google-api-client 0.8.3 → 0.9
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/.gitignore +20 -0
- data/.rspec +2 -0
- data/.rubocop.yml +7 -0
- data/.rubocop_todo.yml +63 -0
- data/.travis.yml +22 -0
- data/.yardopts +12 -0
- data/CHANGELOG.md +52 -2
- data/CONTRIBUTING.md +31 -0
- data/Gemfile +35 -1
- data/MIGRATING.md +171 -0
- data/README.md +181 -148
- data/Rakefile +1 -40
- data/api_names.yaml +1036 -0
- data/api_names_out.yaml +26053 -0
- data/bin/generate-api +95 -0
- data/generated/google/apis/adexchangebuyer_v1_3/classes.rb +1335 -0
- data/generated/google/apis/adexchangebuyer_v1_3/representations.rb +446 -0
- data/generated/google/apis/adexchangebuyer_v1_3/service.rb +872 -0
- data/generated/google/apis/adexchangebuyer_v1_3.rb +35 -0
- data/generated/google/apis/adexchangeseller_v2_0/classes.rb +792 -0
- data/generated/google/apis/adexchangeseller_v2_0/representations.rb +309 -0
- data/generated/google/apis/adexchangeseller_v2_0/service.rb +668 -0
- data/generated/google/apis/adexchangeseller_v2_0.rb +38 -0
- data/generated/google/apis/admin_datatransfer_v1/classes.rb +267 -0
- data/generated/google/apis/admin_datatransfer_v1/representations.rb +118 -0
- data/generated/google/apis/admin_datatransfer_v1/service.rb +262 -0
- data/generated/google/apis/admin_datatransfer_v1.rb +37 -0
- data/generated/google/apis/admin_directory_v1/classes.rb +3141 -0
- data/generated/google/apis/admin_directory_v1/representations.rb +1029 -0
- data/generated/google/apis/admin_directory_v1/service.rb +3818 -0
- data/generated/google/apis/admin_directory_v1.rb +113 -0
- data/generated/google/apis/admin_reports_v1/classes.rb +582 -0
- data/generated/google/apis/admin_reports_v1/representations.rb +231 -0
- data/generated/google/apis/admin_reports_v1/service.rb +336 -0
- data/generated/google/apis/admin_reports_v1.rb +38 -0
- data/generated/google/apis/adsense_v1_4/classes.rb +1285 -0
- data/generated/google/apis/adsense_v1_4/representations.rb +494 -0
- data/generated/google/apis/adsense_v1_4/service.rb +1714 -0
- data/generated/google/apis/adsense_v1_4.rb +38 -0
- data/generated/google/apis/adsensehost_v4_1/classes.rb +834 -0
- data/generated/google/apis/adsensehost_v4_1/representations.rb +327 -0
- data/generated/google/apis/adsensehost_v4_1/service.rb +1164 -0
- data/generated/google/apis/adsensehost_v4_1.rb +35 -0
- data/generated/google/apis/analytics_v3/classes.rb +5118 -0
- data/generated/google/apis/analytics_v3/representations.rb +1662 -0
- data/generated/google/apis/analytics_v3/service.rb +3568 -0
- data/generated/google/apis/analytics_v3.rb +49 -0
- data/generated/google/apis/androidenterprise_v1/classes.rb +1443 -0
- data/generated/google/apis/androidenterprise_v1/representations.rb +538 -0
- data/generated/google/apis/androidenterprise_v1/service.rb +2602 -0
- data/generated/google/apis/androidenterprise_v1.rb +35 -0
- data/generated/google/apis/androidpublisher_v2/classes.rb +1411 -0
- data/generated/google/apis/androidpublisher_v2/representations.rb +646 -0
- data/generated/google/apis/androidpublisher_v2/service.rb +2338 -0
- data/generated/google/apis/androidpublisher_v2.rb +34 -0
- data/generated/google/apis/appengine_v1beta4/classes.rb +1532 -0
- data/generated/google/apis/appengine_v1beta4/representations.rb +526 -0
- data/generated/google/apis/appengine_v1beta4/service.rb +476 -0
- data/generated/google/apis/appengine_v1beta4.rb +35 -0
- data/generated/google/apis/appsactivity_v1/classes.rb +392 -0
- data/generated/google/apis/appsactivity_v1/representations.rb +184 -0
- data/generated/google/apis/appsactivity_v1/service.rb +128 -0
- data/generated/google/apis/appsactivity_v1.rb +46 -0
- data/generated/google/apis/appstate_v1/classes.rb +154 -0
- data/generated/google/apis/appstate_v1/representations.rb +79 -0
- data/generated/google/apis/appstate_v1/service.rb +260 -0
- data/generated/google/apis/appstate_v1.rb +34 -0
- data/generated/google/apis/autoscaler_v1beta2/classes.rb +747 -0
- data/generated/google/apis/autoscaler_v1beta2/representations.rb +281 -0
- data/generated/google/apis/autoscaler_v1beta2/service.rb +478 -0
- data/generated/google/apis/autoscaler_v1beta2.rb +38 -0
- data/generated/google/apis/bigquery_v2/classes.rb +2471 -0
- data/generated/google/apis/bigquery_v2/representations.rb +816 -0
- data/generated/google/apis/bigquery_v2/service.rb +982 -0
- data/generated/google/apis/bigquery_v2.rb +52 -0
- data/generated/google/apis/blogger_v3/classes.rb +1354 -0
- data/generated/google/apis/blogger_v3/representations.rb +562 -0
- data/generated/google/apis/blogger_v3/service.rb +1587 -0
- data/generated/google/apis/blogger_v3.rb +37 -0
- data/generated/google/apis/books_v1/classes.rb +3956 -0
- data/generated/google/apis/books_v1/representations.rb +1538 -0
- data/generated/google/apis/books_v1/service.rb +2290 -0
- data/generated/google/apis/books_v1.rb +34 -0
- data/generated/google/apis/calendar_v3/classes.rb +1742 -0
- data/generated/google/apis/calendar_v3/representations.rb +567 -0
- data/generated/google/apis/calendar_v3/service.rb +1968 -0
- data/generated/google/apis/calendar_v3.rb +37 -0
- data/generated/google/apis/civicinfo_v2/classes.rb +1127 -0
- data/generated/google/apis/civicinfo_v2/representations.rb +383 -0
- data/generated/google/apis/civicinfo_v2/service.rb +279 -0
- data/{lib/google/api_client/service_account.rb → generated/google/apis/civicinfo_v2.rb} +18 -8
- data/generated/google/apis/classroom_v1/classes.rb +512 -0
- data/generated/google/apis/classroom_v1/representations.rb +217 -0
- data/generated/google/apis/classroom_v1/service.rb +970 -0
- data/generated/google/apis/classroom_v1.rb +49 -0
- data/generated/google/apis/classroom_v1beta1/classes.rb +447 -0
- data/generated/google/apis/classroom_v1beta1/representations.rb +190 -0
- data/generated/google/apis/classroom_v1beta1/service.rb +791 -0
- data/generated/google/apis/classroom_v1beta1.rb +49 -0
- data/generated/google/apis/cloudbilling_v1/classes.rb +169 -0
- data/generated/google/apis/cloudbilling_v1/representations.rb +79 -0
- data/generated/google/apis/cloudbilling_v1/service.rb +258 -0
- data/generated/google/apis/cloudbilling_v1.rb +35 -0
- data/generated/google/apis/clouddebugger_v2/classes.rb +1004 -0
- data/generated/google/apis/clouddebugger_v2/representations.rb +410 -0
- data/generated/google/apis/clouddebugger_v2/service.rb +370 -0
- data/generated/google/apis/clouddebugger_v2.rb +41 -0
- data/generated/google/apis/cloudmonitoring_v2beta2/classes.rb +679 -0
- data/generated/google/apis/cloudmonitoring_v2beta2/representations.rb +311 -0
- data/generated/google/apis/cloudmonitoring_v2beta2/service.rb +452 -0
- data/generated/google/apis/cloudmonitoring_v2beta2.rb +37 -0
- data/generated/google/apis/cloudresourcemanager_v1beta1/classes.rb +437 -0
- data/generated/google/apis/cloudresourcemanager_v1beta1/representations.rb +188 -0
- data/generated/google/apis/cloudresourcemanager_v1beta1/service.rb +623 -0
- data/generated/google/apis/cloudresourcemanager_v1beta1.rb +38 -0
- data/generated/google/apis/cloudtrace_v1/classes.rb +188 -0
- data/generated/google/apis/cloudtrace_v1/representations.rb +92 -0
- data/generated/google/apis/cloudtrace_v1/service.rb +190 -0
- data/generated/google/apis/cloudtrace_v1.rb +35 -0
- data/generated/google/apis/clouduseraccounts_beta/classes.rb +823 -0
- data/generated/google/apis/clouduseraccounts_beta/representations.rb +313 -0
- data/generated/google/apis/clouduseraccounts_beta/service.rb +854 -0
- data/generated/google/apis/clouduseraccounts_beta.rb +43 -0
- data/generated/google/apis/compute_beta/classes.rb +9128 -0
- data/generated/google/apis/compute_beta/representations.rb +3048 -0
- data/generated/google/apis/compute_beta/service.rb +10154 -0
- data/generated/google/apis/compute_beta.rb +49 -0
- data/generated/google/apis/compute_v1/classes.rb +8681 -0
- data/generated/google/apis/compute_v1/representations.rb +2895 -0
- data/generated/google/apis/compute_v1/service.rb +9252 -0
- data/generated/google/apis/compute_v1.rb +49 -0
- data/generated/google/apis/container_v1/classes.rb +463 -0
- data/generated/google/apis/container_v1/representations.rb +175 -0
- data/generated/google/apis/container_v1/service.rb +367 -0
- data/generated/google/apis/container_v1.rb +35 -0
- data/generated/google/apis/container_v1beta1/classes.rb +466 -0
- data/generated/google/apis/container_v1beta1/representations.rb +177 -0
- data/generated/google/apis/container_v1beta1/service.rb +394 -0
- data/generated/google/apis/container_v1beta1.rb +35 -0
- data/generated/google/apis/content_v2/classes.rb +5986 -0
- data/generated/google/apis/content_v2/representations.rb +2288 -0
- data/generated/google/apis/content_v2/service.rb +2338 -0
- data/generated/google/apis/content_v2.rb +35 -0
- data/generated/google/apis/coordinate_v1/classes.rb +669 -0
- data/generated/google/apis/coordinate_v1/representations.rb +285 -0
- data/generated/google/apis/coordinate_v1/service.rb +678 -0
- data/generated/google/apis/coordinate_v1.rb +37 -0
- data/generated/google/apis/customsearch_v1/classes.rb +771 -0
- data/generated/google/apis/customsearch_v1/representations.rb +276 -0
- data/generated/google/apis/customsearch_v1/service.rb +207 -0
- data/{lib/google/api_client/auth/compute_service_account.rb → generated/google/apis/customsearch_v1.rb} +13 -10
- data/generated/google/apis/datastore_v1beta2/classes.rb +1186 -0
- data/generated/google/apis/datastore_v1beta2/representations.rb +526 -0
- data/generated/google/apis/datastore_v1beta2/service.rb +294 -0
- data/generated/google/apis/datastore_v1beta2.rb +40 -0
- data/generated/google/apis/deploymentmanager_v2/classes.rb +1091 -0
- data/generated/google/apis/deploymentmanager_v2/representations.rb +422 -0
- data/generated/google/apis/deploymentmanager_v2/service.rb +857 -0
- data/generated/google/apis/deploymentmanager_v2.rb +44 -0
- data/generated/google/apis/deploymentmanager_v2beta2/classes.rb +843 -0
- data/generated/google/apis/deploymentmanager_v2beta2/representations.rb +306 -0
- data/generated/google/apis/deploymentmanager_v2beta2/service.rb +689 -0
- data/generated/google/apis/deploymentmanager_v2beta2.rb +44 -0
- data/generated/google/apis/dfareporting_v2_1/classes.rb +10770 -0
- data/generated/google/apis/dfareporting_v2_1/representations.rb +3438 -0
- data/generated/google/apis/dfareporting_v2_1/service.rb +8585 -0
- data/generated/google/apis/dfareporting_v2_1.rb +37 -0
- data/generated/google/apis/discovery_v1/classes.rb +961 -0
- data/generated/google/apis/discovery_v1/representations.rb +357 -0
- data/generated/google/apis/discovery_v1/service.rb +142 -0
- data/generated/google/apis/discovery_v1.rb +32 -0
- data/generated/google/apis/dns_v1/classes.rb +406 -0
- data/generated/google/apis/dns_v1/representations.rb +151 -0
- data/generated/google/apis/dns_v1/service.rb +454 -0
- data/generated/google/apis/dns_v1.rb +44 -0
- data/generated/google/apis/doubleclickbidmanager_v1/classes.rb +716 -0
- data/generated/google/apis/doubleclickbidmanager_v1/representations.rb +298 -0
- data/generated/google/apis/doubleclickbidmanager_v1/service.rb +341 -0
- data/generated/google/apis/doubleclickbidmanager_v1.rb +31 -0
- data/generated/google/apis/doubleclicksearch_v2/classes.rb +956 -0
- data/generated/google/apis/doubleclicksearch_v2/representations.rb +316 -0
- data/generated/google/apis/doubleclicksearch_v2/service.rb +480 -0
- data/generated/google/apis/doubleclicksearch_v2.rb +35 -0
- data/generated/google/apis/drive_v2/classes.rb +2562 -0
- data/generated/google/apis/drive_v2/representations.rb +795 -0
- data/generated/google/apis/drive_v2/service.rb +2696 -0
- data/generated/google/apis/drive_v2.rb +58 -0
- data/generated/google/apis/drive_v3/classes.rb +1534 -0
- data/generated/google/apis/drive_v3/representations.rb +497 -0
- data/generated/google/apis/drive_v3/service.rb +1541 -0
- data/generated/google/apis/drive_v3.rb +55 -0
- data/generated/google/apis/fitness_v1/classes.rb +885 -0
- data/generated/google/apis/fitness_v1/representations.rb +320 -0
- data/generated/google/apis/fitness_v1/service.rb +675 -0
- data/generated/google/apis/fitness_v1.rb +49 -0
- data/generated/google/apis/fusiontables_v2/classes.rb +1048 -0
- data/generated/google/apis/fusiontables_v2/representations.rb +409 -0
- data/generated/google/apis/fusiontables_v2/service.rb +1463 -0
- data/generated/google/apis/fusiontables_v2.rb +37 -0
- data/generated/google/apis/games_configuration_v1configuration/classes.rb +506 -0
- data/generated/google/apis/games_configuration_v1configuration/representations.rb +206 -0
- data/generated/google/apis/games_configuration_v1configuration/service.rb +565 -0
- data/generated/google/apis/games_configuration_v1configuration.rb +34 -0
- data/generated/google/apis/games_management_v1management/classes.rb +524 -0
- data/generated/google/apis/games_management_v1management/representations.rb +231 -0
- data/generated/google/apis/games_management_v1management/service.rb +994 -0
- data/generated/google/apis/games_management_v1management.rb +37 -0
- data/generated/google/apis/games_v1/classes.rb +4617 -0
- data/generated/google/apis/games_v1/representations.rb +1584 -0
- data/generated/google/apis/games_v1/service.rb +2290 -0
- data/generated/google/apis/games_v1.rb +40 -0
- data/generated/google/apis/gan_v1beta1/classes.rb +1428 -0
- data/generated/google/apis/gan_v1beta1/representations.rb +428 -0
- data/generated/google/apis/gan_v1beta1/service.rb +682 -0
- data/generated/google/apis/gan_v1beta1.rb +31 -0
- data/generated/google/apis/genomics_v1/classes.rb +2609 -0
- data/generated/google/apis/genomics_v1/representations.rb +909 -0
- data/generated/google/apis/genomics_v1/service.rb +1676 -0
- data/generated/google/apis/genomics_v1.rb +49 -0
