc/NumRu/GAnalysis/MetZ.html +524 -0
- data/doc/ganalysis/doc/NumRu/GAnalysis/Planet.html +1047 -0
- data/doc/ganalysis/doc/NumRu/GAnalysis/QG.html +794 -0
- data/doc/ganalysis/doc/NumRu/GAnalysis/QG/Uninitialized.html +215 -0
- data/doc/ganalysis/doc/NumRu/GAnalysis/QG_common.html +603 -0
- data/doc/ganalysis/doc/NumRu/GAnalysis/QG_sphere.html +760 -0
- data/doc/ganalysis/doc/NumRu/GAnalysis/QG_sphere_common.html +251 -0
- data/doc/ganalysis/doc/NumRu/GAnalysis/QG_sphere_div.html +424 -0
- data/doc/ganalysis/doc/NumRu/GAnalysis/SigmaCoord.html +321 -0
- data/doc/ganalysis/doc/NumRu/GGraph.html +334 -0
- data/doc/ganalysis/doc/NumRu/GPhys.html +579 -0
- data/doc/ganalysis/doc/Object.html +210 -0
- data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/beta_plane_rb.html +60 -0
- data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/covariance_rb.html +56 -0
- data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/eof_rb.html +64 -0
- data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/fitting_rb.html +54 -0
- data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/histogram_rb.html +58 -0
- data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/log_p_rb.html +60 -0
- data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/met_rb.html +60 -0
- data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/met_z_rb.html +58 -0
- data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/planet_rb.html +58 -0
- data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/qg_rb.html +64 -0
- data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/sigma_coord_rb.html +56 -0
- data/doc/ganalysis/doc/__/__/lib/numru/ganalysis_rb.html +98 -0
- data/doc/ganalysis/doc/created.rid +13 -0
- data/doc/ganalysis/doc/images/brick.png +0 -0
- data/doc/ganalysis/doc/images/brick_link.png +0 -0
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- data/doc/ganalysis/doc/images/date.png +0 -0
- data/doc/ganalysis/doc/images/find.png +0 -0
- data/doc/ganalysis/doc/images/loadingAnimation.gif +0 -0
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- data/doc/ganalysis/doc/images/ruby.png +0 -0
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- data/doc/ganalysis/doc/images/wrench_orange.png +0 -0
- data/doc/ganalysis/doc/images/zoom.png +0 -0
- data/doc/ganalysis/doc/index.html +383 -0
- data/doc/ganalysis/doc/js/darkfish.js +118 -0
- data/doc/ganalysis/doc/js/jquery.js +32 -0
- data/doc/ganalysis/doc/js/quicksearch.js +114 -0
- data/doc/ganalysis/doc/js/thickbox-compressed.js +10 -0
- data/doc/ganalysis/doc/rdoc.css +763 -0
- data/ext/numru/gphys/ext_init.c +1 -0
- data/ext/numru/gphys/quad_mesh_sample.c +478 -0
- data/gphys.gemspec +2 -2
- data/lib/numru/dclext.rb +394 -14
- data/lib/numru/derivative.rb +6 -0
- data/lib/numru/ganalysis/qg.rb +6 -4
- data/lib/numru/ggraph.rb +41 -8
- data/lib/numru/gphys/gphys.rb +62 -14
- data/lib/numru/gphys/gphys_io.rb +4 -4
- data/lib/numru/gphys/version.rb +2 -2
- metadata +84 -79
- data/.gitignore +0 -14
- data/TODO_ep_flux +0 -6
- data/gphys-bigmem.gemspec +0 -44
- data/install.rb +0 -130
- data/sample/cira86_to_nc.rb +0 -122
- data/sample/druby_cli1.rb +0 -23
- data/sample/druby_cli2.rb +0 -28
- data/sample/druby_serv1.rb +0 -30
- data/sample/druby_serv2.rb +0 -51
- data/sample/ep_flux/demo_NCEP_1.rb +0 -48
- data/sample/ep_flux/demo_NCEP_2.rb +0 -57
- data/sample/ep_flux/demo_NCEP_3.rb +0 -81
- data/sample/ggraph_latlon_labelling_dr002690.rb +0 -159
- data/sample/ggraph_mapfit-axes_dr002687.rb +0 -131
- data/sample/map_projection.rb +0 -121
- data/sample/ncep_theta_coord.rb +0 -79
- data/test_old/eof_slp.rb +0 -28
- data/test_old/mltbit.dat +0 -0
- data/test_old/test_ep_flux.rb +0 -533
- data/test_old/test_multibitIO.rb +0 -19
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<span class="ruby-comment"># File ../../lib/numru/ganalysis/beta_plane.rb, line 11</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">lat0_or_latary</span>)
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<span class="ruby-keyword">if</span> <span class="ruby-identifier">lat0_or_latary</span>.<span class="ruby-identifier">respond_to?</span>(<span class="ruby-value">:mean</span>)
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<span class="ruby-ivar">@lat0</span> = <span class="ruby-identifier">lat0_or_latary</span>.<span class="ruby-identifier">mean</span>.<span class="ruby-identifier">to_f</span>
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<span class="ruby-ivar">@phi0</span> = <span class="ruby-identifier">lat0</span> * <span class="ruby-constant">Math</span><span class="ruby-operator">::</span><span class="ruby-constant">PI</span> <span class="ruby-operator">/</span> <span class="ruby-value">180.0</span>
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<span class="ruby-ivar">@f0</span> = <span class="ruby-value">2</span> * <span class="ruby-constant">Planet</span>.<span class="ruby-identifier">omega</span> * <span class="ruby-constant">Math</span><span class="ruby-operator">::</span><span class="ruby-identifier">sin</span>(<span class="ruby-identifier">phi0</span>)
