google-api-client 0.8.3 → 0.9

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Files changed (497) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +20 -0
  3. data/.rspec +2 -0
  4. data/.rubocop.yml +7 -0
  5. data/.rubocop_todo.yml +63 -0
  6. data/.travis.yml +22 -0
  7. data/.yardopts +12 -0
  8. data/CHANGELOG.md +52 -2
  9. data/CONTRIBUTING.md +31 -0
  10. data/Gemfile +35 -1
  11. data/MIGRATING.md +171 -0
  12. data/README.md +181 -148
  13. data/Rakefile +1 -40
  14. data/api_names.yaml +1036 -0
  15. data/api_names_out.yaml +26053 -0
  16. data/bin/generate-api +95 -0
  17. data/generated/google/apis/adexchangebuyer_v1_3/classes.rb +1335 -0
  18. data/generated/google/apis/adexchangebuyer_v1_3/representations.rb +446 -0
  19. data/generated/google/apis/adexchangebuyer_v1_3/service.rb +872 -0
  20. data/generated/google/apis/adexchangebuyer_v1_3.rb +35 -0
  21. data/generated/google/apis/adexchangeseller_v2_0/classes.rb +792 -0
  22. data/generated/google/apis/adexchangeseller_v2_0/representations.rb +309 -0
  23. data/generated/google/apis/adexchangeseller_v2_0/service.rb +668 -0
  24. data/generated/google/apis/adexchangeseller_v2_0.rb +38 -0
  25. data/generated/google/apis/admin_datatransfer_v1/classes.rb +267 -0
  26. data/generated/google/apis/admin_datatransfer_v1/representations.rb +118 -0
  27. data/generated/google/apis/admin_datatransfer_v1/service.rb +262 -0
  28. data/generated/google/apis/admin_datatransfer_v1.rb +37 -0
  29. data/generated/google/apis/admin_directory_v1/classes.rb +3141 -0
  30. data/generated/google/apis/admin_directory_v1/representations.rb +1029 -0
  31. data/generated/google/apis/admin_directory_v1/service.rb +3818 -0
  32. data/generated/google/apis/admin_directory_v1.rb +113 -0
  33. data/generated/google/apis/admin_reports_v1/classes.rb +582 -0
  34. data/generated/google/apis/admin_reports_v1/representations.rb +231 -0
  35. data/generated/google/apis/admin_reports_v1/service.rb +336 -0
  36. data/generated/google/apis/admin_reports_v1.rb +38 -0
  37. data/generated/google/apis/adsense_v1_4/classes.rb +1285 -0
  38. data/generated/google/apis/adsense_v1_4/representations.rb +494 -0
  39. data/generated/google/apis/adsense_v1_4/service.rb +1714 -0
  40. data/generated/google/apis/adsense_v1_4.rb +38 -0
  41. data/generated/google/apis/adsensehost_v4_1/classes.rb +834 -0
  42. data/generated/google/apis/adsensehost_v4_1/representations.rb +327 -0
  43. data/generated/google/apis/adsensehost_v4_1/service.rb +1164 -0
  44. data/generated/google/apis/adsensehost_v4_1.rb +35 -0
  45. data/generated/google/apis/analytics_v3/classes.rb +5118 -0
  46. data/generated/google/apis/analytics_v3/representations.rb +1662 -0
  47. data/generated/google/apis/analytics_v3/service.rb +3568 -0
  48. data/generated/google/apis/analytics_v3.rb +49 -0
  49. data/generated/google/apis/androidenterprise_v1/classes.rb +1443 -0
  50. data/generated/google/apis/androidenterprise_v1/representations.rb +538 -0
  51. data/generated/google/apis/androidenterprise_v1/service.rb +2602 -0
  52. data/generated/google/apis/androidenterprise_v1.rb +35 -0
  53. data/generated/google/apis/androidpublisher_v2/classes.rb +1411 -0
  54. data/generated/google/apis/androidpublisher_v2/representations.rb +646 -0
  55. data/generated/google/apis/androidpublisher_v2/service.rb +2338 -0
  56. data/generated/google/apis/androidpublisher_v2.rb +34 -0
  57. data/generated/google/apis/appengine_v1beta4/classes.rb +1532 -0
  58. data/generated/google/apis/appengine_v1beta4/representations.rb +526 -0
  59. data/generated/google/apis/appengine_v1beta4/service.rb +476 -0
  60. data/generated/google/apis/appengine_v1beta4.rb +35 -0
  61. data/generated/google/apis/appsactivity_v1/classes.rb +392 -0
  62. data/generated/google/apis/appsactivity_v1/representations.rb +184 -0
  63. data/generated/google/apis/appsactivity_v1/service.rb +128 -0
  64. data/generated/google/apis/appsactivity_v1.rb +46 -0
  65. data/generated/google/apis/appstate_v1/classes.rb +154 -0
  66. data/generated/google/apis/appstate_v1/representations.rb +79 -0
  67. data/generated/google/apis/appstate_v1/service.rb +260 -0
  68. data/generated/google/apis/appstate_v1.rb +34 -0
  69. data/generated/google/apis/autoscaler_v1beta2/classes.rb +747 -0
  70. data/generated/google/apis/autoscaler_v1beta2/representations.rb +281 -0
  71. data/generated/google/apis/autoscaler_v1beta2/service.rb +478 -0
  72. data/generated/google/apis/autoscaler_v1beta2.rb +38 -0
  73. data/generated/google/apis/bigquery_v2/classes.rb +2471 -0
  74. data/generated/google/apis/bigquery_v2/representations.rb +816 -0
  75. data/generated/google/apis/bigquery_v2/service.rb +982 -0
  76. data/generated/google/apis/bigquery_v2.rb +52 -0
  77. data/generated/google/apis/blogger_v3/classes.rb +1354 -0
  78. data/generated/google/apis/blogger_v3/representations.rb +562 -0
  79. data/generated/google/apis/blogger_v3/service.rb +1587 -0
  80. data/generated/google/apis/blogger_v3.rb +37 -0
  81. data/generated/google/apis/books_v1/classes.rb +3956 -0
  82. data/generated/google/apis/books_v1/representations.rb +1538 -0
  83. data/generated/google/apis/books_v1/service.rb +2290 -0
  84. data/generated/google/apis/books_v1.rb +34 -0
  85. data/generated/google/apis/calendar_v3/classes.rb +1742 -0
  86. data/generated/google/apis/calendar_v3/representations.rb +567 -0
  87. data/generated/google/apis/calendar_v3/service.rb +1968 -0
  88. data/generated/google/apis/calendar_v3.rb +37 -0
  89. data/generated/google/apis/civicinfo_v2/classes.rb +1127 -0
  90. data/generated/google/apis/civicinfo_v2/representations.rb +383 -0
  91. data/generated/google/apis/civicinfo_v2/service.rb +279 -0
  92. data/{lib/google/api_client/service_account.rb → generated/google/apis/civicinfo_v2.rb} +18 -8
  93. data/generated/google/apis/classroom_v1/classes.rb +512 -0
  94. data/generated/google/apis/classroom_v1/representations.rb +217 -0
  95. data/generated/google/apis/classroom_v1/service.rb +970 -0
  96. data/generated/google/apis/classroom_v1.rb +49 -0
  97. data/generated/google/apis/classroom_v1beta1/classes.rb +447 -0
  98. data/generated/google/apis/classroom_v1beta1/representations.rb +190 -0
  99. data/generated/google/apis/classroom_v1beta1/service.rb +791 -0
  100. data/generated/google/apis/classroom_v1beta1.rb +49 -0
  101. data/generated/google/apis/cloudbilling_v1/classes.rb +169 -0
  102. data/generated/google/apis/cloudbilling_v1/representations.rb +79 -0