- data/generated/google/apis/genomics_v1beta2/classes.rb +3288 -0
- data/generated/google/apis/genomics_v1beta2/representations.rb +1194 -0
- data/generated/google/apis/genomics_v1beta2/service.rb +2392 -0
- data/generated/google/apis/genomics_v1beta2.rb +46 -0
- data/generated/google/apis/gmail_v1/classes.rb +794 -0
- data/generated/google/apis/gmail_v1/representations.rb +339 -0
- data/generated/google/apis/gmail_v1/service.rb +1470 -0
- data/generated/google/apis/gmail_v1.rb +52 -0
- data/generated/google/apis/groupsmigration_v1/classes.rb +51 -0
- data/generated/google/apis/groupsmigration_v1/representations.rb +38 -0
- data/generated/google/apis/groupsmigration_v1/service.rb +110 -0
- data/generated/google/apis/groupsmigration_v1.rb +34 -0
- data/generated/google/apis/groupssettings_v1/classes.rb +221 -0
- data/generated/google/apis/groupssettings_v1/representations.rb +64 -0
- data/generated/google/apis/groupssettings_v1/service.rb +179 -0
- data/generated/google/apis/groupssettings_v1.rb +34 -0
- data/generated/google/apis/identitytoolkit_v3/classes.rb +1466 -0
- data/generated/google/apis/identitytoolkit_v3/representations.rb +509 -0
- data/generated/google/apis/identitytoolkit_v3/service.rb +581 -0
- data/generated/google/apis/identitytoolkit_v3.rb +31 -0
- data/generated/google/apis/kgsearch_v1/classes.rb +59 -0
- data/generated/google/apis/kgsearch_v1/representations.rb +39 -0
- data/generated/google/apis/kgsearch_v1/service.rb +111 -0
- data/{spec/google/api_client/request_spec.rb → generated/google/apis/kgsearch_v1.rb} +16 -13
- data/generated/google/apis/licensing_v1/classes.rb +132 -0
- data/generated/google/apis/licensing_v1/representations.rb +68 -0
- data/generated/google/apis/licensing_v1/service.rb +369 -0
- data/generated/google/apis/licensing_v1.rb +34 -0
- data/generated/google/apis/logging_v1beta3/classes.rb +1079 -0
- data/generated/google/apis/logging_v1beta3/representations.rb +366 -0
- data/generated/google/apis/logging_v1beta3/service.rb +1001 -0
- data/generated/google/apis/logging_v1beta3.rb +47 -0
- data/generated/google/apis/manager_v1beta2/classes.rb +1287 -0
- data/generated/google/apis/manager_v1beta2/representations.rb +536 -0
- data/generated/google/apis/manager_v1beta2/service.rb +372 -0
- data/generated/google/apis/manager_v1beta2.rb +53 -0
- data/generated/google/apis/mapsengine_v1/classes.rb +2873 -0
- data/generated/google/apis/mapsengine_v1/representations.rb +1235 -0
- data/generated/google/apis/mapsengine_v1/service.rb +3388 -0
- data/generated/google/apis/mapsengine_v1.rb +38 -0
- data/generated/google/apis/mirror_v1/classes.rb +1072 -0
- data/generated/google/apis/mirror_v1/representations.rb +350 -0
- data/generated/google/apis/mirror_v1/service.rb +977 -0
- data/generated/google/apis/mirror_v1.rb +37 -0
- data/generated/google/apis/oauth2_v2/classes.rb +245 -0
- data/generated/google/apis/oauth2_v2/representations.rb +94 -0
- data/generated/google/apis/oauth2_v2/service.rb +199 -0
- data/generated/google/apis/oauth2_v2.rb +43 -0
- data/generated/google/apis/pagespeedonline_v2/classes.rb +614 -0
- data/generated/google/apis/pagespeedonline_v2/representations.rb +244 -0
- data/generated/google/apis/pagespeedonline_v2/service.rb +119 -0
- data/generated/google/apis/pagespeedonline_v2.rb +32 -0
- data/generated/google/apis/partners_v2/classes.rb +942 -0
- data/generated/google/apis/partners_v2/representations.rb +402 -0
- data/generated/google/apis/partners_v2/service.rb +400 -0
- data/generated/google/apis/partners_v2.rb +32 -0
- data/generated/google/apis/plus_domains_v1/classes.rb +2609 -0
- data/generated/google/apis/plus_domains_v1/representations.rb +987 -0
- data/generated/google/apis/plus_domains_v1/service.rb +904 -0
- data/generated/google/apis/plus_domains_v1.rb +61 -0
- data/generated/google/apis/plus_v1/classes.rb +2094 -0
- data/generated/google/apis/plus_v1/representations.rb +805 -0
- data/generated/google/apis/plus_v1/service.rb +470 -0
- data/generated/google/apis/plus_v1.rb +43 -0
- data/generated/google/apis/prediction_v1_6/classes.rb +751 -0
- data/generated/google/apis/prediction_v1_6/representations.rb +327 -0
- data/generated/google/apis/prediction_v1_6/service.rb +380 -0
- data/generated/google/apis/prediction_v1_6.rb +44 -0
- data/generated/google/apis/proximitybeacon_v1beta1/classes.rb +639 -0
- data/generated/google/apis/proximitybeacon_v1beta1/representations.rb +274 -0
- data/generated/google/apis/proximitybeacon_v1beta1/service.rb +591 -0
- data/generated/google/apis/proximitybeacon_v1beta1.rb +31 -0
- data/generated/google/apis/pubsub_v1/classes.rb +614 -0
- data/generated/google/apis/pubsub_v1/representations.rb +281 -0
- data/generated/google/apis/pubsub_v1/service.rb +774 -0
- data/generated/google/apis/pubsub_v1.rb +37 -0
- data/generated/google/apis/pubsub_v1beta2/classes.rb +620 -0
- data/generated/google/apis/pubsub_v1beta2/representations.rb +282 -0
- data/generated/google/apis/pubsub_v1beta2/service.rb +774 -0
- data/generated/google/apis/pubsub_v1beta2.rb +37 -0
- data/generated/google/apis/qpx_express_v1/classes.rb +1268 -0
- data/generated/google/apis/qpx_express_v1/representations.rb +424 -0
- data/generated/google/apis/qpx_express_v1/service.rb +100 -0
- data/generated/google/apis/qpx_express_v1.rb +31 -0
- data/generated/google/apis/replicapool_v1beta2/classes.rb +631 -0
- data/generated/google/apis/replicapool_v1beta2/representations.rb +236 -0
- data/generated/google/apis/replicapool_v1beta2/service.rb +608 -0
- data/generated/google/apis/replicapool_v1beta2.rb +44 -0
- data/generated/google/apis/replicapoolupdater_v1beta1/classes.rb +733 -0
- data/generated/google/apis/replicapoolupdater_v1beta1/representations.rb +264 -0
- data/generated/google/apis/replicapoolupdater_v1beta1/service.rb +508 -0
- data/generated/google/apis/replicapoolupdater_v1beta1.rb +44 -0
- data/generated/google/apis/reseller_v1/classes.rb +520 -0
- data/generated/google/apis/reseller_v1/representations.rb +200 -0
- data/generated/google/apis/reseller_v1/service.rb +623 -0
- data/generated/google/apis/reseller_v1.rb +37 -0
- data/generated/google/apis/resourceviews_v1beta2/classes.rb +660 -0
- data/generated/google/apis/resourceviews_v1beta2/representations.rb +269 -0
- data/generated/google/apis/resourceviews_v1beta2/service.rb +563 -0
- data/generated/google/apis/resourceviews_v1beta2.rb +50 -0
- data/generated/google/apis/script_v1/classes.rb +259 -0
- data/generated/google/apis/script_v1/representations.rb +106 -0
- data/generated/google/apis/script_v1/service.rb +98 -0
- data/generated/google/apis/script_v1.rb +61 -0
- data/generated/google/apis/site_verification_v1/classes.rb +185 -0
- data/generated/google/apis/site_verification_v1/representations.rb +101 -0
- data/generated/google/apis/site_verification_v1/service.rb +315 -0
- data/generated/google/apis/site_verification_v1.rb +37 -0
- data/generated/google/apis/sqladmin_v1beta4/classes.rb +2001 -0
- data/generated/google/apis/sqladmin_v1beta4/representations.rb +758 -0
- data/generated/google/apis/sqladmin_v1beta4/service.rb +1625 -0
- data/generated/google/apis/sqladmin_v1beta4.rb +37 -0
- data/generated/google/apis/storage_v1/classes.rb +1222 -0
- data/generated/google/apis/storage_v1/representations.rb +445 -0
- data/generated/google/apis/storage_v1/service.rb +1903 -0
- data/generated/google/apis/storage_v1.rb +46 -0
- data/generated/google/apis/storagetransfer_v1/classes.rb +1046 -0
- data/generated/google/apis/storagetransfer_v1/representations.rb +370 -0
- data/generated/google/apis/storagetransfer_v1/service.rb +473 -0
- data/generated/google/apis/storagetransfer_v1.rb +35 -0
- data/generated/google/apis/tagmanager_v1/classes.rb +1384 -0
- data/generated/google/apis/tagmanager_v1/representations.rb +515 -0
- data/generated/google/apis/tagmanager_v1/service.rb +1817 -0
- data/generated/google/apis/tagmanager_v1.rb +52 -0
- data/generated/google/apis/taskqueue_v1beta2/classes.rb +254 -0
- data/generated/google/apis/taskqueue_v1beta2/representations.rb +114 -0
- data/generated/google/apis/taskqueue_v1beta2/service.rb +408 -0
- data/generated/google/apis/taskqueue_v1beta2.rb +37 -0
- data/generated/google/apis/tasks_v1/classes.rb +296 -0
- data/generated/google/apis/tasks_v1/representations.rb +115 -0
- data/generated/google/apis/tasks_v1/service.rb +643 -0
- data/generated/google/apis/tasks_v1.rb +37 -0
- data/generated/google/apis/translate_v2/classes.rb +168 -0
- data/generated/google/apis/translate_v2/representations.rb +109 -0
- data/generated/google/apis/translate_v2/service.rb +182 -0
- data/generated/google/apis/translate_v2.rb +31 -0
- data/generated/google/apis/urlshortener_v1/classes.rb +246 -0
- data/generated/google/apis/urlshortener_v1/representations.rb +111 -0
- data/generated/google/apis/urlshortener_v1/service.rb +176 -0
- data/generated/google/apis/urlshortener_v1.rb +34 -0
- data/generated/google/apis/webmasters_v3/classes.rb +563 -0
- data/generated/google/apis/webmasters_v3/representations.rb +250 -0
- data/generated/google/apis/webmasters_v3/service.rb +573 -0
- data/generated/google/apis/webmasters_v3.rb +37 -0
- data/generated/google/apis/youtube_analytics_v1/classes.rb +546 -0
- data/generated/google/apis/youtube_analytics_v1/representations.rb +243 -0
- data/generated/google/apis/youtube_analytics_v1/service.rb +562 -0
- data/generated/google/apis/youtube_analytics_v1.rb +46 -0
- data/generated/google/apis/youtube_v3/classes.rb +8136 -0
- data/generated/google/apis/youtube_v3/representations.rb +2838 -0
- data/generated/google/apis/youtube_v3/service.rb +4403 -0
- data/generated/google/apis/youtube_v3.rb +49 -0
- data/generated/google/apis/youtubereporting_v1/classes.rb +258 -0
- data/generated/google/apis/youtubereporting_v1/representations.rb +128 -0
- data/generated/google/apis/youtubereporting_v1/service.rb +364 -0
- data/generated/google/apis/youtubereporting_v1.rb +38 -0
- data/google-api-client.gemspec +27 -39
- data/lib/google/api_client/auth/installed_app.rb +7 -5
- data/lib/google/api_client/auth/key_utils.rb +12 -11
- data/lib/google/api_client/auth/storage.rb +5 -2
- data/lib/google/api_client/auth/storages/file_store.rb +2 -3
- data/lib/google/api_client/auth/storages/redis_store.rb +7 -2
- data/lib/google/api_client/client_secrets.rb +4 -5
- data/lib/google/apis/core/api_command.rb +135 -0
- data/lib/google/apis/core/base_service.rb +317 -0
- data/lib/google/apis/core/batch.rb +239 -0
- data/lib/google/apis/core/download.rb +94 -0
- data/lib/google/apis/core/hashable.rb +44 -0
- data/lib/google/apis/core/http_client_adapter.rb +82 -0
- data/lib/google/apis/core/http_command.rb +312 -0
- data/lib/google/apis/core/json_representation.rb +127 -0
- data/lib/google/{api_client/version.rb → apis/core/logging.rb} +12 -8
- data/lib/google/apis/core/multipart.rb +187 -0
- data/lib/google/apis/core/upload.rb +288 -0
- data/lib/google/{api_client → apis}/errors.rb +39 -28
- data/lib/google/apis/generator/annotator.rb +295 -0
- data/lib/google/apis/generator/helpers.rb +74 -0
- data/lib/google/apis/generator/model.rb +143 -0
- data/lib/google/apis/generator/template.rb +124 -0
- data/lib/google/apis/generator/templates/_class.tmpl +40 -0
- data/lib/google/apis/generator/templates/_method.tmpl +92 -0
- data/lib/google/apis/generator/templates/_representation.tmpl +51 -0
- data/lib/google/apis/generator/templates/_representation_stub.tmpl +15 -0
- data/lib/google/apis/generator/templates/_representation_type.tmpl +10 -0
- data/lib/google/{api_client/reference.rb → apis/generator/templates/classes.rb.tmpl} +11 -9
- data/lib/google/apis/generator/templates/module.rb.tmpl +40 -0
- data/lib/google/apis/generator/templates/representations.rb.tmpl +32 -0
- data/lib/google/apis/generator/templates/service.rb.tmpl +60 -0
- data/lib/google/apis/generator.rb +70 -0
- data/lib/google/apis/options.rb +85 -0
- data/lib/google/apis/version.rb +39 -0
- data/lib/google/apis.rb +48 -0
- data/rakelib/metrics.rake +22 -0
- data/rakelib/rubocop.rake +10 -0
- data/rakelib/spec.rake +11 -0
- data/rakelib/yard.rake +11 -0
- data/samples/Gemfile +7 -0
- data/samples/README.md +51 -0
- data/samples/google-api-samples +32 -0
- data/samples/lib/base_cli.rb +94 -0
- data/samples/lib/samples/analytics.rb +62 -0
- data/samples/lib/samples/calendar.rb +83 -0
- data/samples/lib/samples/drive.rb +82 -0
- data/samples/lib/samples/gmail.rb +50 -0
- data/samples/lib/samples/pubsub.rb +114 -0
- data/samples/lib/samples/translate.rb +44 -0
- data/samples/lib/samples/you_tube.rb +44 -0
- data/script/generate +95 -0
- data/script/package +8 -0
- data/script/release +15 -0
- data/spec/fixtures/files/api_names.yaml +3 -0
- data/spec/fixtures/files/auth_stored_credentials.json +8 -0
- data/spec/fixtures/files/child/.gitignore +0 -0
- data/spec/fixtures/files/client_secrets.json +1 -0
- data/spec/fixtures/files/invalid.json +1 -0
- data/spec/fixtures/files/test.blah +1 -0
- data/spec/fixtures/files/test.txt +1 -0
- data/spec/fixtures/files/test_api.json +440 -0
- data/spec/google/api_client/auth/storage_spec.rb +1 -3
- data/spec/google/api_client/auth/storages/file_store_spec.rb +1 -2
- data/spec/google/api_client/auth/storages/redis_store_spec.rb +1 -3
- data/spec/google/api_client/client_secrets_spec.rb +38 -1
- data/spec/google/apis/core/api_command_spec.rb +209 -0
- data/spec/google/apis/core/batch_spec.rb +142 -0
- data/spec/google/apis/core/download_spec.rb +103 -0
- data/spec/google/apis/core/hashable_spec.rb +60 -0
- data/spec/google/apis/core/http_command_spec.rb +284 -0
- data/spec/google/apis/core/json_representation_spec.rb +192 -0
- data/spec/google/apis/core/service_spec.rb +247 -0
- data/spec/google/apis/core/upload_spec.rb +300 -0
- data/{lib/google/api_client/discovery.rb → spec/google/apis/generated_spec.rb} +13 -5
