google-api-client 0.8.3 → 0.9

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Files changed (497) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +20 -0
  3. data/.rspec +2 -0
  4. data/.rubocop.yml +7 -0
  5. data/.rubocop_todo.yml +63 -0
  6. data/.travis.yml +22 -0
  7. data/.yardopts +12 -0
  8. data/CHANGELOG.md +52 -2
  9. data/CONTRIBUTING.md +31 -0
  10. data/Gemfile +35 -1
  11. data/MIGRATING.md +171 -0
  12. data/README.md +181 -148
  13. data/Rakefile +1 -40
  14. data/api_names.yaml +1036 -0
  15. data/api_names_out.yaml +26053 -0
  16. data/bin/generate-api +95 -0
  17. data/generated/google/apis/adexchangebuyer_v1_3/classes.rb +1335 -0
  18. data/generated/google/apis/adexchangebuyer_v1_3/representations.rb +446 -0
  19. data/generated/google/apis/adexchangebuyer_v1_3/service.rb +872 -0
  20. data/generated/google/apis/adexchangebuyer_v1_3.rb +35 -0
  21. data/generated/google/apis/adexchangeseller_v2_0/classes.rb +792 -0
  22. data/generated/google/apis/adexchangeseller_v2_0/representations.rb +309 -0
  23. data/generated/google/apis/adexchangeseller_v2_0/service.rb +668 -0
  24. data/generated/google/apis/adexchangeseller_v2_0.rb +38 -0
  25. data/generated/google/apis/admin_datatransfer_v1/classes.rb +267 -0
  26. data/generated/google/apis/admin_datatransfer_v1/representations.rb +118 -0
  27. data/generated/google/apis/admin_datatransfer_v1/service.rb +262 -0
  28. data/generated/google/apis/admin_datatransfer_v1.rb +37 -0
  29. data/generated/google/apis/admin_directory_v1/classes.rb +3141 -0
  30. data/generated/google/apis/admin_directory_v1/representations.rb +1029 -0
  31. data/generated/google/apis/admin_directory_v1/service.rb +3818 -0
  32. data/generated/google/apis/admin_directory_v1.rb +113 -0
  33. data/generated/google/apis/admin_reports_v1/classes.rb +582 -0
  34. data/generated/google/apis/admin_reports_v1/representations.rb +231 -0
  35. data/generated/google/apis/admin_reports_v1/service.rb +336 -0
  36. data/generated/google/apis/admin_reports_v1.rb +38 -0
  37. data/generated/google/apis/adsense_v1_4/classes.rb +1285 -0
  38. data/generated/google/apis/adsense_v1_4/representations.rb +494 -0
  39. data/generated/google/apis/adsense_v1_4/service.rb +1714 -0
  40. data/generated/google/apis/adsense_v1_4.rb +38 -0
  41. data/generated/google/apis/adsensehost_v4_1/classes.rb +834 -0
  42. data/generated/google/apis/adsensehost_v4_1/representations.rb +327 -0
  43. data/generated/google/apis/adsensehost_v4_1/service.rb +1164 -0
  44. data/generated/google/apis/adsensehost_v4_1.rb +35 -0
  45. data/generated/google/apis/analytics_v3/classes.rb +5118 -0
  46. data/generated/google/apis/analytics_v3/representations.rb +1662 -0
  47. data/generated/google/apis/analytics_v3/service.rb +3568 -0
  48. data/generated/google/apis/analytics_v3.rb +49 -0
  49. data/generated/google/apis/androidenterprise_v1/classes.rb +1443 -0
  50. data/generated/google/apis/androidenterprise_v1/representations.rb +538 -0
  51. data/generated/google/apis/androidenterprise_v1/service.rb +2602 -0
  52. data/generated/google/apis/androidenterprise_v1.rb +35 -0
  53. data/generated/google/apis/androidpublisher_v2/classes.rb +1411 -0
  54. data/generated/google/apis/androidpublisher_v2/representations.rb +646 -0
  55. data/generated/google/apis/androidpublisher_v2/service.rb +2338 -0
  56. data/generated/google/apis/androidpublisher_v2.rb +34 -0
  57. data/generated/google/apis/appengine_v1beta4/classes.rb +1532 -0
  58. data/generated/google/apis/appengine_v1beta4/representations.rb +526 -0
  59. data/generated/google/apis/appengine_v1beta4/service.rb +476 -0
  60. data/generated/google/apis/appengine_v1beta4.rb +35 -0
  61. data/generated/google/apis/appsactivity_v1/classes.rb +392 -0
  62. data/generated/google/apis/appsactivity_v1/representations.rb +184 -0
  63. data/generated/google/apis/appsactivity_v1/service.rb +128 -0
  64. data/generated/google/apis/appsactivity_v1.rb +46 -0
  65. data/generated/google/apis/appstate_v1/classes.rb +154 -0
  66. data/generated/google/apis/appstate_v1/representations.rb +79 -0
  67. data/generated/google/apis/appstate_v1/service.rb +260 -0
  68. data/generated/google/apis/appstate_v1.rb +34 -0
  69. data/generated/google/apis/autoscaler_v1beta2/classes.rb +747 -0
  70. data/generated/google/apis/autoscaler_v1beta2/representations.rb +281 -0
  71. data/generated/google/apis/autoscaler_v1beta2/service.rb +478 -0
  72. data/generated/google/apis/autoscaler_v1beta2.rb +38 -0
  73. data/generated/google/apis/bigquery_v2/classes.rb +2471 -0
  74. data/generated/google/apis/bigquery_v2/representations.rb +816 -0
  75. data/generated/google/apis/bigquery_v2/service.rb +982 -0
  76. data/generated/google/apis/bigquery_v2.rb +52 -0
  77. data/generated/google/apis/blogger_v3/classes.rb +1354 -0
  78. data/generated/google/apis/blogger_v3/representations.rb +562 -0
  79. data/generated/google/apis/blogger_v3/service.rb +1587 -0
  80. data/generated/google/apis/blogger_v3.rb +37 -0
  81. data/generated/google/apis/books_v1/classes.rb +3956 -0
  82. data/generated/google/apis/books_v1/representations.rb +1538 -0
  83. data/generated/google/apis/books_v1/service.rb +2290 -0
  84. data/generated/google/apis/books_v1.rb +34 -0
  85. data/generated/google/apis/calendar_v3/classes.rb +1742 -0
  86. data/generated/google/apis/calendar_v3/representations.rb +567 -0
  87. data/generated/google/apis/calendar_v3/service.rb +1968 -0
  88. data/generated/google/apis/calendar_v3.rb +37 -0
  89. data/generated/google/apis/civicinfo_v2/classes.rb +1127 -0
  90. data/generated/google/apis/civicinfo_v2/representations.rb +383 -0
  91. data/generated/google/apis/civicinfo_v2/service.rb +279 -0
  92. data/{lib/google/api_client/service_account.rb → generated/google/apis/civicinfo_v2.rb} +18 -8
  93. data/generated/google/apis/classroom_v1/classes.rb +512 -0
  94. data/generated/google/apis/classroom_v1/representations.rb +217 -0
  95. data/generated/google/apis/classroom_v1/service.rb +970 -0
  96. data/generated/google/apis/classroom_v1.rb +49 -0
  97. data/generated/google/apis/classroom_v1beta1/classes.rb +447 -0
  98. data/generated/google/apis/classroom_v1beta1/representations.rb +190 -0
  99. data/generated/google/apis/classroom_v1beta1/service.rb +791 -0
  100. data/generated/google/apis/classroom_v1beta1.rb +49 -0
  101. data/generated/google/apis/cloudbilling_v1/classes.rb +169 -0
  102. data/generated/google/apis/cloudbilling_v1/representations.rb +79 -0
  103. data/generated/google/apis/cloudbilling_v1/service.rb +258 -0
  104. data/generated/google/apis/cloudbilling_v1.rb +35 -0
  105. data/generated/google/apis/clouddebugger_v2/classes.rb +1004 -0
  106. data/generated/google/apis/clouddebugger_v2/representations.rb +410 -0
  107. data/generated/google/apis/clouddebugger_v2/service.rb +370 -0
  108. data/generated/google/apis/clouddebugger_v2.rb +41 -0
  109. data/generated/google/apis/cloudmonitoring_v2beta2/classes.rb +679 -0
  110. data/generated/google/apis/cloudmonitoring_v2beta2/representations.rb +311 -0
  111. data/generated/google/apis/cloudmonitoring_v2beta2/service.rb +452 -0
  112. data/generated/google/apis/cloudmonitoring_v2beta2.rb +37 -0
  113. data/generated/google/apis/cloudresourcemanager_v1beta1/classes.rb +437 -0
  114. data/generated/google/apis/cloudresourcemanager_v1beta1/representations.rb +188 -0
  115. data/generated/google/apis/cloudresourcemanager_v1beta1/service.rb +623 -0
  116. data/generated/google/apis/cloudresourcemanager_v1beta1.rb +38 -0
  117. data/generated/google/apis/cloudtrace_v1/classes.rb +188 -0
  118. data/generated/google/apis/cloudtrace_v1/representations.rb +92 -0
  119. data/generated/google/apis/cloudtrace_v1/service.rb +190 -0
  120. data/generated/google/apis/cloudtrace_v1.rb +35 -0
  121. data/generated/google/apis/clouduseraccounts_beta/classes.rb +823 -0
  122. data/generated/google/apis/clouduseraccounts_beta/representations.rb +313 -0
  123. data/generated/google/apis/clouduseraccounts_beta/service.rb +854 -0
  124. data/generated/google/apis/clouduseraccounts_beta.rb +43 -0
  125. data/generated/google/apis/compute_beta/classes.rb +9128 -0
  126. data/generated/google/apis/compute_beta/representations.rb +3048 -0
  127. data/generated/google/apis/compute_beta/service.rb +10154 -0
  128. data/generated/google/apis/compute_beta.rb +49 -0
  129. data/generated/google/apis/compute_v1/classes.rb +8681 -0
  130. data/generated/google/apis/compute_v1/representations.rb +2895 -0
  131. data/generated/google/apis/compute_v1/service.rb +9252 -0
  132. data/generated/google/apis/compute_v1.rb +49 -0
  133. data/generated/google/apis/container_v1/classes.rb +463 -0
  134. data/generated/google/apis/container_v1/representations.rb +175 -0
  135. data/generated/google/apis/container_v1/service.rb +367 -0
  136. data/generated/google/apis/container_v1.rb +35 -0
  137. data/generated/google/apis/container_v1beta1/classes.rb +466 -0
  138. data/generated/google/apis/container_v1beta1/representations.rb +177 -0
  139. data/generated/google/apis/container_v1beta1/service.rb +394 -0
  140. data/generated/google/apis/container_v1beta1.rb +35 -0
  141. data/generated/google/apis/content_v2/classes.rb +5986 -0
  142. data/generated/google/apis/content_v2/representations.rb +2288 -0
  143. data/generated/google/apis/content_v2/service.rb +2338 -0
  144. data/generated/google/apis/content_v2.rb +35 -0
  145. data/generated/google/apis/coordinate_v1/classes.rb +669 -0
  146. data/generated/google/apis/coordinate_v1/representations.rb +285 -0
  147. data/generated/google/apis/coordinate_v1/service.rb +678 -0
  148. data/generated/google/apis/coordinate_v1.rb +37 -0
  149. data/generated/google/apis/customsearch_v1/classes.rb +771 -0
  150. data/generated/google/apis/customsearch_v1/representations.rb +276 -0
  151. data/generated/google/apis/customsearch_v1/service.rb +207 -0
  152. data/{lib/google/api_client/auth/compute_service_account.rb → generated/google/apis/customsearch_v1.rb} +13 -10
  153. data/generated/google/apis/datastore_v1beta2/classes.rb +1186 -0
  154. data/generated/google/apis/datastore_v1beta2/representations.rb +526 -0
  155. data/generated/google/apis/datastore_v1beta2/service.rb +294 -0
  156. data/generated/google/apis/datastore_v1beta2.rb +40 -0
  157. data/generated/google/apis/deploymentmanager_v2/classes.rb +1091 -0
  158. data/generated/google/apis/deploymentmanager_v2/representations.rb +422 -0
  159. data/generated/google/apis/deploymentmanager_v2/service.rb +857 -0
  160. data/generated/google/apis/deploymentmanager_v2.rb +44 -0
  161. data/generated/google/apis/deploymentmanager_v2beta2/classes.rb +843 -0
  162. data/generated/google/apis/deploymentmanager_v2beta2/representations.rb +306 -0
  163. data/generated/google/apis/deploymentmanager_v2beta2/service.rb +689 -0
  164. data/generated/google/apis/deploymentmanager_v2beta2.rb +44 -0
  165. data/generated/google/apis/dfareporting_v2_1/classes.rb +10770 -0
  166. data/generated/google/apis/dfareporting_v2_1/representations.rb +3438 -0
  167. data/generated/google/apis/dfareporting_v2_1/service.rb +8585 -0
  168. data/generated/google/apis/dfareporting_v2_1.rb +37 -0
  169. data/generated/google/apis/discovery_v1/classes.rb +961 -0
  170. data/generated/google/apis/discovery_v1/representations.rb +357 -0
  171. data/generated/google/apis/discovery_v1/service.rb +142 -0
  172. data/generated/google/apis/discovery_v1.rb +32 -0
  173. data/generated/google/apis/dns_v1/classes.rb +406 -0
  174. data/generated/google/apis/dns_v1/representations.rb +151 -0
  175. data/generated/google/apis/dns_v1/service.rb +454 -0
  176. data/generated/google/apis/dns_v1.rb +44 -0
  177. data/generated/google/apis/doubleclickbidmanager_v1/classes.rb +716 -0
  178. data/generated/google/apis/doubleclickbidmanager_v1/representations.rb +298 -0
  179. data/generated/google/apis/doubleclickbidmanager_v1/service.rb +341 -0
  180. data/generated/google/apis/doubleclickbidmanager_v1.rb +31 -0
  181. data/generated/google/apis/doubleclicksearch_v2/classes.rb +956 -0
  182. data/generated/google/apis/doubleclicksearch_v2/representations.rb +316 -0
  183. data/generated/google/apis/doubleclicksearch_v2/service.rb +480 -0
  184. data/generated/google/apis/doubleclicksearch_v2.rb +35 -0
  185. data/generated/google/apis/drive_v2/classes.rb +2562 -0
  186. data/generated/google/apis/drive_v2/representations.rb +795 -0
  187. data/generated/google/apis/drive_v2/service.rb +2696 -0
  188. data/generated/google/apis/drive_v2.rb +58 -0
  189. data/generated/google/apis/drive_v3/classes.rb +1534 -0
  190. data/generated/google/apis/drive_v3/representations.rb +497 -0
  191. data/generated/google/apis/drive_v3/service.rb +1541 -0
  192. data/generated/google/apis/drive_v3.rb +55 -0
  193. data/generated/google/apis/fitness_v1/classes.rb +885 -0
  194. data/generated/google/apis/fitness_v1/representations.rb +320 -0
  195. data/generated/google/apis/fitness_v1/service.rb +675 -0
  196. data/generated/google/apis/fitness_v1.rb +49 -0
  197. data/generated/google/apis/fusiontables_v2/classes.rb +1048 -0
  198. data/generated/google/apis/fusiontables_v2/representations.rb +409 -0
  199. data/generated/google/apis/fusiontables_v2/service.rb +1463 -0
