gphys 1.5.0 → 1.5.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (94) hide show
  1. checksums.yaml +7 -0
  2. data/ChangeLog +7414 -0
  3. data/LICENSE.txt +1 -1
  4. data/Rakefile +0 -2
  5. data/doc/derivative/math-doc/document/images.log +385 -0
  6. data/doc/ep_flux/math-doc/document/images.log +1375 -0
  7. data/doc/ganalysis/doc/NumRu.html +203 -0
  8. data/doc/ganalysis/doc/NumRu/GAnalysis.html +931 -0
  9. data/doc/ganalysis/doc/NumRu/GAnalysis/BetaPlane.html +574 -0
  10. data/doc/ganalysis/doc/NumRu/GAnalysis/Fitting.html +576 -0
  11. data/doc/ganalysis/doc/NumRu/GAnalysis/LogP.html +425 -0
  12. data/doc/ganalysis/doc/NumRu/GAnalysis/Met.html +2021 -0
  13. data/doc/ganalysis/doc/NumRu/GAnalysis/MetZ.html +524 -0
  14. data/doc/ganalysis/doc/NumRu/GAnalysis/Planet.html +1047 -0
  15. data/doc/ganalysis/doc/NumRu/GAnalysis/QG.html +794 -0
  16. data/doc/ganalysis/doc/NumRu/GAnalysis/QG/Uninitialized.html +215 -0
  17. data/doc/ganalysis/doc/NumRu/GAnalysis/QG_common.html +603 -0
  18. data/doc/ganalysis/doc/NumRu/GAnalysis/QG_sphere.html +760 -0
  19. data/doc/ganalysis/doc/NumRu/GAnalysis/QG_sphere_common.html +251 -0
  20. data/doc/ganalysis/doc/NumRu/GAnalysis/QG_sphere_div.html +424 -0
  21. data/doc/ganalysis/doc/NumRu/GAnalysis/SigmaCoord.html +321 -0
  22. data/doc/ganalysis/doc/NumRu/GGraph.html +334 -0
  23. data/doc/ganalysis/doc/NumRu/GPhys.html +579 -0
  24. data/doc/ganalysis/doc/Object.html +210 -0
  25. data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/beta_plane_rb.html +60 -0
  26. data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/covariance_rb.html +56 -0
  27. data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/eof_rb.html +64 -0
  28. data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/fitting_rb.html +54 -0
  29. data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/histogram_rb.html +58 -0
  30. data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/log_p_rb.html +60 -0
  31. data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/met_rb.html +60 -0
  32. data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/met_z_rb.html +58 -0
  33. data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/planet_rb.html +58 -0
  34. data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/qg_rb.html +64 -0
  35. data/doc/ganalysis/doc/__/__/lib/numru/ganalysis/sigma_coord_rb.html +56 -0
  36. data/doc/ganalysis/doc/__/__/lib/numru/ganalysis_rb.html +98 -0
  37. data/doc/ganalysis/doc/created.rid +13 -0
  38. data/doc/ganalysis/doc/images/brick.png +0 -0
  39. data/doc/ganalysis/doc/images/brick_link.png +0 -0
  40. data/doc/ganalysis/doc/images/bug.png +0 -0
  41. data/doc/ganalysis/doc/images/bullet_black.png +0 -0
  42. data/doc/ganalysis/doc/images/bullet_toggle_minus.png +0 -0
  43. data/doc/ganalysis/doc/images/bullet_toggle_plus.png +0 -0
  44. data/doc/ganalysis/doc/images/date.png +0 -0
  45. data/doc/ganalysis/doc/images/find.png +0 -0
  46. data/doc/ganalysis/doc/images/loadingAnimation.gif +0 -0
  47. data/doc/ganalysis/doc/images/macFFBgHack.png +0 -0
  48. data/doc/ganalysis/doc/images/package.png +0 -0
  49. data/doc/ganalysis/doc/images/page_green.png +0 -0
  50. data/doc/ganalysis/doc/images/page_white_text.png +0 -0
  51. data/doc/ganalysis/doc/images/page_white_width.png +0 -0
  52. data/doc/ganalysis/doc/images/plugin.png +0 -0
  53. data/doc/ganalysis/doc/images/ruby.png +0 -0
  54. data/doc/ganalysis/doc/images/tag_green.png +0 -0
  55. data/doc/ganalysis/doc/images/wrench.png +0 -0
  56. data/doc/ganalysis/doc/images/wrench_orange.png +0 -0
  57. data/doc/ganalysis/doc/images/zoom.png +0 -0
  58. data/doc/ganalysis/doc/index.html +383 -0
  59. data/doc/ganalysis/doc/js/darkfish.js +118 -0
  60. data/doc/ganalysis/doc/js/jquery.js +32 -0
  61. data/doc/ganalysis/doc/js/quicksearch.js +114 -0
  62. data/doc/ganalysis/doc/js/thickbox-compressed.js +10 -0
  63. data/doc/ganalysis/doc/rdoc.css +763 -0
  64. data/ext/numru/gphys/ext_init.c +1 -0
  65. data/ext/numru/gphys/quad_mesh_sample.c +478 -0
  66. data/gphys.gemspec +2 -2
  67. data/lib/numru/dclext.rb +394 -14
  68. data/lib/numru/derivative.rb +6 -0
  69. data/lib/numru/ganalysis/qg.rb +6 -4
  70. data/lib/numru/ggraph.rb +41 -8
  71. data/lib/numru/gphys/gphys.rb +62 -14
  72. data/lib/numru/gphys/gphys_io.rb +4 -4
  73. data/lib/numru/gphys/version.rb +2 -2
  74. metadata +84 -79
  75. data/.gitignore +0 -14
  76. data/TODO_ep_flux +0 -6
  77. data/gphys-bigmem.gemspec +0 -44
  78. data/install.rb +0 -130
  79. data/sample/cira86_to_nc.rb +0 -122
  80. data/sample/druby_cli1.rb +0 -23
  81. data/sample/druby_cli2.rb +0 -28
  82. data/sample/druby_serv1.rb +0 -30
  83. data/sample/druby_serv2.rb +0 -51
  84. data/sample/ep_flux/demo_NCEP_1.rb +0 -48
  85. data/sample/ep_flux/demo_NCEP_2.rb +0 -57
  86. data/sample/ep_flux/demo_NCEP_3.rb +0 -81
  87. data/sample/ggraph_latlon_labelling_dr002690.rb +0 -159
  88. data/sample/ggraph_mapfit-axes_dr002687.rb +0 -131
  89. data/sample/map_projection.rb +0 -121
  90. data/sample/ncep_theta_coord.rb +0 -79
  91. data/test_old/eof_slp.rb +0 -28
  92. data/test_old/mltbit.dat +0 -0
  93. data/test_old/test_ep_flux.rb +0 -533
  94. data/test_old/test_multibitIO.rb +0 -19
data/doc/ganalysis/doc/NumRu/GPhys.html ADDED
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+ "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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+ <html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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+ <head>
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+ <meta content="text/html; charset=UTF-8" http-equiv="Content-Type" />
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+
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+ <title>Class: NumRu::GPhys</title>
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+ <link rel="stylesheet" href="../rdoc.css" type="text/css" media="screen" />
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+ <script src="../js/jquery.js" type="text/javascript" charset="utf-8"></script>
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+ <script src="../js/quicksearch.js" type="text/javascript" charset="utf-8"></script>