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<span class="ruby-ivar">@beta</span> = <span class="ruby-value">2</span> * <span class="ruby-constant">Planet</span>.<span class="ruby-identifier">omega</span> * <span class="ruby-constant">Math</span><span class="ruby-operator">::</span><span class="ruby-identifier">cos</span>(<span class="ruby-identifier">phi0</span>) <span class="ruby-operator">/</span> <span class="ruby-constant">Planet</span><span class="ruby-operator">::</span><span class="ruby-identifier">radius</span>
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<span class="ruby-ivar">@a</span> = <span class="ruby-constant">Planet</span><span class="ruby-operator">::</span><span class="ruby-identifier">radius</span>
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<span class="ruby-keyword">end</span></pre>
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<span class="method-name">div_h</span><span
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class="method-args">(u, v, x=nil, y=nil)</span>
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<pre>
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<span class="ruby-comment"># File ../../lib/numru/ganalysis/beta_plane.rb, line 59</span>
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<span class="ruby-keyword">def</span> <span class="ruby-identifier">div_h</span>(<span class="ruby-identifier">u</span>, <span class="ruby-identifier">v</span>, <span class="ruby-identifier">x</span>=<span class="ruby-keyword">nil</span>, <span class="ruby-identifier">y</span>=<span class="ruby-keyword">nil</span>)
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<span class="ruby-identifier">lond</span>, <span class="ruby-identifier">latd</span> = <span class="ruby-constant">Planet</span><span class="ruby-operator">::</span><span class="ruby-identifier">find_lon_lat_dims</span>(<span class="ruby-identifier">u</span>)
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<span class="ruby-identifier">x</span>, <span class="ruby-identifier">y</span> = <span class="ruby-identifier">get_x_y</span>(<span class="ruby-identifier">u</span>) <span class="ruby-keyword">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">x</span> <span class="ruby-operator">||</span> <span class="ruby-operator">!</span><span class="ruby-identifier">y</span>
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<span class="ruby-identifier">bc</span> = <span class="ruby-constant">GPhys</span><span class="ruby-operator">::</span><span class="ruby-constant">Derivative</span><span class="ruby-operator">::</span><span class="ruby-constant">CYCLIC_OR_LINEAR</span>
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<span class="ruby-identifier">gx</span> = <span class="ruby-identifier">u</span>.<span class="ruby-identifier">cderiv</span>(<span class="ruby-identifier">lond</span>,<span class="ruby-identifier">bc</span>,<span class="ruby-identifier">x</span>)
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<span class="ruby-identifier">gy</span> = <span class="ruby-identifier">v</span>.<span class="ruby-identifier">threepoint_O2nd_deriv</span>(<span class="ruby-identifier">latd</span>,<span class="ruby-identifier">bc</span>,<span class="ruby-identifier">y</span>)
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<span class="ruby-identifier">div</span> = <span class="ruby-identifier">gx</span> <span class="ruby-operator">+</span> <span class="ruby-identifier">gy</span>
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<span class="ruby-identifier">div</span>.<span class="ruby-identifier">name</span> = <span class="ruby-string">"div"</span>
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<span class="ruby-identifier">div</span>.<span class="ruby-identifier">long_name</span> = <span class="ruby-node">"div(#{u.long_name},#{v.long_name})"</span>
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<span class="ruby-identifier">div</span>
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<span class="ruby-keyword">end</span></pre>
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</div>
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</div><!-- div_h-method -->
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<div id="get_x_y-method" class="method-detail ">
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<a name="method-i-get_x_y"></a>
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<div class="method-heading">
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<span class="method-name">get_x_y</span><span
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class="method-args">(gphys)</span>
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<span class="method-click-advice">click to toggle source</span>