  200. data/generated/google/apis/fusiontables_v2.rb +37 -0
  201. data/generated/google/apis/games_configuration_v1configuration/classes.rb +506 -0
  202. data/generated/google/apis/games_configuration_v1configuration/representations.rb +206 -0
  203. data/generated/google/apis/games_configuration_v1configuration/service.rb +565 -0
  204. data/generated/google/apis/games_configuration_v1configuration.rb +34 -0
  205. data/generated/google/apis/games_management_v1management/classes.rb +524 -0
  206. data/generated/google/apis/games_management_v1management/representations.rb +231 -0
  207. data/generated/google/apis/games_management_v1management/service.rb +994 -0
  208. data/generated/google/apis/games_management_v1management.rb +37 -0
  209. data/generated/google/apis/games_v1/classes.rb +4617 -0
  210. data/generated/google/apis/games_v1/representations.rb +1584 -0
  211. data/generated/google/apis/games_v1/service.rb +2290 -0
  212. data/generated/google/apis/games_v1.rb +40 -0
  213. data/generated/google/apis/gan_v1beta1/classes.rb +1428 -0
  214. data/generated/google/apis/gan_v1beta1/representations.rb +428 -0
  215. data/generated/google/apis/gan_v1beta1/service.rb +682 -0
  216. data/generated/google/apis/gan_v1beta1.rb +31 -0
  217. data/generated/google/apis/genomics_v1/classes.rb +2609 -0
  218. data/generated/google/apis/genomics_v1/representations.rb +909 -0
  219. data/generated/google/apis/genomics_v1/service.rb +1676 -0
  220. data/generated/google/apis/genomics_v1.rb +49 -0
  221. data/generated/google/apis/genomics_v1beta2/classes.rb +3288 -0
  222. data/generated/google/apis/genomics_v1beta2/representations.rb +1194 -0
  223. data/generated/google/apis/genomics_v1beta2/service.rb +2392 -0
  224. data/generated/google/apis/genomics_v1beta2.rb +46 -0
  225. data/generated/google/apis/gmail_v1/classes.rb +794 -0
  226. data/generated/google/apis/gmail_v1/representations.rb +339 -0
  227. data/generated/google/apis/gmail_v1/service.rb +1470 -0
  228. data/generated/google/apis/gmail_v1.rb +52 -0
  229. data/generated/google/apis/groupsmigration_v1/classes.rb +51 -0
  230. data/generated/google/apis/groupsmigration_v1/representations.rb +38 -0
  231. data/generated/google/apis/groupsmigration_v1/service.rb +110 -0
  232. data/generated/google/apis/groupsmigration_v1.rb +34 -0
  233. data/generated/google/apis/groupssettings_v1/classes.rb +221 -0
  234. data/generated/google/apis/groupssettings_v1/representations.rb +64 -0
  235. data/generated/google/apis/groupssettings_v1/service.rb +179 -0
  236. data/generated/google/apis/groupssettings_v1.rb +34 -0
  237. data/generated/google/apis/identitytoolkit_v3/classes.rb +1466 -0
  238. data/generated/google/apis/identitytoolkit_v3/representations.rb +509 -0
  239. data/generated/google/apis/identitytoolkit_v3/service.rb +581 -0
  240. data/generated/google/apis/identitytoolkit_v3.rb +31 -0
  241. data/generated/google/apis/kgsearch_v1/classes.rb +59 -0
  242. data/generated/google/apis/kgsearch_v1/representations.rb +39 -0
  243. data/generated/google/apis/kgsearch_v1/service.rb +111 -0
  244. data/{spec/google/api_client/request_spec.rb → generated/google/apis/kgsearch_v1.rb} +16 -13
  245. data/generated/google/apis/licensing_v1/classes.rb +132 -0
  246. data/generated/google/apis/licensing_v1/representations.rb +68 -0
  247. data/generated/google/apis/licensing_v1/service.rb +369 -0
  248. data/generated/google/apis/licensing_v1.rb +34 -0
  249. data/generated/google/apis/logging_v1beta3/classes.rb +1079 -0
  250. data/generated/google/apis/logging_v1beta3/representations.rb +366 -0
  251. data/generated/google/apis/logging_v1beta3/service.rb +1001 -0
  252. data/generated/google/apis/logging_v1beta3.rb +47 -0
  253. data/generated/google/apis/manager_v1beta2/classes.rb +1287 -0
  254. data/generated/google/apis/manager_v1beta2/representations.rb +536 -0
  255. data/generated/google/apis/manager_v1beta2/service.rb +372 -0
  256. data/generated/google/apis/manager_v1beta2.rb +53 -0
  257. data/generated/google/apis/mapsengine_v1/classes.rb +2873 -0
  258. data/generated/google/apis/mapsengine_v1/representations.rb +1235 -0
  259. data/generated/google/apis/mapsengine_v1/service.rb +3388 -0
  260. data/generated/google/apis/mapsengine_v1.rb +38 -0
  261. data/generated/google/apis/mirror_v1/classes.rb +1072 -0
  262. data/generated/google/apis/mirror_v1/representations.rb +350 -0
  263. data/generated/google/apis/mirror_v1/service.rb +977 -0
  264. data/generated/google/apis/mirror_v1.rb +37 -0
  265. data/generated/google/apis/oauth2_v2/classes.rb +245 -0
  266. data/generated/google/apis/oauth2_v2/representations.rb +94 -0
  267. data/generated/google/apis/oauth2_v2/service.rb +199 -0
  268. data/generated/google/apis/oauth2_v2.rb +43 -0
  269. data/generated/google/apis/pagespeedonline_v2/classes.rb +614 -0
  270. data/generated/google/apis/pagespeedonline_v2/representations.rb +244 -0
  271. data/generated/google/apis/pagespeedonline_v2/service.rb +119 -0
  272. data/generated/google/apis/pagespeedonline_v2.rb +32 -0
  273. data/generated/google/apis/partners_v2/classes.rb +942 -0
  274. data/generated/google/apis/partners_v2/representations.rb +402 -0
  275. data/generated/google/apis/partners_v2/service.rb +400 -0
  276. data/generated/google/apis/partners_v2.rb +32 -0
  277. data/generated/google/apis/plus_domains_v1/classes.rb +2609 -0
  278. data/generated/google/apis/plus_domains_v1/representations.rb +987 -0
  279. data/generated/google/apis/plus_domains_v1/service.rb +904 -0
  280. data/generated/google/apis/plus_domains_v1.rb +61 -0
  281. data/generated/google/apis/plus_v1/classes.rb +2094 -0
  282. data/generated/google/apis/plus_v1/representations.rb +805 -0
  283. data/generated/google/apis/plus_v1/service.rb +470 -0
  284. data/generated/google/apis/plus_v1.rb +43 -0
  285. data/generated/google/apis/prediction_v1_6/classes.rb +751 -0
  286. data/generated/google/apis/prediction_v1_6/representations.rb +327 -0
  287. data/generated/google/apis/prediction_v1_6/service.rb +380 -0
  288. data/generated/google/apis/prediction_v1_6.rb +44 -0
  289. data/generated/google/apis/proximitybeacon_v1beta1/classes.rb +639 -0
  290. data/generated/google/apis/proximitybeacon_v1beta1/representations.rb +274 -0
  291. data/generated/google/apis/proximitybeacon_v1beta1/service.rb +591 -0
  292. data/generated/google/apis/proximitybeacon_v1beta1.rb +31 -0
  293. data/generated/google/apis/pubsub_v1/classes.rb +614 -0
  294. data/generated/google/apis/pubsub_v1/representations.rb +281 -0
  295. data/generated/google/apis/pubsub_v1/service.rb +774 -0
  296. data/generated/google/apis/pubsub_v1.rb +37 -0
  297. data/generated/google/apis/pubsub_v1beta2/classes.rb +620 -0
  298. data/generated/google/apis/pubsub_v1beta2/representations.rb +282 -0
  299. data/generated/google/apis/pubsub_v1beta2/service.rb +774 -0
  300. data/generated/google/apis/pubsub_v1beta2.rb +37 -0
  301. data/generated/google/apis/qpx_express_v1/classes.rb +1268 -0
  302. data/generated/google/apis/qpx_express_v1/representations.rb +424 -0
  303. data/generated/google/apis/qpx_express_v1/service.rb +100 -0
  304. data/generated/google/apis/qpx_express_v1.rb +31 -0
  305. data/generated/google/apis/replicapool_v1beta2/classes.rb +631 -0
  306. data/generated/google/apis/replicapool_v1beta2/representations.rb +236 -0
  307. data/generated/google/apis/replicapool_v1beta2/service.rb +608 -0
  308. data/generated/google/apis/replicapool_v1beta2.rb +44 -0
  309. data/generated/google/apis/replicapoolupdater_v1beta1/classes.rb +733 -0
  310. data/generated/google/apis/replicapoolupdater_v1beta1/representations.rb +264 -0
  311. data/generated/google/apis/replicapoolupdater_v1beta1/service.rb +508 -0
  312. data/generated/google/apis/replicapoolupdater_v1beta1.rb +44 -0
  313. data/generated/google/apis/reseller_v1/classes.rb +520 -0
  314. data/generated/google/apis/reseller_v1/representations.rb +200 -0
  315. data/generated/google/apis/reseller_v1/service.rb +623 -0
  316. data/generated/google/apis/reseller_v1.rb +37 -0
  317. data/generated/google/apis/resourceviews_v1beta2/classes.rb +660 -0
  318. data/generated/google/apis/resourceviews_v1beta2/representations.rb +269 -0
  319. data/generated/google/apis/resourceviews_v1beta2/service.rb +563 -0
  320. data/generated/google/apis/resourceviews_v1beta2.rb +50 -0
  321. data/generated/google/apis/script_v1/classes.rb +259 -0
  322. data/generated/google/apis/script_v1/representations.rb +106 -0
  323. data/generated/google/apis/script_v1/service.rb +98 -0
  324. data/generated/google/apis/script_v1.rb +61 -0
  325. data/generated/google/apis/site_verification_v1/classes.rb +185 -0
  326. data/generated/google/apis/site_verification_v1/representations.rb +101 -0
  327. data/generated/google/apis/site_verification_v1/service.rb +315 -0
  328. data/generated/google/apis/site_verification_v1.rb +37 -0
  329. data/generated/google/apis/sqladmin_v1beta4/classes.rb +2001 -0
  330. data/generated/google/apis/sqladmin_v1beta4/representations.rb +758 -0
  331. data/generated/google/apis/sqladmin_v1beta4/service.rb +1625 -0
  332. data/generated/google/apis/sqladmin_v1beta4.rb +37 -0
  333. data/generated/google/apis/storage_v1/classes.rb +1222 -0
  334. data/generated/google/apis/storage_v1/representations.rb +445 -0
  335. data/generated/google/apis/storage_v1/service.rb +1903 -0
  336. data/generated/google/apis/storage_v1.rb +46 -0
  337. data/generated/google/apis/storagetransfer_v1/classes.rb +1046 -0
  338. data/generated/google/apis/storagetransfer_v1/representations.rb +370 -0
  339. data/generated/google/apis/storagetransfer_v1/service.rb +473 -0
  340. data/generated/google/apis/storagetransfer_v1.rb +35 -0
  341. data/generated/google/apis/tagmanager_v1/classes.rb +1384 -0
  342. data/generated/google/apis/tagmanager_v1/representations.rb +515 -0
  343. data/generated/google/apis/tagmanager_v1/service.rb +1817 -0
  344. data/generated/google/apis/tagmanager_v1.rb +52 -0
  345. data/generated/google/apis/taskqueue_v1beta2/classes.rb +254 -0
  346. data/generated/google/apis/taskqueue_v1beta2/representations.rb +114 -0
  347. data/generated/google/apis/taskqueue_v1beta2/service.rb +408 -0
  348. data/generated/google/apis/taskqueue_v1beta2.rb +37 -0
  349. data/generated/google/apis/tasks_v1/classes.rb +296 -0
  350. data/generated/google/apis/tasks_v1/representations.rb +115 -0
  351. data/generated/google/apis/tasks_v1/service.rb +643 -0
  352. data/generated/google/apis/tasks_v1.rb +37 -0
  353. data/generated/google/apis/translate_v2/classes.rb +168 -0
  354. data/generated/google/apis/translate_v2/representations.rb +109 -0
  355. data/generated/google/apis/translate_v2/service.rb +182 -0
  356. data/generated/google/apis/translate_v2.rb +31 -0
  357. data/generated/google/apis/urlshortener_v1/classes.rb +246 -0
  358. data/generated/google/apis/urlshortener_v1/representations.rb +111 -0
  359. data/generated/google/apis/urlshortener_v1/service.rb +176 -0
  360. data/generated/google/apis/urlshortener_v1.rb +34 -0
  361. data/generated/google/apis/webmasters_v3/classes.rb +563 -0
  362. data/generated/google/apis/webmasters_v3/representations.rb +250 -0
  363. data/generated/google/apis/webmasters_v3/service.rb +573 -0
  364. data/generated/google/apis/webmasters_v3.rb +37 -0
  365. data/generated/google/apis/youtube_analytics_v1/classes.rb +546 -0
  366. data/generated/google/apis/youtube_analytics_v1/representations.rb +243 -0
  367. data/generated/google/apis/youtube_analytics_v1/service.rb +562 -0
  368. data/generated/google/apis/youtube_analytics_v1.rb +46 -0
  369. data/generated/google/apis/youtube_v3/classes.rb +8136 -0
  370. data/generated/google/apis/youtube_v3/representations.rb +2838 -0
  371. data/generated/google/apis/youtube_v3/service.rb +4403 -0
  372. data/generated/google/apis/youtube_v3.rb +49 -0
  373. data/generated/google/apis/youtubereporting_v1/classes.rb +258 -0
  374. data/generated/google/apis/youtubereporting_v1/representations.rb +128 -0
  375. data/generated/google/apis/youtubereporting_v1/service.rb +364 -0
  376. data/generated/google/apis/youtubereporting_v1.rb +38 -0
  377. data/google-api-client.gemspec +27 -39
  378. data/lib/google/api_client/auth/installed_app.rb +7 -5
  379. data/lib/google/api_client/auth/key_utils.rb +12 -11
  380. data/lib/google/api_client/auth/storage.rb +5 -2
  381. data/lib/google/api_client/auth/storages/file_store.rb +2 -3
  382. data/lib/google/api_client/auth/storages/redis_store.rb +7 -2
  383. data/lib/google/api_client/client_secrets.rb +4 -5
  384. data/lib/google/apis/core/api_command.rb +135 -0
  385. data/lib/google/apis/core/base_service.rb +317 -0
  386. data/lib/google/apis/core/batch.rb +239 -0
  387. data/lib/google/apis/core/download.rb +94 -0
  388. data/lib/google/apis/core/hashable.rb +44 -0
  389. data/lib/google/apis/core/http_client_adapter.rb +82 -0
  390. data/lib/google/apis/core/http_command.rb +312 -0
  391. data/lib/google/apis/core/json_representation.rb +127 -0
  392. data/lib/google/{api_client/version.rb → apis/core/logging.rb} +12 -8
  393. data/lib/google/apis/core/multipart.rb +187 -0
  394. data/lib/google/apis/core/upload.rb +288 -0