  103. data/generated/google/apis/cloudbilling_v1/service.rb +258 -0
  104. data/generated/google/apis/cloudbilling_v1.rb +35 -0
  105. data/generated/google/apis/clouddebugger_v2/classes.rb +1004 -0
  106. data/generated/google/apis/clouddebugger_v2/representations.rb +410 -0
  107. data/generated/google/apis/clouddebugger_v2/service.rb +370 -0
  108. data/generated/google/apis/clouddebugger_v2.rb +41 -0
  109. data/generated/google/apis/cloudmonitoring_v2beta2/classes.rb +679 -0
  110. data/generated/google/apis/cloudmonitoring_v2beta2/representations.rb +311 -0
  111. data/generated/google/apis/cloudmonitoring_v2beta2/service.rb +452 -0
  112. data/generated/google/apis/cloudmonitoring_v2beta2.rb +37 -0
  113. data/generated/google/apis/cloudresourcemanager_v1beta1/classes.rb +437 -0
  114. data/generated/google/apis/cloudresourcemanager_v1beta1/representations.rb +188 -0
  115. data/generated/google/apis/cloudresourcemanager_v1beta1/service.rb +623 -0
  116. data/generated/google/apis/cloudresourcemanager_v1beta1.rb +38 -0
  117. data/generated/google/apis/cloudtrace_v1/classes.rb +188 -0
  118. data/generated/google/apis/cloudtrace_v1/representations.rb +92 -0
  119. data/generated/google/apis/cloudtrace_v1/service.rb +190 -0
  120. data/generated/google/apis/cloudtrace_v1.rb +35 -0
  121. data/generated/google/apis/clouduseraccounts_beta/classes.rb +823 -0
  122. data/generated/google/apis/clouduseraccounts_beta/representations.rb +313 -0
  123. data/generated/google/apis/clouduseraccounts_beta/service.rb +854 -0
  124. data/generated/google/apis/clouduseraccounts_beta.rb +43 -0
  125. data/generated/google/apis/compute_beta/classes.rb +9128 -0
  126. data/generated/google/apis/compute_beta/representations.rb +3048 -0
  127. data/generated/google/apis/compute_beta/service.rb +10154 -0
  128. data/generated/google/apis/compute_beta.rb +49 -0
  129. data/generated/google/apis/compute_v1/classes.rb +8681 -0
  130. data/generated/google/apis/compute_v1/representations.rb +2895 -0
  131. data/generated/google/apis/compute_v1/service.rb +9252 -0
  132. data/generated/google/apis/compute_v1.rb +49 -0
  133. data/generated/google/apis/container_v1/classes.rb +463 -0
  134. data/generated/google/apis/container_v1/representations.rb +175 -0
  135. data/generated/google/apis/container_v1/service.rb +367 -0
  136. data/generated/google/apis/container_v1.rb +35 -0
  137. data/generated/google/apis/container_v1beta1/classes.rb +466 -0
  138. data/generated/google/apis/container_v1beta1/representations.rb +177 -0
  139. data/generated/google/apis/container_v1beta1/service.rb +394 -0
  140. data/generated/google/apis/container_v1beta1.rb +35 -0
  141. data/generated/google/apis/content_v2/classes.rb +5986 -0
  142. data/generated/google/apis/content_v2/representations.rb +2288 -0
  143. data/generated/google/apis/content_v2/service.rb +2338 -0
  144. data/generated/google/apis/content_v2.rb +35 -0
  145. data/generated/google/apis/coordinate_v1/classes.rb +669 -0
  146. data/generated/google/apis/coordinate_v1/representations.rb +285 -0
  147. data/generated/google/apis/coordinate_v1/service.rb +678 -0
  148. data/generated/google/apis/coordinate_v1.rb +37 -0
  149. data/generated/google/apis/customsearch_v1/classes.rb +771 -0
  150. data/generated/google/apis/customsearch_v1/representations.rb +276 -0
  151. data/generated/google/apis/customsearch_v1/service.rb +207 -0
  152. data/{lib/google/api_client/auth/compute_service_account.rb → generated/google/apis/customsearch_v1.rb} +13 -10
  153. data/generated/google/apis/datastore_v1beta2/classes.rb +1186 -0
  154. data/generated/google/apis/datastore_v1beta2/representations.rb +526 -0
  155. data/generated/google/apis/datastore_v1beta2/service.rb +294 -0
  156. data/generated/google/apis/datastore_v1beta2.rb +40 -0
  157. data/generated/google/apis/deploymentmanager_v2/classes.rb +1091 -0
  158. data/generated/google/apis/deploymentmanager_v2/representations.rb +422 -0
  159. data/generated/google/apis/deploymentmanager_v2/service.rb +857 -0
  160. data/generated/google/apis/deploymentmanager_v2.rb +44 -0
  161. data/generated/google/apis/deploymentmanager_v2beta2/classes.rb +843 -0
  162. data/generated/google/apis/deploymentmanager_v2beta2/representations.rb +306 -0
  163. data/generated/google/apis/deploymentmanager_v2beta2/service.rb +689 -0
  164. data/generated/google/apis/deploymentmanager_v2beta2.rb +44 -0
  165. data/generated/google/apis/dfareporting_v2_1/classes.rb +10770 -0
  166. data/generated/google/apis/dfareporting_v2_1/representations.rb +3438 -0
  167. data/generated/google/apis/dfareporting_v2_1/service.rb +8585 -0
  168. data/generated/google/apis/dfareporting_v2_1.rb +37 -0
  169. data/generated/google/apis/discovery_v1/classes.rb +961 -0
  170. data/generated/google/apis/discovery_v1/representations.rb +357 -0
  171. data/generated/google/apis/discovery_v1/service.rb +142 -0
  172. data/generated/google/apis/discovery_v1.rb +32 -0
  173. data/generated/google/apis/dns_v1/classes.rb +406 -0
  174. data/generated/google/apis/dns_v1/representations.rb +151 -0
  175. data/generated/google/apis/dns_v1/service.rb +454 -0
  176. data/generated/google/apis/dns_v1.rb +44 -0
  177. data/generated/google/apis/doubleclickbidmanager_v1/classes.rb +716 -0
  178. data/generated/google/apis/doubleclickbidmanager_v1/representations.rb +298 -0
  179. data/generated/google/apis/doubleclickbidmanager_v1/service.rb +341 -0
  180. data/generated/google/apis/doubleclickbidmanager_v1.rb +31 -0
  181. data/generated/google/apis/doubleclicksearch_v2/classes.rb +956 -0
  182. data/generated/google/apis/doubleclicksearch_v2/representations.rb +316 -0
  183. data/generated/google/apis/doubleclicksearch_v2/service.rb +480 -0
  184. data/generated/google/apis/doubleclicksearch_v2.rb +35 -0
  185. data/generated/google/apis/drive_v2/classes.rb +2562 -0
  186. data/generated/google/apis/drive_v2/representations.rb +795 -0
  187. data/generated/google/apis/drive_v2/service.rb +2696 -0
  188. data/generated/google/apis/drive_v2.rb +58 -0
  189. data/generated/google/apis/drive_v3/classes.rb +1534 -0
  190. data/generated/google/apis/drive_v3/representations.rb +497 -0
  191. data/generated/google/apis/drive_v3/service.rb +1541 -0
  192. data/generated/google/apis/drive_v3.rb +55 -0
  193. data/generated/google/apis/fitness_v1/classes.rb +885 -0
  194. data/generated/google/apis/fitness_v1/representations.rb +320 -0