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</div>
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<div class="method-description">
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|
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<p>Derive the x and y from the lon and lat coordinates</p>
|
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+
|
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360
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<p>ARGUMENTS</p>
|
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<ul><li>
|
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362
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<p>gphys (<a href="../GPhys.html">GPhys</a>) : a <a
|
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+
href="../GPhys.html">GPhys</a> object (having a lon&lat as coordinates)</p>
|
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</li></ul>
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365
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+
|
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<p>RETURN VALUE</p>
|
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<ul><li><dl class="rdoc-list"><dt>x, y</dt>
|
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<dd>
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<p>(<a href="../GPhys.html">GPhys</a> objects)</p>
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</dd></dl>
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</li></ul>
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<div class="method-source-code" id="get_x_y-source">
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<pre>
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+
<span class="ruby-comment"># File ../../lib/numru/ganalysis/beta_plane.rb, line 32</span>
|
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|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">get_x_y</span>(<span class="ruby-identifier">gphys</span>)
|
|
379
|
+
<span class="ruby-identifier">lam</span>, <span class="ruby-identifier">phi</span>, = <span class="ruby-constant">Planet</span><span class="ruby-operator">::</span><span class="ruby-identifier">get_lambda_phi</span>(<span class="ruby-identifier">gphys</span>)
|
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|
+
<span class="ruby-identifier">x</span> = <span class="ruby-identifier">lam</span> * (<span class="ruby-ivar">@a</span> * <span class="ruby-constant">Math</span><span class="ruby-operator">::</span><span class="ruby-identifier">cos</span>(<span class="ruby-ivar">@phi0</span>))
|
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381
|
+
<span class="ruby-identifier">x</span>.<span class="ruby-identifier">units</span> = <span class="ruby-ivar">@a</span>.<span class="ruby-identifier">units</span>
|
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382
|
+
<span class="ruby-identifier">y</span> = ( <span class="ruby-identifier">phi</span> <span class="ruby-operator">-</span> <span class="ruby-ivar">@phi0</span> ) * <span class="ruby-ivar">@a</span>
|
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383
|
+
<span class="ruby-identifier">y</span>.<span class="ruby-identifier">units</span> = <span class="ruby-ivar">@a</span>.<span class="ruby-identifier">units</span>
|
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|
+
[<span class="ruby-identifier">x</span>, <span class="ruby-identifier">y</span>]
|
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385
|
+
<span class="ruby-keyword">end</span></pre>
|
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386
|
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</div><!-- get_x_y-source -->
|
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387
|
+
|
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|
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</div>
|
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+
|
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+
|
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391
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|
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+
|
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393
|
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</div><!-- get_x_y-method -->
|
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|
+
|
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|
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|
+
<div id="grad_h-method" class="method-detail ">
|
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|
+
<a name="method-i-grad_h"></a>
|
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398
|
+
|
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399
|
+
|
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400
|
+
<div class="method-heading">
|
|
401
|
+
<span class="method-name">grad_h</span><span
|
|
402
|
+
class="method-args">(gphys, x=nil, y=nil)</span>