  395. data/lib/google/{api_client → apis}/errors.rb +39 -28
  396. data/lib/google/apis/generator/annotator.rb +295 -0
  397. data/lib/google/apis/generator/helpers.rb +74 -0
  398. data/lib/google/apis/generator/model.rb +143 -0
  399. data/lib/google/apis/generator/template.rb +124 -0
  400. data/lib/google/apis/generator/templates/_class.tmpl +40 -0
  401. data/lib/google/apis/generator/templates/_method.tmpl +92 -0
  402. data/lib/google/apis/generator/templates/_representation.tmpl +51 -0
  403. data/lib/google/apis/generator/templates/_representation_stub.tmpl +15 -0
  404. data/lib/google/apis/generator/templates/_representation_type.tmpl +10 -0
  405. data/lib/google/{api_client/reference.rb → apis/generator/templates/classes.rb.tmpl} +11 -9
  406. data/lib/google/apis/generator/templates/module.rb.tmpl +40 -0
  407. data/lib/google/apis/generator/templates/representations.rb.tmpl +32 -0
  408. data/lib/google/apis/generator/templates/service.rb.tmpl +60 -0
  409. data/lib/google/apis/generator.rb +70 -0
  410. data/lib/google/apis/options.rb +85 -0
  411. data/lib/google/apis/version.rb +39 -0
  412. data/lib/google/apis.rb +48 -0
  413. data/rakelib/metrics.rake +22 -0
  414. data/rakelib/rubocop.rake +10 -0
  415. data/rakelib/spec.rake +11 -0
  416. data/rakelib/yard.rake +11 -0
  417. data/samples/Gemfile +7 -0
  418. data/samples/README.md +51 -0
  419. data/samples/google-api-samples +32 -0
  420. data/samples/lib/base_cli.rb +94 -0
  421. data/samples/lib/samples/analytics.rb +62 -0
  422. data/samples/lib/samples/calendar.rb +83 -0
  423. data/samples/lib/samples/drive.rb +82 -0
  424. data/samples/lib/samples/gmail.rb +50 -0
  425. data/samples/lib/samples/pubsub.rb +114 -0
  426. data/samples/lib/samples/translate.rb +44 -0
  427. data/samples/lib/samples/you_tube.rb +44 -0
  428. data/script/generate +95 -0
  429. data/script/package +8 -0
  430. data/script/release +15 -0
  431. data/spec/fixtures/files/api_names.yaml +3 -0
  432. data/spec/fixtures/files/auth_stored_credentials.json +8 -0
  433. data/spec/fixtures/files/child/.gitignore +0 -0
  434. data/spec/fixtures/files/client_secrets.json +1 -0
  435. data/spec/fixtures/files/invalid.json +1 -0
  436. data/spec/fixtures/files/test.blah +1 -0
  437. data/spec/fixtures/files/test.txt +1 -0
  438. data/spec/fixtures/files/test_api.json +440 -0
  439. data/spec/google/api_client/auth/storage_spec.rb +1 -3
  440. data/spec/google/api_client/auth/storages/file_store_spec.rb +1 -2
  441. data/spec/google/api_client/auth/storages/redis_store_spec.rb +1 -3
  442. data/spec/google/api_client/client_secrets_spec.rb +38 -1
  443. data/spec/google/apis/core/api_command_spec.rb +209 -0
  444. data/spec/google/apis/core/batch_spec.rb +142 -0
  445. data/spec/google/apis/core/download_spec.rb +103 -0
  446. data/spec/google/apis/core/hashable_spec.rb +60 -0
  447. data/spec/google/apis/core/http_command_spec.rb +284 -0
  448. data/spec/google/apis/core/json_representation_spec.rb +192 -0
  449. data/spec/google/apis/core/service_spec.rb +247 -0
  450. data/spec/google/apis/core/upload_spec.rb +300 -0
  451. data/{lib/google/api_client/discovery.rb → spec/google/apis/generated_spec.rb} +13 -5
  452. data/spec/google/apis/generator/generator_spec.rb +272 -0
  453. data/spec/google/apis/logging_spec.rb +45 -0
  454. data/spec/google/apis/options_spec.rb +40 -0
  455. data/spec/integration_tests/adsense_spec.rb +29 -0
  456. data/spec/integration_tests/drive_spec.rb +35 -0
  457. data/spec/integration_tests/pubsub_spec.rb +48 -0
  458. data/spec/integration_tests/url_shortener_spec.rb +45 -0
  459. data/spec/spec_helper/load_path_spec.rb +33 -0
  460. data/spec/spec_helper.rb +131 -44
  461. data/third_party/hurley_patches.rb +103 -0
  462. metadata +533 -170
  463. data/lib/compat/multi_json.rb +0 -19
  464. data/lib/google/api_client/auth/file_storage.rb +0 -59
  465. data/lib/google/api_client/auth/jwt_asserter.rb +0 -126
  466. data/lib/google/api_client/auth/pkcs12.rb +0 -41
  467. data/lib/google/api_client/batch.rb +0 -325
  468. data/lib/google/api_client/charset.rb +0 -33
  469. data/lib/google/api_client/discovery/api.rb +0 -300
  470. data/lib/google/api_client/discovery/media.rb +0 -77
  471. data/lib/google/api_client/discovery/method.rb +0 -363
  472. data/lib/google/api_client/discovery/resource.rb +0 -156
  473. data/lib/google/api_client/discovery/schema.rb +0 -119
  474. data/lib/google/api_client/environment.rb +0 -42
  475. data/lib/google/api_client/gzip.rb +0 -28
  476. data/lib/google/api_client/logging.rb +0 -32
  477. data/lib/google/api_client/media.rb +0 -259
  478. data/lib/google/api_client/railtie.rb +0 -18
  479. data/lib/google/api_client/request.rb +0 -350
  480. data/lib/google/api_client/result.rb +0 -255
  481. data/lib/google/api_client/service/batch.rb +0 -110
  482. data/lib/google/api_client/service/request.rb +0 -144
  483. data/lib/google/api_client/service/resource.rb +0 -40
  484. data/lib/google/api_client/service/result.rb +0 -162
  485. data/lib/google/api_client/service/simple_file_store.rb +0 -151
  486. data/lib/google/api_client/service/stub_generator.rb +0 -61
  487. data/lib/google/api_client/service.rb +0 -233
  488. data/lib/google/api_client.rb +0 -750
  489. data/spec/google/api_client/batch_spec.rb +0 -248
  490. data/spec/google/api_client/discovery_spec.rb +0 -662
  491. data/spec/google/api_client/gzip_spec.rb +0 -98
  492. data/spec/google/api_client/media_spec.rb +0 -178
  493. data/spec/google/api_client/result_spec.rb +0 -207
  494. data/spec/google/api_client/service_account_spec.rb +0 -169
  495. data/spec/google/api_client/service_spec.rb +0 -618
  496. data/spec/google/api_client/simple_file_store_spec.rb +0 -133
  497. data/spec/google/api_client_spec.rb +0 -352
@@ -0,0 +1,1676 @@
1
+ # Copyright 2015 Google Inc.
2
+ #
3
+ # Licensed under the Apache License, Version 2.0 (the "License");
4
+ # you may not use this file except in compliance with the License.
5
+ # You may obtain a copy of the License at
6
+ #
7
+ # http://www.apache.org/licenses/LICENSE-2.0
8
+ #
9
+ # Unless required by applicable law or agreed to in writing, software
10
+ # distributed under the License is distributed on an "AS IS" BASIS,
11
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
+ # See the License for the specific language governing permissions and
13
+ # limitations under the License.
14
+
15
+ require 'google/apis/core/base_service'
16
+ require 'google/apis/core/json_representation'
17
+ require 'google/apis/core/hashable'
18
+ require 'google/apis/errors'
19
+
20
+ module Google
21
+ module Apis
22
+ module GenomicsV1
23
+ # Genomics API
24
+ #
25
+ # An API to store, process, explore, and share genomic data. It supports
26
+ # reference-based alignements, genetic variants, and reference genomes. This API
27
+ # provides an implementation of the Global Alliance for Genomics and Health (
28
+ # GA4GH) v0.5.1 API as well as several extensions.
29
+ #
30
+ # @example
31
+ # require 'google/apis/genomics_v1'
32
+ #
33
+ # Genomics = Google::Apis::GenomicsV1 # Alias the module
34
+ # service = Genomics::GenomicsService.new
35
+ #
36
+ # @see
37
+ class GenomicsService < Google::Apis::Core::BaseService
38
+ # @return [String]
39
+ # API key. Your API key identifies your project and provides you with API access,
40
+ # quota, and reports. Required unless you provide an OAuth 2.0 token.
41
+ attr_accessor :key
42
+
43
+ # @return [String]
44
+ # Available to use for quota purposes for server-side applications. Can be any
45
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
46
+ attr_accessor :quota_user
47
+
48
+ def initialize
49
+ super('https://genomics.googleapis.com/', '')
50
+ end
51
+
52
+ # Lists datasets within a project. For the definitions of datasets and other
53
+ # genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
54
+ # com/genomics/fundamentals-of-google-genomics)
55
+ # @param [String] project_id
56
+ # Required. The project to list datasets for.
57
+ # @param [Fixnum] page_size
58
+ # The maximum number of results to return in a single page. If unspecified,
59
+ # defaults to 50. The maximum value is 1024.
60
+ # @param [String] page_token
61
+ # The continuation token, which is used to page through large result sets. To
62
+ # get the next page of results, set this parameter to the value of `
63
+ # nextPageToken` from the previous response.
64
+ # @param [String] fields
65
+ # Selector specifying which fields to include in a partial response.
66
+ # @param [String] quota_user
67
+ # Available to use for quota purposes for server-side applications. Can be any
68
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
69
+ # @param [Google::Apis::RequestOptions] options
70
+ # Request-specific options
71
+ #
72
+ # @yield [result, err] Result & error if block supplied
73
+ # @yieldparam result [Google::Apis::GenomicsV1::ListDatasetsResponse] parsed result object
74
+ # @yieldparam err [StandardError] error object if request failed
75
+ #
76
+ # @return [Google::Apis::GenomicsV1::ListDatasetsResponse]
77
+ #
78
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
79
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
80
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
81
+ def list_datasets(project_id: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil, &block)
82
+ command = make_simple_command(:get, 'v1/datasets', options)
83
+ command.response_representation = Google::Apis::GenomicsV1::ListDatasetsResponse::Representation
84
+ command.response_class = Google::Apis::GenomicsV1::ListDatasetsResponse
85
+ command.query['projectId'] = project_id unless project_id.nil?
86
+ command.query['pageSize'] = page_size unless page_size.nil?
87
+ command.query['pageToken'] = page_token unless page_token.nil?
88
+ command.query['fields'] = fields unless fields.nil?
89
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
90
+ execute_or_queue_command(command, &block)
91
+ end
92
+
93
+ # Creates a new dataset. For the definitions of datasets and other genomics
94
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
95
+ # genomics/fundamentals-of-google-genomics)
96
+ # @param [Google::Apis::GenomicsV1::Dataset] dataset_object
97
+ # @param [String] fields
98
+ # Selector specifying which fields to include in a partial response.
99
+ # @param [String] quota_user
100
+ # Available to use for quota purposes for server-side applications. Can be any
101
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
102
+ # @param [Google::Apis::RequestOptions] options
103
+ # Request-specific options
104
+ #
105
+ # @yield [result, err] Result & error if block supplied
106
+ # @yieldparam result [Google::Apis::GenomicsV1::Dataset] parsed result object
107
+ # @yieldparam err [StandardError] error object if request failed
108
+ #
109
+ # @return [Google::Apis::GenomicsV1::Dataset]
110
+ #
111
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
112
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
113
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
114
+ def create_dataset(dataset_object = nil, fields: nil, quota_user: nil, options: nil, &block)
115
+ command = make_simple_command(:post, 'v1/datasets', options)
116
+ command.request_representation = Google::Apis::GenomicsV1::Dataset::Representation
117
+ command.request_object = dataset_object
118
+ command.response_representation = Google::Apis::GenomicsV1::Dataset::Representation
119
+ command.response_class = Google::Apis::GenomicsV1::Dataset
120
+ command.query['fields'] = fields unless fields.nil?
121
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
122
+ execute_or_queue_command(command, &block)
123
+ end
124
+
125
+ # Gets a dataset by ID. For the definitions of datasets and other genomics
126
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
127
+ # genomics/fundamentals-of-google-genomics)
128
+ # @param [String] dataset_id
129
+ # The ID of the dataset.
130
+ # @param [String] fields
131
+ # Selector specifying which fields to include in a partial response.
132
+ # @param [String] quota_user
133
+ # Available to use for quota purposes for server-side applications. Can be any
134
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
135
+ # @param [Google::Apis::RequestOptions] options
136
+ # Request-specific options
137
+ #
138
+ # @yield [result, err] Result & error if block supplied
139
+ # @yieldparam result [Google::Apis::GenomicsV1::Dataset] parsed result object
140
+ # @yieldparam err [StandardError] error object if request failed
141
+ #
142
+ # @return [Google::Apis::GenomicsV1::Dataset]
143
+ #
144
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
145
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
146
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
147
+ def get_dataset(dataset_id, fields: nil, quota_user: nil, options: nil, &block)
148
+ command = make_simple_command(:get, 'v1/datasets/{datasetId}', options)
149
+ command.response_representation = Google::Apis::GenomicsV1::Dataset::Representation
150
+ command.response_class = Google::Apis::GenomicsV1::Dataset
151
+ command.params['datasetId'] = dataset_id unless dataset_id.nil?
152
+ command.query['fields'] = fields unless fields.nil?