  195. data/generated/google/apis/fitness_v1/service.rb +675 -0
  196. data/generated/google/apis/fitness_v1.rb +49 -0
  197. data/generated/google/apis/fusiontables_v2/classes.rb +1048 -0
  198. data/generated/google/apis/fusiontables_v2/representations.rb +409 -0
  199. data/generated/google/apis/fusiontables_v2/service.rb +1463 -0
  200. data/generated/google/apis/fusiontables_v2.rb +37 -0
  201. data/generated/google/apis/games_configuration_v1configuration/classes.rb +506 -0
  202. data/generated/google/apis/games_configuration_v1configuration/representations.rb +206 -0
  203. data/generated/google/apis/games_configuration_v1configuration/service.rb +565 -0
  204. data/generated/google/apis/games_configuration_v1configuration.rb +34 -0
  205. data/generated/google/apis/games_management_v1management/classes.rb +524 -0
  206. data/generated/google/apis/games_management_v1management/representations.rb +231 -0
  207. data/generated/google/apis/games_management_v1management/service.rb +994 -0
  208. data/generated/google/apis/games_management_v1management.rb +37 -0
  209. data/generated/google/apis/games_v1/classes.rb +4617 -0
  210. data/generated/google/apis/games_v1/representations.rb +1584 -0
  211. data/generated/google/apis/games_v1/service.rb +2290 -0
  212. data/generated/google/apis/games_v1.rb +40 -0
  213. data/generated/google/apis/gan_v1beta1/classes.rb +1428 -0
  214. data/generated/google/apis/gan_v1beta1/representations.rb +428 -0
  215. data/generated/google/apis/gan_v1beta1/service.rb +682 -0
  216. data/generated/google/apis/gan_v1beta1.rb +31 -0
  217. data/generated/google/apis/genomics_v1/classes.rb +2609 -0
  218. data/generated/google/apis/genomics_v1/representations.rb +909 -0
  219. data/generated/google/apis/genomics_v1/service.rb +1676 -0
  220. data/generated/google/apis/genomics_v1.rb +49 -0
  221. data/generated/google/apis/genomics_v1beta2/classes.rb +3288 -0
  222. data/generated/google/apis/genomics_v1beta2/representations.rb +1194 -0
  223. data/generated/google/apis/genomics_v1beta2/service.rb +2392 -0
  224. data/generated/google/apis/genomics_v1beta2.rb +46 -0
  225. data/generated/google/apis/gmail_v1/classes.rb +794 -0
  226. data/generated/google/apis/gmail_v1/representations.rb +339 -0
  227. data/generated/google/apis/gmail_v1/service.rb +1470 -0
  228. data/generated/google/apis/gmail_v1.rb +52 -0
  229. data/generated/google/apis/groupsmigration_v1/classes.rb +51 -0
  230. data/generated/google/apis/groupsmigration_v1/representations.rb +38 -0
  231. data/generated/google/apis/groupsmigration_v1/service.rb +110 -0
  232. data/generated/google/apis/groupsmigration_v1.rb +34 -0
  233. data/generated/google/apis/groupssettings_v1/classes.rb +221 -0
  234. data/generated/google/apis/groupssettings_v1/representations.rb +64 -0
  235. data/generated/google/apis/groupssettings_v1/service.rb +179 -0
  236. data/generated/google/apis/groupssettings_v1.rb +34 -0
  237. data/generated/google/apis/identitytoolkit_v3/classes.rb +1466 -0
  238. data/generated/google/apis/identitytoolkit_v3/representations.rb +509 -0
  239. data/generated/google/apis/identitytoolkit_v3/service.rb +581 -0
  240. data/generated/google/apis/identitytoolkit_v3.rb +31 -0
  241. data/generated/google/apis/kgsearch_v1/classes.rb +59 -0
  242. data/generated/google/apis/kgsearch_v1/representations.rb +39 -0
  243. data/generated/google/apis/kgsearch_v1/service.rb +111 -0
  244. data/{spec/google/api_client/request_spec.rb → generated/google/apis/kgsearch_v1.rb} +16 -13
  245. data/generated/google/apis/licensing_v1/classes.rb +132 -0
  246. data/generated/google/apis/licensing_v1/representations.rb +68 -0
  247. data/generated/google/apis/licensing_v1/service.rb +369 -0
  248. data/generated/google/apis/licensing_v1.rb +34 -0
  249. data/generated/google/apis/logging_v1beta3/classes.rb +1079 -0
  250. data/generated/google/apis/logging_v1beta3/representations.rb +366 -0
  251. data/generated/google/apis/logging_v1beta3/service.rb +1001 -0
  252. data/generated/google/apis/logging_v1beta3.rb +47 -0
  253. data/generated/google/apis/manager_v1beta2/classes.rb +1287 -0
  254. data/generated/google/apis/manager_v1beta2/representations.rb +536 -0
  255. data/generated/google/apis/manager_v1beta2/service.rb +372 -0
  256. data/generated/google/apis/manager_v1beta2.rb +53 -0
  257. data/generated/google/apis/mapsengine_v1/classes.rb +2873 -0
  258. data/generated/google/apis/mapsengine_v1/representations.rb +1235 -0
  259. data/generated/google/apis/mapsengine_v1/service.rb +3388 -0
  260. data/generated/google/apis/mapsengine_v1.rb +38 -0
  261. data/generated/google/apis/mirror_v1/classes.rb +1072 -0
  262. data/generated/google/apis/mirror_v1/representations.rb +350 -0
  263. data/generated/google/apis/mirror_v1/service.rb +977 -0
  264. data/generated/google/apis/mirror_v1.rb +37 -0
  265. data/generated/google/apis/oauth2_v2/classes.rb +245 -0
  266. data/generated/google/apis/oauth2_v2/representations.rb +94 -0
  267. data/generated/google/apis/oauth2_v2/service.rb +199 -0
  268. data/generated/google/apis/oauth2_v2.rb +43 -0
  269. data/generated/google/apis/pagespeedonline_v2/classes.rb +614 -0
  270. data/generated/google/apis/pagespeedonline_v2/representations.rb +244 -0
  271. data/generated/google/apis/pagespeedonline_v2/service.rb +119 -0
  272. data/generated/google/apis/pagespeedonline_v2.rb +32 -0
  273. data/generated/google/apis/partners_v2/classes.rb +942 -0
  274. data/generated/google/apis/partners_v2/representations.rb +402 -0
  275. data/generated/google/apis/partners_v2/service.rb +400 -0
  276. data/generated/google/apis/partners_v2.rb +32 -0
  277. data/generated/google/apis/plus_domains_v1/classes.rb +2609 -0
  278. data/generated/google/apis/plus_domains_v1/representations.rb +987 -0
  279. data/generated/google/apis/plus_domains_v1/service.rb +904 -0
  280. data/generated/google/apis/plus_domains_v1.rb +61 -0
  281. data/generated/google/apis/plus_v1/classes.rb +2094 -0
  282. data/generated/google/apis/plus_v1/representations.rb +805 -0
  283. data/generated/google/apis/plus_v1/service.rb +470 -0
  284. data/generated/google/apis/plus_v1.rb +43 -0
  285. data/generated/google/apis/prediction_v1_6/classes.rb +751 -0
  286. data/generated/google/apis/prediction_v1_6/representations.rb +327 -0
  287. data/generated/google/apis/prediction_v1_6/service.rb +380 -0
  288. data/generated/google/apis/prediction_v1_6.rb +44 -0