|
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403
|
+
<span class="method-click-advice">click to toggle source</span>
|
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404
|
+
</div>
|
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405
|
+
|
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406
|
+
|
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407
|
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<div class="method-description">
|
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408
|
+
|
|
409
|
+
<p>Horizontal gradient</p>
|
|
410
|
+
|
|
411
|
+
<p>ARGUMENTS</p>
|
|
412
|
+
<ul><li>
|
|
413
|
+
<p>gphys (<a href="../GPhys.html">GPhys</a>) : a <a
|
|
414
|
+
href="../GPhys.html">GPhys</a> object (having a lon&lat as coordinates)</p>
|
|
415
|
+
</li><li>
|
|
416
|
+
<p>x [<a href="../GPhys.html">GPhys</a> or nil] : the x coordinate, which can
|
|
417
|
+
be obtained by the <a href="BetaPlane.html#method-i-get_x_y">get_x_y</a>
|
|
418
|
+
method. If nil, internally calculated by <a
|
|
419
|
+
href="BetaPlane.html#method-i-get_x_y">get_x_y</a> method.</p>
|
|
420
|
+
</li><li>
|
|
421
|
+
<p>y [<a href="../GPhys.html">GPhys</a> or nil] : the y coordinate, which can
|
|
422
|
+
be obtained by the <a href="BetaPlane.html#method-i-get_x_y">get_x_y</a>
|
|
423
|
+
method. If nil, internally calculated by <a
|
|
424
|
+
href="BetaPlane.html#method-i-get_x_y">get_x_y</a> method.</p>
|
|
425
|
+
</li></ul>
|
|
426
|
+
|
|
427
|
+
<p>RETURN VALUE</p>
|
|
428
|
+
<ul><li><dl class="rdoc-list"><dt><a href="BetaPlane.html#method-i-grad_x">grad_x</a>, <a href="BetaPlane.html#method-i-grad_y">grad_y</a></dt>
|
|
429
|
+
<dd>
|
|
430
|
+
<p>(<a href="../GPhys.html">GPhys</a> objects)</p>
|
|
431
|
+
</dd></dl>
|
|
432
|
+
</li></ul>
|
|
433
|
+
|
|
434
|
+
|
|
435
|
+
|
|
436
|
+
<div class="method-source-code" id="grad_h-source">
|
|
437
|
+
<pre>
|
|
438
|
+
<span class="ruby-comment"># File ../../lib/numru/ganalysis/beta_plane.rb, line 52</span>
|
|
439
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">grad_h</span>(<span class="ruby-identifier">gphys</span>, <span class="ruby-identifier">x</span>=<span class="ruby-keyword">nil</span>, <span class="ruby-identifier">y</span>=<span class="ruby-keyword">nil</span>)
|
|
440
|
+
<span class="ruby-identifier">lond</span>, <span class="ruby-identifier">latd</span> = <span class="ruby-constant">Planet</span><span class="ruby-operator">::</span><span class="ruby-identifier">find_lon_lat_dims</span>(<span class="ruby-identifier">gphys</span>)
|
|
441
|
+
<span class="ruby-identifier">x</span>, <span class="ruby-identifier">y</span> = <span class="ruby-identifier">get_x_y</span>(<span class="ruby-identifier">gphys</span>) <span class="ruby-keyword">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">x</span> <span class="ruby-operator">||</span> <span class="ruby-operator">!</span><span class="ruby-identifier">y</span>
|
|
442
|
+
<span class="ruby-identifier">bc</span> = <span class="ruby-constant">GPhys</span><span class="ruby-operator">::</span><span class="ruby-constant">Derivative</span><span class="ruby-operator">::</span><span class="ruby-constant">CYCLIC_OR_LINEAR</span>
|
|
443
|
+
[ <span class="ruby-identifier">gphys</span>.<span class="ruby-identifier">cderiv</span>(<span class="ruby-identifier">lond</span>,<span class="ruby-identifier">bc</span>,<span class="ruby-identifier">x</span>), <span class="ruby-identifier">gphys</span>.<span class="ruby-identifier">threepoint_O2nd_deriv</span>(<span class="ruby-identifier">latd</span>,<span class="ruby-identifier">bc</span>,<span class="ruby-identifier">y</span>) ]
|
|
444
|
+
<span class="ruby-keyword">end</span></pre>
|
|
445
|
+
</div><!-- grad_h-source -->
|
|
446
|
+
|
|
447
|
+
</div>
|
|
448
|
+
|
|
449
|
+
|
|
450
|
+
|
|
451
|
+
|
|
452
|
+
</div><!-- grad_h-method -->
|
|
453
|
+
|
|
454
|
+
|
|
455
|
+
<div id="grad_x-method" class="method-detail ">
|
|
456
|
+
<a name="method-i-grad_x"></a>
|
|
457
|
+
|
|
458
|
+
|
|
459
|
+
<div class="method-heading">
|
|
460
|
+
<span class="method-name">grad_x</span><span
|
|
461
|
+
class="method-args">(gphys, x=nil)</span>
|
|
462
|
+
<span class="method-click-advice">click to toggle source</span>
|
|
463
|
+
</div>
|
|
464
|
+
|
|
465
|
+
|
|
466
|
+
<div class="method-description">
|
|
467
|
+
|
|
468
|
+
<p>Gradient in the x direction</p>
|
|
469
|
+
|
|
470
|
+
<p>ARGUMENTS</p>
|
|
471
|
+
<ul><li>
|
|
472
|
+
<p>gphys (<a href="../GPhys.html">GPhys</a>) : a <a
|
|
473
|
+
href="../GPhys.html">GPhys</a> object (having a longitude as a coordinate)</p>
|
|
474
|
+
</li><li>
|
|
475
|
+
<p>x [<a href="../GPhys.html">GPhys</a> or nil] : the x coordinate, which can
|
|
476
|
+
be obtained by the <a href="BetaPlane.html#method-i-get_x_y">get_x_y</a>
|
|
477
|
+
method. If nil, internally calculated by <a
|
|
478
|
+
href="BetaPlane.html#method-i-get_x_y">get_x_y</a> method.</p>