153
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
154
+ execute_or_queue_command(command, &block)
155
+ end
156
+
157
+ # Updates a dataset. For the definitions of datasets and other genomics
158
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
159
+ # genomics/fundamentals-of-google-genomics) This method supports patch semantics.
160
+ # @param [String] dataset_id
161
+ # The ID of the dataset to be updated.
162
+ # @param [Google::Apis::GenomicsV1::Dataset] dataset_object
163
+ # @param [String] update_mask
164
+ # An optional mask specifying which fields to update. At this time, the only
165
+ # mutable field is name. The only acceptable value is "name". If unspecified,
166
+ # all mutable fields will be updated.
167
+ # @param [String] fields
168
+ # Selector specifying which fields to include in a partial response.
169
+ # @param [String] quota_user
170
+ # Available to use for quota purposes for server-side applications. Can be any
171
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
172
+ # @param [Google::Apis::RequestOptions] options
173
+ # Request-specific options
174
+ #
175
+ # @yield [result, err] Result & error if block supplied
176
+ # @yieldparam result [Google::Apis::GenomicsV1::Dataset] parsed result object
177
+ # @yieldparam err [StandardError] error object if request failed
178
+ #
179
+ # @return [Google::Apis::GenomicsV1::Dataset]
180
+ #
181
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
182
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
183
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
184
+ def patch_dataset(dataset_id, dataset_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block)
185
+ command = make_simple_command(:patch, 'v1/datasets/{datasetId}', options)
186
+ command.request_representation = Google::Apis::GenomicsV1::Dataset::Representation
187
+ command.request_object = dataset_object
188
+ command.response_representation = Google::Apis::GenomicsV1::Dataset::Representation
189
+ command.response_class = Google::Apis::GenomicsV1::Dataset
190
+ command.params['datasetId'] = dataset_id unless dataset_id.nil?
191
+ command.query['updateMask'] = update_mask unless update_mask.nil?
192
+ command.query['fields'] = fields unless fields.nil?
193
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
194
+ execute_or_queue_command(command, &block)
195
+ end
196
+
197
+ # Deletes a dataset. For the definitions of datasets and other genomics
198
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
199
+ # genomics/fundamentals-of-google-genomics)
200
+ # @param [String] dataset_id
201
+ # The ID of the dataset to be deleted.
202
+ # @param [String] fields
203
+ # Selector specifying which fields to include in a partial response.
204
+ # @param [String] quota_user
205
+ # Available to use for quota purposes for server-side applications. Can be any
206
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
207
+ # @param [Google::Apis::RequestOptions] options
208
+ # Request-specific options
209
+ #
210
+ # @yield [result, err] Result & error if block supplied
211
+ # @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
212
+ # @yieldparam err [StandardError] error object if request failed
213
+ #
214
+ # @return [Google::Apis::GenomicsV1::Empty]
215
+ #
216
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
217
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
218
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
219
+ def delete_dataset(dataset_id, fields: nil, quota_user: nil, options: nil, &block)
220
+ command = make_simple_command(:delete, 'v1/datasets/{datasetId}', options)
221
+ command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
222
+ command.response_class = Google::Apis::GenomicsV1::Empty
223
+ command.params['datasetId'] = dataset_id unless dataset_id.nil?
224
+ command.query['fields'] = fields unless fields.nil?
225
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
226
+ execute_or_queue_command(command, &block)
227
+ end
228
+
229
+ # Undeletes a dataset by restoring a dataset which was deleted via this API. For
230
+ # the definitions of datasets and other genomics resources, see [Fundamentals of
231
+ # Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
232
+ # genomics) This operation is only possible for a week after the deletion
233
+ # occurred.
234
+ # @param [String] dataset_id
235
+ # The ID of the dataset to be undeleted.
236
+ # @param [Google::Apis::GenomicsV1::UndeleteDatasetRequest] undelete_dataset_request_object
237
+ # @param [String] fields
238
+ # Selector specifying which fields to include in a partial response.
239
+ # @param [String] quota_user
240
+ # Available to use for quota purposes for server-side applications. Can be any
241
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
242
+ # @param [Google::Apis::RequestOptions] options
243
+ # Request-specific options
244
+ #
245
+ # @yield [result, err] Result & error if block supplied
246
+ # @yieldparam result [Google::Apis::GenomicsV1::Dataset] parsed result object
247
+ # @yieldparam err [StandardError] error object if request failed
248
+ #
249
+ # @return [Google::Apis::GenomicsV1::Dataset]
250
+ #
251
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
252
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
253
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
254
+ def undelete_dataset(dataset_id, undelete_dataset_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
255
+ command = make_simple_command(:post, 'v1/datasets/{datasetId}:undelete', options)
256
+ command.request_representation = Google::Apis::GenomicsV1::UndeleteDatasetRequest::Representation
257
+ command.request_object = undelete_dataset_request_object
258
+ command.response_representation = Google::Apis::GenomicsV1::Dataset::Representation
259
+ command.response_class = Google::Apis::GenomicsV1::Dataset
260
+ command.params['datasetId'] = dataset_id unless dataset_id.nil?
261
+ command.query['fields'] = fields unless fields.nil?
262
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
263
+ execute_or_queue_command(command, &block)
264
+ end
265
+
266
+ # Sets the access control policy on the specified dataset. Replaces any existing
267
+ # policy. For the definitions of datasets and other genomics resources, see [
268
+ # Fundamentals of Google Genomics](https://cloud.google.com/genomics/
269
+ # fundamentals-of-google-genomics) See Setting a Policy for more information.
270
+ # @param [String] resource
271
+ # REQUIRED: The resource for which policy is being specified. Format is `
272
+ # datasets/`.
273
+ # @param [Google::Apis::GenomicsV1::SetIamPolicyRequest] set_iam_policy_request_object
274
+ # @param [String] fields
275
+ # Selector specifying which fields to include in a partial response.
276
+ # @param [String] quota_user
277
+ # Available to use for quota purposes for server-side applications. Can be any
278
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
279
+ # @param [Google::Apis::RequestOptions] options
280
+ # Request-specific options
281
+ #
282
+ # @yield [result, err] Result & error if block supplied
283
+ # @yieldparam result [Google::Apis::GenomicsV1::Policy] parsed result object
284
+ # @yieldparam err [StandardError] error object if request failed
285
+ #
286
+ # @return [Google::Apis::GenomicsV1::Policy]
287
+ #
288
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
289
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
290
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
291
+ def set_dataset_iam_policy(resource, set_iam_policy_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
292
+ command = make_simple_command(:post, 'v1/{+resource}:setIamPolicy', options)
293
+ command.request_representation = Google::Apis::GenomicsV1::SetIamPolicyRequest::Representation
294
+ command.request_object = set_iam_policy_request_object
295
+ command.response_representation = Google::Apis::GenomicsV1::Policy::Representation
296
+ command.response_class = Google::Apis::GenomicsV1::Policy
297
+ command.params['resource'] = resource unless resource.nil?
298
+ command.query['fields'] = fields unless fields.nil?
299
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
300
+ execute_or_queue_command(command, &block)
301
+ end
302
+
303
+ # Gets the access control policy for the dataset. This is empty if the policy or
304
+ # resource does not exist. See Getting a Policy for more information. For the
305
+ # definitions of datasets and other genomics resources, see [Fundamentals of
306
+ # Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
307
+ # genomics)
308
+ # @param [String] resource
309
+ # REQUIRED: The resource for which policy is being specified. Format is `
310
+ # datasets/`.
311
+ # @param [Google::Apis::GenomicsV1::GetIamPolicyRequest] get_iam_policy_request_object
312
+ # @param [String] fields
313
+ # Selector specifying which fields to include in a partial response.
314
+ # @param [String] quota_user
315
+ # Available to use for quota purposes for server-side applications. Can be any
316
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
317
+ # @param [Google::Apis::RequestOptions] options
318
+ # Request-specific options
319
+ #
320
+ # @yield [result, err] Result & error if block supplied
321
+ # @yieldparam result [Google::Apis::GenomicsV1::Policy] parsed result object
322
+ # @yieldparam err [StandardError] error object if request failed
323
+ #
324
+ # @return [Google::Apis::GenomicsV1::Policy]
325
+ #
326
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
327
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
328
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
329
+ def get_dataset_iam_policy(resource, get_iam_policy_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
330
+ command = make_simple_command(:post, 'v1/{+resource}:getIamPolicy', options)
331
+ command.request_representation = Google::Apis::GenomicsV1::GetIamPolicyRequest::Representation
332
+ command.request_object = get_iam_policy_request_object
333
+ command.response_representation = Google::Apis::GenomicsV1::Policy::Representation
334
+ command.response_class = Google::Apis::GenomicsV1::Policy
335
+ command.params['resource'] = resource unless resource.nil?
336
+ command.query['fields'] = fields unless fields.nil?
337
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
338
+ execute_or_queue_command(command, &block)
339
+ end
340
+
341
+ # Returns permissions that a caller has on the specified resource. See Testing
342
+ # Permissions for more information. For the definitions of datasets and other
343
+ # genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
344
+ # com/genomics/fundamentals-of-google-genomics)
345
+ # @param [String] resource
346
+ # REQUIRED: The resource for which policy is being specified. Format is `
347
+ # datasets/`.
348
+ # @param [Google::Apis::GenomicsV1::TestIamPermissionsRequest] test_iam_permissions_request_object
349
+ # @param [String] fields
350
+ # Selector specifying which fields to include in a partial response.
351
+ # @param [String] quota_user
352
+ # Available to use for quota purposes for server-side applications. Can be any
353
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
354
+ # @param [Google::Apis::RequestOptions] options
355
+ # Request-specific options
356
+ #
357
+ # @yield [result, err] Result & error if block supplied
358
+ # @yieldparam result [Google::Apis::GenomicsV1::TestIamPermissionsResponse] parsed result object
359
+ # @yieldparam err [StandardError] error object if request failed
360
+ #
361
+ # @return [Google::Apis::GenomicsV1::TestIamPermissionsResponse]
362
+ #
363
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
364
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
365
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
366
+ def test_dataset_iam_permissions(resource, test_iam_permissions_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
367
+ command = make_simple_command(:post, 'v1/{+resource}:testIamPermissions', options)
368
+ command.request_representation = Google::Apis::GenomicsV1::TestIamPermissionsRequest::Representation
369
+ command.request_object = test_iam_permissions_request_object
370
+ command.response_representation = Google::Apis::GenomicsV1::TestIamPermissionsResponse::Representation
371
+ command.response_class = Google::Apis::GenomicsV1::TestIamPermissionsResponse
372
+ command.params['resource'] = resource unless resource.nil?
373
+ command.query['fields'] = fields unless fields.nil?
374
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
375
+ execute_or_queue_command(command, &block)
376
+ end
377
+
378
+ # Gets the latest state of a long-running operation. Clients can use this method
379
+ # to poll the operation result at intervals as recommended by the API service.
380
+ # @param [String] name
381
+ # The name of the operation resource.
382
+ # @param [String] fields
383
+ # Selector specifying which fields to include in a partial response.
384
+ # @param [String] quota_user
385
+ # Available to use for quota purposes for server-side applications. Can be any
386
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
387
+ # @param [Google::Apis::RequestOptions] options
388
+ # Request-specific options
389
+ #
390
+ # @yield [result, err] Result & error if block supplied
391
+ # @yieldparam result [Google::Apis::GenomicsV1::Operation] parsed result object
392
+ # @yieldparam err [StandardError] error object if request failed
393
+ #
394
+ # @return [Google::Apis::GenomicsV1::Operation]
395
+ #
396
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
397
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
398
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
399
+ def get_operation(name, fields: nil, quota_user: nil, options: nil, &block)
400
+ command = make_simple_command(:get, 'v1/{+name}', options)
401
+ command.response_representation = Google::Apis::GenomicsV1::Operation::Representation
402
+ command.response_class = Google::Apis::GenomicsV1::Operation
403
+ command.params['name'] = name unless name.nil?
404
+ command.query['fields'] = fields unless fields.nil?
405
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
406
+ execute_or_queue_command(command, &block)
407
+ end
408
+
409
+ # Lists operations that match the specified filter in the request.
410
+ # @param [String] name
411
+ # The name of the operation collection.
412
+ # @param [String] filter
413
+ # A string for filtering Operations. The following filter fields are supported: *
414
+ # projectId: Required. Corresponds to OperationMetadata.projectId. * createTime:
415
+ # The time this job was created, in seconds from the [epoch](http://en.
416
+ # wikipedia.org/wiki/Unix_time). Can use `>=` and/or `= 1432140000` * `projectId
417
+ # = my-project AND createTime >= 1432140000 AND createTime <= 1432150000 AND
418
+ # status = RUNNING`
419
+ # @param [Fixnum] page_size
420
+ # The maximum number of results to return. If unspecified, defaults to 256. The
421
+ # maximum value is 2048.
422
+ # @param [String] page_token
423
+ # The standard list page token.
424
+ # @param [String] fields
425
+ # Selector specifying which fields to include in a partial response.
426
+ # @param [String] quota_user
427
+ # Available to use for quota purposes for server-side applications. Can be any
428
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
429
+ # @param [Google::Apis::RequestOptions] options
430
+ # Request-specific options
431
+ #
432
+ # @yield [result, err] Result & error if block supplied
433
+ # @yieldparam result [Google::Apis::GenomicsV1::ListOperationsResponse] parsed result object
434
+ # @yieldparam err [StandardError] error object if request failed
435
+ #
436
+ # @return [Google::Apis::GenomicsV1::ListOperationsResponse]
437
+ #
438
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
439
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
440
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
441
+ def list_operations(name, filter: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil, &block)
442
+ command = make_simple_command(:get, 'v1/{+name}', options)
443
+ command.response_representation = Google::Apis::GenomicsV1::ListOperationsResponse::Representation
444
+ command.response_class = Google::Apis::GenomicsV1::ListOperationsResponse
445
+ command.params['name'] = name unless name.nil?
446
+ command.query['filter'] = filter unless filter.nil?
447
+ command.query['pageSize'] = page_size unless page_size.nil?
448
+ command.query['pageToken'] = page_token unless page_token.nil?
449
+ command.query['fields'] = fields unless fields.nil?
450
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
451
+ execute_or_queue_command(command, &block)
452
+ end
453
+
454
+ # Starts asynchronous cancellation on a long-running operation. The server makes
455
+ # a best effort to cancel the operation, but success is not guaranteed. Clients
456
+ # may use Operations.GetOperation or Operations.ListOperations to check whether
457
+ # the cancellation succeeded or the operation completed despite cancellation.
458
+ # @param [String] name
459
+ # The name of the operation resource to be cancelled.
460
+ # @param [Google::Apis::GenomicsV1::CancelOperationRequest] cancel_operation_request_object
461
+ # @param [String] fields
462
+ # Selector specifying which fields to include in a partial response.