  289. data/generated/google/apis/proximitybeacon_v1beta1/classes.rb +639 -0
  290. data/generated/google/apis/proximitybeacon_v1beta1/representations.rb +274 -0
  291. data/generated/google/apis/proximitybeacon_v1beta1/service.rb +591 -0
  292. data/generated/google/apis/proximitybeacon_v1beta1.rb +31 -0
  293. data/generated/google/apis/pubsub_v1/classes.rb +614 -0
  294. data/generated/google/apis/pubsub_v1/representations.rb +281 -0
  295. data/generated/google/apis/pubsub_v1/service.rb +774 -0
  296. data/generated/google/apis/pubsub_v1.rb +37 -0
  297. data/generated/google/apis/pubsub_v1beta2/classes.rb +620 -0
  298. data/generated/google/apis/pubsub_v1beta2/representations.rb +282 -0
  299. data/generated/google/apis/pubsub_v1beta2/service.rb +774 -0
  300. data/generated/google/apis/pubsub_v1beta2.rb +37 -0
  301. data/generated/google/apis/qpx_express_v1/classes.rb +1268 -0
  302. data/generated/google/apis/qpx_express_v1/representations.rb +424 -0
  303. data/generated/google/apis/qpx_express_v1/service.rb +100 -0
  304. data/generated/google/apis/qpx_express_v1.rb +31 -0
  305. data/generated/google/apis/replicapool_v1beta2/classes.rb +631 -0
  306. data/generated/google/apis/replicapool_v1beta2/representations.rb +236 -0
  307. data/generated/google/apis/replicapool_v1beta2/service.rb +608 -0
  308. data/generated/google/apis/replicapool_v1beta2.rb +44 -0
  309. data/generated/google/apis/replicapoolupdater_v1beta1/classes.rb +733 -0
  310. data/generated/google/apis/replicapoolupdater_v1beta1/representations.rb +264 -0
  311. data/generated/google/apis/replicapoolupdater_v1beta1/service.rb +508 -0
  312. data/generated/google/apis/replicapoolupdater_v1beta1.rb +44 -0
  313. data/generated/google/apis/reseller_v1/classes.rb +520 -0
  314. data/generated/google/apis/reseller_v1/representations.rb +200 -0
  315. data/generated/google/apis/reseller_v1/service.rb +623 -0
  316. data/generated/google/apis/reseller_v1.rb +37 -0
  317. data/generated/google/apis/resourceviews_v1beta2/classes.rb +660 -0
  318. data/generated/google/apis/resourceviews_v1beta2/representations.rb +269 -0
  319. data/generated/google/apis/resourceviews_v1beta2/service.rb +563 -0
  320. data/generated/google/apis/resourceviews_v1beta2.rb +50 -0
  321. data/generated/google/apis/script_v1/classes.rb +259 -0
  322. data/generated/google/apis/script_v1/representations.rb +106 -0
  323. data/generated/google/apis/script_v1/service.rb +98 -0
  324. data/generated/google/apis/script_v1.rb +61 -0
  325. data/generated/google/apis/site_verification_v1/classes.rb +185 -0
  326. data/generated/google/apis/site_verification_v1/representations.rb +101 -0
  327. data/generated/google/apis/site_verification_v1/service.rb +315 -0
  328. data/generated/google/apis/site_verification_v1.rb +37 -0
  329. data/generated/google/apis/sqladmin_v1beta4/classes.rb +2001 -0
  330. data/generated/google/apis/sqladmin_v1beta4/representations.rb +758 -0
  331. data/generated/google/apis/sqladmin_v1beta4/service.rb +1625 -0
  332. data/generated/google/apis/sqladmin_v1beta4.rb +37 -0
  333. data/generated/google/apis/storage_v1/classes.rb +1222 -0
  334. data/generated/google/apis/storage_v1/representations.rb +445 -0
  335. data/generated/google/apis/storage_v1/service.rb +1903 -0
  336. data/generated/google/apis/storage_v1.rb +46 -0
  337. data/generated/google/apis/storagetransfer_v1/classes.rb +1046 -0
  338. data/generated/google/apis/storagetransfer_v1/representations.rb +370 -0
  339. data/generated/google/apis/storagetransfer_v1/service.rb +473 -0
  340. data/generated/google/apis/storagetransfer_v1.rb +35 -0
  341. data/generated/google/apis/tagmanager_v1/classes.rb +1384 -0
  342. data/generated/google/apis/tagmanager_v1/representations.rb +515 -0
  343. data/generated/google/apis/tagmanager_v1/service.rb +1817 -0
  344. data/generated/google/apis/tagmanager_v1.rb +52 -0
  345. data/generated/google/apis/taskqueue_v1beta2/classes.rb +254 -0
  346. data/generated/google/apis/taskqueue_v1beta2/representations.rb +114 -0
  347. data/generated/google/apis/taskqueue_v1beta2/service.rb +408 -0
  348. data/generated/google/apis/taskqueue_v1beta2.rb +37 -0
  349. data/generated/google/apis/tasks_v1/classes.rb +296 -0
  350. data/generated/google/apis/tasks_v1/representations.rb +115 -0
  351. data/generated/google/apis/tasks_v1/service.rb +643 -0
  352. data/generated/google/apis/tasks_v1.rb +37 -0
  353. data/generated/google/apis/translate_v2/classes.rb +168 -0
  354. data/generated/google/apis/translate_v2/representations.rb +109 -0
  355. data/generated/google/apis/translate_v2/service.rb +182 -0
  356. data/generated/google/apis/translate_v2.rb +31 -0
  357. data/generated/google/apis/urlshortener_v1/classes.rb +246 -0
  358. data/generated/google/apis/urlshortener_v1/representations.rb +111 -0
  359. data/generated/google/apis/urlshortener_v1/service.rb +176 -0
  360. data/generated/google/apis/urlshortener_v1.rb +34 -0
  361. data/generated/google/apis/webmasters_v3/classes.rb +563 -0
  362. data/generated/google/apis/webmasters_v3/representations.rb +250 -0
  363. data/generated/google/apis/webmasters_v3/service.rb +573 -0
  364. data/generated/google/apis/webmasters_v3.rb +37 -0
  365. data/generated/google/apis/youtube_analytics_v1/classes.rb +546 -0
  366. data/generated/google/apis/youtube_analytics_v1/representations.rb +243 -0
  367. data/generated/google/apis/youtube_analytics_v1/service.rb +562 -0
  368. data/generated/google/apis/youtube_analytics_v1.rb +46 -0
  369. data/generated/google/apis/youtube_v3/classes.rb +8136 -0
  370. data/generated/google/apis/youtube_v3/representations.rb +2838 -0
  371. data/generated/google/apis/youtube_v3/service.rb +4403 -0
  372. data/generated/google/apis/youtube_v3.rb +49 -0
  373. data/generated/google/apis/youtubereporting_v1/classes.rb +258 -0
  374. data/generated/google/apis/youtubereporting_v1/representations.rb +128 -0
  375. data/generated/google/apis/youtubereporting_v1/service.rb +364 -0
  376. data/generated/google/apis/youtubereporting_v1.rb +38 -0
  377. data/google-api-client.gemspec +27 -39
  378. data/lib/google/api_client/auth/installed_app.rb +7 -5
  379. data/lib/google/api_client/auth/key_utils.rb +12 -11
  380. data/lib/google/api_client/auth/storage.rb +5 -2
  381. data/lib/google/api_client/auth/storages/file_store.rb +2 -3
  382. data/lib/google/api_client/auth/storages/redis_store.rb +7 -2
  383. data/lib/google/api_client/client_secrets.rb +4 -5