- data/spec/google/apis/generator/generator_spec.rb +272 -0
- data/spec/google/apis/logging_spec.rb +45 -0
- data/spec/google/apis/options_spec.rb +40 -0
- data/spec/integration_tests/adsense_spec.rb +29 -0
- data/spec/integration_tests/drive_spec.rb +35 -0
- data/spec/integration_tests/pubsub_spec.rb +48 -0
- data/spec/integration_tests/url_shortener_spec.rb +45 -0
- data/spec/spec_helper/load_path_spec.rb +33 -0
- data/spec/spec_helper.rb +131 -44
- data/third_party/hurley_patches.rb +103 -0
- metadata +533 -170
- data/lib/compat/multi_json.rb +0 -19
- data/lib/google/api_client/auth/file_storage.rb +0 -59
- data/lib/google/api_client/auth/jwt_asserter.rb +0 -126
- data/lib/google/api_client/auth/pkcs12.rb +0 -41
- data/lib/google/api_client/batch.rb +0 -325
- data/lib/google/api_client/charset.rb +0 -33
- data/lib/google/api_client/discovery/api.rb +0 -300
- data/lib/google/api_client/discovery/media.rb +0 -77
- data/lib/google/api_client/discovery/method.rb +0 -363
- data/lib/google/api_client/discovery/resource.rb +0 -156
- data/lib/google/api_client/discovery/schema.rb +0 -119
- data/lib/google/api_client/environment.rb +0 -42
- data/lib/google/api_client/gzip.rb +0 -28
- data/lib/google/api_client/logging.rb +0 -32
- data/lib/google/api_client/media.rb +0 -259
- data/lib/google/api_client/railtie.rb +0 -18
- data/lib/google/api_client/request.rb +0 -350
- data/lib/google/api_client/result.rb +0 -255
- data/lib/google/api_client/service/batch.rb +0 -110
- data/lib/google/api_client/service/request.rb +0 -144
- data/lib/google/api_client/service/resource.rb +0 -40
- data/lib/google/api_client/service/result.rb +0 -162
- data/lib/google/api_client/service/simple_file_store.rb +0 -151
- data/lib/google/api_client/service/stub_generator.rb +0 -61
- data/lib/google/api_client/service.rb +0 -233
- data/lib/google/api_client.rb +0 -750
- data/spec/google/api_client/batch_spec.rb +0 -248
- data/spec/google/api_client/discovery_spec.rb +0 -662
- data/spec/google/api_client/gzip_spec.rb +0 -98
- data/spec/google/api_client/media_spec.rb +0 -178
- data/spec/google/api_client/result_spec.rb +0 -207
- data/spec/google/api_client/service_account_spec.rb +0 -169
- data/spec/google/api_client/service_spec.rb +0 -618
- data/spec/google/api_client/simple_file_store_spec.rb +0 -133
- data/spec/google/api_client_spec.rb +0 -352
@@ -0,0 +1,1676 @@
|
|
1
|
+
# Copyright 2015 Google Inc.
|
2
|
+
#
|
3
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
4
|
+
# you may not use this file except in compliance with the License.
|
5
|
+
# You may obtain a copy of the License at
|
6
|
+
#
|
7
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
8
|
+
#
|
9
|
+
# Unless required by applicable law or agreed to in writing, software
|
10
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
11
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
12
|
+
# See the License for the specific language governing permissions and
|
13
|
+
# limitations under the License.
|
14
|
+
|
15
|
+
require 'google/apis/core/base_service'
|
16
|
+
require 'google/apis/core/json_representation'
|
17
|
+
require 'google/apis/core/hashable'
|
18
|
+
require 'google/apis/errors'
|
19
|
+
|
20
|
+
module Google
|
21
|
+
module Apis
|
22
|
+
module GenomicsV1
|
23
|
+
# Genomics API
|
24
|
+
#
|
25
|
+
# An API to store, process, explore, and share genomic data. It supports
|
26
|
+
# reference-based alignements, genetic variants, and reference genomes. This API
|
27
|
+
# provides an implementation of the Global Alliance for Genomics and Health (
|
28
|
+
# GA4GH) v0.5.1 API as well as several extensions.
|
29
|
+
#
|
30
|
+
# @example
|
31
|
+
# require 'google/apis/genomics_v1'
|
32
|
+
#
|
33
|
+
# Genomics = Google::Apis::GenomicsV1 # Alias the module
|
34
|
+
# service = Genomics::GenomicsService.new
|
35
|
+
#
|
36
|
+
# @see
|
37
|
+
class GenomicsService < Google::Apis::Core::BaseService
|
38
|
+
# @return [String]
|
39
|
+
# API key. Your API key identifies your project and provides you with API access,
|
40
|
+
# quota, and reports. Required unless you provide an OAuth 2.0 token.
|
41
|
+
attr_accessor :key
|
42
|
+
|
43
|
+
# @return [String]
|
44
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
45
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
46
|
+
attr_accessor :quota_user
|
47
|
+
|
48
|
+
def initialize
|
49
|
+
super('https://genomics.googleapis.com/', '')
|
50
|
+
end
|
51
|
+
|
52
|
+
# Lists datasets within a project. For the definitions of datasets and other
|
53
|
+
# genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
|
54
|
+
# com/genomics/fundamentals-of-google-genomics)
|
55
|
+
# @param [String] project_id
|
56
|
+
# Required. The project to list datasets for.
|
57
|
+
# @param [Fixnum] page_size
|
58
|
+
# The maximum number of results to return in a single page. If unspecified,
|
59
|
+
# defaults to 50. The maximum value is 1024.
|
60
|
+
# @param [String] page_token
|
61
|
+
# The continuation token, which is used to page through large result sets. To
|
62
|
+
# get the next page of results, set this parameter to the value of `
|
63
|
+
# nextPageToken` from the previous response.
|
64
|
+
# @param [String] fields
|
65
|
+
# Selector specifying which fields to include in a partial response.
|
66
|
+
# @param [String] quota_user
|
67
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
68
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
69
|
+
# @param [Google::Apis::RequestOptions] options
|
70
|
+
# Request-specific options
|
71
|
+
#
|
72
|
+
# @yield [result, err] Result & error if block supplied
|
73
|
+
# @yieldparam result [Google::Apis::GenomicsV1::ListDatasetsResponse] parsed result object
|
74
|
+
# @yieldparam err [StandardError] error object if request failed
|
75
|
+
#
|
76
|
+
# @return [Google::Apis::GenomicsV1::ListDatasetsResponse]
|
77
|
+
#
|
78
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
79
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
80
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
81
|
+
def list_datasets(project_id: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil, &block)
|
82
|
+
command = make_simple_command(:get, 'v1/datasets', options)
|
83
|
+
command.response_representation = Google::Apis::GenomicsV1::ListDatasetsResponse::Representation
|
84
|
+
command.response_class = Google::Apis::GenomicsV1::ListDatasetsResponse
|
85
|
+
command.query['projectId'] = project_id unless project_id.nil?
|
86
|
+
command.query['pageSize'] = page_size unless page_size.nil?
|
87
|
+
command.query['pageToken'] = page_token unless page_token.nil?
|
88
|
+
command.query['fields'] = fields unless fields.nil?
|
89
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
90
|
+
execute_or_queue_command(command, &block)
|
91
|
+
end
|
92
|
+
|
93
|
+
# Creates a new dataset. For the definitions of datasets and other genomics
|
94
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
95
|
+
# genomics/fundamentals-of-google-genomics)
|
96
|
+
# @param [Google::Apis::GenomicsV1::Dataset] dataset_object
|
97
|
+
# @param [String] fields
|
98
|
+
# Selector specifying which fields to include in a partial response.
|
99
|
+
# @param [String] quota_user
|
100
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
101
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
102
|
+
# @param [Google::Apis::RequestOptions] options
|
103
|
+
# Request-specific options
|
104
|
+
#
|
105
|
+
# @yield [result, err] Result & error if block supplied
|
106
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Dataset] parsed result object
|
107
|
+
# @yieldparam err [StandardError] error object if request failed
|
108
|
+
#
|
109
|
+
# @return [Google::Apis::GenomicsV1::Dataset]
|
110
|
+
#
|
111
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
112
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
113
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
114
|
+
def create_dataset(dataset_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
115
|
+
command = make_simple_command(:post, 'v1/datasets', options)
|
116
|
+
command.request_representation = Google::Apis::GenomicsV1::Dataset::Representation
|
117
|
+
command.request_object = dataset_object
|
118
|
+
command.response_representation = Google::Apis::GenomicsV1::Dataset::Representation
|
119
|
+
command.response_class = Google::Apis::GenomicsV1::Dataset
|
120
|
+
command.query['fields'] = fields unless fields.nil?
|
121
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
122
|
+
execute_or_queue_command(command, &block)
|
123
|
+
end
|
124
|
+
|
125
|
+
# Gets a dataset by ID. For the definitions of datasets and other genomics
|
126
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
127
|
+
# genomics/fundamentals-of-google-genomics)
|
128
|
+
# @param [String] dataset_id
|
129
|
+
# The ID of the dataset.
|
130
|
+
# @param [String] fields
|
131
|
+
# Selector specifying which fields to include in a partial response.
|
132
|
+
# @param [String] quota_user
|
133
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
134
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
135
|
+
# @param [Google::Apis::RequestOptions] options
|
136
|
+
# Request-specific options
|
137
|
+
#
|
138
|
+
# @yield [result, err] Result & error if block supplied
|
139
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Dataset] parsed result object
|
140
|
+
# @yieldparam err [StandardError] error object if request failed
|
141
|
+
#
|
142
|
+
# @return [Google::Apis::GenomicsV1::Dataset]
|
143
|
+
#
|
144
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
145
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
146
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
147
|
+
def get_dataset(dataset_id, fields: nil, quota_user: nil, options: nil, &block)
|
148
|
+
command = make_simple_command(:get, 'v1/datasets/{datasetId}', options)
|
149
|
+
command.response_representation = Google::Apis::GenomicsV1::Dataset::Representation
|
150
|
+
command.response_class = Google::Apis::GenomicsV1::Dataset
|
151
|
+
command.params['datasetId'] = dataset_id unless dataset_id.nil?
|
152
|
+
command.query['fields'] = fields unless fields.nil?
|
153
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
154
|
+
execute_or_queue_command(command, &block)
|
155
|
+
end
|
156
|
+
|
157
|
+
# Updates a dataset. For the definitions of datasets and other genomics
|
158
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
159
|
+
# genomics/fundamentals-of-google-genomics) This method supports patch semantics.
|
160
|
+
# @param [String] dataset_id
|
161
|
+
# The ID of the dataset to be updated.
|
162
|
+
# @param [Google::Apis::GenomicsV1::Dataset] dataset_object
|
163
|
+
# @param [String] update_mask
|
164
|
+
# An optional mask specifying which fields to update. At this time, the only
|
165
|
+
# mutable field is name. The only acceptable value is "name". If unspecified,
|
166
|
+
# all mutable fields will be updated.
|
167
|
+
# @param [String] fields
|
168
|
+
# Selector specifying which fields to include in a partial response.
|
169
|
+
# @param [String] quota_user
|
170
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
171
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
172
|
+
# @param [Google::Apis::RequestOptions] options
|
173
|
+
# Request-specific options
|
174
|
+
#
|
175
|
+
# @yield [result, err] Result & error if block supplied
|
176
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Dataset] parsed result object
|
177
|
+
# @yieldparam err [StandardError] error object if request failed
|
178
|
+
#
|
179
|
+
# @return [Google::Apis::GenomicsV1::Dataset]
|
180
|
+
#
|
181
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
182
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
183
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
184
|
+
def patch_dataset(dataset_id, dataset_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block)
|
185
|
+
command = make_simple_command(:patch, 'v1/datasets/{datasetId}', options)
|
186
|
+
command.request_representation = Google::Apis::GenomicsV1::Dataset::Representation
|
187
|
+
command.request_object = dataset_object
|
188
|
+
command.response_representation = Google::Apis::GenomicsV1::Dataset::Representation
|
189
|
+
command.response_class = Google::Apis::GenomicsV1::Dataset
|
190
|
+
command.params['datasetId'] = dataset_id unless dataset_id.nil?
|
191
|
+
command.query['updateMask'] = update_mask unless update_mask.nil?
|
192
|
+
command.query['fields'] = fields unless fields.nil?
|
193
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
194
|
+
execute_or_queue_command(command, &block)
|
195
|
+
end
|
196
|
+
|
197
|
+
# Deletes a dataset. For the definitions of datasets and other genomics
|
198
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
199
|
+
# genomics/fundamentals-of-google-genomics)
|
200
|
+
# @param [String] dataset_id
|
201
|
+
# The ID of the dataset to be deleted.
|
202
|
+
# @param [String] fields
|
203
|
+
# Selector specifying which fields to include in a partial response.
|
204
|
+
# @param [String] quota_user
|
205
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
206
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
207
|
+
# @param [Google::Apis::RequestOptions] options
|
208
|
+
# Request-specific options
|
209
|
+
#
|
210
|
+
# @yield [result, err] Result & error if block supplied
|
211
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
|
212
|
+
# @yieldparam err [StandardError] error object if request failed
|
213
|
+
#
|
214
|
+
# @return [Google::Apis::GenomicsV1::Empty]
|
215
|
+
#
|
216
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
217
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
218
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
219
|
+
def delete_dataset(dataset_id, fields: nil, quota_user: nil, options: nil, &block)
|
220
|
+
command = make_simple_command(:delete, 'v1/datasets/{datasetId}', options)
|
221
|
+
command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
|
222
|
+
command.response_class = Google::Apis::GenomicsV1::Empty
|
223
|
+
command.params['datasetId'] = dataset_id unless dataset_id.nil?
|
224
|
+
command.query['fields'] = fields unless fields.nil?
|
225
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
226
|
+
execute_or_queue_command(command, &block)
|
227
|
+
end
|
228
|
+
|
229
|
+
# Undeletes a dataset by restoring a dataset which was deleted via this API. For
|
230
|
+
# the definitions of datasets and other genomics resources, see [Fundamentals of
|
231
|
+
# Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
|
232
|
+
# genomics) This operation is only possible for a week after the deletion
|
233
|
+
# occurred.
|
234
|
+
# @param [String] dataset_id
|
235
|
+
# The ID of the dataset to be undeleted.
|
236
|
+
# @param [Google::Apis::GenomicsV1::UndeleteDatasetRequest] undelete_dataset_request_object
|
237
|
+
# @param [String] fields
|
238
|
+
# Selector specifying which fields to include in a partial response.
|
239
|
+
# @param [String] quota_user
|
240
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
241
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
242
|
+
# @param [Google::Apis::RequestOptions] options
|
243
|
+
# Request-specific options
|
244
|
+
#
|
245
|
+
# @yield [result, err] Result & error if block supplied
|
246
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Dataset] parsed result object
|
247
|
+
# @yieldparam err [StandardError] error object if request failed
|
248
|
+
#
|
249
|
+
# @return [Google::Apis::GenomicsV1::Dataset]
|
250
|
+
#
|
251
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
252
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
253
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
254
|
+
def undelete_dataset(dataset_id, undelete_dataset_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
255
|
+
command = make_simple_command(:post, 'v1/datasets/{datasetId}:undelete', options)
|
256
|
+
command.request_representation = Google::Apis::GenomicsV1::UndeleteDatasetRequest::Representation
|
257
|
+
command.request_object = undelete_dataset_request_object
|
258
|
+
command.response_representation = Google::Apis::GenomicsV1::Dataset::Representation
|
259
|
+
command.response_class = Google::Apis::GenomicsV1::Dataset
|
260
|
+
command.params['datasetId'] = dataset_id unless dataset_id.nil?