463
+ # @param [String] quota_user
464
+ # Available to use for quota purposes for server-side applications. Can be any
465
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
466
+ # @param [Google::Apis::RequestOptions] options
467
+ # Request-specific options
468
+ #
469
+ # @yield [result, err] Result & error if block supplied
470
+ # @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
471
+ # @yieldparam err [StandardError] error object if request failed
472
+ #
473
+ # @return [Google::Apis::GenomicsV1::Empty]
474
+ #
475
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
476
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
477
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
478
+ def cancel_operation(name, cancel_operation_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
479
+ command = make_simple_command(:post, 'v1/{+name}:cancel', options)
480
+ command.request_representation = Google::Apis::GenomicsV1::CancelOperationRequest::Representation
481
+ command.request_object = cancel_operation_request_object
482
+ command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
483
+ command.response_class = Google::Apis::GenomicsV1::Empty
484
+ command.params['name'] = name unless name.nil?
485
+ command.query['fields'] = fields unless fields.nil?
486
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
487
+ execute_or_queue_command(command, &block)
488
+ end
489
+
490
+ # Creates read group sets by asynchronously importing the provided information.
491
+ # For the definitions of read group sets and other genomics resources, see [
492
+ # Fundamentals of Google Genomics](https://cloud.google.com/genomics/
493
+ # fundamentals-of-google-genomics) The caller must have WRITE permissions to the
494
+ # dataset. ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf)
495
+ # import - Tags will be converted to strings - tag types are not preserved -
496
+ # Comments (`@CO`) in the input file header will not be preserved - Original
497
+ # header order of references (`@SQ`) will not be preserved - Any reverse
498
+ # stranded unmapped reads will be reverse complemented, and their qualities (
499
+ # also the "BQ" and "OQ" tags, if any) will be reversed - Unmapped reads will be
500
+ # stripped of positional information (reference name and position)
501
+ # @param [Google::Apis::GenomicsV1::ImportReadGroupSetsRequest] import_read_group_sets_request_object
502
+ # @param [String] fields
503
+ # Selector specifying which fields to include in a partial response.
504
+ # @param [String] quota_user
505
+ # Available to use for quota purposes for server-side applications. Can be any
506
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
507
+ # @param [Google::Apis::RequestOptions] options
508
+ # Request-specific options
509
+ #
510
+ # @yield [result, err] Result & error if block supplied
511
+ # @yieldparam result [Google::Apis::GenomicsV1::Operation] parsed result object
512
+ # @yieldparam err [StandardError] error object if request failed
513
+ #
514
+ # @return [Google::Apis::GenomicsV1::Operation]
515
+ #
516
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
517
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
518
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
519
+ def import_read_group_sets(import_read_group_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
520
+ command = make_simple_command(:post, 'v1/readgroupsets:import', options)
521
+ command.request_representation = Google::Apis::GenomicsV1::ImportReadGroupSetsRequest::Representation
522
+ command.request_object = import_read_group_sets_request_object
523
+ command.response_representation = Google::Apis::GenomicsV1::Operation::Representation
524
+ command.response_class = Google::Apis::GenomicsV1::Operation
525
+ command.query['fields'] = fields unless fields.nil?
526
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
527
+ execute_or_queue_command(command, &block)
528
+ end
529
+
530
+ # Exports a read group set to a BAM file in Google Cloud Storage. For the
531
+ # definitions of read group sets and other genomics resources, see [Fundamentals
532
+ # of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
533
+ # genomics) Note that currently there may be some differences between exported
534
+ # BAM files and the original BAM file at the time of import. See [
535
+ # ImportReadGroupSets](google.genomics.v1.ReadServiceV1.ImportReadGroupSets) for
536
+ # caveats.
537
+ # @param [String] read_group_set_id
538
+ # Required. The ID of the read group set to export. The caller must have READ
539
+ # access to this read group set.
540
+ # @param [Google::Apis::GenomicsV1::ExportReadGroupSetRequest] export_read_group_set_request_object
541
+ # @param [String] fields
542
+ # Selector specifying which fields to include in a partial response.
543
+ # @param [String] quota_user
544
+ # Available to use for quota purposes for server-side applications. Can be any
545
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
546
+ # @param [Google::Apis::RequestOptions] options
547
+ # Request-specific options
548
+ #
549
+ # @yield [result, err] Result & error if block supplied
550
+ # @yieldparam result [Google::Apis::GenomicsV1::Operation] parsed result object
551
+ # @yieldparam err [StandardError] error object if request failed
552
+ #
553
+ # @return [Google::Apis::GenomicsV1::Operation]
554
+ #
555
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
556
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
557
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
558
+ def export_read_group_sets(read_group_set_id, export_read_group_set_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
559
+ command = make_simple_command(:post, 'v1/readgroupsets/{readGroupSetId}:export', options)
560
+ command.request_representation = Google::Apis::GenomicsV1::ExportReadGroupSetRequest::Representation
561
+ command.request_object = export_read_group_set_request_object
562
+ command.response_representation = Google::Apis::GenomicsV1::Operation::Representation
563
+ command.response_class = Google::Apis::GenomicsV1::Operation
564
+ command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
565
+ command.query['fields'] = fields unless fields.nil?
566
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
567
+ execute_or_queue_command(command, &block)
568
+ end
569
+
570
+ # Searches for read group sets matching the criteria. For the definitions of
571
+ # read group sets and other genomics resources, see [Fundamentals of Google
572
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
573
+ # Implements [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/
574
+ # schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
575
+ # @param [Google::Apis::GenomicsV1::SearchReadGroupSetsRequest] search_read_group_sets_request_object
576
+ # @param [String] fields
577
+ # Selector specifying which fields to include in a partial response.
578
+ # @param [String] quota_user
579
+ # Available to use for quota purposes for server-side applications. Can be any
580
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
581
+ # @param [Google::Apis::RequestOptions] options
582
+ # Request-specific options
583
+ #
584
+ # @yield [result, err] Result & error if block supplied
585
+ # @yieldparam result [Google::Apis::GenomicsV1::SearchReadGroupSetsResponse] parsed result object
586
+ # @yieldparam err [StandardError] error object if request failed
587
+ #
588
+ # @return [Google::Apis::GenomicsV1::SearchReadGroupSetsResponse]
589
+ #
590
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
591
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
592
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
593
+ def search_read_group_sets(search_read_group_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
594
+ command = make_simple_command(:post, 'v1/readgroupsets/search', options)
595
+ command.request_representation = Google::Apis::GenomicsV1::SearchReadGroupSetsRequest::Representation
596
+ command.request_object = search_read_group_sets_request_object
597
+ command.response_representation = Google::Apis::GenomicsV1::SearchReadGroupSetsResponse::Representation
598
+ command.response_class = Google::Apis::GenomicsV1::SearchReadGroupSetsResponse
599
+ command.query['fields'] = fields unless fields.nil?
600
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
601
+ execute_or_queue_command(command, &block)
602
+ end
603
+
604
+ # Updates a read group set. For the definitions of read group sets and other
605
+ # genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
606
+ # com/genomics/fundamentals-of-google-genomics) This method supports patch
607
+ # semantics.
608
+ # @param [String] read_group_set_id
609
+ # The ID of the read group set to be updated. The caller must have WRITE
610
+ # permissions to the dataset associated with this read group set.
611
+ # @param [Google::Apis::GenomicsV1::ReadGroupSet] read_group_set_object
612
+ # @param [String] update_mask
613
+ # An optional mask specifying which fields to update. Supported fields: * name. *
614
+ # referenceSetId. Leaving `updateMask` unset is equivalent to specifying all
615
+ # mutable fields.
616
+ # @param [String] fields
617
+ # Selector specifying which fields to include in a partial response.
618
+ # @param [String] quota_user
619
+ # Available to use for quota purposes for server-side applications. Can be any
620
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
621
+ # @param [Google::Apis::RequestOptions] options
622
+ # Request-specific options
623
+ #
624
+ # @yield [result, err] Result & error if block supplied
625
+ # @yieldparam result [Google::Apis::GenomicsV1::ReadGroupSet] parsed result object
626
+ # @yieldparam err [StandardError] error object if request failed
627
+ #
628
+ # @return [Google::Apis::GenomicsV1::ReadGroupSet]
629
+ #
630
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
631
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
632
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
633
+ def patch_read_group_set(read_group_set_id, read_group_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block)
634
+ command = make_simple_command(:patch, 'v1/readgroupsets/{readGroupSetId}', options)
635
+ command.request_representation = Google::Apis::GenomicsV1::ReadGroupSet::Representation
636
+ command.request_object = read_group_set_object
637
+ command.response_representation = Google::Apis::GenomicsV1::ReadGroupSet::Representation
638
+ command.response_class = Google::Apis::GenomicsV1::ReadGroupSet
639
+ command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
640
+ command.query['updateMask'] = update_mask unless update_mask.nil?
641
+ command.query['fields'] = fields unless fields.nil?
642
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
643
+ execute_or_queue_command(command, &block)
644
+ end
645
+
646
+ # Deletes a read group set. For the definitions of read group sets and other
647
+ # genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
648
+ # com/genomics/fundamentals-of-google-genomics)
649
+ # @param [String] read_group_set_id
650
+ # The ID of the read group set to be deleted. The caller must have WRITE
651
+ # permissions to the dataset associated with this read group set.
652
+ # @param [String] fields
653
+ # Selector specifying which fields to include in a partial response.
654
+ # @param [String] quota_user
655
+ # Available to use for quota purposes for server-side applications. Can be any
656
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
657
+ # @param [Google::Apis::RequestOptions] options
658
+ # Request-specific options
659
+ #
660
+ # @yield [result, err] Result & error if block supplied
661
+ # @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
662
+ # @yieldparam err [StandardError] error object if request failed
663
+ #
664
+ # @return [Google::Apis::GenomicsV1::Empty]
665
+ #
666
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
667
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
668
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
669
+ def delete_read_group_set(read_group_set_id, fields: nil, quota_user: nil, options: nil, &block)
670
+ command = make_simple_command(:delete, 'v1/readgroupsets/{readGroupSetId}', options)
671
+ command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
672
+ command.response_class = Google::Apis::GenomicsV1::Empty
673
+ command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
674
+ command.query['fields'] = fields unless fields.nil?
675
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
676
+ execute_or_queue_command(command, &block)
677
+ end
678
+
679
+ # Gets a read group set by ID. For the definitions of read group sets and other
680
+ # genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
681
+ # com/genomics/fundamentals-of-google-genomics)
682
+ # @param [String] read_group_set_id
683
+ # The ID of the read group set.
684
+ # @param [String] fields
685
+ # Selector specifying which fields to include in a partial response.
686
+ # @param [String] quota_user
687
+ # Available to use for quota purposes for server-side applications. Can be any
688
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
689
+ # @param [Google::Apis::RequestOptions] options
690
+ # Request-specific options
691
+ #
692
+ # @yield [result, err] Result & error if block supplied
693
+ # @yieldparam result [Google::Apis::GenomicsV1::ReadGroupSet] parsed result object
694
+ # @yieldparam err [StandardError] error object if request failed
695
+ #
696
+ # @return [Google::Apis::GenomicsV1::ReadGroupSet]
697
+ #
698
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
699
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
700
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
701
+ def get_read_group_set(read_group_set_id, fields: nil, quota_user: nil, options: nil, &block)
702
+ command = make_simple_command(:get, 'v1/readgroupsets/{readGroupSetId}', options)
703
+ command.response_representation = Google::Apis::GenomicsV1::ReadGroupSet::Representation
704
+ command.response_class = Google::Apis::GenomicsV1::ReadGroupSet
705
+ command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
706
+ command.query['fields'] = fields unless fields.nil?
707
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
708
+ execute_or_queue_command(command, &block)
709
+ end
710
+
711
+ # Lists fixed width coverage buckets for a read group set, each of which
712
+ # correspond to a range of a reference sequence. Each bucket summarizes coverage
713
+ # information across its corresponding genomic range. For the definitions of
714
+ # read group sets and other genomics resources, see [Fundamentals of Google
715
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
716
+ # Coverage is defined as the number of reads which are aligned to a given base
717
+ # in the reference sequence. Coverage buckets are available at several
718
+ # precomputed bucket widths, enabling retrieval of various coverage 'zoom levels'
719
+ # . The caller must have READ permissions for the target read group set.
720
+ # @param [String] read_group_set_id
721
+ # Required. The ID of the read group set over which coverage is requested.
722
+ # @param [String] reference_name
723
+ # The name of the reference to query, within the reference set associated with
724
+ # this query. Optional.
725
+ # @param [String] start
726
+ # The start position of the range on the reference, 0-based inclusive. If
727
+ # specified, `referenceName` must also be specified. Defaults to 0.
728
+ # @param [String] end_
729
+ # The end position of the range on the reference, 0-based exclusive. If
730
+ # specified, `referenceName` must also be specified. If unset or 0, defaults to
731
+ # the length of the reference.
732
+ # @param [String] target_bucket_width
733
+ # The desired width of each reported coverage bucket in base pairs. This will be
734
+ # rounded down to the nearest precomputed bucket width; the value of which is
735
+ # returned as `bucketWidth` in the response. Defaults to infinity (each bucket
736
+ # spans an entire reference sequence) or the length of the target range, if
737
+ # specified. The smallest precomputed `bucketWidth` is currently 2048 base pairs;
738
+ # this is subject to change.
739
+ # @param [String] page_token
740
+ # The continuation token, which is used to page through large result sets. To
741
+ # get the next page of results, set this parameter to the value of `
742
+ # nextPageToken` from the previous response.
743
+ # @param [Fixnum] page_size
744
+ # The maximum number of results to return in a single page. If unspecified,
745
+ # defaults to 1024. The maximum value is 2048.
746
+ # @param [String] fields
747
+ # Selector specifying which fields to include in a partial response.
748
+ # @param [String] quota_user
749
+ # Available to use for quota purposes for server-side applications. Can be any
750
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
751
+ # @param [Google::Apis::RequestOptions] options
752
+ # Request-specific options
753
+ #
754
+ # @yield [result, err] Result & error if block supplied
755
+ # @yieldparam result [Google::Apis::GenomicsV1::ListCoverageBucketsResponse] parsed result object
756
+ # @yieldparam err [StandardError] error object if request failed
757
+ #
758
+ # @return [Google::Apis::GenomicsV1::ListCoverageBucketsResponse]
759
+ #
760
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
761
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
762
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
763
+ def list_coverage_buckets(read_group_set_id, reference_name: nil, start: nil, end_: nil, target_bucket_width: nil, page_token: nil, page_size: nil, fields: nil, quota_user: nil, options: nil, &block)
764
+ command = make_simple_command(:get, 'v1/readgroupsets/{readGroupSetId}/coveragebuckets', options)
765
+ command.response_representation = Google::Apis::GenomicsV1::ListCoverageBucketsResponse::Representation
766
+ command.response_class = Google::Apis::GenomicsV1::ListCoverageBucketsResponse
767
+ command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
768
+ command.query['referenceName'] = reference_name unless reference_name.nil?