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+ <script src="../js/darkfish.js" type="text/javascript" charset="utf-8"></script>
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+ </head>
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+ <body id="top" class="class">
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+ <div id="metadata">
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+ <div id="home-metadata">
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+ <div id="home-section" class="section">
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+ <h3 class="section-header">
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+ <a href="../index.html">Home</a>
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+ <a href="../index.html#classes">Classes</a>
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+ <a href="../index.html#methods">Methods</a>
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+ </h3>
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+ </div>
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+ </div>
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+
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+ <div id="file-metadata">
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+ <div id="file-list-section" class="section">
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+ <h3 class="section-header">In Files</h3>
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+ <div class="section-body">
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+ <ul>
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+
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+ <li><a href="../__/__/lib/numru/ganalysis/covariance_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
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+ class="thickbox" title="../../lib/numru/ganalysis/covariance.rb">../../lib/numru/ganalysis/covariance.rb</a></li>
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+ <li><a href="../__/__/lib/numru/ganalysis/eof_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
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+ class="thickbox" title="../../lib/numru/ganalysis/eof.rb">../../lib/numru/ganalysis/eof.rb</a></li>
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+
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+ <li><a href="../__/__/lib/numru/ganalysis/fitting_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
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+ class="thickbox" title="../../lib/numru/ganalysis/fitting.rb">../../lib/numru/ganalysis/fitting.rb</a></li>
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+
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+ <li><a href="../__/__/lib/numru/ganalysis/histogram_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
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+ class="thickbox" title="../../lib/numru/ganalysis/histogram.rb">../../lib/numru/ganalysis/histogram.rb</a></li>
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+
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+ <li><a href="../__/__/lib/numru/ganalysis/log_p_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
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+ class="thickbox" title="../../lib/numru/ganalysis/log_p.rb">../../lib/numru/ganalysis/log_p.rb</a></li>
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+ <li><a href="../__/__/lib/numru/ganalysis/met_rb.html?TB_iframe=true&amp;height=550&amp;width=785"
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+ class="thickbox" title="../../lib/numru/ganalysis/met.rb">../../lib/numru/ganalysis/met.rb</a></li>
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+
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+ </ul>
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+ </div>
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+ </div>
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+ </div>
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+
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+ <div id="class-metadata">
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+
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+ <!-- Parent Class -->
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+ <div id="parent-class-section" class="section">
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+ <h3 class="section-header">Parent</h3>
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+
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+ <p class="link"><a href="../Object.html">Object</a></p>
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+
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+ </div>
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+ <!-- Method Quickref -->
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+ <div id="method-list-section" class="section">
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+ <h3 class="section-header">Methods</h3>
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+ <ul class="link-list">
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+
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+ <li><a href="#method-i-corelation">#corelation</a></li>
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+
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+ <li><a href="#method-i-correlation">#correlation</a></li>
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+
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+ <li><a href="#method-i-covariance">#covariance</a></li>
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+
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+ <li><a href="#method-i-eof">#eof</a></li>
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+
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+ <li><a href="#method-i-histogram">#histogram</a></li>
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+
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+ <li><a href="#method-i-histogram1D">#histogram1D</a></li>
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+
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+ <li><a href="#method-i-least_square_fit">#least_square_fit</a></li>
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+