  384. data/lib/google/apis/core/api_command.rb +135 -0
  385. data/lib/google/apis/core/base_service.rb +317 -0
  386. data/lib/google/apis/core/batch.rb +239 -0
  387. data/lib/google/apis/core/download.rb +94 -0
  388. data/lib/google/apis/core/hashable.rb +44 -0
  389. data/lib/google/apis/core/http_client_adapter.rb +82 -0
  390. data/lib/google/apis/core/http_command.rb +312 -0
  391. data/lib/google/apis/core/json_representation.rb +127 -0
  392. data/lib/google/{api_client/version.rb → apis/core/logging.rb} +12 -8
  393. data/lib/google/apis/core/multipart.rb +187 -0
  394. data/lib/google/apis/core/upload.rb +288 -0
  395. data/lib/google/{api_client → apis}/errors.rb +39 -28
  396. data/lib/google/apis/generator/annotator.rb +295 -0
  397. data/lib/google/apis/generator/helpers.rb +74 -0
  398. data/lib/google/apis/generator/model.rb +143 -0
  399. data/lib/google/apis/generator/template.rb +124 -0
  400. data/lib/google/apis/generator/templates/_class.tmpl +40 -0
  401. data/lib/google/apis/generator/templates/_method.tmpl +92 -0
  402. data/lib/google/apis/generator/templates/_representation.tmpl +51 -0
  403. data/lib/google/apis/generator/templates/_representation_stub.tmpl +15 -0
  404. data/lib/google/apis/generator/templates/_representation_type.tmpl +10 -0
  405. data/lib/google/{api_client/reference.rb → apis/generator/templates/classes.rb.tmpl} +11 -9
  406. data/lib/google/apis/generator/templates/module.rb.tmpl +40 -0
  407. data/lib/google/apis/generator/templates/representations.rb.tmpl +32 -0
  408. data/lib/google/apis/generator/templates/service.rb.tmpl +60 -0
  409. data/lib/google/apis/generator.rb +70 -0
  410. data/lib/google/apis/options.rb +85 -0
  411. data/lib/google/apis/version.rb +39 -0
  412. data/lib/google/apis.rb +48 -0
  413. data/rakelib/metrics.rake +22 -0
  414. data/rakelib/rubocop.rake +10 -0
  415. data/rakelib/spec.rake +11 -0
  416. data/rakelib/yard.rake +11 -0
  417. data/samples/Gemfile +7 -0
  418. data/samples/README.md +51 -0
  419. data/samples/google-api-samples +32 -0
  420. data/samples/lib/base_cli.rb +94 -0
  421. data/samples/lib/samples/analytics.rb +62 -0
  422. data/samples/lib/samples/calendar.rb +83 -0
  423. data/samples/lib/samples/drive.rb +82 -0
  424. data/samples/lib/samples/gmail.rb +50 -0
  425. data/samples/lib/samples/pubsub.rb +114 -0
  426. data/samples/lib/samples/translate.rb +44 -0
  427. data/samples/lib/samples/you_tube.rb +44 -0
  428. data/script/generate +95 -0
  429. data/script/package +8 -0
  430. data/script/release +15 -0
  431. data/spec/fixtures/files/api_names.yaml +3 -0
  432. data/spec/fixtures/files/auth_stored_credentials.json +8 -0
  433. data/spec/fixtures/files/child/.gitignore +0 -0
  434. data/spec/fixtures/files/client_secrets.json +1 -0
  435. data/spec/fixtures/files/invalid.json +1 -0
  436. data/spec/fixtures/files/test.blah +1 -0
  437. data/spec/fixtures/files/test.txt +1 -0
  438. data/spec/fixtures/files/test_api.json +440 -0
  439. data/spec/google/api_client/auth/storage_spec.rb +1 -3
  440. data/spec/google/api_client/auth/storages/file_store_spec.rb +1 -2
  441. data/spec/google/api_client/auth/storages/redis_store_spec.rb +1 -3
  442. data/spec/google/api_client/client_secrets_spec.rb +38 -1
  443. data/spec/google/apis/core/api_command_spec.rb +209 -0
  444. data/spec/google/apis/core/batch_spec.rb +142 -0
  445. data/spec/google/apis/core/download_spec.rb +103 -0
  446. data/spec/google/apis/core/hashable_spec.rb +60 -0
  447. data/spec/google/apis/core/http_command_spec.rb +284 -0
  448. data/spec/google/apis/core/json_representation_spec.rb +192 -0
  449. data/spec/google/apis/core/service_spec.rb +247 -0
  450. data/spec/google/apis/core/upload_spec.rb +300 -0
  451. data/{lib/google/api_client/discovery.rb → spec/google/apis/generated_spec.rb} +13 -5
  452. data/spec/google/apis/generator/generator_spec.rb +272 -0
  453. data/spec/google/apis/logging_spec.rb +45 -0
  454. data/spec/google/apis/options_spec.rb +40 -0
  455. data/spec/integration_tests/adsense_spec.rb +29 -0
  456. data/spec/integration_tests/drive_spec.rb +35 -0
  457. data/spec/integration_tests/pubsub_spec.rb +48 -0
  458. data/spec/integration_tests/url_shortener_spec.rb +45 -0
  459. data/spec/spec_helper/load_path_spec.rb +33 -0
  460. data/spec/spec_helper.rb +131 -44
  461. data/third_party/hurley_patches.rb +103 -0
  462. metadata +533 -170
  463. data/lib/compat/multi_json.rb +0 -19
  464. data/lib/google/api_client/auth/file_storage.rb +0 -59
  465. data/lib/google/api_client/auth/jwt_asserter.rb +0 -126
  466. data/lib/google/api_client/auth/pkcs12.rb +0 -41
  467. data/lib/google/api_client/batch.rb +0 -325
  468. data/lib/google/api_client/charset.rb +0 -33
  469. data/lib/google/api_client/discovery/api.rb +0 -300
  470. data/lib/google/api_client/discovery/media.rb +0 -77
  471. data/lib/google/api_client/discovery/method.rb +0 -363
  472. data/lib/google/api_client/discovery/resource.rb +0 -156
  473. data/lib/google/api_client/discovery/schema.rb +0 -119
  474. data/lib/google/api_client/environment.rb +0 -42
  475. data/lib/google/api_client/gzip.rb +0 -28
  476. data/lib/google/api_client/logging.rb +0 -32
  477. data/lib/google/api_client/media.rb +0 -259
  478. data/lib/google/api_client/railtie.rb +0 -18
  479. data/lib/google/api_client/request.rb +0 -350
  480. data/lib/google/api_client/result.rb +0 -255
  481. data/lib/google/api_client/service/batch.rb +0 -110
  482. data/lib/google/api_client/service/request.rb +0 -144
  483. data/lib/google/api_client/service/resource.rb +0 -40
  484. data/lib/google/api_client/service/result.rb +0 -162
  485. data/lib/google/api_client/service/simple_file_store.rb +0 -151
  486. data/lib/google/api_client/service/stub_generator.rb +0 -61
  487. data/lib/google/api_client/service.rb +0 -233
  488. data/lib/google/api_client.rb +0 -750
  489. data/spec/google/api_client/batch_spec.rb +0 -248
  490. data/spec/google/api_client/discovery_spec.rb +0 -662
  491. data/spec/google/api_client/gzip_spec.rb +0 -98
  492. data/spec/google/api_client/media_spec.rb +0 -178
  493. data/spec/google/api_client/result_spec.rb +0 -207
  494. data/spec/google/api_client/service_account_spec.rb +0 -169
  495. data/spec/google/api_client/service_spec.rb +0 -618
  496. data/spec/google/api_client/simple_file_store_spec.rb +0 -133
  497. data/spec/google/api_client_spec.rb +0 -352
@@ -0,0 +1,2609 @@
1
+ # Copyright 2015 Google Inc.