769
+ command.query['start'] = start unless start.nil?
770
+ command.query['end'] = end_ unless end_.nil?
771
+ command.query['targetBucketWidth'] = target_bucket_width unless target_bucket_width.nil?
772
+ command.query['pageToken'] = page_token unless page_token.nil?
773
+ command.query['pageSize'] = page_size unless page_size.nil?
774
+ command.query['fields'] = fields unless fields.nil?
775
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
776
+ execute_or_queue_command(command, &block)
777
+ end
778
+
779
+ # Gets a list of reads for one or more read group sets. For the definitions of
780
+ # read group sets and other genomics resources, see [Fundamentals of Google
781
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
782
+ # Reads search operates over a genomic coordinate space of reference sequence &
783
+ # position defined over the reference sequences to which the requested read
784
+ # group sets are aligned. If a target positional range is specified, search
785
+ # returns all reads whose alignment to the reference genome overlap the range. A
786
+ # query which specifies only read group set IDs yields all reads in those read
787
+ # group sets, including unmapped reads. All reads returned (including reads on
788
+ # subsequent pages) are ordered by genomic coordinate (by reference sequence,
789
+ # then position). Reads with equivalent genomic coordinates are returned in an
790
+ # unspecified order. This order is consistent, such that two queries for the
791
+ # same content (regardless of page size) yield reads in the same order across
792
+ # their respective streams of paginated responses. Implements [GlobalAllianceApi.
793
+ # searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/
794
+ # avro/readmethods.avdl#L85).
795
+ # @param [Google::Apis::GenomicsV1::SearchReadsRequest] search_reads_request_object
796
+ # @param [String] fields
797
+ # Selector specifying which fields to include in a partial response.
798
+ # @param [String] quota_user
799
+ # Available to use for quota purposes for server-side applications. Can be any
800
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
801
+ # @param [Google::Apis::RequestOptions] options
802
+ # Request-specific options
803
+ #
804
+ # @yield [result, err] Result & error if block supplied
805
+ # @yieldparam result [Google::Apis::GenomicsV1::SearchReadsResponse] parsed result object
806
+ # @yieldparam err [StandardError] error object if request failed
807
+ #
808
+ # @return [Google::Apis::GenomicsV1::SearchReadsResponse]
809
+ #
810
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
811
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
812
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
813
+ def search_reads(search_reads_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
814
+ command = make_simple_command(:post, 'v1/reads/search', options)
815
+ command.request_representation = Google::Apis::GenomicsV1::SearchReadsRequest::Representation
816
+ command.request_object = search_reads_request_object
817
+ command.response_representation = Google::Apis::GenomicsV1::SearchReadsResponse::Representation
818
+ command.response_class = Google::Apis::GenomicsV1::SearchReadsResponse
819
+ command.query['fields'] = fields unless fields.nil?
820
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
821
+ execute_or_queue_command(command, &block)
822
+ end
823
+
824
+ # Returns a stream of all the reads matching the search request, ordered by
825
+ # reference name, position, and ID.
826
+ # @param [Google::Apis::GenomicsV1::StreamReadsRequest] stream_reads_request_object
827
+ # @param [String] fields
828
+ # Selector specifying which fields to include in a partial response.
829
+ # @param [String] quota_user
830
+ # Available to use for quota purposes for server-side applications. Can be any
831
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
832
+ # @param [Google::Apis::RequestOptions] options
833
+ # Request-specific options
834
+ #
835
+ # @yield [result, err] Result & error if block supplied
836
+ # @yieldparam result [Google::Apis::GenomicsV1::StreamReadsResponse] parsed result object
837
+ # @yieldparam err [StandardError] error object if request failed
838
+ #
839
+ # @return [Google::Apis::GenomicsV1::StreamReadsResponse]
840
+ #
841
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
842
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
843
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
844
+ def stream_reads(stream_reads_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
845
+ command = make_simple_command(:post, 'v1/reads:stream', options)
846
+ command.request_representation = Google::Apis::GenomicsV1::StreamReadsRequest::Representation
847
+ command.request_object = stream_reads_request_object
848
+ command.response_representation = Google::Apis::GenomicsV1::StreamReadsResponse::Representation
849
+ command.response_class = Google::Apis::GenomicsV1::StreamReadsResponse
850
+ command.query['fields'] = fields unless fields.nil?
851
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
852
+ execute_or_queue_command(command, &block)
853
+ end
854
+
855
+ # Searches for reference sets which match the given criteria. For the
856
+ # definitions of references and other genomics resources, see [Fundamentals of
857
+ # Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
858
+ # genomics) Implements [GlobalAllianceApi.searchReferenceSets](https://github.
859
+ # com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#
860
+ # L71)
861
+ # @param [Google::Apis::GenomicsV1::SearchReferenceSetsRequest] search_reference_sets_request_object
862
+ # @param [String] fields
863
+ # Selector specifying which fields to include in a partial response.
864
+ # @param [String] quota_user
865
+ # Available to use for quota purposes for server-side applications. Can be any
866
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
867
+ # @param [Google::Apis::RequestOptions] options
868
+ # Request-specific options
869
+ #
870
+ # @yield [result, err] Result & error if block supplied
871
+ # @yieldparam result [Google::Apis::GenomicsV1::SearchReferenceSetsResponse] parsed result object
872
+ # @yieldparam err [StandardError] error object if request failed
873
+ #
874
+ # @return [Google::Apis::GenomicsV1::SearchReferenceSetsResponse]
875
+ #
876
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
877
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
878
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
879
+ def search_reference_sets(search_reference_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
880
+ command = make_simple_command(:post, 'v1/referencesets/search', options)
881
+ command.request_representation = Google::Apis::GenomicsV1::SearchReferenceSetsRequest::Representation
882
+ command.request_object = search_reference_sets_request_object
883
+ command.response_representation = Google::Apis::GenomicsV1::SearchReferenceSetsResponse::Representation
884
+ command.response_class = Google::Apis::GenomicsV1::SearchReferenceSetsResponse
885
+ command.query['fields'] = fields unless fields.nil?
886
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
887
+ execute_or_queue_command(command, &block)
888
+ end
889
+
890
+ # Gets a reference set. For the definitions of references and other genomics
891
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
892
+ # genomics/fundamentals-of-google-genomics) Implements [GlobalAllianceApi.
893
+ # getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/
894
+ # resources/avro/referencemethods.avdl#L83).
895
+ # @param [String] reference_set_id
896
+ # The ID of the reference set.
897
+ # @param [String] fields
898
+ # Selector specifying which fields to include in a partial response.
899
+ # @param [String] quota_user
900
+ # Available to use for quota purposes for server-side applications. Can be any
901
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
902
+ # @param [Google::Apis::RequestOptions] options
903
+ # Request-specific options
904
+ #
905
+ # @yield [result, err] Result & error if block supplied
906
+ # @yieldparam result [Google::Apis::GenomicsV1::ReferenceSet] parsed result object
907
+ # @yieldparam err [StandardError] error object if request failed
908
+ #
909
+ # @return [Google::Apis::GenomicsV1::ReferenceSet]
910
+ #
911
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
912
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
913
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
914
+ def get_reference_set(reference_set_id, fields: nil, quota_user: nil, options: nil, &block)
915
+ command = make_simple_command(:get, 'v1/referencesets/{referenceSetId}', options)
916
+ command.response_representation = Google::Apis::GenomicsV1::ReferenceSet::Representation
917
+ command.response_class = Google::Apis::GenomicsV1::ReferenceSet
918
+ command.params['referenceSetId'] = reference_set_id unless reference_set_id.nil?
919
+ command.query['fields'] = fields unless fields.nil?
920
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
921
+ execute_or_queue_command(command, &block)
922
+ end
923
+
924
+ # Searches for references which match the given criteria. For the definitions of
925
+ # references and other genomics resources, see [Fundamentals of Google Genomics](
926
+ # https://cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [
927
+ # GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.
928
+ # 1/src/main/resources/avro/referencemethods.avdl#L146).
929
+ # @param [Google::Apis::GenomicsV1::SearchReferencesRequest] search_references_request_object
930
+ # @param [String] fields
931
+ # Selector specifying which fields to include in a partial response.
932
+ # @param [String] quota_user
933
+ # Available to use for quota purposes for server-side applications. Can be any
934
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
935
+ # @param [Google::Apis::RequestOptions] options
936
+ # Request-specific options
937
+ #
938
+ # @yield [result, err] Result & error if block supplied
939
+ # @yieldparam result [Google::Apis::GenomicsV1::SearchReferencesResponse] parsed result object
940
+ # @yieldparam err [StandardError] error object if request failed
941
+ #
942
+ # @return [Google::Apis::GenomicsV1::SearchReferencesResponse]
943
+ #
944
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
945
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
946
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
947
+ def search_references(search_references_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
948
+ command = make_simple_command(:post, 'v1/references/search', options)
949
+ command.request_representation = Google::Apis::GenomicsV1::SearchReferencesRequest::Representation
950
+ command.request_object = search_references_request_object
951
+ command.response_representation = Google::Apis::GenomicsV1::SearchReferencesResponse::Representation
952
+ command.response_class = Google::Apis::GenomicsV1::SearchReferencesResponse
953
+ command.query['fields'] = fields unless fields.nil?
954
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
955
+ execute_or_queue_command(command, &block)
956
+ end
957
+
958
+ # Gets a reference. For the definitions of references and other genomics
959
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
960
+ # genomics/fundamentals-of-google-genomics) Implements [GlobalAllianceApi.
961
+ # getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/
962
+ # avro/referencemethods.avdl#L158).
963
+ # @param [String] reference_id
964
+ # The ID of the reference.
965
+ # @param [String] fields
966
+ # Selector specifying which fields to include in a partial response.
967
+ # @param [String] quota_user
968
+ # Available to use for quota purposes for server-side applications. Can be any
969
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
970
+ # @param [Google::Apis::RequestOptions] options
971
+ # Request-specific options
972
+ #
973
+ # @yield [result, err] Result & error if block supplied
974
+ # @yieldparam result [Google::Apis::GenomicsV1::Reference] parsed result object
975
+ # @yieldparam err [StandardError] error object if request failed
976
+ #
977
+ # @return [Google::Apis::GenomicsV1::Reference]
978
+ #
979
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
980
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
981
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
982
+ def get_reference(reference_id, fields: nil, quota_user: nil, options: nil, &block)
983
+ command = make_simple_command(:get, 'v1/references/{referenceId}', options)
984
+ command.response_representation = Google::Apis::GenomicsV1::Reference::Representation
985
+ command.response_class = Google::Apis::GenomicsV1::Reference
986
+ command.params['referenceId'] = reference_id unless reference_id.nil?
987
+ command.query['fields'] = fields unless fields.nil?
988
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
989
+ execute_or_queue_command(command, &block)
990
+ end
991
+
992
+ # Lists the bases in a reference, optionally restricted to a range. For the
993
+ # definitions of references and other genomics resources, see [Fundamentals of
994
+ # Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
995
+ # genomics) Implements [GlobalAllianceApi.getReferenceBases](https://github.com/
996
+ # ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
997
+ # @param [String] reference_id
998
+ # The ID of the reference.
999
+ # @param [String] start_position
1000
+ # The start position (0-based) of this query. Defaults to 0.
1001
+ # @param [String] end_position
1002
+ # The end position (0-based, exclusive) of this query. Defaults to the length of
1003
+ # this reference.
1004
+ # @param [String] page_token
1005
+ # The continuation token, which is used to page through large result sets. To
1006
+ # get the next page of results, set this parameter to the value of `
1007
+ # nextPageToken` from the previous response.
1008
+ # @param [Fixnum] page_size
1009
+ # The maximum number of bases to return in a single page. If unspecified,
1010
+ # defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base
1011
+ # pairs).
1012
+ # @param [String] fields
1013
+ # Selector specifying which fields to include in a partial response.
1014
+ # @param [String] quota_user
1015
+ # Available to use for quota purposes for server-side applications. Can be any
1016
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1017
+ # @param [Google::Apis::RequestOptions] options
1018
+ # Request-specific options
1019
+ #
1020
+ # @yield [result, err] Result & error if block supplied
1021
+ # @yieldparam result [Google::Apis::GenomicsV1::ListBasesResponse] parsed result object
1022
+ # @yieldparam err [StandardError] error object if request failed
1023
+ #
1024
+ # @return [Google::Apis::GenomicsV1::ListBasesResponse]
1025
+ #
1026
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1027
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1028
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1029
+ def list_reference_bases(reference_id, start_position: nil, end_position: nil, page_token: nil, page_size: nil, fields: nil, quota_user: nil, options: nil, &block)
1030
+ command = make_simple_command(:get, 'v1/references/{referenceId}/bases', options)
1031
+ command.response_representation = Google::Apis::GenomicsV1::ListBasesResponse::Representation
1032
+ command.response_class = Google::Apis::GenomicsV1::ListBasesResponse
1033
+ command.params['referenceId'] = reference_id unless reference_id.nil?
1034
+ command.query['start'] = start_position unless start_position.nil?
1035
+ command.query['end'] = end_position unless end_position.nil?
1036
+ command.query['pageToken'] = page_token unless page_token.nil?
1037
+ command.query['pageSize'] = page_size unless page_size.nil?
1038
+ command.query['fields'] = fields unless fields.nil?
1039
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1040
+ execute_or_queue_command(command, &block)
1041
+ end
1042
+
1043
+ # Creates variant data by asynchronously importing the provided information. For
1044
+ # the definitions of variant sets and other genomics resources, see [
1045
+ # Fundamentals of Google Genomics](https://cloud.google.com/genomics/
1046
+ # fundamentals-of-google-genomics) The variants for import will be merged with
1047
+ # any existing variant that matches its reference sequence, start, end,
1048
+ # reference bases, and alternative bases. If no such variant exists, a new one
1049
+ # will be created. When variants are merged, the call information from the new
1050
+ # variant is added to the existing variant, and other fields (such as key/value
1051
+ # pairs) are discarded. In particular, this means for merged VCF variants that
1052
+ # have conflicting INFO fields, some data will be arbitrarily discarded. As a
1053
+ # special case, for single-sample VCF files, QUAL and FILTER fields will be
1054
+ # moved to the call level; these are sometimes interpreted in a call-specific
1055
+ # context. Imported VCF headers are appended to the metadata already in a
1056
+ # variant set.
1057
+ # @param [Google::Apis::GenomicsV1::ImportVariantsRequest] import_variants_request_object
1058
+ # @param [String] fields
1059
+ # Selector specifying which fields to include in a partial response.