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+ <li><a href="#method-i-logp_coord_p2z">#logp_coord_p2z</a></li>
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+
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+ </ul>
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+ </div>
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+ </div>
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+
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+ <div id="project-metadata">
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+
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+
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+
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+ <div id="classindex-section" class="section project-section">
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+ <h3 class="section-header">Class/Module Index
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+ <span class="search-toggle"><img src="../images/find.png"
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+ height="16" width="16" alt="[+]"
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+ title="show/hide quicksearch" /></span></h3>
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+ <form action="#" method="get" accept-charset="utf-8" class="initially-hidden">
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+ <fieldset>
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+ <legend>Quicksearch</legend>
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+ <input type="text" name="quicksearch" value=""
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+ class="quicksearch-field" />
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+ </fieldset>
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+ </form>
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+ <ul class="link-list">
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+
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+ <li><a href="../NumRu.html">NumRu</a></li>
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+
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+ <li><a href="../NumRu/GAnalysis.html">NumRu::GAnalysis</a></li>
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+
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+ <li><a href="../NumRu/GAnalysis/BetaPlane.html">NumRu::GAnalysis::BetaPlane</a></li>
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+
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+ <li><a href="../NumRu/GAnalysis/Fitting.html">NumRu::GAnalysis::Fitting</a></li>
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+
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+ <li><a href="../NumRu/GAnalysis/LogP.html">NumRu::GAnalysis::LogP</a></li>
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+
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+ <li><a href="../NumRu/GAnalysis/Met.html">NumRu::GAnalysis::Met</a></li>
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+
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+ <li><a href="../NumRu/GAnalysis/MetZ.html">NumRu::GAnalysis::MetZ</a></li>
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+
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+ <li><a href="../NumRu/GAnalysis/Planet.html">NumRu::GAnalysis::Planet</a></li>
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+
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+ <li><a href="../NumRu/GAnalysis/QG.html">NumRu::GAnalysis::QG</a></li>
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+
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+ <li><a href="../NumRu/GAnalysis/QG/Uninitialized.html">NumRu::GAnalysis::QG::Uninitialized</a></li>
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+
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+ <li><a href="../NumRu/GAnalysis/QG_common.html">NumRu::GAnalysis::QG_common</a></li>
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+ <li><a href="../NumRu/GAnalysis/QG_sphere.html">NumRu::GAnalysis::QG_sphere</a></li>
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+ <li><a href="../NumRu/GAnalysis/QG_sphere_common.html">NumRu::GAnalysis::QG_sphere_common</a></li>
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+
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+ <li><a href="../NumRu/GAnalysis/QG_sphere_div.html">NumRu::GAnalysis::QG_sphere_div</a></li>
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+
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+ <li><a href="../NumRu/GAnalysis/SigmaCoord.html">NumRu::GAnalysis::SigmaCoord</a></li>
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+
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+ <li><a href="../NumRu/GGraph.html">NumRu::GGraph</a></li>
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+
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+ <li><a href="../NumRu/GPhys.html">NumRu::GPhys</a></li>
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+
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+ <li><a href="../Object.html">Object</a></li>
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+
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+ </ul>
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+ <div id="no-class-search-results" style="display: none;">No matching classes.</div>
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+ </div>
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+
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+
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+ </div>
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+ </div>
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+
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+ <div id="documentation">
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+ <h1 class="class">NumRu::GPhys</h1>
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+
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+ <div id="description" class="description">
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+
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+ <p><a href="GPhys.html">GPhys</a> extension with <a
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+ href="GAnalysis/Fitting.html">GAnalysis::Fitting</a></p>