2
+ #
3
+ # Licensed under the Apache License, Version 2.0 (the "License");
4
+ # you may not use this file except in compliance with the License.
5
+ # You may obtain a copy of the License at
6
+ #
7
+ # http://www.apache.org/licenses/LICENSE-2.0
8
+ #
9
+ # Unless required by applicable law or agreed to in writing, software
10
+ # distributed under the License is distributed on an "AS IS" BASIS,
11
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
+ # See the License for the specific language governing permissions and
13
+ # limitations under the License.
14
+
15
+ require 'date'
16
+ require 'google/apis/core/base_service'
17
+ require 'google/apis/core/json_representation'
18
+ require 'google/apis/core/hashable'
19
+ require 'google/apis/errors'
20
+
21
+ module Google
22
+ module Apis
23
+ module GenomicsV1
24
+
25
+ # The dataset list response.
26
+ class ListDatasetsResponse
27
+ include Google::Apis::Core::Hashable
28
+
29
+ # The list of matching Datasets.
30
+ # Corresponds to the JSON property `datasets`
31
+ # @return [Array<Google::Apis::GenomicsV1::Dataset>]
32
+ attr_accessor :datasets
33
+
34
+ # The continuation token, which is used to page through large result sets.
35
+ # Provide this value in a subsequent request to return the next page of results.
36
+ # This field will be empty if there aren't any additional results.
37
+ # Corresponds to the JSON property `nextPageToken`
38
+ # @return [String]
39
+ attr_accessor :next_page_token
40
+
41
+ def initialize(**args)
42
+ update!(**args)
43
+ end
44
+
45
+ # Update properties of this object
46
+ def update!(**args)
47
+ @datasets = args[:datasets] unless args[:datasets].nil?
48
+ @next_page_token = args[:next_page_token] unless args[:next_page_token].nil?
49
+ end
50
+ end
51
+
52
+ # A Dataset is a collection of genomic data. For more genomics resource
53
+ # definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/
54
+ # genomics/fundamentals-of-google-genomics)
55
+ class Dataset
56
+ include Google::Apis::Core::Hashable
57
+
58
+ # The server-generated dataset ID, unique across all datasets.
59
+ # Corresponds to the JSON property `id`
60
+ # @return [String]
61
+ attr_accessor :id
62
+
63
+ # The Google Developers Console project ID that this dataset belongs to.
64
+ # Corresponds to the JSON property `projectId`
65
+ # @return [String]
66
+ attr_accessor :project_id
67
+
68
+ # The dataset name.
69
+ # Corresponds to the JSON property `name`
70
+ # @return [String]
71
+ attr_accessor :name
72
+
73
+ # The time this dataset was created, in seconds from the epoch.
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+ # Corresponds to the JSON property `createTime`
75
+ # @return [String]
76
+ attr_accessor :create_time
77
+
78
+ def initialize(**args)
79
+ update!(**args)
80
+ end
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+
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+ # Update properties of this object
83
+ def update!(**args)
84
+ @id = args[:id] unless args[:id].nil?
85
+ @project_id = args[:project_id] unless args[:project_id].nil?
86
+ @name = args[:name] unless args[:name].nil?
87
+ @create_time = args[:create_time] unless args[:create_time].nil?
88
+ end
89
+ end
90
+
91
+ # A generic empty message that you can re-use to avoid defining duplicated empty
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+ # messages in your APIs. A typical example is to use it as the request or the
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+ # response type of an API method. For instance: service Foo ` rpc Bar(google.
94
+ # protobuf.Empty) returns (google.protobuf.Empty); ` The JSON representation for
95
+ # `Empty` is empty JSON object ````.
96
+ class Empty
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+ include Google::Apis::Core::Hashable
98
+
99
+ def initialize(**args)
100
+ update!(**args)
101
+ end
102
+
103
+ # Update properties of this object
104
+ def update!(**args)
105
+ end
106
+ end
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+
108
+ #
109
+ class UndeleteDatasetRequest
110
+ include Google::Apis::Core::Hashable
111
+
112
+ def initialize(**args)
113
+ update!(**args)
114
+ end
115
+
116
+ # Update properties of this object
117
+ def update!(**args)
118
+ end
119
+ end
120
+
121
+ # Request message for `SetIamPolicy` method.
122
+ class SetIamPolicyRequest
123
+ include Google::Apis::Core::Hashable
124
+
125
+ # Defines an Identity and Access Management (IAM) policy. It is used to specify
126
+ # access control policies for Cloud Platform resources. A `Policy` consists of a
127
+ # list of `bindings`. A `Binding` binds a list of `members` to a `role`, where
128
+ # the members can be user accounts, Google groups, Google domains, and service
129
+ # accounts. A `role` is a named list of permissions defined by IAM. **Example** `
130
+ # "bindings": [ ` "role": "roles/owner", "members": [ "user:mike@example.com", "
131
+ # group:admins@example.com", "domain:google.com", "serviceAccount:my-other-app@
132
+ # appspot.gserviceaccount.com"] `, ` "role": "roles/viewer", "members": ["user:
133
+ # sean@example.com"] ` ] ` For a description of IAM and its features, see the [
134
+ # IAM developer's guide](https://cloud.google.com/iam).
135
+ # Corresponds to the JSON property `policy`
136
+ # @return [Google::Apis::GenomicsV1::Policy]
137
+ attr_accessor :policy
138
+
139
+ def initialize(**args)
140
+ update!(**args)
141
+ end
142
+
143
+ # Update properties of this object
144
+ def update!(**args)
145
+ @policy = args[:policy] unless args[:policy].nil?