1060
+ # @param [String] quota_user
1061
+ # Available to use for quota purposes for server-side applications. Can be any
1062
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1063
+ # @param [Google::Apis::RequestOptions] options
1064
+ # Request-specific options
1065
+ #
1066
+ # @yield [result, err] Result & error if block supplied
1067
+ # @yieldparam result [Google::Apis::GenomicsV1::Operation] parsed result object
1068
+ # @yieldparam err [StandardError] error object if request failed
1069
+ #
1070
+ # @return [Google::Apis::GenomicsV1::Operation]
1071
+ #
1072
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1073
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1074
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1075
+ def import_variants(import_variants_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
1076
+ command = make_simple_command(:post, 'v1/variants:import', options)
1077
+ command.request_representation = Google::Apis::GenomicsV1::ImportVariantsRequest::Representation
1078
+ command.request_object = import_variants_request_object
1079
+ command.response_representation = Google::Apis::GenomicsV1::Operation::Representation
1080
+ command.response_class = Google::Apis::GenomicsV1::Operation
1081
+ command.query['fields'] = fields unless fields.nil?
1082
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1083
+ execute_or_queue_command(command, &block)
1084
+ end
1085
+
1086
+ # Gets a list of variants matching the criteria. For the definitions of variants
1087
+ # and other genomics resources, see [Fundamentals of Google Genomics](https://
1088
+ # cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [
1089
+ # GlobalAllianceApi.searchVariants](https://github.com/ga4gh/schemas/blob/v0.5.1/
1090
+ # src/main/resources/avro/variantmethods.avdl#L126).
1091
+ # @param [Google::Apis::GenomicsV1::SearchVariantsRequest] search_variants_request_object
1092
+ # @param [String] fields
1093
+ # Selector specifying which fields to include in a partial response.
1094
+ # @param [String] quota_user
1095
+ # Available to use for quota purposes for server-side applications. Can be any
1096
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1097
+ # @param [Google::Apis::RequestOptions] options
1098
+ # Request-specific options
1099
+ #
1100
+ # @yield [result, err] Result & error if block supplied
1101
+ # @yieldparam result [Google::Apis::GenomicsV1::SearchVariantsResponse] parsed result object
1102
+ # @yieldparam err [StandardError] error object if request failed
1103
+ #
1104
+ # @return [Google::Apis::GenomicsV1::SearchVariantsResponse]
1105
+ #
1106
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1107
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1108
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1109
+ def search_variants(search_variants_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
1110
+ command = make_simple_command(:post, 'v1/variants/search', options)
1111
+ command.request_representation = Google::Apis::GenomicsV1::SearchVariantsRequest::Representation
1112
+ command.request_object = search_variants_request_object
1113
+ command.response_representation = Google::Apis::GenomicsV1::SearchVariantsResponse::Representation
1114
+ command.response_class = Google::Apis::GenomicsV1::SearchVariantsResponse
1115
+ command.query['fields'] = fields unless fields.nil?
1116
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1117
+ execute_or_queue_command(command, &block)
1118
+ end
1119
+
1120
+ # Creates a new variant. For the definitions of variants and other genomics
1121
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
1122
+ # genomics/fundamentals-of-google-genomics)
1123
+ # @param [Google::Apis::GenomicsV1::Variant] variant_object
1124
+ # @param [String] fields
1125
+ # Selector specifying which fields to include in a partial response.
1126
+ # @param [String] quota_user
1127
+ # Available to use for quota purposes for server-side applications. Can be any
1128
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1129
+ # @param [Google::Apis::RequestOptions] options
1130
+ # Request-specific options
1131
+ #
1132
+ # @yield [result, err] Result & error if block supplied
1133
+ # @yieldparam result [Google::Apis::GenomicsV1::Variant] parsed result object
1134
+ # @yieldparam err [StandardError] error object if request failed
1135
+ #
1136
+ # @return [Google::Apis::GenomicsV1::Variant]
1137
+ #
1138
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1139
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1140
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1141
+ def create_variant(variant_object = nil, fields: nil, quota_user: nil, options: nil, &block)
1142
+ command = make_simple_command(:post, 'v1/variants', options)
1143
+ command.request_representation = Google::Apis::GenomicsV1::Variant::Representation
1144
+ command.request_object = variant_object
1145
+ command.response_representation = Google::Apis::GenomicsV1::Variant::Representation
1146
+ command.response_class = Google::Apis::GenomicsV1::Variant
1147
+ command.query['fields'] = fields unless fields.nil?
1148
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1149
+ execute_or_queue_command(command, &block)
1150
+ end
1151
+
1152
+ # Updates a variant. For the definitions of variants and other genomics
1153
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
1154
+ # genomics/fundamentals-of-google-genomics) This method supports patch semantics.
1155
+ # Returns the modified variant without its calls.
1156
+ # @param [String] variant_id
1157
+ # The ID of the variant to be updated.
1158
+ # @param [Google::Apis::GenomicsV1::Variant] variant_object
1159
+ # @param [String] update_mask
1160
+ # An optional mask specifying which fields to update. At this time, mutable
1161
+ # fields are names and info. Acceptable values are "names" and "info". If
1162
+ # unspecified, all mutable fields will be updated.
1163
+ # @param [String] fields
1164
+ # Selector specifying which fields to include in a partial response.
1165
+ # @param [String] quota_user
1166
+ # Available to use for quota purposes for server-side applications. Can be any
1167
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1168
+ # @param [Google::Apis::RequestOptions] options
1169
+ # Request-specific options
1170
+ #
1171
+ # @yield [result, err] Result & error if block supplied
1172
+ # @yieldparam result [Google::Apis::GenomicsV1::Variant] parsed result object
1173
+ # @yieldparam err [StandardError] error object if request failed
1174
+ #
1175
+ # @return [Google::Apis::GenomicsV1::Variant]
1176
+ #
1177
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1178
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1179
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1180
+ def patch_variant(variant_id, variant_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block)
1181
+ command = make_simple_command(:patch, 'v1/variants/{variantId}', options)
1182
+ command.request_representation = Google::Apis::GenomicsV1::Variant::Representation
1183
+ command.request_object = variant_object
1184
+ command.response_representation = Google::Apis::GenomicsV1::Variant::Representation
1185
+ command.response_class = Google::Apis::GenomicsV1::Variant
1186
+ command.params['variantId'] = variant_id unless variant_id.nil?
1187
+ command.query['updateMask'] = update_mask unless update_mask.nil?
1188
+ command.query['fields'] = fields unless fields.nil?
1189
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1190
+ execute_or_queue_command(command, &block)
1191
+ end
1192
+
1193
+ # Deletes a variant. For the definitions of variants and other genomics
1194
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
1195
+ # genomics/fundamentals-of-google-genomics)
1196
+ # @param [String] variant_id
1197
+ # The ID of the variant to be deleted.
1198
+ # @param [String] fields
1199
+ # Selector specifying which fields to include in a partial response.
1200
+ # @param [String] quota_user
1201
+ # Available to use for quota purposes for server-side applications. Can be any
1202
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1203
+ # @param [Google::Apis::RequestOptions] options
1204
+ # Request-specific options
1205
+ #
1206
+ # @yield [result, err] Result & error if block supplied
1207
+ # @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
1208
+ # @yieldparam err [StandardError] error object if request failed
1209
+ #
1210
+ # @return [Google::Apis::GenomicsV1::Empty]
1211
+ #
1212
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1213
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1214
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1215
+ def delete_variant(variant_id, fields: nil, quota_user: nil, options: nil, &block)
1216
+ command = make_simple_command(:delete, 'v1/variants/{variantId}', options)
1217
+ command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
1218
+ command.response_class = Google::Apis::GenomicsV1::Empty
1219
+ command.params['variantId'] = variant_id unless variant_id.nil?
1220
+ command.query['fields'] = fields unless fields.nil?
1221
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1222
+ execute_or_queue_command(command, &block)
1223
+ end
1224
+
1225
+ # Gets a variant by ID. For the definitions of variants and other genomics
1226
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
1227
+ # genomics/fundamentals-of-google-genomics)
1228
+ # @param [String] variant_id
1229
+ # The ID of the variant.
1230
+ # @param [String] fields
1231
+ # Selector specifying which fields to include in a partial response.
1232
+ # @param [String] quota_user
1233
+ # Available to use for quota purposes for server-side applications. Can be any
1234
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1235
+ # @param [Google::Apis::RequestOptions] options
1236
+ # Request-specific options
1237
+ #
1238
+ # @yield [result, err] Result & error if block supplied
1239
+ # @yieldparam result [Google::Apis::GenomicsV1::Variant] parsed result object
1240
+ # @yieldparam err [StandardError] error object if request failed
1241
+ #
1242
+ # @return [Google::Apis::GenomicsV1::Variant]
1243
+ #
1244
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1245
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1246
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1247
+ def get_variant(variant_id, fields: nil, quota_user: nil, options: nil, &block)
1248
+ command = make_simple_command(:get, 'v1/variants/{variantId}', options)
1249
+ command.response_representation = Google::Apis::GenomicsV1::Variant::Representation
1250
+ command.response_class = Google::Apis::GenomicsV1::Variant
1251
+ command.params['variantId'] = variant_id unless variant_id.nil?
1252
+ command.query['fields'] = fields unless fields.nil?
1253
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1254
+ execute_or_queue_command(command, &block)
1255
+ end
1256
+
1257
+ # Returns a stream of all the variants matching the search request, ordered by
1258
+ # reference name, position, and ID.
1259
+ # @param [Google::Apis::GenomicsV1::StreamVariantsRequest] stream_variants_request_object
1260
+ # @param [String] fields
1261
+ # Selector specifying which fields to include in a partial response.
1262
+ # @param [String] quota_user
1263
+ # Available to use for quota purposes for server-side applications. Can be any
1264
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1265
+ # @param [Google::Apis::RequestOptions] options
1266
+ # Request-specific options
1267
+ #
1268
+ # @yield [result, err] Result & error if block supplied
1269
+ # @yieldparam result [Google::Apis::GenomicsV1::StreamVariantsResponse] parsed result object
1270
+ # @yieldparam err [StandardError] error object if request failed
1271
+ #
1272
+ # @return [Google::Apis::GenomicsV1::StreamVariantsResponse]
1273
+ #
1274
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1275
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1276
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1277
+ def stream_variants(stream_variants_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
1278
+ command = make_simple_command(:post, 'v1/variants:stream', options)
1279
+ command.request_representation = Google::Apis::GenomicsV1::StreamVariantsRequest::Representation
1280
+ command.request_object = stream_variants_request_object
1281
+ command.response_representation = Google::Apis::GenomicsV1::StreamVariantsResponse::Representation
1282
+ command.response_class = Google::Apis::GenomicsV1::StreamVariantsResponse
1283
+ command.query['fields'] = fields unless fields.nil?
1284
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1285
+ execute_or_queue_command(command, &block)
1286
+ end
1287
+
1288
+ # Creates a new variant set. For the definitions of variant sets and other
1289
+ # genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
1290
+ # com/genomics/fundamentals-of-google-genomics) The provided variant set must
1291
+ # have a valid `datasetId` set - all other fields are optional. Note that the `
1292
+ # id` field will be ignored, as this is assigned by the server.
1293
+ # @param [Google::Apis::GenomicsV1::VariantSet] variant_set_object
1294
+ # @param [String] fields
1295
+ # Selector specifying which fields to include in a partial response.
1296
+ # @param [String] quota_user
1297
+ # Available to use for quota purposes for server-side applications. Can be any
1298
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1299
+ # @param [Google::Apis::RequestOptions] options
1300
+ # Request-specific options
1301
+ #
1302
+ # @yield [result, err] Result & error if block supplied
1303
+ # @yieldparam result [Google::Apis::GenomicsV1::VariantSet] parsed result object
1304
+ # @yieldparam err [StandardError] error object if request failed
1305
+ #
1306
+ # @return [Google::Apis::GenomicsV1::VariantSet]
1307
+ #
1308
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1309
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1310
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1311
+ def create_variantset(variant_set_object = nil, fields: nil, quota_user: nil, options: nil, &block)
1312
+ command = make_simple_command(:post, 'v1/variantsets', options)
1313
+ command.request_representation = Google::Apis::GenomicsV1::VariantSet::Representation
1314
+ command.request_object = variant_set_object
1315
+ command.response_representation = Google::Apis::GenomicsV1::VariantSet::Representation
1316
+ command.response_class = Google::Apis::GenomicsV1::VariantSet
1317
+ command.query['fields'] = fields unless fields.nil?
1318
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1319
+ execute_or_queue_command(command, &block)
1320
+ end
1321
+
1322
+ # Exports variant set data to an external destination. For the definitions of
1323
+ # variant sets and other genomics resources, see [Fundamentals of Google
1324
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
1325
+ # @param [String] variant_set_id
1326
+ # Required. The ID of the variant set that contains variant data which should be
1327
+ # exported. The caller must have READ access to this variant set.
1328
+ # @param [Google::Apis::GenomicsV1::ExportVariantSetRequest] export_variant_set_request_object
1329
+ # @param [String] fields
1330
+ # Selector specifying which fields to include in a partial response.
1331
+ # @param [String] quota_user
1332
+ # Available to use for quota purposes for server-side applications. Can be any
1333
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1334
+ # @param [Google::Apis::RequestOptions] options
1335
+ # Request-specific options
1336
+ #
1337
+ # @yield [result, err] Result & error if block supplied
1338
+ # @yieldparam result [Google::Apis::GenomicsV1::Operation] parsed result object
1339
+ # @yieldparam err [StandardError] error object if request failed
1340
+ #
1341
+ # @return [Google::Apis::GenomicsV1::Operation]
1342
+ #
1343
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1344
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1345
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1346
+ def export_variant_set(variant_set_id, export_variant_set_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
1347
+ command = make_simple_command(:post, 'v1/variantsets/{variantSetId}:export', options)
1348
+ command.request_representation = Google::Apis::GenomicsV1::ExportVariantSetRequest::Representation
1349
+ command.request_object = export_variant_set_request_object
1350
+ command.response_representation = Google::Apis::GenomicsV1::Operation::Representation
1351
+ command.response_class = Google::Apis::GenomicsV1::Operation
1352
+ command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
1353
+ command.query['fields'] = fields unless fields.nil?
1354
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1355
+ execute_or_queue_command(command, &block)
1356
+ end
1357
+
1358
+ # Gets a variant set by ID. For the definitions of variant sets and other
1359
+ # genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
1360
+ # com/genomics/fundamentals-of-google-genomics)
1361
+ # @param [String] variant_set_id
1362
+ # Required. The ID of the variant set.
1363
+ # @param [String] fields
1364
+ # Selector specifying which fields to include in a partial response.