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+
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+ </div><!-- description -->
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+ <div id="5Buntitled-5D" class="documentation-section">
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+ <!-- Methods -->
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+ <div id="public-instance-method-details" class="method-section section">
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+ <h3 class="section-header">Public Instance Methods</h3>
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+ <div id="corelation-method" class="method-detail ">
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+ <a name="method-i-corelation"></a>
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+ <div class="method-heading">
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+ <span class="method-name">corelation</span><span
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+ class="method-args">(other, *dims)</span>
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+ <span class="method-click-advice">click to toggle source</span>
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+ </div>
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+ <div class="method-description">
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+ <div class="method-source-code" id="corelation-source">
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+ <pre>
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+ <span class="ruby-comment"># File ../../lib/numru/ganalysis/covariance.rb, line 93</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-identifier">corelation</span>(<span class="ruby-identifier">other</span>, *<span class="ruby-identifier">dims</span>)
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+ <span class="ruby-constant">GAnalysis</span>.<span class="ruby-identifier">corelation</span>(<span class="ruby-keyword">self</span>, <span class="ruby-identifier">other</span>, *<span class="ruby-identifier">dims</span>)
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+ <span class="ruby-keyword">end</span></pre>
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+ </div><!-- corelation-source -->
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+
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+ </div>
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+ <div class="aliases">
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+ Also aliased as: <a href="GPhys.html#method-i-correlation">correlation</a>
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+ </div>
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+ </div><!-- corelation-method -->
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+ <a name="method-i-correlation"></a>
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+ <div class="method-heading">
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+ <span class="method-name">correlation</span><span
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+ class="method-args">(other, *dims)</span>
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+ <span class="method-click-advice">click to toggle source</span>
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+ </div>
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+ <div class="aliases">
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+ Alias for: <a href="GPhys.html#method-i-corelation">corelation</a>
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+ </div>
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+ </div><!-- correlation-method -->
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+ <div id="covariance-method" class="method-detail ">
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+ <a name="method-i-covariance"></a>
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+ <div class="method-heading">
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+ <span class="method-name">covariance</span><span
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+ class="method-args">(other, *dims)</span>
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+ <span class="method-click-advice">click to toggle source</span>
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+ </div>
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+ <pre>
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+ <span class="ruby-comment"># File ../../lib/numru/ganalysis/covariance.rb, line 89</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-identifier">covariance</span>(<span class="ruby-identifier">other</span>, *<span class="ruby-identifier">dims</span>)
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+ <span class="ruby-constant">GAnalysis</span>.<span class="ruby-identifier">covariance</span>(<span class="ruby-keyword">self</span>, <span class="ruby-identifier">other</span>, *<span class="ruby-identifier">dims</span>)
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+ <span class="ruby-keyword">end</span></pre>
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+ </div><!-- covariance-source -->
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+ </div>
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+ </div><!-- covariance-method -->
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+ <a name="method-i-eof"></a>
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+ <div class="method-heading">
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+ <span class="method-name">eof</span><span
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+ class="method-args">(*args)</span>
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+ <span class="method-click-advice">click to toggle source</span>
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+ </div>
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+ <pre>
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+ <span class="ruby-comment"># File ../../lib/numru/ganalysis/eof.rb, line 229</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-identifier">eof</span>(*<span class="ruby-identifier">args</span>)
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+ <span class="ruby-constant">GAnalysis</span>.<span class="ruby-identifier">eof</span>(<span class="ruby-keyword">self</span>, *<span class="ruby-identifier">args</span>)