|
261
|
+
command.query['fields'] = fields unless fields.nil?
|
262
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
263
|
+
execute_or_queue_command(command, &block)
|
264
|
+
end
|
265
|
+
|
266
|
+
# Sets the access control policy on the specified dataset. Replaces any existing
|
267
|
+
# policy. For the definitions of datasets and other genomics resources, see [
|
268
|
+
# Fundamentals of Google Genomics](https://cloud.google.com/genomics/
|
269
|
+
# fundamentals-of-google-genomics) See Setting a Policy for more information.
|
270
|
+
# @param [String] resource
|
271
|
+
# REQUIRED: The resource for which policy is being specified. Format is `
|
272
|
+
# datasets/`.
|
273
|
+
# @param [Google::Apis::GenomicsV1::SetIamPolicyRequest] set_iam_policy_request_object
|
274
|
+
# @param [String] fields
|
275
|
+
# Selector specifying which fields to include in a partial response.
|
276
|
+
# @param [String] quota_user
|
277
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
278
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
279
|
+
# @param [Google::Apis::RequestOptions] options
|
280
|
+
# Request-specific options
|
281
|
+
#
|
282
|
+
# @yield [result, err] Result & error if block supplied
|
283
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Policy] parsed result object
|
284
|
+
# @yieldparam err [StandardError] error object if request failed
|
285
|
+
#
|
286
|
+
# @return [Google::Apis::GenomicsV1::Policy]
|
287
|
+
#
|
288
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
289
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
290
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
291
|
+
def set_dataset_iam_policy(resource, set_iam_policy_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
292
|
+
command = make_simple_command(:post, 'v1/{+resource}:setIamPolicy', options)
|
293
|
+
command.request_representation = Google::Apis::GenomicsV1::SetIamPolicyRequest::Representation
|
294
|
+
command.request_object = set_iam_policy_request_object
|
295
|
+
command.response_representation = Google::Apis::GenomicsV1::Policy::Representation
|
296
|
+
command.response_class = Google::Apis::GenomicsV1::Policy
|
297
|
+
command.params['resource'] = resource unless resource.nil?
|
298
|
+
command.query['fields'] = fields unless fields.nil?
|
299
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
300
|
+
execute_or_queue_command(command, &block)
|
301
|
+
end
|
302
|
+
|
303
|
+
# Gets the access control policy for the dataset. This is empty if the policy or
|
304
|
+
# resource does not exist. See Getting a Policy for more information. For the
|
305
|
+
# definitions of datasets and other genomics resources, see [Fundamentals of
|
306
|
+
# Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
|
307
|
+
# genomics)
|
308
|
+
# @param [String] resource
|
309
|
+
# REQUIRED: The resource for which policy is being specified. Format is `
|
310
|
+
# datasets/`.
|
311
|
+
# @param [Google::Apis::GenomicsV1::GetIamPolicyRequest] get_iam_policy_request_object
|
312
|
+
# @param [String] fields
|
313
|
+
# Selector specifying which fields to include in a partial response.
|
314
|
+
# @param [String] quota_user
|
315
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
316
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
317
|
+
# @param [Google::Apis::RequestOptions] options
|
318
|
+
# Request-specific options
|
319
|
+
#
|
320
|
+
# @yield [result, err] Result & error if block supplied
|
321
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Policy] parsed result object
|
322
|
+
# @yieldparam err [StandardError] error object if request failed
|
323
|
+
#
|
324
|
+
# @return [Google::Apis::GenomicsV1::Policy]
|
325
|
+
#
|
326
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
327
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
328
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
329
|
+
def get_dataset_iam_policy(resource, get_iam_policy_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
330
|
+
command = make_simple_command(:post, 'v1/{+resource}:getIamPolicy', options)
|
331
|
+
command.request_representation = Google::Apis::GenomicsV1::GetIamPolicyRequest::Representation
|
332
|
+
command.request_object = get_iam_policy_request_object
|
333
|
+
command.response_representation = Google::Apis::GenomicsV1::Policy::Representation
|
334
|
+
command.response_class = Google::Apis::GenomicsV1::Policy
|
335
|
+
command.params['resource'] = resource unless resource.nil?
|
336
|
+
command.query['fields'] = fields unless fields.nil?
|
337
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
338
|
+
execute_or_queue_command(command, &block)
|
339
|
+
end
|
340
|
+
|
341
|
+
# Returns permissions that a caller has on the specified resource. See Testing
|
342
|
+
# Permissions for more information. For the definitions of datasets and other
|
343
|
+
# genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
|
344
|
+
# com/genomics/fundamentals-of-google-genomics)
|
345
|
+
# @param [String] resource
|
346
|
+
# REQUIRED: The resource for which policy is being specified. Format is `
|
347
|
+
# datasets/`.
|
348
|
+
# @param [Google::Apis::GenomicsV1::TestIamPermissionsRequest] test_iam_permissions_request_object
|
349
|
+
# @param [String] fields
|
350
|
+
# Selector specifying which fields to include in a partial response.
|
351
|
+
# @param [String] quota_user
|
352
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
353
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
354
|
+
# @param [Google::Apis::RequestOptions] options
|
355
|
+
# Request-specific options
|
356
|
+
#
|
357
|
+
# @yield [result, err] Result & error if block supplied
|
358
|
+
# @yieldparam result [Google::Apis::GenomicsV1::TestIamPermissionsResponse] parsed result object
|
359
|
+
# @yieldparam err [StandardError] error object if request failed
|
360
|
+
#
|
361
|
+
# @return [Google::Apis::GenomicsV1::TestIamPermissionsResponse]
|
362
|
+
#
|
363
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
364
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
365
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
366
|
+
def test_dataset_iam_permissions(resource, test_iam_permissions_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
367
|
+
command = make_simple_command(:post, 'v1/{+resource}:testIamPermissions', options)
|
368
|
+
command.request_representation = Google::Apis::GenomicsV1::TestIamPermissionsRequest::Representation
|
369
|
+
command.request_object = test_iam_permissions_request_object
|
370
|
+
command.response_representation = Google::Apis::GenomicsV1::TestIamPermissionsResponse::Representation
|
371
|
+
command.response_class = Google::Apis::GenomicsV1::TestIamPermissionsResponse
|
372
|
+
command.params['resource'] = resource unless resource.nil?
|
373
|
+
command.query['fields'] = fields unless fields.nil?
|
374
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
375
|
+
execute_or_queue_command(command, &block)
|
376
|
+
end
|
377
|
+
|
378
|
+
# Gets the latest state of a long-running operation. Clients can use this method
|
379
|
+
# to poll the operation result at intervals as recommended by the API service.
|
380
|
+
# @param [String] name
|
381
|
+
# The name of the operation resource.
|
382
|
+
# @param [String] fields
|
383
|
+
# Selector specifying which fields to include in a partial response.
|
384
|
+
# @param [String] quota_user
|
385
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
386
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
387
|
+
# @param [Google::Apis::RequestOptions] options
|
388
|
+
# Request-specific options
|
389
|
+
#
|
390
|
+
# @yield [result, err] Result & error if block supplied
|
391
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Operation] parsed result object
|
392
|
+
# @yieldparam err [StandardError] error object if request failed
|
393
|
+
#
|
394
|
+
# @return [Google::Apis::GenomicsV1::Operation]
|
395
|
+
#
|
396
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
397
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
398
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
399
|
+
def get_operation(name, fields: nil, quota_user: nil, options: nil, &block)
|
400
|
+
command = make_simple_command(:get, 'v1/{+name}', options)
|
401
|
+
command.response_representation = Google::Apis::GenomicsV1::Operation::Representation
|
402
|
+
command.response_class = Google::Apis::GenomicsV1::Operation
|
403
|
+
command.params['name'] = name unless name.nil?
|
404
|
+
command.query['fields'] = fields unless fields.nil?
|
405
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
406
|
+
execute_or_queue_command(command, &block)
|
407
|
+
end
|
408
|
+
|
409
|
+
# Lists operations that match the specified filter in the request.
|
410
|
+
# @param [String] name
|
411
|
+
# The name of the operation collection.
|
412
|
+
# @param [String] filter
|
413
|
+
# A string for filtering Operations. The following filter fields are supported: *
|
414
|
+
# projectId: Required. Corresponds to OperationMetadata.projectId. * createTime:
|
415
|
+
# The time this job was created, in seconds from the [epoch](http://en.
|
416
|
+
# wikipedia.org/wiki/Unix_time). Can use `>=` and/or `= 1432140000` * `projectId
|
417
|
+
# = my-project AND createTime >= 1432140000 AND createTime <= 1432150000 AND
|
418
|
+
# status = RUNNING`
|
419
|
+
# @param [Fixnum] page_size
|
420
|
+
# The maximum number of results to return. If unspecified, defaults to 256. The
|
421
|
+
# maximum value is 2048.
|
422
|
+
# @param [String] page_token
|
423
|
+
# The standard list page token.
|
424
|
+
# @param [String] fields
|
425
|
+
# Selector specifying which fields to include in a partial response.
|
426
|
+
# @param [String] quota_user
|
427
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
428
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
429
|
+
# @param [Google::Apis::RequestOptions] options
|
430
|
+
# Request-specific options
|
431
|
+
#
|
432
|
+
# @yield [result, err] Result & error if block supplied
|
433
|
+
# @yieldparam result [Google::Apis::GenomicsV1::ListOperationsResponse] parsed result object
|
434
|
+
# @yieldparam err [StandardError] error object if request failed
|
435
|
+
#
|
436
|
+
# @return [Google::Apis::GenomicsV1::ListOperationsResponse]
|
437
|
+
#
|
438
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
439
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
440
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
441
|
+
def list_operations(name, filter: nil, page_size: nil, page_token: nil, fields: nil, quota_user: nil, options: nil, &block)
|
442
|
+
command = make_simple_command(:get, 'v1/{+name}', options)
|
443
|
+
command.response_representation = Google::Apis::GenomicsV1::ListOperationsResponse::Representation
|
444
|
+
command.response_class = Google::Apis::GenomicsV1::ListOperationsResponse
|
445
|
+
command.params['name'] = name unless name.nil?
|
446
|
+
command.query['filter'] = filter unless filter.nil?
|
447
|
+
command.query['pageSize'] = page_size unless page_size.nil?
|
448
|
+
command.query['pageToken'] = page_token unless page_token.nil?
|
449
|
+
command.query['fields'] = fields unless fields.nil?
|
450
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
451
|
+
execute_or_queue_command(command, &block)
|
452
|
+
end
|
453
|
+
|
454
|
+
# Starts asynchronous cancellation on a long-running operation. The server makes
|
455
|
+
# a best effort to cancel the operation, but success is not guaranteed. Clients
|
456
|
+
# may use Operations.GetOperation or Operations.ListOperations to check whether
|
457
|
+
# the cancellation succeeded or the operation completed despite cancellation.
|
458
|
+
# @param [String] name
|
459
|
+
# The name of the operation resource to be cancelled.
|
460
|
+
# @param [Google::Apis::GenomicsV1::CancelOperationRequest] cancel_operation_request_object
|
461
|
+
# @param [String] fields
|
462
|
+
# Selector specifying which fields to include in a partial response.
|
463
|
+
# @param [String] quota_user
|
464
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
465
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
466
|
+
# @param [Google::Apis::RequestOptions] options
|
467
|
+
# Request-specific options
|
468
|
+
#
|
469
|
+
# @yield [result, err] Result & error if block supplied
|
470
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
|
471
|
+
# @yieldparam err [StandardError] error object if request failed
|
472
|
+
#
|
473
|
+
# @return [Google::Apis::GenomicsV1::Empty]
|
474
|
+
#
|
475
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
476
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
477
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
478
|
+
def cancel_operation(name, cancel_operation_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
479
|
+
command = make_simple_command(:post, 'v1/{+name}:cancel', options)
|
480
|
+
command.request_representation = Google::Apis::GenomicsV1::CancelOperationRequest::Representation
|
481
|
+
command.request_object = cancel_operation_request_object
|
482
|
+
command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
|
483
|
+
command.response_class = Google::Apis::GenomicsV1::Empty
|
484
|
+
command.params['name'] = name unless name.nil?
|
485
|
+
command.query['fields'] = fields unless fields.nil?
|
486
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
487
|
+
execute_or_queue_command(command, &block)
|
488
|
+
end
|
489
|
+
|
490
|
+
# Creates read group sets by asynchronously importing the provided information.
|
491
|
+
# For the definitions of read group sets and other genomics resources, see [
|
492
|
+
# Fundamentals of Google Genomics](https://cloud.google.com/genomics/
|
493
|
+
# fundamentals-of-google-genomics) The caller must have WRITE permissions to the
|
494
|
+
# dataset. ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf)
|
495
|
+
# import - Tags will be converted to strings - tag types are not preserved -
|
496
|
+
# Comments (`@CO`) in the input file header will not be preserved - Original
|
497
|
+
# header order of references (`@SQ`) will not be preserved - Any reverse
|
498
|
+
# stranded unmapped reads will be reverse complemented, and their qualities (
|
499
|
+
# also the "BQ" and "OQ" tags, if any) will be reversed - Unmapped reads will be
|
500
|
+
# stripped of positional information (reference name and position)
|
501
|
+
# @param [Google::Apis::GenomicsV1::ImportReadGroupSetsRequest] import_read_group_sets_request_object
|
502
|
+
# @param [String] fields
|
503
|
+
# Selector specifying which fields to include in a partial response.
|
504
|
+
# @param [String] quota_user
|
505
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
506
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
507
|
+
# @param [Google::Apis::RequestOptions] options
|
508
|
+
# Request-specific options
|
509
|
+
#
|
510
|
+
# @yield [result, err] Result & error if block supplied
|
511
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Operation] parsed result object
|
512
|
+
# @yieldparam err [StandardError] error object if request failed
|
513
|
+
#
|
514
|
+
# @return [Google::Apis::GenomicsV1::Operation]
|
515
|
+
#
|
516
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
517
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
518
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
519
|
+
def import_read_group_sets(import_read_group_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
520
|
+
command = make_simple_command(:post, 'v1/readgroupsets:import', options)
|
521
|
+
command.request_representation = Google::Apis::GenomicsV1::ImportReadGroupSetsRequest::Representation
|
522
|
+
command.request_object = import_read_group_sets_request_object
|
523
|
+
command.response_representation = Google::Apis::GenomicsV1::Operation::Representation
|
524
|
+
command.response_class = Google::Apis::GenomicsV1::Operation
|
525
|
+
command.query['fields'] = fields unless fields.nil?