146
+ end
147
+ end
148
+
149
+ # Defines an Identity and Access Management (IAM) policy. It is used to specify
150
+ # access control policies for Cloud Platform resources. A `Policy` consists of a
151
+ # list of `bindings`. A `Binding` binds a list of `members` to a `role`, where
152
+ # the members can be user accounts, Google groups, Google domains, and service
153
+ # accounts. A `role` is a named list of permissions defined by IAM. **Example** `
154
+ # "bindings": [ ` "role": "roles/owner", "members": [ "user:mike@example.com", "
155
+ # group:admins@example.com", "domain:google.com", "serviceAccount:my-other-app@
156
+ # appspot.gserviceaccount.com"] `, ` "role": "roles/viewer", "members": ["user:
157
+ # sean@example.com"] ` ] ` For a description of IAM and its features, see the [
158
+ # IAM developer's guide](https://cloud.google.com/iam).
159
+ class Policy
160
+ include Google::Apis::Core::Hashable
161
+
162
+ # Version of the `Policy`. The default version is 0.
163
+ # Corresponds to the JSON property `version`
164
+ # @return [Fixnum]
165
+ attr_accessor :version
166
+
167
+ # Associates a list of `members` to a `role`. Multiple `bindings` must not be
168
+ # specified for the same `role`. `bindings` with no members will result in an
169
+ # error.
170
+ # Corresponds to the JSON property `bindings`
171
+ # @return [Array<Google::Apis::GenomicsV1::Binding>]
172
+ attr_accessor :bindings
173
+
174
+ # `etag` is used for optimistic concurrency control as a way to help prevent
175
+ # simultaneous updates of a policy from overwriting each other. It is strongly
176
+ # suggested that systems make use of the `etag` in the read-modify-write cycle
177
+ # to perform policy updates in order to avoid race conditions: An `etag` is
178
+ # returned in the response to `getIamPolicy`, and systems are expected to put
179
+ # that etag in the request to `setIamPolicy` to ensure that their change will be
180
+ # applied to the same version of the policy. If no `etag` is provided in the
181
+ # call to `setIamPolicy`, then the existing policy is overwritten blindly.
182
+ # Corresponds to the JSON property `etag`
183
+ # @return [String]
184
+ attr_accessor :etag
185
+
186
+ def initialize(**args)
187
+ update!(**args)
188
+ end
189
+
190
+ # Update properties of this object
191
+ def update!(**args)
192
+ @version = args[:version] unless args[:version].nil?
193
+ @bindings = args[:bindings] unless args[:bindings].nil?
194
+ @etag = args[:etag] unless args[:etag].nil?
195
+ end
196
+ end
197
+
198
+ # Associates `members` with a `role`.
199
+ class Binding
200
+ include Google::Apis::Core::Hashable
201
+
202
+ # Role that is assigned to `members`. For example, `roles/viewer`, `roles/editor`
203
+ # , or `roles/owner`. Required
204
+ # Corresponds to the JSON property `role`
205
+ # @return [String]
206
+ attr_accessor :role
207
+
208
+ # Specifies the identities requesting access for a Cloud Platform resource. `
209
+ # members` can have the following values: * `allUsers`: A special identifier
210
+ # that represents anyone who is on the internet; with or without a Google
211
+ # account. * `allAuthenticatedUsers`: A special identifier that represents
212
+ # anyone who is authenticated with a Google account or a service account. * `
213
+ # user:`emailid``: An email address that represents a specific Google account.
214
+ # For example, `alice@gmail.com` or `joe@example.com`. * `serviceAccount:`
215
+ # emailid``: An email address that represents a service account. For example, `
216
+ # my-other-app@appspot.gserviceaccount.com`. * `group:`emailid``: An email
217
+ # address that represents a Google group. For example, `admins@example.com`. * `
218
+ # domain:`domain``: A Google Apps domain name that represents all the users of
219
+ # that domain. For example, `google.com` or `example.com`.
220
+ # Corresponds to the JSON property `members`
221
+ # @return [Array<String>]
222
+ attr_accessor :members
223
+
224
+ def initialize(**args)
225
+ update!(**args)
226
+ end
227
+
228
+ # Update properties of this object
229
+ def update!(**args)
230
+ @role = args[:role] unless args[:role].nil?
231
+ @members = args[:members] unless args[:members].nil?
232
+ end
233
+ end
234
+
235
+ # Request message for `GetIamPolicy` method.
236
+ class GetIamPolicyRequest
237
+ include Google::Apis::Core::Hashable
238
+
239
+ def initialize(**args)
240
+ update!(**args)
241
+ end
242
+
243
+ # Update properties of this object
244
+ def update!(**args)
245
+ end
246
+ end
247
+
248
+ # Request message for `TestIamPermissions` method.
249
+ class TestIamPermissionsRequest
250
+ include Google::Apis::Core::Hashable
251
+
252
+ # REQUIRED: The set of permissions to check for the 'resource'. Permissions with
253
+ # wildcards (such as '*' or 'storage.*') are not allowed. Allowed permissions
254
+ # are: * `genomics.datasets.create` * `genomics.datasets.delete` * `genomics.
255
+ # datasets.get` * `genomics.datasets.list` * `genomics.datasets.update` * `
256
+ # genomics.datasets.getIamPolicy` * `genomics.datasets.setIamPolicy`
257
+ # Corresponds to the JSON property `permissions`
258
+ # @return [Array<String>]
259
+ attr_accessor :permissions
260
+
261
+ def initialize(**args)
262
+ update!(**args)
263
+ end
264
+
265
+ # Update properties of this object
266
+ def update!(**args)
267
+ @permissions = args[:permissions] unless args[:permissions].nil?
268
+ end
269
+ end
270
+
271
+ # Response message for `TestIamPermissions` method.
272
+ class TestIamPermissionsResponse
273
+ include Google::Apis::Core::Hashable
274
+
275
+ # A subset of `TestPermissionsRequest.permissions` that the caller is allowed.
276
+ # Corresponds to the JSON property `permissions`
277
+ # @return [Array<String>]
278
+ attr_accessor :permissions
279
+
280
+ def initialize(**args)
281
+ update!(**args)
282
+ end
283
+
284
+ # Update properties of this object
285
+ def update!(**args)
286
+ @permissions = args[:permissions] unless args[:permissions].nil?
287
+ end
288
+ end
289
+
290
+ # This resource represents a long-running operation that is the result of a
291
+ # network API call.
292
+ class Operation
293
+ include Google::Apis::Core::Hashable
294
+
295
+ # The server-assigned name, which is only unique within the same service that
296
+ # originally returns it. For example: `operations/CJHU7Oi_ChDrveSpBRjfuL-
297
+ # qzoWAgEw`
298
+ # Corresponds to the JSON property `name`
299
+ # @return [String]
300
+ attr_accessor :name
301
+
302
+ # An OperationMetadata object. This will always be returned with the Operation.
303
+ # Corresponds to the JSON property `metadata`
304
+ # @return [Hash<String,Object>]
305
+ attr_accessor :metadata
306
+
307
+ # If the value is `false`, it means the operation is still in progress. If true,
308
+ # the operation is completed, and either `error` or `response` is available.