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+ <span class="ruby-keyword">end</span></pre>
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+ <a name="method-i-histogram"></a>
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+ <div class="method-heading">
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+ <span class="method-name">histogram</span><span
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+ class="method-args">(opts=Hash.new)</span>
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+ <span class="method-click-advice">click to toggle source</span>
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+ </div>
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+ <pre>
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+ <span class="ruby-comment"># File ../../lib/numru/ganalysis/histogram.rb, line 155</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-identifier">histogram</span>(<span class="ruby-identifier">opts</span>=<span class="ruby-constant">Hash</span>.<span class="ruby-identifier">new</span>)
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+ <span class="ruby-constant">GAnalysis</span>.<span class="ruby-identifier">histogram</span>(<span class="ruby-keyword">self</span>, <span class="ruby-identifier">opts</span>)
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+ <span class="ruby-keyword">end</span></pre>
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+ </div><!-- histogram-source -->
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+ </div>
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+ <div class="aliases">
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+ Also aliased as: <a href="GPhys.html#method-i-histogram1D">histogram1D</a>
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+ </div>
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+ </div><!-- histogram-method -->
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+ <a name="method-i-histogram1D"></a>
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+ <span class="method-name">histogram1D</span><span
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+ class="method-args">(opts=Hash.new)</span>
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+ <span class="method-click-advice">click to toggle source</span>
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+
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+
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+
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+
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+ </div>
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+
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+
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+
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+
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+ <div class="aliases">
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+ Alias for: <a href="GPhys.html#method-i-histogram">histogram</a>
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+ </div>
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+
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+ </div><!-- histogram1D-method -->
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+
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+
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+ <div id="least_square_fit-method" class="method-detail ">
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+ <a name="method-i-least_square_fit"></a>
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+
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+
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+ <div class="method-heading">
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+ <span class="method-name">least_square_fit</span><span
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+ class="method-args">(functions, ensemble_dims=nil, indep_dims=nil)</span>
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+ <span class="method-click-advice">click to toggle source</span>
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+ <p>Least square fit of a linear combination of any functions (<a
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+ href="GPhys.html">GPhys</a> version).</p>
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+
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+ <p>This method calls <a
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+ href="GAnalysis/Fitting.html#method-i-least_square_fit">GAnalysis::Fitting.least_square_fit</a>
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+ in the <a href="GAnalysis/Fitting.html">GAnalysis::Fitting</a> module. See
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+ its document for the details, usage, and predifined functions.</p>
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+
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+ <h3>ARGUMENTS</h3>
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+
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+ <p>The arguments are the same as the third to fifth arguemnts of <a
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+ href="GAnalysis/Fitting.html#method-i-least_square_fit">GAnalysis::Fitting.least_square_fit</a>
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+ except that <tt>ensemble_dims</tt> and <tt>indep_dims</tt> accept dimension
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+ specification by names (in Strings).</p>
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+ <ul><li>
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+ <p><tt>functions</tt> [Array of Procs] Proc objects to represent the
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+ functions, which accept the elements of <tt>grid_locs</tt> as the arguments
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+ (so the number of arguments fed is equal to the length of
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+ <tt>grid_locs</tt>). (Some predifined functions are available in <a
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+ href="GAnalysis/Fitting.html">GAnalysis::Fitting</a>).</p>
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+ </li><li>