|
|
479
|
+
</li></ul>
|
|
480
|
+
|
|
481
|
+
<p>RETURN VALUE</p>
|
|
482
|
+
<ul><li>
|
|
483
|
+
<p><a href="BetaPlane.html#method-i-grad_x">grad_x</a> (<a
|
|
484
|
+
href="../GPhys.html">GPhys</a> objects)</p>
|
|
485
|
+
</li></ul>
|
|
486
|
+
|
|
487
|
+
|
|
488
|
+
|
|
489
|
+
<div class="method-source-code" id="grad_x-source">
|
|
490
|
+
<pre>
|
|
491
|
+
<span class="ruby-comment"># File ../../lib/numru/ganalysis/beta_plane.rb, line 80</span>
|
|
492
|
+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">grad_x</span>(<span class="ruby-identifier">gphys</span>, <span class="ruby-identifier">x</span>=<span class="ruby-keyword">nil</span>)
|
|
493
|
+
<span class="ruby-identifier">lond</span>, <span class="ruby-identifier">latd</span> = <span class="ruby-constant">Planet</span><span class="ruby-operator">::</span><span class="ruby-identifier">find_lon_lat_dims</span>
|
|
494
|
+
<span class="ruby-identifier">x</span>, = <span class="ruby-identifier">get_x_y</span>(<span class="ruby-identifier">gphys</span>) <span class="ruby-keyword">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">x</span>
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495
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<span class="ruby-identifier">gphys</span>.<span class="ruby-identifier">cderiv</span>(<span class="ruby-identifier">lond</span>,<span class="ruby-identifier">x</span>)
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496
|
+
<span class="ruby-keyword">end</span></pre>
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497
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+
</div><!-- grad_x-source -->
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498
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+
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499
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+
</div>
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500
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+
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501
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+
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502
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+
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503
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504
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</div><!-- grad_x-method -->
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505
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506
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507
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+
<div id="grad_y-method" class="method-detail ">
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508
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+
<a name="method-i-grad_y"></a>
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509
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+
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510
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+
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511
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<div class="method-heading">
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512
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+
<span class="method-name">grad_y</span><span
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513
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+
class="method-args">(gphys, y=nil)</span>
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514
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+
<span class="method-click-advice">click to toggle source</span>
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515
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+
</div>
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516
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+
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517
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+
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518
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<div class="method-description">
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519
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+
|
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520
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+
<p>Gradient in the y direction</p>
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521
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+
|
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522
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+
<p>ARGUMENTS</p>
|
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523
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+
<ul><li>
|
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524
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+