|
526
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
527
|
+
execute_or_queue_command(command, &block)
|
528
|
+
end
|
529
|
+
|
530
|
+
# Exports a read group set to a BAM file in Google Cloud Storage. For the
|
531
|
+
# definitions of read group sets and other genomics resources, see [Fundamentals
|
532
|
+
# of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
|
533
|
+
# genomics) Note that currently there may be some differences between exported
|
534
|
+
# BAM files and the original BAM file at the time of import. See [
|
535
|
+
# ImportReadGroupSets](google.genomics.v1.ReadServiceV1.ImportReadGroupSets) for
|
536
|
+
# caveats.
|
537
|
+
# @param [String] read_group_set_id
|
538
|
+
# Required. The ID of the read group set to export. The caller must have READ
|
539
|
+
# access to this read group set.
|
540
|
+
# @param [Google::Apis::GenomicsV1::ExportReadGroupSetRequest] export_read_group_set_request_object
|
541
|
+
# @param [String] fields
|
542
|
+
# Selector specifying which fields to include in a partial response.
|
543
|
+
# @param [String] quota_user
|
544
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
545
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
546
|
+
# @param [Google::Apis::RequestOptions] options
|
547
|
+
# Request-specific options
|
548
|
+
#
|
549
|
+
# @yield [result, err] Result & error if block supplied
|
550
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Operation] parsed result object
|
551
|
+
# @yieldparam err [StandardError] error object if request failed
|
552
|
+
#
|
553
|
+
# @return [Google::Apis::GenomicsV1::Operation]
|
554
|
+
#
|
555
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
556
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
557
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
558
|
+
def export_read_group_sets(read_group_set_id, export_read_group_set_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
559
|
+
command = make_simple_command(:post, 'v1/readgroupsets/{readGroupSetId}:export', options)
|
560
|
+
command.request_representation = Google::Apis::GenomicsV1::ExportReadGroupSetRequest::Representation
|
561
|
+
command.request_object = export_read_group_set_request_object
|
562
|
+
command.response_representation = Google::Apis::GenomicsV1::Operation::Representation
|
563
|
+
command.response_class = Google::Apis::GenomicsV1::Operation
|
564
|
+
command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
|
565
|
+
command.query['fields'] = fields unless fields.nil?
|
566
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
567
|
+
execute_or_queue_command(command, &block)
|
568
|
+
end
|
569
|
+
|
570
|
+
# Searches for read group sets matching the criteria. For the definitions of
|
571
|
+
# read group sets and other genomics resources, see [Fundamentals of Google
|
572
|
+
# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
573
|
+
# Implements [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/
|
574
|
+
# schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
|
575
|
+
# @param [Google::Apis::GenomicsV1::SearchReadGroupSetsRequest] search_read_group_sets_request_object
|
576
|
+
# @param [String] fields
|
577
|
+
# Selector specifying which fields to include in a partial response.
|
578
|
+
# @param [String] quota_user
|
579
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
580
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
581
|
+
# @param [Google::Apis::RequestOptions] options
|
582
|
+
# Request-specific options
|
583
|
+
#
|
584
|
+
# @yield [result, err] Result & error if block supplied
|
585
|
+
# @yieldparam result [Google::Apis::GenomicsV1::SearchReadGroupSetsResponse] parsed result object
|
586
|
+
# @yieldparam err [StandardError] error object if request failed
|
587
|
+
#
|
588
|
+
# @return [Google::Apis::GenomicsV1::SearchReadGroupSetsResponse]
|
589
|
+
#
|
590
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
591
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
592
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
593
|
+
def search_read_group_sets(search_read_group_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
594
|
+
command = make_simple_command(:post, 'v1/readgroupsets/search', options)
|
595
|
+
command.request_representation = Google::Apis::GenomicsV1::SearchReadGroupSetsRequest::Representation
|
596
|
+
command.request_object = search_read_group_sets_request_object
|
597
|
+
command.response_representation = Google::Apis::GenomicsV1::SearchReadGroupSetsResponse::Representation
|
598
|
+
command.response_class = Google::Apis::GenomicsV1::SearchReadGroupSetsResponse
|
599
|
+
command.query['fields'] = fields unless fields.nil?
|
600
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
601
|
+
execute_or_queue_command(command, &block)
|
602
|
+
end
|
603
|
+
|
604
|
+
# Updates a read group set. For the definitions of read group sets and other
|
605
|
+
# genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
|
606
|
+
# com/genomics/fundamentals-of-google-genomics) This method supports patch
|
607
|
+
# semantics.
|
608
|
+
# @param [String] read_group_set_id
|
609
|
+
# The ID of the read group set to be updated. The caller must have WRITE
|
610
|
+
# permissions to the dataset associated with this read group set.
|
611
|
+
# @param [Google::Apis::GenomicsV1::ReadGroupSet] read_group_set_object
|
612
|
+
# @param [String] update_mask
|
613
|
+
# An optional mask specifying which fields to update. Supported fields: * name. *
|
614
|
+
# referenceSetId. Leaving `updateMask` unset is equivalent to specifying all
|
615
|
+
# mutable fields.
|
616
|
+
# @param [String] fields
|
617
|
+
# Selector specifying which fields to include in a partial response.
|
618
|
+
# @param [String] quota_user
|
619
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
620
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
621
|
+
# @param [Google::Apis::RequestOptions] options
|
622
|
+
# Request-specific options
|
623
|
+
#
|
624
|
+
# @yield [result, err] Result & error if block supplied
|
625
|
+
# @yieldparam result [Google::Apis::GenomicsV1::ReadGroupSet] parsed result object
|
626
|
+
# @yieldparam err [StandardError] error object if request failed
|
627
|
+
#
|
628
|
+
# @return [Google::Apis::GenomicsV1::ReadGroupSet]
|
629
|
+
#
|
630
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
631
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
632
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
633
|
+
def patch_read_group_set(read_group_set_id, read_group_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block)
|
634
|
+
command = make_simple_command(:patch, 'v1/readgroupsets/{readGroupSetId}', options)
|
635
|
+
command.request_representation = Google::Apis::GenomicsV1::ReadGroupSet::Representation
|
636
|
+
command.request_object = read_group_set_object
|
637
|
+
command.response_representation = Google::Apis::GenomicsV1::ReadGroupSet::Representation
|
638
|
+
command.response_class = Google::Apis::GenomicsV1::ReadGroupSet
|
639
|
+
command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
|
640
|
+
command.query['updateMask'] = update_mask unless update_mask.nil?
|
641
|
+
command.query['fields'] = fields unless fields.nil?
|
642
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
643
|
+
execute_or_queue_command(command, &block)
|
644
|
+
end
|
645
|
+
|
646
|
+
# Deletes a read group set. For the definitions of read group sets and other
|
647
|
+
# genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
|
648
|
+
# com/genomics/fundamentals-of-google-genomics)
|
649
|
+
# @param [String] read_group_set_id
|
650
|
+
# The ID of the read group set to be deleted. The caller must have WRITE
|
651
|
+
# permissions to the dataset associated with this read group set.
|
652
|
+
# @param [String] fields
|
653
|
+
# Selector specifying which fields to include in a partial response.
|
654
|
+
# @param [String] quota_user
|
655
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
656
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
657
|
+
# @param [Google::Apis::RequestOptions] options
|
658
|
+
# Request-specific options
|
659
|
+
#
|
660
|
+
# @yield [result, err] Result & error if block supplied
|
661
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
|
662
|
+
# @yieldparam err [StandardError] error object if request failed
|
663
|
+
#
|
664
|
+
# @return [Google::Apis::GenomicsV1::Empty]
|
665
|
+
#
|
666
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
667
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
668
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
669
|
+
def delete_read_group_set(read_group_set_id, fields: nil, quota_user: nil, options: nil, &block)
|
670
|
+
command = make_simple_command(:delete, 'v1/readgroupsets/{readGroupSetId}', options)
|
671
|
+
command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
|
672
|
+
command.response_class = Google::Apis::GenomicsV1::Empty
|
673
|
+
command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
|
674
|
+
command.query['fields'] = fields unless fields.nil?
|
675
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
676
|
+
execute_or_queue_command(command, &block)
|
677
|
+
end
|
678
|
+
|
679
|
+
# Gets a read group set by ID. For the definitions of read group sets and other
|
680
|
+
# genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
|
681
|
+
# com/genomics/fundamentals-of-google-genomics)
|
682
|
+
# @param [String] read_group_set_id
|
683
|
+
# The ID of the read group set.
|
684
|
+
# @param [String] fields
|
685
|
+
# Selector specifying which fields to include in a partial response.
|
686
|
+
# @param [String] quota_user
|
687
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
688
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
689
|
+
# @param [Google::Apis::RequestOptions] options
|
690
|
+
# Request-specific options
|
691
|
+
#
|
692
|
+
# @yield [result, err] Result & error if block supplied
|
693
|
+
# @yieldparam result [Google::Apis::GenomicsV1::ReadGroupSet] parsed result object
|
694
|
+
# @yieldparam err [StandardError] error object if request failed
|
695
|
+
#
|
696
|
+
# @return [Google::Apis::GenomicsV1::ReadGroupSet]
|
697
|
+
#
|
698
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
699
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
700
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
701
|
+
def get_read_group_set(read_group_set_id, fields: nil, quota_user: nil, options: nil, &block)
|
702
|
+
command = make_simple_command(:get, 'v1/readgroupsets/{readGroupSetId}', options)
|
703
|
+
command.response_representation = Google::Apis::GenomicsV1::ReadGroupSet::Representation
|
704
|
+
command.response_class = Google::Apis::GenomicsV1::ReadGroupSet
|
705
|
+
command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
|
706
|
+
command.query['fields'] = fields unless fields.nil?
|
707
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
708
|
+
execute_or_queue_command(command, &block)
|
709
|
+
end
|
710
|
+
|
711
|
+
# Lists fixed width coverage buckets for a read group set, each of which
|
712
|
+
# correspond to a range of a reference sequence. Each bucket summarizes coverage
|
713
|
+
# information across its corresponding genomic range. For the definitions of
|
714
|
+
# read group sets and other genomics resources, see [Fundamentals of Google
|
715
|
+
# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
716
|
+
# Coverage is defined as the number of reads which are aligned to a given base
|
717
|
+
# in the reference sequence. Coverage buckets are available at several
|
718
|
+
# precomputed bucket widths, enabling retrieval of various coverage 'zoom levels'
|
719
|
+
# . The caller must have READ permissions for the target read group set.
|
720
|
+
# @param [String] read_group_set_id
|
721
|
+
# Required. The ID of the read group set over which coverage is requested.
|
722
|
+
# @param [String] reference_name
|
723
|
+
# The name of the reference to query, within the reference set associated with
|
724
|
+
# this query. Optional.
|
725
|
+
# @param [String] start
|
726
|
+
# The start position of the range on the reference, 0-based inclusive. If
|
727
|
+
# specified, `referenceName` must also be specified. Defaults to 0.
|
728
|
+
# @param [String] end_
|
729
|
+
# The end position of the range on the reference, 0-based exclusive. If
|
730
|
+
# specified, `referenceName` must also be specified. If unset or 0, defaults to
|
731
|
+
# the length of the reference.
|
732
|
+
# @param [String] target_bucket_width
|
733
|
+
# The desired width of each reported coverage bucket in base pairs. This will be
|
734
|
+
# rounded down to the nearest precomputed bucket width; the value of which is
|
735
|
+
# returned as `bucketWidth` in the response. Defaults to infinity (each bucket
|
736
|
+
# spans an entire reference sequence) or the length of the target range, if
|
737
|
+
# specified. The smallest precomputed `bucketWidth` is currently 2048 base pairs;
|
738
|
+
# this is subject to change.
|
739
|
+
# @param [String] page_token
|
740
|
+
# The continuation token, which is used to page through large result sets. To
|
741
|
+
# get the next page of results, set this parameter to the value of `
|
742
|
+
# nextPageToken` from the previous response.
|
743
|
+
# @param [Fixnum] page_size
|
744
|
+
# The maximum number of results to return in a single page. If unspecified,
|
745
|
+
# defaults to 1024. The maximum value is 2048.
|
746
|
+
# @param [String] fields
|
747
|
+
# Selector specifying which fields to include in a partial response.
|
748
|
+
# @param [String] quota_user
|
749
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
750
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
751
|
+
# @param [Google::Apis::RequestOptions] options
|
752
|
+
# Request-specific options
|
753
|
+
#
|
754
|
+
# @yield [result, err] Result & error if block supplied
|
755
|
+
# @yieldparam result [Google::Apis::GenomicsV1::ListCoverageBucketsResponse] parsed result object
|
756
|
+
# @yieldparam err [StandardError] error object if request failed
|
757
|
+
#
|
758
|
+
# @return [Google::Apis::GenomicsV1::ListCoverageBucketsResponse]
|
759
|
+
#
|
760
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
761
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
762
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
763
|
+
def list_coverage_buckets(read_group_set_id, reference_name: nil, start: nil, end_: nil, target_bucket_width: nil, page_token: nil, page_size: nil, fields: nil, quota_user: nil, options: nil, &block)
|
764
|
+
command = make_simple_command(:get, 'v1/readgroupsets/{readGroupSetId}/coveragebuckets', options)
|
765
|
+
command.response_representation = Google::Apis::GenomicsV1::ListCoverageBucketsResponse::Representation
|
766
|
+
command.response_class = Google::Apis::GenomicsV1::ListCoverageBucketsResponse
|
767
|
+
command.params['readGroupSetId'] = read_group_set_id unless read_group_set_id.nil?
|
768
|
+
command.query['referenceName'] = reference_name unless reference_name.nil?
|
769
|
+
command.query['start'] = start unless start.nil?
|
770
|
+
command.query['end'] = end_ unless end_.nil?
|
771
|
+
command.query['targetBucketWidth'] = target_bucket_width unless target_bucket_width.nil?
|
772
|
+
command.query['pageToken'] = page_token unless page_token.nil?
|
773
|
+
command.query['pageSize'] = page_size unless page_size.nil?
|
774
|
+
command.query['fields'] = fields unless fields.nil?
|
775
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
776
|
+
execute_or_queue_command(command, &block)
|
777
|
+
end
|
778
|
+
|
779
|
+
# Gets a list of reads for one or more read group sets. For the definitions of
|
780
|
+
# read group sets and other genomics resources, see [Fundamentals of Google
|
781
|
+
# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
782
|
+
# Reads search operates over a genomic coordinate space of reference sequence &
|
783
|
+
# position defined over the reference sequences to which the requested read
|
784
|
+
# group sets are aligned. If a target positional range is specified, search
|
785
|
+
# returns all reads whose alignment to the reference genome overlap the range. A
|
786
|
+
# query which specifies only read group set IDs yields all reads in those read
|
787
|
+
# group sets, including unmapped reads. All reads returned (including reads on
|
788
|
+
# subsequent pages) are ordered by genomic coordinate (by reference sequence,
|
789
|
+
# then position). Reads with equivalent genomic coordinates are returned in an
|
790
|
+
# unspecified order. This order is consistent, such that two queries for the
|
791
|
+
# same content (regardless of page size) yield reads in the same order across
|
792
|
+
# their respective streams of paginated responses. Implements [GlobalAllianceApi.
|
793
|
+
# searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/
|
794
|
+
# avro/readmethods.avdl#L85).
|
795
|
+
# @param [Google::Apis::GenomicsV1::SearchReadsRequest] search_reads_request_object
|
796
|
+
# @param [String] fields
|
797
|
+
# Selector specifying which fields to include in a partial response.
|
798
|
+
# @param [String] quota_user
|
799
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
800
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
801
|
+
# @param [Google::Apis::RequestOptions] options
|
802
|
+
# Request-specific options
|
803
|
+
#
|
804
|
+
# @yield [result, err] Result & error if block supplied
|
805
|
+
# @yieldparam result [Google::Apis::GenomicsV1::SearchReadsResponse] parsed result object
|
806
|
+
# @yieldparam err [StandardError] error object if request failed
|
807
|
+
#
|
808
|
+
# @return [Google::Apis::GenomicsV1::SearchReadsResponse]
|
809
|
+
#
|
810
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
811
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
812
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
813
|
+
def search_reads(search_reads_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
814
|
+
command = make_simple_command(:post, 'v1/reads/search', options)
|
815
|
+
command.request_representation = Google::Apis::GenomicsV1::SearchReadsRequest::Representation
|
816
|
+
command.request_object = search_reads_request_object
|
817
|
+
command.response_representation = Google::Apis::GenomicsV1::SearchReadsResponse::Representation
|
818
|
+
command.response_class = Google::Apis::GenomicsV1::SearchReadsResponse
|
819
|
+
command.query['fields'] = fields unless fields.nil?