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+ <p><tt>ensemble_dims</tt> (optional) [nil (defualt) or Array of Integers or
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+ Strings] When <tt>grid_locs.length &lt; data.rank</tt>, this argument can
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+ be used to specify the dimensions that are not included in grid_locs and
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+ are used for ensemble averaging</p>
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+ </li><li>
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+ <p><tt>indep_dims</tt> (optional) [nil (defualt) or Array of Integers or
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+ Strings] When <tt>grid_locs.length &lt; data.rank</tt>, this argument can
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+ be used to specify the dimensions that are not included in
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+ <tt>grid_locs</tt> and are treated as independent, so the fitting is made
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+ for each of their component.</p>
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+ </li></ul>
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+
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+ <h3>RETURN VALUES</h3>
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+
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+ <pre>[ c, bf, diff ]</pre>
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+
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+ <p>where</p>
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+ <ul><li>
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+ <p><tt>c</tt> is a NArray containing the coefficients of the functions and the
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+ constant offset; its length is one greater than the number of
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+ <tt>functions</tt> because of the offset. It is 1D unless the
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+ <tt>indep_dims</tt> argument is used (see the examples below).</p>
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+ </li><li>
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+ <p><tt>bf</tt> is a <a href="GPhys.html">GPhys</a> having the best fit grid
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+ point values. Its rank is equal to data.rank unless ensemble_dims are
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+ given; ensemble_dims are deleted unlike the return value of <a
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+ href="GAnalysis/Fitting.html#method-i-least_square_fit">GAnalysis::Fitting.least_square_fit</a>.</p>
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+ </li><li>
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+ <p>rms of the difference between the data and best fit</p>
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+ </li></ul>
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+
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+ <h3>USAGE</h3>
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+
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+ <p>See <a
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+ href="GAnalysis/Fitting.html#method-i-least_square_fit">GAnalysis::Fitting.least_square_fit</a>.</p>
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+
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+
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+
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+ <div class="method-source-code" id="least_square_fit-source">
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+ <pre>
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+ <span class="ruby-comment"># File ../../lib/numru/ganalysis/fitting.rb, line 460</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-identifier">least_square_fit</span>(<span class="ruby-identifier">functions</span>, <span class="ruby-identifier">ensemble_dims</span>=<span class="ruby-keyword">nil</span>, <span class="ruby-identifier">indep_dims</span>=<span class="ruby-keyword">nil</span>)
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+
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+ <span class="ruby-comment">#&lt; preparation &gt;</span>
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+
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+ <span class="ruby-identifier">no_fitting_dims</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>
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+ <span class="ruby-keyword">if</span> <span class="ruby-identifier">ensemble_dims</span>
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+ <span class="ruby-identifier">ensemble_dims</span> = <span class="ruby-identifier">ensemble_dims</span>.<span class="ruby-identifier">collect</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">d</span><span class="ruby-operator">|</span> <span class="ruby-ivar">@grid</span>.<span class="ruby-identifier">dim_index</span>(<span class="ruby-identifier">d</span>)}
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+ <span class="ruby-identifier">no_fitting_dims</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">ensemble_dims</span>
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+ <span class="ruby-keyword">end</span>
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+ <span class="ruby-keyword">if</span> <span class="ruby-identifier">indep_dims</span>
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+ <span class="ruby-identifier">indep_dims</span> = <span class="ruby-identifier">indep_dims</span>.<span class="ruby-identifier">collect</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">d</span><span class="ruby-operator">|</span> <span class="ruby-ivar">@grid</span>.<span class="ruby-identifier">dim_index</span>(<span class="ruby-identifier">d</span>)}
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+ <span class="ruby-identifier">no_fitting_dims</span> <span class="ruby-operator">+=</span> <span class="ruby-identifier">indep_dims</span>
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+ <span class="ruby-keyword">end</span>