<p>gphys (<a href="../GPhys.html">GPhys</a>) : a <a
|
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525
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+
href="../GPhys.html">GPhys</a> object (having a latitude as a coordinate)</p>
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526
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+
</li><li>
|
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527
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+
<p>y [<a href="../GPhys.html">GPhys</a> or nil] : the y coordinate, which can
|
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528
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+
be obtained by the <a href="BetaPlane.html#method-i-get_x_y">get_x_y</a>
|
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529
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+
method. If nil, internally calculated by <a
|
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530
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+
href="BetaPlane.html#method-i-get_x_y">get_x_y</a> method.</p>
|
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531
|
+
</li></ul>
|
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532
|
+
|
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533
|
+
<p>RETURN VALUE</p>
|
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534
|
+
<ul><li>
|
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535
|
+
<p><a href="BetaPlane.html#method-i-grad_y">grad_y</a> (<a
|
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536
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+
href="../GPhys.html">GPhys</a> objects)</p>
|
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537
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+
</li></ul>
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538
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+
|
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539
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+
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540
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+
|
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541
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<div class="method-source-code" id="grad_y-source">
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542
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<pre>
|
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543
|
+
<span class="ruby-comment"># File ../../lib/numru/ganalysis/beta_plane.rb, line 95</span>
|
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544
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+
<span class="ruby-keyword">def</span> <span class="ruby-identifier">grad_y</span>(<span class="ruby-identifier">gphys</span>, <span class="ruby-identifier">y</span>=<span class="ruby-keyword">nil</span>)
|
|
545
|
+
<span class="ruby-identifier">lond</span>, <span class="ruby-identifier">latd</span> = <span class="ruby-constant">Planet</span><span class="ruby-operator">::</span><span class="ruby-identifier">find_lon_lat_dims</span>
|
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546
|
+
<span class="ruby-identifier">x</span>, <span class="ruby-identifier">y</span> = <span class="ruby-identifier">get_x_y</span>(<span class="ruby-identifier">gphys</span>) <span class="ruby-keyword">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">y</span>
|
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547
|
+
<span class="ruby-identifier">gphys</span>.<span class="ruby-identifier">threepoint_O2nd_deriv</span>(<span class="ruby-identifier">latd</span>,<span class="ruby-identifier">y</span>)
|
|
548
|
+
<span class="ruby-keyword">end</span></pre>
|
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549
|
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</div><!-- grad_y-source -->
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550
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+
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</div>
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</div><!-- grad_y-method -->
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559
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</div><!-- public-instance-method-details -->
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</div><!-- 5Buntitled-5D -->
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</div><!-- documentation -->
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<div id="validator-badges">
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<p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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<p><small>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish
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Rdoc Generator</a> 2</small>.</p>
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</body>
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