|
820
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
821
|
+
execute_or_queue_command(command, &block)
|
822
|
+
end
|
823
|
+
|
824
|
+
# Returns a stream of all the reads matching the search request, ordered by
|
825
|
+
# reference name, position, and ID.
|
826
|
+
# @param [Google::Apis::GenomicsV1::StreamReadsRequest] stream_reads_request_object
|
827
|
+
# @param [String] fields
|
828
|
+
# Selector specifying which fields to include in a partial response.
|
829
|
+
# @param [String] quota_user
|
830
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
831
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
832
|
+
# @param [Google::Apis::RequestOptions] options
|
833
|
+
# Request-specific options
|
834
|
+
#
|
835
|
+
# @yield [result, err] Result & error if block supplied
|
836
|
+
# @yieldparam result [Google::Apis::GenomicsV1::StreamReadsResponse] parsed result object
|
837
|
+
# @yieldparam err [StandardError] error object if request failed
|
838
|
+
#
|
839
|
+
# @return [Google::Apis::GenomicsV1::StreamReadsResponse]
|
840
|
+
#
|
841
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
842
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
843
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
844
|
+
def stream_reads(stream_reads_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
845
|
+
command = make_simple_command(:post, 'v1/reads:stream', options)
|
846
|
+
command.request_representation = Google::Apis::GenomicsV1::StreamReadsRequest::Representation
|
847
|
+
command.request_object = stream_reads_request_object
|
848
|
+
command.response_representation = Google::Apis::GenomicsV1::StreamReadsResponse::Representation
|
849
|
+
command.response_class = Google::Apis::GenomicsV1::StreamReadsResponse
|
850
|
+
command.query['fields'] = fields unless fields.nil?
|
851
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
852
|
+
execute_or_queue_command(command, &block)
|
853
|
+
end
|
854
|
+
|
855
|
+
# Searches for reference sets which match the given criteria. For the
|
856
|
+
# definitions of references and other genomics resources, see [Fundamentals of
|
857
|
+
# Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
|
858
|
+
# genomics) Implements [GlobalAllianceApi.searchReferenceSets](https://github.
|
859
|
+
# com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#
|
860
|
+
# L71)
|
861
|
+
# @param [Google::Apis::GenomicsV1::SearchReferenceSetsRequest] search_reference_sets_request_object
|
862
|
+
# @param [String] fields
|
863
|
+
# Selector specifying which fields to include in a partial response.
|
864
|
+
# @param [String] quota_user
|
865
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
866
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
867
|
+
# @param [Google::Apis::RequestOptions] options
|
868
|
+
# Request-specific options
|
869
|
+
#
|
870
|
+
# @yield [result, err] Result & error if block supplied
|
871
|
+
# @yieldparam result [Google::Apis::GenomicsV1::SearchReferenceSetsResponse] parsed result object
|
872
|
+
# @yieldparam err [StandardError] error object if request failed
|
873
|
+
#
|
874
|
+
# @return [Google::Apis::GenomicsV1::SearchReferenceSetsResponse]
|
875
|
+
#
|
876
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
877
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
878
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
879
|
+
def search_reference_sets(search_reference_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
880
|
+
command = make_simple_command(:post, 'v1/referencesets/search', options)
|
881
|
+
command.request_representation = Google::Apis::GenomicsV1::SearchReferenceSetsRequest::Representation
|
882
|
+
command.request_object = search_reference_sets_request_object
|
883
|
+
command.response_representation = Google::Apis::GenomicsV1::SearchReferenceSetsResponse::Representation
|
884
|
+
command.response_class = Google::Apis::GenomicsV1::SearchReferenceSetsResponse
|
885
|
+
command.query['fields'] = fields unless fields.nil?
|
886
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
887
|
+
execute_or_queue_command(command, &block)
|
888
|
+
end
|
889
|
+
|
890
|
+
# Gets a reference set. For the definitions of references and other genomics
|
891
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
892
|
+
# genomics/fundamentals-of-google-genomics) Implements [GlobalAllianceApi.
|
893
|
+
# getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/
|
894
|
+
# resources/avro/referencemethods.avdl#L83).
|
895
|
+
# @param [String] reference_set_id
|
896
|
+
# The ID of the reference set.
|
897
|
+
# @param [String] fields
|
898
|
+
# Selector specifying which fields to include in a partial response.
|
899
|
+
# @param [String] quota_user
|
900
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
901
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
902
|
+
# @param [Google::Apis::RequestOptions] options
|
903
|
+
# Request-specific options
|
904
|
+
#
|
905
|
+
# @yield [result, err] Result & error if block supplied
|
906
|
+
# @yieldparam result [Google::Apis::GenomicsV1::ReferenceSet] parsed result object
|
907
|
+
# @yieldparam err [StandardError] error object if request failed
|
908
|
+
#
|
909
|
+
# @return [Google::Apis::GenomicsV1::ReferenceSet]
|
910
|
+
#
|
911
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
912
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
913
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
914
|
+
def get_reference_set(reference_set_id, fields: nil, quota_user: nil, options: nil, &block)
|
915
|
+
command = make_simple_command(:get, 'v1/referencesets/{referenceSetId}', options)
|
916
|
+
command.response_representation = Google::Apis::GenomicsV1::ReferenceSet::Representation
|
917
|
+
command.response_class = Google::Apis::GenomicsV1::ReferenceSet
|
918
|
+
command.params['referenceSetId'] = reference_set_id unless reference_set_id.nil?
|
919
|
+
command.query['fields'] = fields unless fields.nil?
|
920
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
921
|
+
execute_or_queue_command(command, &block)
|
922
|
+
end
|
923
|
+
|
924
|
+
# Searches for references which match the given criteria. For the definitions of
|
925
|
+
# references and other genomics resources, see [Fundamentals of Google Genomics](
|
926
|
+
# https://cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [
|
927
|
+
# GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.
|
928
|
+
# 1/src/main/resources/avro/referencemethods.avdl#L146).
|
929
|
+
# @param [Google::Apis::GenomicsV1::SearchReferencesRequest] search_references_request_object
|
930
|
+
# @param [String] fields
|
931
|
+
# Selector specifying which fields to include in a partial response.
|
932
|
+
# @param [String] quota_user
|
933
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
934
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
935
|
+
# @param [Google::Apis::RequestOptions] options
|
936
|
+
# Request-specific options
|
937
|
+
#
|
938
|
+
# @yield [result, err] Result & error if block supplied
|
939
|
+
# @yieldparam result [Google::Apis::GenomicsV1::SearchReferencesResponse] parsed result object
|
940
|
+
# @yieldparam err [StandardError] error object if request failed
|
941
|
+
#
|
942
|
+
# @return [Google::Apis::GenomicsV1::SearchReferencesResponse]
|
943
|
+
#
|
944
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
945
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
946
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
947
|
+
def search_references(search_references_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
948
|
+
command = make_simple_command(:post, 'v1/references/search', options)
|
949
|
+
command.request_representation = Google::Apis::GenomicsV1::SearchReferencesRequest::Representation
|
950
|
+
command.request_object = search_references_request_object
|
951
|
+
command.response_representation = Google::Apis::GenomicsV1::SearchReferencesResponse::Representation
|
952
|
+
command.response_class = Google::Apis::GenomicsV1::SearchReferencesResponse
|
953
|
+
command.query['fields'] = fields unless fields.nil?
|
954
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
955
|
+
execute_or_queue_command(command, &block)
|
956
|
+
end
|
957
|
+
|
958
|
+
# Gets a reference. For the definitions of references and other genomics
|
959
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
960
|
+
# genomics/fundamentals-of-google-genomics) Implements [GlobalAllianceApi.
|
961
|
+
# getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/
|
962
|
+
# avro/referencemethods.avdl#L158).
|
963
|
+
# @param [String] reference_id
|
964
|
+
# The ID of the reference.
|
965
|
+
# @param [String] fields
|
966
|
+
# Selector specifying which fields to include in a partial response.
|
967
|
+
# @param [String] quota_user
|
968
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
969
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
970
|
+
# @param [Google::Apis::RequestOptions] options
|
971
|
+
# Request-specific options
|
972
|
+
#
|
973
|
+
# @yield [result, err] Result & error if block supplied
|
974
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Reference] parsed result object
|
975
|
+
# @yieldparam err [StandardError] error object if request failed
|
976
|
+
#
|
977
|
+
# @return [Google::Apis::GenomicsV1::Reference]
|
978
|
+
#
|
979
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
980
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
981
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
982
|
+
def get_reference(reference_id, fields: nil, quota_user: nil, options: nil, &block)
|
983
|
+
command = make_simple_command(:get, 'v1/references/{referenceId}', options)
|
984
|
+
command.response_representation = Google::Apis::GenomicsV1::Reference::Representation
|
985
|
+
command.response_class = Google::Apis::GenomicsV1::Reference
|
986
|
+
command.params['referenceId'] = reference_id unless reference_id.nil?
|
987
|
+
command.query['fields'] = fields unless fields.nil?
|
988
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
989
|
+
execute_or_queue_command(command, &block)
|
990
|
+
end
|
991
|
+
|
992
|
+
# Lists the bases in a reference, optionally restricted to a range. For the
|
993
|
+
# definitions of references and other genomics resources, see [Fundamentals of
|
994
|
+
# Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
|
995
|
+
# genomics) Implements [GlobalAllianceApi.getReferenceBases](https://github.com/
|
996
|
+
# ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
|
997
|
+
# @param [String] reference_id
|
998
|
+
# The ID of the reference.
|
999
|
+
# @param [String] start_position
|
1000
|
+
# The start position (0-based) of this query. Defaults to 0.
|
1001
|
+
# @param [String] end_position
|
1002
|
+
# The end position (0-based, exclusive) of this query. Defaults to the length of
|
1003
|
+
# this reference.
|
1004
|
+
# @param [String] page_token
|
1005
|
+
# The continuation token, which is used to page through large result sets. To
|
1006
|
+
# get the next page of results, set this parameter to the value of `
|
1007
|
+
# nextPageToken` from the previous response.
|
1008
|
+
# @param [Fixnum] page_size
|
1009
|
+
# The maximum number of bases to return in a single page. If unspecified,
|
1010
|
+
# defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base
|
1011
|
+
# pairs).
|
1012
|
+
# @param [String] fields
|
1013
|
+
# Selector specifying which fields to include in a partial response.
|
1014
|
+
# @param [String] quota_user
|
1015
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1016
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1017
|
+
# @param [Google::Apis::RequestOptions] options
|
1018
|
+
# Request-specific options
|
1019
|
+
#
|
1020
|
+
# @yield [result, err] Result & error if block supplied
|
1021
|
+
# @yieldparam result [Google::Apis::GenomicsV1::ListBasesResponse] parsed result object
|
1022
|
+
# @yieldparam err [StandardError] error object if request failed
|
1023
|
+
#
|
1024
|
+
# @return [Google::Apis::GenomicsV1::ListBasesResponse]
|
1025
|
+
#
|
1026
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1027
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1028
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1029
|
+
def list_reference_bases(reference_id, start_position: nil, end_position: nil, page_token: nil, page_size: nil, fields: nil, quota_user: nil, options: nil, &block)
|
1030
|
+
command = make_simple_command(:get, 'v1/references/{referenceId}/bases', options)
|
1031
|
+
command.response_representation = Google::Apis::GenomicsV1::ListBasesResponse::Representation
|
1032
|
+
command.response_class = Google::Apis::GenomicsV1::ListBasesResponse
|
1033
|
+
command.params['referenceId'] = reference_id unless reference_id.nil?
|
1034
|
+
command.query['start'] = start_position unless start_position.nil?
|
1035
|
+
command.query['end'] = end_position unless end_position.nil?
|
1036
|
+
command.query['pageToken'] = page_token unless page_token.nil?
|
1037
|
+
command.query['pageSize'] = page_size unless page_size.nil?
|
1038
|
+
command.query['fields'] = fields unless fields.nil?
|
1039
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1040
|
+
execute_or_queue_command(command, &block)
|
1041
|
+
end
|
1042
|
+
|
1043
|
+
# Creates variant data by asynchronously importing the provided information. For
|
1044
|
+
# the definitions of variant sets and other genomics resources, see [
|
1045
|
+
# Fundamentals of Google Genomics](https://cloud.google.com/genomics/
|
1046
|
+
# fundamentals-of-google-genomics) The variants for import will be merged with
|
1047
|
+
# any existing variant that matches its reference sequence, start, end,
|
1048
|
+
# reference bases, and alternative bases. If no such variant exists, a new one
|
1049
|
+
# will be created. When variants are merged, the call information from the new
|
1050
|
+
# variant is added to the existing variant, and other fields (such as key/value
|
1051
|
+
# pairs) are discarded. In particular, this means for merged VCF variants that
|
1052
|
+
# have conflicting INFO fields, some data will be arbitrarily discarded. As a
|
1053
|
+
# special case, for single-sample VCF files, QUAL and FILTER fields will be
|
1054
|
+
# moved to the call level; these are sometimes interpreted in a call-specific
|
1055
|
+
# context. Imported VCF headers are appended to the metadata already in a
|
1056
|
+
# variant set.
|
1057
|
+
# @param [Google::Apis::GenomicsV1::ImportVariantsRequest] import_variants_request_object
|
1058
|
+
# @param [String] fields
|
1059
|
+
# Selector specifying which fields to include in a partial response.
|
1060
|
+
# @param [String] quota_user
|
1061
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1062
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1063
|
+
# @param [Google::Apis::RequestOptions] options
|
1064
|
+
# Request-specific options
|
1065
|
+
#
|
1066
|
+
# @yield [result, err] Result & error if block supplied
|
1067
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Operation] parsed result object
|
1068
|
+
# @yieldparam err [StandardError] error object if request failed
|
1069
|
+
#
|
1070
|
+
# @return [Google::Apis::GenomicsV1::Operation]
|
1071
|
+
#
|
1072
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1073
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1074
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1075
|
+
def import_variants(import_variants_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
1076
|
+
command = make_simple_command(:post, 'v1/variants:import', options)
|
1077
|
+
command.request_representation = Google::Apis::GenomicsV1::ImportVariantsRequest::Representation
|
1078
|
+
command.request_object = import_variants_request_object
|
1079
|
+
command.response_representation = Google::Apis::GenomicsV1::Operation::Representation
|
1080
|
+
command.response_class = Google::Apis::GenomicsV1::Operation
|
1081
|
+
command.query['fields'] = fields unless fields.nil?