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+ <span class="ruby-identifier">fitting_dims</span> = (<span class="ruby-value">0</span><span class="ruby-operator">...</span><span class="ruby-identifier">rank</span>).<span class="ruby-identifier">collect</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">i</span><span class="ruby-operator">|</span> <span class="ruby-identifier">i</span>} <span class="ruby-operator">-</span> <span class="ruby-identifier">no_fitting_dims</span>
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+ <span class="ruby-identifier">grid_locs</span> = <span class="ruby-identifier">fitting_dims</span>.<span class="ruby-identifier">collect</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">d</span><span class="ruby-operator">|</span> <span class="ruby-identifier">coord</span>(<span class="ruby-identifier">d</span>).<span class="ruby-identifier">val</span>}
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+ <span class="ruby-identifier">data</span> = <span class="ruby-keyword">self</span>.<span class="ruby-identifier">val</span>
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+
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+ <span class="ruby-comment">#&lt; fitting &gt;</span>
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+ <span class="ruby-identifier">c</span>, <span class="ruby-identifier">bf</span>, <span class="ruby-identifier">diff</span> = <span class="ruby-constant">GAnalysis</span><span class="ruby-operator">::</span><span class="ruby-constant">Fitting</span>.<span class="ruby-identifier">least_square_fit</span>(<span class="ruby-identifier">data</span>, <span class="ruby-identifier">grid_locs</span>,
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+ <span class="ruby-identifier">functions</span>, <span class="ruby-identifier">ensemble_dims</span>, <span class="ruby-identifier">indep_dims</span>)
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+
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+ <span class="ruby-comment">#&lt; make a GPhys of the best fit &gt;</span>
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+
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+ <span class="ruby-keyword">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">ensemble_dims</span>
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+ <span class="ruby-identifier">grid</span> = <span class="ruby-keyword">self</span>.<span class="ruby-identifier">grid</span>
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+ <span class="ruby-keyword">else</span>
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+ <span class="ruby-identifier">axes</span> = <span class="ruby-constant">Array</span>.<span class="ruby-identifier">new</span>
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+ (<span class="ruby-value">0</span><span class="ruby-operator">...</span><span class="ruby-identifier">rank</span>).<span class="ruby-identifier">each</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">d</span><span class="ruby-operator">|</span>
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+ <span class="ruby-identifier">axes</span>.<span class="ruby-identifier">push</span>(<span class="ruby-keyword">self</span>.<span class="ruby-identifier">axis</span>(<span class="ruby-identifier">d</span>)) <span class="ruby-keyword">unless</span> <span class="ruby-identifier">ensemble_dims</span>.<span class="ruby-identifier">include?</span>(<span class="ruby-identifier">d</span>)
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+ }
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+ <span class="ruby-identifier">grid</span> = <span class="ruby-constant">Grid</span>.<span class="ruby-identifier">new</span>(*<span class="ruby-identifier">axes</span>)
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+ <span class="ruby-identifier">shape</span> = <span class="ruby-identifier">bf</span>.<span class="ruby-identifier">shape</span>
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+ <span class="ruby-identifier">ensemble_dims</span>.<span class="ruby-identifier">sort</span>.<span class="ruby-identifier">reverse_each</span>{<span class="ruby-operator">|</span><span class="ruby-identifier">d</span><span class="ruby-operator">|</span> <span class="ruby-identifier">shape</span>.<span class="ruby-identifier">delete_at</span>(<span class="ruby-identifier">d</span>)}
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+ <span class="ruby-identifier">bf</span> = <span class="ruby-identifier">bf</span>.<span class="ruby-identifier">reshape</span>(*<span class="ruby-identifier">shape</span>)
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+ <span class="ruby-keyword">end</span>
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+
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+ <span class="ruby-identifier">va</span> = <span class="ruby-constant">VArray</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">bf</span>, <span class="ruby-keyword">self</span>.<span class="ruby-identifier">data</span>, <span class="ruby-keyword">self</span>.<span class="ruby-identifier">name</span>)
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+ <span class="ruby-identifier">bf</span> = <span class="ruby-constant">GPhys</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">grid</span>, <span class="ruby-identifier">va</span>)
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+
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+ [<span class="ruby-identifier">c</span>, <span class="ruby-identifier">bf</span>, <span class="ruby-identifier">diff</span>]
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+ <span class="ruby-keyword">end</span></pre>
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+ </div><!-- least_square_fit-source -->
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+
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+ </div>
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+
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+
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+
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+
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+ </div><!-- least_square_fit-method -->
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+