1365
+ # @param [String] quota_user
1366
+ # Available to use for quota purposes for server-side applications. Can be any
1367
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1368
+ # @param [Google::Apis::RequestOptions] options
1369
+ # Request-specific options
1370
+ #
1371
+ # @yield [result, err] Result & error if block supplied
1372
+ # @yieldparam result [Google::Apis::GenomicsV1::VariantSet] parsed result object
1373
+ # @yieldparam err [StandardError] error object if request failed
1374
+ #
1375
+ # @return [Google::Apis::GenomicsV1::VariantSet]
1376
+ #
1377
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1378
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1379
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1380
+ def get_variantset(variant_set_id, fields: nil, quota_user: nil, options: nil, &block)
1381
+ command = make_simple_command(:get, 'v1/variantsets/{variantSetId}', options)
1382
+ command.response_representation = Google::Apis::GenomicsV1::VariantSet::Representation
1383
+ command.response_class = Google::Apis::GenomicsV1::VariantSet
1384
+ command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
1385
+ command.query['fields'] = fields unless fields.nil?
1386
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1387
+ execute_or_queue_command(command, &block)
1388
+ end
1389
+
1390
+ # Returns a list of all variant sets matching search criteria. For the
1391
+ # definitions of variant sets and other genomics resources, see [Fundamentals of
1392
+ # Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
1393
+ # genomics) Implements [GlobalAllianceApi.searchVariantSets](https://github.com/
1394
+ # ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L49).
1395
+ # @param [Google::Apis::GenomicsV1::SearchVariantSetsRequest] search_variant_sets_request_object
1396
+ # @param [String] fields
1397
+ # Selector specifying which fields to include in a partial response.
1398
+ # @param [String] quota_user
1399
+ # Available to use for quota purposes for server-side applications. Can be any
1400
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1401
+ # @param [Google::Apis::RequestOptions] options
1402
+ # Request-specific options
1403
+ #
1404
+ # @yield [result, err] Result & error if block supplied
1405
+ # @yieldparam result [Google::Apis::GenomicsV1::SearchVariantSetsResponse] parsed result object
1406
+ # @yieldparam err [StandardError] error object if request failed
1407
+ #
1408
+ # @return [Google::Apis::GenomicsV1::SearchVariantSetsResponse]
1409
+ #
1410
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1411
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1412
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1413
+ def search_variant_sets(search_variant_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
1414
+ command = make_simple_command(:post, 'v1/variantsets/search', options)
1415
+ command.request_representation = Google::Apis::GenomicsV1::SearchVariantSetsRequest::Representation
1416
+ command.request_object = search_variant_sets_request_object
1417
+ command.response_representation = Google::Apis::GenomicsV1::SearchVariantSetsResponse::Representation
1418
+ command.response_class = Google::Apis::GenomicsV1::SearchVariantSetsResponse
1419
+ command.query['fields'] = fields unless fields.nil?
1420
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1421
+ execute_or_queue_command(command, &block)
1422
+ end
1423
+
1424
+ # Deletes the contents of a variant set. The variant set object is not deleted.
1425
+ # For the definitions of variant sets and other genomics resources, see [
1426
+ # Fundamentals of Google Genomics](https://cloud.google.com/genomics/
1427
+ # fundamentals-of-google-genomics)
1428
+ # @param [String] variant_set_id
1429
+ # The ID of the variant set to be deleted.
1430
+ # @param [String] fields
1431
+ # Selector specifying which fields to include in a partial response.
1432
+ # @param [String] quota_user
1433
+ # Available to use for quota purposes for server-side applications. Can be any
1434
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1435
+ # @param [Google::Apis::RequestOptions] options
1436
+ # Request-specific options
1437
+ #
1438
+ # @yield [result, err] Result & error if block supplied
1439
+ # @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
1440
+ # @yieldparam err [StandardError] error object if request failed
1441
+ #
1442
+ # @return [Google::Apis::GenomicsV1::Empty]
1443
+ #
1444
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1445
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1446
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1447
+ def delete_variantset(variant_set_id, fields: nil, quota_user: nil, options: nil, &block)
1448
+ command = make_simple_command(:delete, 'v1/variantsets/{variantSetId}', options)
1449
+ command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
1450
+ command.response_class = Google::Apis::GenomicsV1::Empty
1451
+ command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
1452
+ command.query['fields'] = fields unless fields.nil?
1453
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1454
+ execute_or_queue_command(command, &block)
1455
+ end
1456
+
1457
+ # Updates a variant set using patch semantics. For the definitions of variant
1458
+ # sets and other genomics resources, see [Fundamentals of Google Genomics](https:
1459
+ # //cloud.google.com/genomics/fundamentals-of-google-genomics)
1460
+ # @param [String] variant_set_id
1461
+ # The ID of the variant to be updated (must already exist).
1462
+ # @param [Google::Apis::GenomicsV1::VariantSet] variant_set_object
1463
+ # @param [String] update_mask
1464
+ # An optional mask specifying which fields to update. Supported fields: *
1465
+ # metadata. Leaving `updateMask` unset is equivalent to specifying all mutable
1466
+ # fields.
1467
+ # @param [String] fields
1468
+ # Selector specifying which fields to include in a partial response.
1469
+ # @param [String] quota_user
1470
+ # Available to use for quota purposes for server-side applications. Can be any
1471
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1472
+ # @param [Google::Apis::RequestOptions] options
1473
+ # Request-specific options
1474
+ #
1475
+ # @yield [result, err] Result & error if block supplied
1476
+ # @yieldparam result [Google::Apis::GenomicsV1::VariantSet] parsed result object
1477
+ # @yieldparam err [StandardError] error object if request failed
1478
+ #
1479
+ # @return [Google::Apis::GenomicsV1::VariantSet]
1480
+ #
1481
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1482
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1483
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1484
+ def patch_variantset(variant_set_id, variant_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block)
1485
+ command = make_simple_command(:patch, 'v1/variantsets/{variantSetId}', options)
1486
+ command.request_representation = Google::Apis::GenomicsV1::VariantSet::Representation
1487
+ command.request_object = variant_set_object
1488
+ command.response_representation = Google::Apis::GenomicsV1::VariantSet::Representation
1489
+ command.response_class = Google::Apis::GenomicsV1::VariantSet
1490
+ command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
1491
+ command.query['updateMask'] = update_mask unless update_mask.nil?
1492
+ command.query['fields'] = fields unless fields.nil?
1493
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1494
+ execute_or_queue_command(command, &block)
1495
+ end
1496
+
1497
+ # Gets a list of call sets matching the criteria. For the definitions of call
1498
+ # sets and other genomics resources, see [Fundamentals of Google Genomics](https:
1499
+ # //cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [
1500
+ # GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/
1501
+ # src/main/resources/avro/variantmethods.avdl#L178).
1502
+ # @param [Google::Apis::GenomicsV1::SearchCallSetsRequest] search_call_sets_request_object
1503
+ # @param [String] fields
1504
+ # Selector specifying which fields to include in a partial response.
1505
+ # @param [String] quota_user
1506
+ # Available to use for quota purposes for server-side applications. Can be any
1507
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1508
+ # @param [Google::Apis::RequestOptions] options
1509
+ # Request-specific options
1510
+ #
1511
+ # @yield [result, err] Result & error if block supplied
1512
+ # @yieldparam result [Google::Apis::GenomicsV1::SearchCallSetsResponse] parsed result object
1513
+ # @yieldparam err [StandardError] error object if request failed
1514
+ #
1515
+ # @return [Google::Apis::GenomicsV1::SearchCallSetsResponse]
1516
+ #
1517
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1518
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1519
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1520
+ def search_call_sets(search_call_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
1521
+ command = make_simple_command(:post, 'v1/callsets/search', options)
1522
+ command.request_representation = Google::Apis::GenomicsV1::SearchCallSetsRequest::Representation
1523
+ command.request_object = search_call_sets_request_object
1524
+ command.response_representation = Google::Apis::GenomicsV1::SearchCallSetsResponse::Representation
1525
+ command.response_class = Google::Apis::GenomicsV1::SearchCallSetsResponse
1526
+ command.query['fields'] = fields unless fields.nil?
1527
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1528
+ execute_or_queue_command(command, &block)
1529
+ end
1530
+
1531
+ # Creates a new call set. For the definitions of call sets and other genomics
1532
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
1533
+ # genomics/fundamentals-of-google-genomics)
1534
+ # @param [Google::Apis::GenomicsV1::CallSet] call_set_object
1535
+ # @param [String] fields
1536
+ # Selector specifying which fields to include in a partial response.
1537
+ # @param [String] quota_user
1538
+ # Available to use for quota purposes for server-side applications. Can be any
1539
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1540
+ # @param [Google::Apis::RequestOptions] options
1541
+ # Request-specific options
1542
+ #
1543
+ # @yield [result, err] Result & error if block supplied
1544
+ # @yieldparam result [Google::Apis::GenomicsV1::CallSet] parsed result object
1545
+ # @yieldparam err [StandardError] error object if request failed
1546
+ #
1547
+ # @return [Google::Apis::GenomicsV1::CallSet]
1548
+ #
1549
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1550
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1551
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1552
+ def create_call_set(call_set_object = nil, fields: nil, quota_user: nil, options: nil, &block)
1553
+ command = make_simple_command(:post, 'v1/callsets', options)
1554
+ command.request_representation = Google::Apis::GenomicsV1::CallSet::Representation
1555
+ command.request_object = call_set_object
1556
+ command.response_representation = Google::Apis::GenomicsV1::CallSet::Representation
1557
+ command.response_class = Google::Apis::GenomicsV1::CallSet
1558
+ command.query['fields'] = fields unless fields.nil?
1559
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1560
+ execute_or_queue_command(command, &block)
1561
+ end
1562
+
1563
+ # Updates a call set. For the definitions of call sets and other genomics
1564
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
1565
+ # genomics/fundamentals-of-google-genomics) This method supports patch semantics.
1566
+ # @param [String] call_set_id
1567
+ # The ID of the call set to be updated.
1568
+ # @param [Google::Apis::GenomicsV1::CallSet] call_set_object
1569
+ # @param [String] update_mask
1570
+ # An optional mask specifying which fields to update. At this time, the only
1571
+ # mutable field is name. The only acceptable value is "name". If unspecified,
1572
+ # all mutable fields will be updated.
1573
+ # @param [String] fields
1574
+ # Selector specifying which fields to include in a partial response.
1575
+ # @param [String] quota_user
1576
+ # Available to use for quota purposes for server-side applications. Can be any
1577
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1578
+ # @param [Google::Apis::RequestOptions] options
1579
+ # Request-specific options
1580
+ #
1581
+ # @yield [result, err] Result & error if block supplied
1582
+ # @yieldparam result [Google::Apis::GenomicsV1::CallSet] parsed result object
1583
+ # @yieldparam err [StandardError] error object if request failed
1584
+ #
1585
+ # @return [Google::Apis::GenomicsV1::CallSet]
1586
+ #
1587
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1588
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1589
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1590
+ def patch_call_set(call_set_id, call_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block)
1591
+ command = make_simple_command(:patch, 'v1/callsets/{callSetId}', options)
1592
+ command.request_representation = Google::Apis::GenomicsV1::CallSet::Representation
1593
+ command.request_object = call_set_object
1594
+ command.response_representation = Google::Apis::GenomicsV1::CallSet::Representation
1595
+ command.response_class = Google::Apis::GenomicsV1::CallSet
1596
+ command.params['callSetId'] = call_set_id unless call_set_id.nil?
1597
+ command.query['updateMask'] = update_mask unless update_mask.nil?
1598
+ command.query['fields'] = fields unless fields.nil?
1599
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1600
+ execute_or_queue_command(command, &block)
1601
+ end
1602
+
1603
+ # Deletes a call set. For the definitions of call sets and other genomics
1604
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
1605
+ # genomics/fundamentals-of-google-genomics)
1606
+ # @param [String] call_set_id
1607
+ # The ID of the call set to be deleted.
1608
+ # @param [String] fields
1609
+ # Selector specifying which fields to include in a partial response.
1610
+ # @param [String] quota_user
1611
+ # Available to use for quota purposes for server-side applications. Can be any
1612
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1613
+ # @param [Google::Apis::RequestOptions] options
1614
+ # Request-specific options
1615
+ #
1616
+ # @yield [result, err] Result & error if block supplied
1617
+ # @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
1618
+ # @yieldparam err [StandardError] error object if request failed
1619
+ #
1620
+ # @return [Google::Apis::GenomicsV1::Empty]
1621
+ #
1622
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1623
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1624
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1625
+ def delete_call_set(call_set_id, fields: nil, quota_user: nil, options: nil, &block)
1626
+ command = make_simple_command(:delete, 'v1/callsets/{callSetId}', options)
1627
+ command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
1628
+ command.response_class = Google::Apis::GenomicsV1::Empty
1629
+ command.params['callSetId'] = call_set_id unless call_set_id.nil?
1630
+ command.query['fields'] = fields unless fields.nil?
1631
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1632
+ execute_or_queue_command(command, &block)
1633
+ end
1634
+
1635
+ # Gets a call set by ID. For the definitions of call sets and other genomics
1636
+ # resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
1637
+ # genomics/fundamentals-of-google-genomics)
1638
+ # @param [String] call_set_id
1639
+ # The ID of the call set.
1640
+ # @param [String] fields
1641
+ # Selector specifying which fields to include in a partial response.
1642
+ # @param [String] quota_user
1643
+ # Available to use for quota purposes for server-side applications. Can be any
1644
+ # arbitrary string assigned to a user, but should not exceed 40 characters.
1645
+ # @param [Google::Apis::RequestOptions] options
1646
+ # Request-specific options
1647
+ #
1648
+ # @yield [result, err] Result & error if block supplied
1649
+ # @yieldparam result [Google::Apis::GenomicsV1::CallSet] parsed result object
1650
+ # @yieldparam err [StandardError] error object if request failed
1651
+ #
1652
+ # @return [Google::Apis::GenomicsV1::CallSet]
1653
+ #
1654
+ # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
1655
+ # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
1656
+ # @raise [Google::Apis::AuthorizationError] Authorization is required
1657
+ def get_call_set(call_set_id, fields: nil, quota_user: nil, options: nil, &block)
1658
+ command = make_simple_command(:get, 'v1/callsets/{callSetId}', options)
1659
+ command.response_representation = Google::Apis::GenomicsV1::CallSet::Representation
1660
+ command.response_class = Google::Apis::GenomicsV1::CallSet
1661
+ command.params['callSetId'] = call_set_id unless call_set_id.nil?
1662
+ command.query['fields'] = fields unless fields.nil?
1663
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1664
+ execute_or_queue_command(command, &block)
1665
+ end
1666
+
1667
+ protected
1668
+
1669
+ def apply_command_defaults(command)
1670
+ command.query['key'] = key unless key.nil?
1671
+ command.query['quotaUser'] = quota_user unless quota_user.nil?
1672
+ end
1673
+ end
1674
+ end
1675
+ end
1676
+ end