|
1082
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1083
|
+
execute_or_queue_command(command, &block)
|
1084
|
+
end
|
1085
|
+
|
1086
|
+
# Gets a list of variants matching the criteria. For the definitions of variants
|
1087
|
+
# and other genomics resources, see [Fundamentals of Google Genomics](https://
|
1088
|
+
# cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [
|
1089
|
+
# GlobalAllianceApi.searchVariants](https://github.com/ga4gh/schemas/blob/v0.5.1/
|
1090
|
+
# src/main/resources/avro/variantmethods.avdl#L126).
|
1091
|
+
# @param [Google::Apis::GenomicsV1::SearchVariantsRequest] search_variants_request_object
|
1092
|
+
# @param [String] fields
|
1093
|
+
# Selector specifying which fields to include in a partial response.
|
1094
|
+
# @param [String] quota_user
|
1095
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1096
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1097
|
+
# @param [Google::Apis::RequestOptions] options
|
1098
|
+
# Request-specific options
|
1099
|
+
#
|
1100
|
+
# @yield [result, err] Result & error if block supplied
|
1101
|
+
# @yieldparam result [Google::Apis::GenomicsV1::SearchVariantsResponse] parsed result object
|
1102
|
+
# @yieldparam err [StandardError] error object if request failed
|
1103
|
+
#
|
1104
|
+
# @return [Google::Apis::GenomicsV1::SearchVariantsResponse]
|
1105
|
+
#
|
1106
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1107
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1108
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1109
|
+
def search_variants(search_variants_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
1110
|
+
command = make_simple_command(:post, 'v1/variants/search', options)
|
1111
|
+
command.request_representation = Google::Apis::GenomicsV1::SearchVariantsRequest::Representation
|
1112
|
+
command.request_object = search_variants_request_object
|
1113
|
+
command.response_representation = Google::Apis::GenomicsV1::SearchVariantsResponse::Representation
|
1114
|
+
command.response_class = Google::Apis::GenomicsV1::SearchVariantsResponse
|
1115
|
+
command.query['fields'] = fields unless fields.nil?
|
1116
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1117
|
+
execute_or_queue_command(command, &block)
|
1118
|
+
end
|
1119
|
+
|
1120
|
+
# Creates a new variant. For the definitions of variants and other genomics
|
1121
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
1122
|
+
# genomics/fundamentals-of-google-genomics)
|
1123
|
+
# @param [Google::Apis::GenomicsV1::Variant] variant_object
|
1124
|
+
# @param [String] fields
|
1125
|
+
# Selector specifying which fields to include in a partial response.
|
1126
|
+
# @param [String] quota_user
|
1127
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1128
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1129
|
+
# @param [Google::Apis::RequestOptions] options
|
1130
|
+
# Request-specific options
|
1131
|
+
#
|
1132
|
+
# @yield [result, err] Result & error if block supplied
|
1133
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Variant] parsed result object
|
1134
|
+
# @yieldparam err [StandardError] error object if request failed
|
1135
|
+
#
|
1136
|
+
# @return [Google::Apis::GenomicsV1::Variant]
|
1137
|
+
#
|
1138
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1139
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1140
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1141
|
+
def create_variant(variant_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
1142
|
+
command = make_simple_command(:post, 'v1/variants', options)
|
1143
|
+
command.request_representation = Google::Apis::GenomicsV1::Variant::Representation
|
1144
|
+
command.request_object = variant_object
|
1145
|
+
command.response_representation = Google::Apis::GenomicsV1::Variant::Representation
|
1146
|
+
command.response_class = Google::Apis::GenomicsV1::Variant
|
1147
|
+
command.query['fields'] = fields unless fields.nil?
|
1148
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1149
|
+
execute_or_queue_command(command, &block)
|
1150
|
+
end
|
1151
|
+
|
1152
|
+
# Updates a variant. For the definitions of variants and other genomics
|
1153
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
1154
|
+
# genomics/fundamentals-of-google-genomics) This method supports patch semantics.
|
1155
|
+
# Returns the modified variant without its calls.
|
1156
|
+
# @param [String] variant_id
|
1157
|
+
# The ID of the variant to be updated.
|
1158
|
+
# @param [Google::Apis::GenomicsV1::Variant] variant_object
|
1159
|
+
# @param [String] update_mask
|
1160
|
+
# An optional mask specifying which fields to update. At this time, mutable
|
1161
|
+
# fields are names and info. Acceptable values are "names" and "info". If
|
1162
|
+
# unspecified, all mutable fields will be updated.
|
1163
|
+
# @param [String] fields
|
1164
|
+
# Selector specifying which fields to include in a partial response.
|
1165
|
+
# @param [String] quota_user
|
1166
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1167
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1168
|
+
# @param [Google::Apis::RequestOptions] options
|
1169
|
+
# Request-specific options
|
1170
|
+
#
|
1171
|
+
# @yield [result, err] Result & error if block supplied
|
1172
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Variant] parsed result object
|
1173
|
+
# @yieldparam err [StandardError] error object if request failed
|
1174
|
+
#
|
1175
|
+
# @return [Google::Apis::GenomicsV1::Variant]
|
1176
|
+
#
|
1177
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1178
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1179
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1180
|
+
def patch_variant(variant_id, variant_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block)
|
1181
|
+
command = make_simple_command(:patch, 'v1/variants/{variantId}', options)
|
1182
|
+
command.request_representation = Google::Apis::GenomicsV1::Variant::Representation
|
1183
|
+
command.request_object = variant_object
|
1184
|
+
command.response_representation = Google::Apis::GenomicsV1::Variant::Representation
|
1185
|
+
command.response_class = Google::Apis::GenomicsV1::Variant
|
1186
|
+
command.params['variantId'] = variant_id unless variant_id.nil?
|
1187
|
+
command.query['updateMask'] = update_mask unless update_mask.nil?
|
1188
|
+
command.query['fields'] = fields unless fields.nil?
|
1189
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1190
|
+
execute_or_queue_command(command, &block)
|
1191
|
+
end
|
1192
|
+
|
1193
|
+
# Deletes a variant. For the definitions of variants and other genomics
|
1194
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
1195
|
+
# genomics/fundamentals-of-google-genomics)
|
1196
|
+
# @param [String] variant_id
|
1197
|
+
# The ID of the variant to be deleted.
|
1198
|
+
# @param [String] fields
|
1199
|
+
# Selector specifying which fields to include in a partial response.
|
1200
|
+
# @param [String] quota_user
|
1201
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1202
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1203
|
+
# @param [Google::Apis::RequestOptions] options
|
1204
|
+
# Request-specific options
|
1205
|
+
#
|
1206
|
+
# @yield [result, err] Result & error if block supplied
|
1207
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
|
1208
|
+
# @yieldparam err [StandardError] error object if request failed
|
1209
|
+
#
|
1210
|
+
# @return [Google::Apis::GenomicsV1::Empty]
|
1211
|
+
#
|
1212
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1213
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1214
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1215
|
+
def delete_variant(variant_id, fields: nil, quota_user: nil, options: nil, &block)
|
1216
|
+
command = make_simple_command(:delete, 'v1/variants/{variantId}', options)
|
1217
|
+
command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
|
1218
|
+
command.response_class = Google::Apis::GenomicsV1::Empty
|
1219
|
+
command.params['variantId'] = variant_id unless variant_id.nil?
|
1220
|
+
command.query['fields'] = fields unless fields.nil?
|
1221
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1222
|
+
execute_or_queue_command(command, &block)
|
1223
|
+
end
|
1224
|
+
|
1225
|
+
# Gets a variant by ID. For the definitions of variants and other genomics
|
1226
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
1227
|
+
# genomics/fundamentals-of-google-genomics)
|
1228
|
+
# @param [String] variant_id
|
1229
|
+
# The ID of the variant.
|
1230
|
+
# @param [String] fields
|
1231
|
+
# Selector specifying which fields to include in a partial response.
|
1232
|
+
# @param [String] quota_user
|
1233
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1234
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1235
|
+
# @param [Google::Apis::RequestOptions] options
|
1236
|
+
# Request-specific options
|
1237
|
+
#
|
1238
|
+
# @yield [result, err] Result & error if block supplied
|
1239
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Variant] parsed result object
|
1240
|
+
# @yieldparam err [StandardError] error object if request failed
|
1241
|
+
#
|
1242
|
+
# @return [Google::Apis::GenomicsV1::Variant]
|
1243
|
+
#
|
1244
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1245
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1246
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1247
|
+
def get_variant(variant_id, fields: nil, quota_user: nil, options: nil, &block)
|
1248
|
+
command = make_simple_command(:get, 'v1/variants/{variantId}', options)
|
1249
|
+
command.response_representation = Google::Apis::GenomicsV1::Variant::Representation
|
1250
|
+
command.response_class = Google::Apis::GenomicsV1::Variant
|
1251
|
+
command.params['variantId'] = variant_id unless variant_id.nil?
|
1252
|
+
command.query['fields'] = fields unless fields.nil?
|
1253
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1254
|
+
execute_or_queue_command(command, &block)
|
1255
|
+
end
|
1256
|
+
|
1257
|
+
# Returns a stream of all the variants matching the search request, ordered by
|
1258
|
+
# reference name, position, and ID.
|
1259
|
+
# @param [Google::Apis::GenomicsV1::StreamVariantsRequest] stream_variants_request_object
|
1260
|
+
# @param [String] fields
|
1261
|
+
# Selector specifying which fields to include in a partial response.
|
1262
|
+
# @param [String] quota_user
|
1263
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1264
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1265
|
+
# @param [Google::Apis::RequestOptions] options
|
1266
|
+
# Request-specific options
|
1267
|
+
#
|
1268
|
+
# @yield [result, err] Result & error if block supplied
|
1269
|
+
# @yieldparam result [Google::Apis::GenomicsV1::StreamVariantsResponse] parsed result object
|
1270
|
+
# @yieldparam err [StandardError] error object if request failed
|
1271
|
+
#
|
1272
|
+
# @return [Google::Apis::GenomicsV1::StreamVariantsResponse]
|
1273
|
+
#
|
1274
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1275
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1276
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1277
|
+
def stream_variants(stream_variants_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
1278
|
+
command = make_simple_command(:post, 'v1/variants:stream', options)
|
1279
|
+
command.request_representation = Google::Apis::GenomicsV1::StreamVariantsRequest::Representation
|
1280
|
+
command.request_object = stream_variants_request_object
|
1281
|
+
command.response_representation = Google::Apis::GenomicsV1::StreamVariantsResponse::Representation
|
1282
|
+
command.response_class = Google::Apis::GenomicsV1::StreamVariantsResponse
|
1283
|
+
command.query['fields'] = fields unless fields.nil?
|
1284
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1285
|
+
execute_or_queue_command(command, &block)
|
1286
|
+
end
|
1287
|
+
|
1288
|
+
# Creates a new variant set. For the definitions of variant sets and other
|
1289
|
+
# genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
|
1290
|
+
# com/genomics/fundamentals-of-google-genomics) The provided variant set must
|
1291
|
+
# have a valid `datasetId` set - all other fields are optional. Note that the `
|
1292
|
+
# id` field will be ignored, as this is assigned by the server.
|
1293
|
+
# @param [Google::Apis::GenomicsV1::VariantSet] variant_set_object
|
1294
|
+
# @param [String] fields
|
1295
|
+
# Selector specifying which fields to include in a partial response.
|
1296
|
+
# @param [String] quota_user
|
1297
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1298
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1299
|
+
# @param [Google::Apis::RequestOptions] options
|
1300
|
+
# Request-specific options
|
1301
|
+
#
|
1302
|
+
# @yield [result, err] Result & error if block supplied
|
1303
|
+
# @yieldparam result [Google::Apis::GenomicsV1::VariantSet] parsed result object
|
1304
|
+
# @yieldparam err [StandardError] error object if request failed
|
1305
|
+
#
|
1306
|
+
# @return [Google::Apis::GenomicsV1::VariantSet]
|
1307
|
+
#
|
1308
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1309
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1310
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1311
|
+
def create_variantset(variant_set_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
1312
|
+
command = make_simple_command(:post, 'v1/variantsets', options)
|
1313
|
+
command.request_representation = Google::Apis::GenomicsV1::VariantSet::Representation
|
1314
|
+
command.request_object = variant_set_object
|
1315
|
+
command.response_representation = Google::Apis::GenomicsV1::VariantSet::Representation
|
1316
|
+
command.response_class = Google::Apis::GenomicsV1::VariantSet
|
1317
|
+
command.query['fields'] = fields unless fields.nil?
|
1318
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1319
|
+
execute_or_queue_command(command, &block)
|
1320
|
+
end
|
1321
|
+
|
1322
|
+
# Exports variant set data to an external destination. For the definitions of
|
1323
|
+
# variant sets and other genomics resources, see [Fundamentals of Google
|
1324
|
+
# Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
1325
|
+
# @param [String] variant_set_id
|
1326
|
+
# Required. The ID of the variant set that contains variant data which should be
|
1327
|
+
# exported. The caller must have READ access to this variant set.
|
1328
|
+
# @param [Google::Apis::GenomicsV1::ExportVariantSetRequest] export_variant_set_request_object
|
1329
|
+
# @param [String] fields
|
1330
|
+
# Selector specifying which fields to include in a partial response.
|
1331
|
+
# @param [String] quota_user
|
1332
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1333
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1334
|
+
# @param [Google::Apis::RequestOptions] options
|
1335
|
+
# Request-specific options
|
1336
|
+
#
|
1337
|
+
# @yield [result, err] Result & error if block supplied
|
1338
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Operation] parsed result object
|
1339
|
+
# @yieldparam err [StandardError] error object if request failed
|
1340
|
+
#
|
1341
|
+
# @return [Google::Apis::GenomicsV1::Operation]
|
1342
|
+
#
|
1343
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1344
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1345
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1346
|
+
def export_variant_set(variant_set_id, export_variant_set_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
1347
|
+
command = make_simple_command(:post, 'v1/variantsets/{variantSetId}:export', options)
|
1348
|
+
command.request_representation = Google::Apis::GenomicsV1::ExportVariantSetRequest::Representation
|
1349
|
+
command.request_object = export_variant_set_request_object
|
1350
|
+
command.response_representation = Google::Apis::GenomicsV1::Operation::Representation
|
1351
|
+
command.response_class = Google::Apis::GenomicsV1::Operation
|
1352
|
+
command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
|
1353
|
+
command.query['fields'] = fields unless fields.nil?
|
1354
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1355
|
+
execute_or_queue_command(command, &block)
|
1356
|
+
end
|
1357
|
+
|
1358
|
+
# Gets a variant set by ID. For the definitions of variant sets and other
|
1359
|
+
# genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.
|
1360
|
+
# com/genomics/fundamentals-of-google-genomics)
|
1361
|
+
# @param [String] variant_set_id
|
1362
|
+
# Required. The ID of the variant set.
|
1363
|
+
# @param [String] fields
|
1364
|
+
# Selector specifying which fields to include in a partial response.
|
1365
|
+
# @param [String] quota_user
|
1366
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1367
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1368
|
+
# @param [Google::Apis::RequestOptions] options
|
1369
|
+
# Request-specific options
|
1370
|
+
#
|
1371
|
+
# @yield [result, err] Result & error if block supplied
|
1372
|
+
# @yieldparam result [Google::Apis::GenomicsV1::VariantSet] parsed result object
|
1373
|
+
# @yieldparam err [StandardError] error object if request failed
|
1374
|
+
#
|
1375
|
+
# @return [Google::Apis::GenomicsV1::VariantSet]
|
1376
|
+
#
|
1377
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1378
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1379
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1380
|
+
def get_variantset(variant_set_id, fields: nil, quota_user: nil, options: nil, &block)
|
1381
|
+
command = make_simple_command(:get, 'v1/variantsets/{variantSetId}', options)
|
1382
|
+
command.response_representation = Google::Apis::GenomicsV1::VariantSet::Representation
|
1383
|
+
command.response_class = Google::Apis::GenomicsV1::VariantSet
|
1384
|
+
command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
|
1385
|
+
command.query['fields'] = fields unless fields.nil?