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+
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+ <div id="logp_coord_p2z-method" class="method-detail ">
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+ <a name="method-i-logp_coord_p2z"></a>
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+
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+
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+ <div class="method-heading">
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+ <span class="method-name">logp_coord_p2z</span><span
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+ class="method-args">(pdim=nil)</span>
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+ <span class="method-click-advice">click to toggle source</span>
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+ </div>
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+
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+
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+ <div class="method-description">
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+
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+ <p>Convert the pressure coordinate in self to log-pressure height (after
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+ duplicating self)</p>
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+
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+ <p>Return value: a <a href="GPhys.html">GPhys</a></p>
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+
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+
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+
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+ <div class="method-source-code" id="logp_coord_p2z-source">
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+ <pre>
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+ <span class="ruby-comment"># File ../../lib/numru/ganalysis/log_p.rb, line 84</span>
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+ <span class="ruby-keyword">def</span> <span class="ruby-identifier">logp_coord_p2z</span>(<span class="ruby-identifier">pdim</span>=<span class="ruby-keyword">nil</span>)
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+ <span class="ruby-identifier">pdim</span> = <span class="ruby-constant">GAnalysis</span><span class="ruby-operator">::</span><span class="ruby-constant">Met</span>.<span class="ruby-identifier">find_prs_d</span>(<span class="ruby-keyword">self</span>) <span class="ruby-keyword">if</span> <span class="ruby-operator">!</span><span class="ruby-identifier">pdim</span>
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+ <span class="ruby-identifier">p</span> = <span class="ruby-keyword">self</span>.<span class="ruby-identifier">coord</span>(<span class="ruby-identifier">pdim</span>)
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+ <span class="ruby-identifier">z</span> = <span class="ruby-constant">GAnalysis</span><span class="ruby-operator">::</span><span class="ruby-constant">LogP</span>.<span class="ruby-identifier">p2z</span>(<span class="ruby-identifier">p</span>)
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+ <span class="ruby-identifier">ax</span> = <span class="ruby-keyword">self</span>.<span class="ruby-identifier">axis</span>(<span class="ruby-identifier">pdim</span>).<span class="ruby-identifier">copy</span>
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+ <span class="ruby-identifier">ax</span>.<span class="ruby-identifier">set_pos</span>(<span class="ruby-identifier">z</span>)
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+ <span class="ruby-identifier">ax</span>.<span class="ruby-identifier">name</span> = <span class="ruby-identifier">z</span>.<span class="ruby-identifier">name</span>
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+ <span class="ruby-identifier">grid</span> = <span class="ruby-keyword">self</span>.<span class="ruby-identifier">grid</span>.<span class="ruby-identifier">copy</span>.<span class="ruby-identifier">set_axis</span>(<span class="ruby-identifier">pdim</span>, <span class="ruby-identifier">ax</span>)
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+ <span class="ruby-constant">GPhys</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">grid</span>,<span class="ruby-keyword">self</span>.<span class="ruby-identifier">data</span>)
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+ <span class="ruby-keyword">end</span></pre>
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+ </div><!-- logp_coord_p2z-source -->
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+
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+ </div>
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+
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+
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+
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+
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+ </div><!-- logp_coord_p2z-method -->
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+
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+
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+ </div><!-- public-instance-method-details -->
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+
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+ </div><!-- 5Buntitled-5D -->
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+
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+
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+ </div><!-- documentation -->
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+
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+ <div id="validator-badges">
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+ <p><small><a href="http://validator.w3.org/check/referer">[Validate]</a></small></p>
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+ <p><small>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish
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+ Rdoc Generator</a> 2</small>.</p>
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+ </div>
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+
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+ </body>
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+ </html>
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+