|
1386
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1387
|
+
execute_or_queue_command(command, &block)
|
1388
|
+
end
|
1389
|
+
|
1390
|
+
# Returns a list of all variant sets matching search criteria. For the
|
1391
|
+
# definitions of variant sets and other genomics resources, see [Fundamentals of
|
1392
|
+
# Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
|
1393
|
+
# genomics) Implements [GlobalAllianceApi.searchVariantSets](https://github.com/
|
1394
|
+
# ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L49).
|
1395
|
+
# @param [Google::Apis::GenomicsV1::SearchVariantSetsRequest] search_variant_sets_request_object
|
1396
|
+
# @param [String] fields
|
1397
|
+
# Selector specifying which fields to include in a partial response.
|
1398
|
+
# @param [String] quota_user
|
1399
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1400
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1401
|
+
# @param [Google::Apis::RequestOptions] options
|
1402
|
+
# Request-specific options
|
1403
|
+
#
|
1404
|
+
# @yield [result, err] Result & error if block supplied
|
1405
|
+
# @yieldparam result [Google::Apis::GenomicsV1::SearchVariantSetsResponse] parsed result object
|
1406
|
+
# @yieldparam err [StandardError] error object if request failed
|
1407
|
+
#
|
1408
|
+
# @return [Google::Apis::GenomicsV1::SearchVariantSetsResponse]
|
1409
|
+
#
|
1410
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1411
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1412
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1413
|
+
def search_variant_sets(search_variant_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
1414
|
+
command = make_simple_command(:post, 'v1/variantsets/search', options)
|
1415
|
+
command.request_representation = Google::Apis::GenomicsV1::SearchVariantSetsRequest::Representation
|
1416
|
+
command.request_object = search_variant_sets_request_object
|
1417
|
+
command.response_representation = Google::Apis::GenomicsV1::SearchVariantSetsResponse::Representation
|
1418
|
+
command.response_class = Google::Apis::GenomicsV1::SearchVariantSetsResponse
|
1419
|
+
command.query['fields'] = fields unless fields.nil?
|
1420
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1421
|
+
execute_or_queue_command(command, &block)
|
1422
|
+
end
|
1423
|
+
|
1424
|
+
# Deletes the contents of a variant set. The variant set object is not deleted.
|
1425
|
+
# For the definitions of variant sets and other genomics resources, see [
|
1426
|
+
# Fundamentals of Google Genomics](https://cloud.google.com/genomics/
|
1427
|
+
# fundamentals-of-google-genomics)
|
1428
|
+
# @param [String] variant_set_id
|
1429
|
+
# The ID of the variant set to be deleted.
|
1430
|
+
# @param [String] fields
|
1431
|
+
# Selector specifying which fields to include in a partial response.
|
1432
|
+
# @param [String] quota_user
|
1433
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1434
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1435
|
+
# @param [Google::Apis::RequestOptions] options
|
1436
|
+
# Request-specific options
|
1437
|
+
#
|
1438
|
+
# @yield [result, err] Result & error if block supplied
|
1439
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
|
1440
|
+
# @yieldparam err [StandardError] error object if request failed
|
1441
|
+
#
|
1442
|
+
# @return [Google::Apis::GenomicsV1::Empty]
|
1443
|
+
#
|
1444
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1445
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1446
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1447
|
+
def delete_variantset(variant_set_id, fields: nil, quota_user: nil, options: nil, &block)
|
1448
|
+
command = make_simple_command(:delete, 'v1/variantsets/{variantSetId}', options)
|
1449
|
+
command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
|
1450
|
+
command.response_class = Google::Apis::GenomicsV1::Empty
|
1451
|
+
command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
|
1452
|
+
command.query['fields'] = fields unless fields.nil?
|
1453
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1454
|
+
execute_or_queue_command(command, &block)
|
1455
|
+
end
|
1456
|
+
|
1457
|
+
# Updates a variant set using patch semantics. For the definitions of variant
|
1458
|
+
# sets and other genomics resources, see [Fundamentals of Google Genomics](https:
|
1459
|
+
# //cloud.google.com/genomics/fundamentals-of-google-genomics)
|
1460
|
+
# @param [String] variant_set_id
|
1461
|
+
# The ID of the variant to be updated (must already exist).
|
1462
|
+
# @param [Google::Apis::GenomicsV1::VariantSet] variant_set_object
|
1463
|
+
# @param [String] update_mask
|
1464
|
+
# An optional mask specifying which fields to update. Supported fields: *
|
1465
|
+
# metadata. Leaving `updateMask` unset is equivalent to specifying all mutable
|
1466
|
+
# fields.
|
1467
|
+
# @param [String] fields
|
1468
|
+
# Selector specifying which fields to include in a partial response.
|
1469
|
+
# @param [String] quota_user
|
1470
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1471
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1472
|
+
# @param [Google::Apis::RequestOptions] options
|
1473
|
+
# Request-specific options
|
1474
|
+
#
|
1475
|
+
# @yield [result, err] Result & error if block supplied
|
1476
|
+
# @yieldparam result [Google::Apis::GenomicsV1::VariantSet] parsed result object
|
1477
|
+
# @yieldparam err [StandardError] error object if request failed
|
1478
|
+
#
|
1479
|
+
# @return [Google::Apis::GenomicsV1::VariantSet]
|
1480
|
+
#
|
1481
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1482
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1483
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1484
|
+
def patch_variantset(variant_set_id, variant_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block)
|
1485
|
+
command = make_simple_command(:patch, 'v1/variantsets/{variantSetId}', options)
|
1486
|
+
command.request_representation = Google::Apis::GenomicsV1::VariantSet::Representation
|
1487
|
+
command.request_object = variant_set_object
|
1488
|
+
command.response_representation = Google::Apis::GenomicsV1::VariantSet::Representation
|
1489
|
+
command.response_class = Google::Apis::GenomicsV1::VariantSet
|
1490
|
+
command.params['variantSetId'] = variant_set_id unless variant_set_id.nil?
|
1491
|
+
command.query['updateMask'] = update_mask unless update_mask.nil?
|
1492
|
+
command.query['fields'] = fields unless fields.nil?
|
1493
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1494
|
+
execute_or_queue_command(command, &block)
|
1495
|
+
end
|
1496
|
+
|
1497
|
+
# Gets a list of call sets matching the criteria. For the definitions of call
|
1498
|
+
# sets and other genomics resources, see [Fundamentals of Google Genomics](https:
|
1499
|
+
# //cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [
|
1500
|
+
# GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/
|
1501
|
+
# src/main/resources/avro/variantmethods.avdl#L178).
|
1502
|
+
# @param [Google::Apis::GenomicsV1::SearchCallSetsRequest] search_call_sets_request_object
|
1503
|
+
# @param [String] fields
|
1504
|
+
# Selector specifying which fields to include in a partial response.
|
1505
|
+
# @param [String] quota_user
|
1506
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1507
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1508
|
+
# @param [Google::Apis::RequestOptions] options
|
1509
|
+
# Request-specific options
|
1510
|
+
#
|
1511
|
+
# @yield [result, err] Result & error if block supplied
|
1512
|
+
# @yieldparam result [Google::Apis::GenomicsV1::SearchCallSetsResponse] parsed result object
|
1513
|
+
# @yieldparam err [StandardError] error object if request failed
|
1514
|
+
#
|
1515
|
+
# @return [Google::Apis::GenomicsV1::SearchCallSetsResponse]
|
1516
|
+
#
|
1517
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1518
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1519
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1520
|
+
def search_call_sets(search_call_sets_request_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
1521
|
+
command = make_simple_command(:post, 'v1/callsets/search', options)
|
1522
|
+
command.request_representation = Google::Apis::GenomicsV1::SearchCallSetsRequest::Representation
|
1523
|
+
command.request_object = search_call_sets_request_object
|
1524
|
+
command.response_representation = Google::Apis::GenomicsV1::SearchCallSetsResponse::Representation
|
1525
|
+
command.response_class = Google::Apis::GenomicsV1::SearchCallSetsResponse
|
1526
|
+
command.query['fields'] = fields unless fields.nil?
|
1527
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1528
|
+
execute_or_queue_command(command, &block)
|
1529
|
+
end
|
1530
|
+
|
1531
|
+
# Creates a new call set. For the definitions of call sets and other genomics
|
1532
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
1533
|
+
# genomics/fundamentals-of-google-genomics)
|
1534
|
+
# @param [Google::Apis::GenomicsV1::CallSet] call_set_object
|
1535
|
+
# @param [String] fields
|
1536
|
+
# Selector specifying which fields to include in a partial response.
|
1537
|
+
# @param [String] quota_user
|
1538
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1539
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1540
|
+
# @param [Google::Apis::RequestOptions] options
|
1541
|
+
# Request-specific options
|
1542
|
+
#
|
1543
|
+
# @yield [result, err] Result & error if block supplied
|
1544
|
+
# @yieldparam result [Google::Apis::GenomicsV1::CallSet] parsed result object
|
1545
|
+
# @yieldparam err [StandardError] error object if request failed
|
1546
|
+
#
|
1547
|
+
# @return [Google::Apis::GenomicsV1::CallSet]
|
1548
|
+
#
|
1549
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1550
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1551
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1552
|
+
def create_call_set(call_set_object = nil, fields: nil, quota_user: nil, options: nil, &block)
|
1553
|
+
command = make_simple_command(:post, 'v1/callsets', options)
|
1554
|
+
command.request_representation = Google::Apis::GenomicsV1::CallSet::Representation
|
1555
|
+
command.request_object = call_set_object
|
1556
|
+
command.response_representation = Google::Apis::GenomicsV1::CallSet::Representation
|
1557
|
+
command.response_class = Google::Apis::GenomicsV1::CallSet
|
1558
|
+
command.query['fields'] = fields unless fields.nil?
|
1559
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1560
|
+
execute_or_queue_command(command, &block)
|
1561
|
+
end
|
1562
|
+
|
1563
|
+
# Updates a call set. For the definitions of call sets and other genomics
|
1564
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
1565
|
+
# genomics/fundamentals-of-google-genomics) This method supports patch semantics.
|
1566
|
+
# @param [String] call_set_id
|
1567
|
+
# The ID of the call set to be updated.
|
1568
|
+
# @param [Google::Apis::GenomicsV1::CallSet] call_set_object
|
1569
|
+
# @param [String] update_mask
|
1570
|
+
# An optional mask specifying which fields to update. At this time, the only
|
1571
|
+
# mutable field is name. The only acceptable value is "name". If unspecified,
|
1572
|
+
# all mutable fields will be updated.
|
1573
|
+
# @param [String] fields
|
1574
|
+
# Selector specifying which fields to include in a partial response.
|
1575
|
+
# @param [String] quota_user
|
1576
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1577
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1578
|
+
# @param [Google::Apis::RequestOptions] options
|
1579
|
+
# Request-specific options
|
1580
|
+
#
|
1581
|
+
# @yield [result, err] Result & error if block supplied
|
1582
|
+
# @yieldparam result [Google::Apis::GenomicsV1::CallSet] parsed result object
|
1583
|
+
# @yieldparam err [StandardError] error object if request failed
|
1584
|
+
#
|
1585
|
+
# @return [Google::Apis::GenomicsV1::CallSet]
|
1586
|
+
#
|
1587
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1588
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1589
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1590
|
+
def patch_call_set(call_set_id, call_set_object = nil, update_mask: nil, fields: nil, quota_user: nil, options: nil, &block)
|
1591
|
+
command = make_simple_command(:patch, 'v1/callsets/{callSetId}', options)
|
1592
|
+
command.request_representation = Google::Apis::GenomicsV1::CallSet::Representation
|
1593
|
+
command.request_object = call_set_object
|
1594
|
+
command.response_representation = Google::Apis::GenomicsV1::CallSet::Representation
|
1595
|
+
command.response_class = Google::Apis::GenomicsV1::CallSet
|
1596
|
+
command.params['callSetId'] = call_set_id unless call_set_id.nil?
|
1597
|
+
command.query['updateMask'] = update_mask unless update_mask.nil?
|
1598
|
+
command.query['fields'] = fields unless fields.nil?
|
1599
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1600
|
+
execute_or_queue_command(command, &block)
|
1601
|
+
end
|
1602
|
+
|
1603
|
+
# Deletes a call set. For the definitions of call sets and other genomics
|
1604
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
1605
|
+
# genomics/fundamentals-of-google-genomics)
|
1606
|
+
# @param [String] call_set_id
|
1607
|
+
# The ID of the call set to be deleted.
|
1608
|
+
# @param [String] fields
|
1609
|
+
# Selector specifying which fields to include in a partial response.
|
1610
|
+
# @param [String] quota_user
|
1611
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1612
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1613
|
+
# @param [Google::Apis::RequestOptions] options
|
1614
|
+
# Request-specific options
|
1615
|
+
#
|
1616
|
+
# @yield [result, err] Result & error if block supplied
|
1617
|
+
# @yieldparam result [Google::Apis::GenomicsV1::Empty] parsed result object
|
1618
|
+
# @yieldparam err [StandardError] error object if request failed
|
1619
|
+
#
|
1620
|
+
# @return [Google::Apis::GenomicsV1::Empty]
|
1621
|
+
#
|
1622
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1623
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1624
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1625
|
+
def delete_call_set(call_set_id, fields: nil, quota_user: nil, options: nil, &block)
|
1626
|
+
command = make_simple_command(:delete, 'v1/callsets/{callSetId}', options)
|
1627
|
+
command.response_representation = Google::Apis::GenomicsV1::Empty::Representation
|
1628
|
+
command.response_class = Google::Apis::GenomicsV1::Empty
|
1629
|
+
command.params['callSetId'] = call_set_id unless call_set_id.nil?
|
1630
|
+
command.query['fields'] = fields unless fields.nil?
|
1631
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1632
|
+
execute_or_queue_command(command, &block)
|
1633
|
+
end
|
1634
|
+
|
1635
|
+
# Gets a call set by ID. For the definitions of call sets and other genomics
|
1636
|
+
# resources, see [Fundamentals of Google Genomics](https://cloud.google.com/
|
1637
|
+
# genomics/fundamentals-of-google-genomics)
|
1638
|
+
# @param [String] call_set_id
|
1639
|
+
# The ID of the call set.
|
1640
|
+
# @param [String] fields
|
1641
|
+
# Selector specifying which fields to include in a partial response.
|
1642
|
+
# @param [String] quota_user
|
1643
|
+
# Available to use for quota purposes for server-side applications. Can be any
|
1644
|
+
# arbitrary string assigned to a user, but should not exceed 40 characters.
|
1645
|
+
# @param [Google::Apis::RequestOptions] options
|
1646
|
+
# Request-specific options
|
1647
|
+
#
|
1648
|
+
# @yield [result, err] Result & error if block supplied
|
1649
|
+
# @yieldparam result [Google::Apis::GenomicsV1::CallSet] parsed result object
|
1650
|
+
# @yieldparam err [StandardError] error object if request failed
|
1651
|
+
#
|
1652
|
+
# @return [Google::Apis::GenomicsV1::CallSet]
|
1653
|
+
#
|
1654
|
+
# @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
|
1655
|
+
# @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
|
1656
|
+
# @raise [Google::Apis::AuthorizationError] Authorization is required
|
1657
|
+
def get_call_set(call_set_id, fields: nil, quota_user: nil, options: nil, &block)
|
1658
|
+
command = make_simple_command(:get, 'v1/callsets/{callSetId}', options)
|
1659
|
+
command.response_representation = Google::Apis::GenomicsV1::CallSet::Representation
|
1660
|
+
command.response_class = Google::Apis::GenomicsV1::CallSet
|
1661
|
+
command.params['callSetId'] = call_set_id unless call_set_id.nil?
|
1662
|
+
command.query['fields'] = fields unless fields.nil?
|
1663
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1664
|
+
execute_or_queue_command(command, &block)
|
1665
|
+
end
|
1666
|
+
|
1667
|
+
protected
|
1668
|
+
|
1669
|
+
def apply_command_defaults(command)
|
1670
|
+
command.query['key'] = key unless key.nil?
|
1671
|
+
command.query['quotaUser'] = quota_user unless quota_user.nil?
|
1672
|
+
end
|
1673
|
+
end
|
1674
|
+
end
|
1675
|
+
end
|
1676
|
+
end
|