309
+ # Corresponds to the JSON property `done`
310
+ # @return [Boolean]
311
+ attr_accessor :done
312
+ alias_method :done?, :done
313
+
314
+ # The `Status` type defines a logical error model that is suitable for different
315
+ # programming environments, including REST APIs and RPC APIs. It is used by [
316
+ # gRPC](https://github.com/grpc). The error model is designed to be: - Simple to
317
+ # use and understand for most users - Flexible enough to meet unexpected needs #
318
+ # Overview The `Status` message contains three pieces of data: error code, error
319
+ # message, and error details. The error code should be an enum value of google.
320
+ # rpc.Code, but it may accept additional error codes if needed. The error
321
+ # message should be a developer-facing English message that helps developers *
322
+ # understand* and *resolve* the error. If a localized user-facing error message
323
+ # is needed, put the localized message in the error details or localize it in
324
+ # the client. The optional error details may contain arbitrary information about
325
+ # the error. There is a predefined set of error detail types in the package `
326
+ # google.rpc` which can be used for common error conditions. # Language mapping
327
+ # The `Status` message is the logical representation of the error model, but it
328
+ # is not necessarily the actual wire format. When the `Status` message is
329
+ # exposed in different client libraries and different wire protocols, it can be
330
+ # mapped differently. For example, it will likely be mapped to some exceptions
331
+ # in Java, but more likely mapped to some error codes in C. # Other uses The
332
+ # error model and the `Status` message can be used in a variety of environments,
333
+ # either with or without APIs, to provide a consistent developer experience
334
+ # across different environments. Example uses of this error model include: -
335
+ # Partial errors. If a service needs to return partial errors to the client, it
336
+ # may embed the `Status` in the normal response to indicate the partial errors. -
337
+ # Workflow errors. A typical workflow has multiple steps. Each step may have a `
338
+ # Status` message for error reporting purpose. - Batch operations. If a client
339
+ # uses batch request and batch response, the `Status` message should be used
340
+ # directly inside batch response, one for each error sub-response. -
341
+ # Asynchronous operations. If an API call embeds asynchronous operation results
342
+ # in its response, the status of those operations should be represented directly
343
+ # using the `Status` message. - Logging. If some API errors are stored in logs,
344
+ # the message `Status` could be used directly after any stripping needed for
345
+ # security/privacy reasons.
346
+ # Corresponds to the JSON property `error`
347
+ # @return [Google::Apis::GenomicsV1::Status]
348
+ attr_accessor :error
349
+
350
+ # If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If
351
+ # importing Variants, an ImportVariantsResponse is returned. For exports, an
352
+ # empty response is returned.
353
+ # Corresponds to the JSON property `response`
354
+ # @return [Hash<String,Object>]
355
+ attr_accessor :response
356
+
357
+ def initialize(**args)
358
+ update!(**args)
359
+ end
360
+
361
+ # Update properties of this object
362
+ def update!(**args)
363
+ @name = args[:name] unless args[:name].nil?
364
+ @metadata = args[:metadata] unless args[:metadata].nil?
365
+ @done = args[:done] unless args[:done].nil?
366
+ @error = args[:error] unless args[:error].nil?
367
+ @response = args[:response] unless args[:response].nil?
368
+ end
369
+ end
370
+
371
+ # The `Status` type defines a logical error model that is suitable for different
372
+ # programming environments, including REST APIs and RPC APIs. It is used by [
373
+ # gRPC](https://github.com/grpc). The error model is designed to be: - Simple to
374
+ # use and understand for most users - Flexible enough to meet unexpected needs #
375
+ # Overview The `Status` message contains three pieces of data: error code, error
376
+ # message, and error details. The error code should be an enum value of google.
377
+ # rpc.Code, but it may accept additional error codes if needed. The error
378
+ # message should be a developer-facing English message that helps developers *
379
+ # understand* and *resolve* the error. If a localized user-facing error message
380
+ # is needed, put the localized message in the error details or localize it in
381
+ # the client. The optional error details may contain arbitrary information about
382
+ # the error. There is a predefined set of error detail types in the package `
383
+ # google.rpc` which can be used for common error conditions. # Language mapping
384
+ # The `Status` message is the logical representation of the error model, but it
385
+ # is not necessarily the actual wire format. When the `Status` message is
386
+ # exposed in different client libraries and different wire protocols, it can be
387
+ # mapped differently. For example, it will likely be mapped to some exceptions
388
+ # in Java, but more likely mapped to some error codes in C. # Other uses The
389
+ # error model and the `Status` message can be used in a variety of environments,
390
+ # either with or without APIs, to provide a consistent developer experience
391
+ # across different environments. Example uses of this error model include: -
392
+ # Partial errors. If a service needs to return partial errors to the client, it
393
+ # may embed the `Status` in the normal response to indicate the partial errors. -
394
+ # Workflow errors. A typical workflow has multiple steps. Each step may have a `
395
+ # Status` message for error reporting purpose. - Batch operations. If a client
396
+ # uses batch request and batch response, the `Status` message should be used
397
+ # directly inside batch response, one for each error sub-response. -
398
+ # Asynchronous operations. If an API call embeds asynchronous operation results
399
+ # in its response, the status of those operations should be represented directly
400
+ # using the `Status` message. - Logging. If some API errors are stored in logs,
401
+ # the message `Status` could be used directly after any stripping needed for
402
+ # security/privacy reasons.
403
+ class Status
404
+ include Google::Apis::Core::Hashable
405
+
406
+ # The status code, which should be an enum value of google.rpc.Code.
407
+ # Corresponds to the JSON property `code`
408
+ # @return [Fixnum]
409
+ attr_accessor :code
410
+
411
+ # A developer-facing error message, which should be in English. Any user-facing
412
+ # error message should be localized and sent in the google.rpc.Status.details
413
+ # field, or localized by the client.
414
+ # Corresponds to the JSON property `message`
415
+ # @return [String]
416
+ attr_accessor :message
417
+
418
+ # A list of messages that carry the error details. There will be a common set of
419
+ # message types for APIs to use.
420
+ # Corresponds to the JSON property `details`
421
+ # @return [Array<Hash<String,Object>>]
422
+ attr_accessor :details
423
+
424
+ def initialize(**args)
425
+ update!(**args)
426
+ end
427
+
428
+ # Update properties of this object
429
+ def update!(**args)
430
+ @code = args[:code] unless args[:code].nil?
431
+ @message = args[:message] unless args[:message].nil?
432
+ @details = args[:details] unless args[:details].nil?
433
+ end
434
+ end
435
+
436
+ # The response message for Operations.ListOperations.
437
+ class ListOperationsResponse
438
+ include Google::Apis::Core::Hashable
439
+
440
+ # A list of operations that matches the specified filter in the request.
441
+ # Corresponds to the JSON property `operations`
442
+ # @return [Array<Google::Apis::GenomicsV1::Operation>]
443
+ attr_accessor :operations
444
+
445
+ # The standard List next-page token.
446
+ # Corresponds to the JSON property `nextPageToken`
447
+ # @return [String]
448
+ attr_accessor :next_page_token
449
+
450
+ def initialize(**args)
451
+ update!(**args)
452
+ end
453
+
454
+ # Update properties of this object
455
+ def update!(**args)
456
+ @operations = args[:operations] unless args[:operations].nil?
457
+ @next_page_token = args[:next_page_token] unless args[:next_page_token].nil?
458
+ end
459
+ end
460
+
461
+ # The request message for Operations.CancelOperation.
462
+ class CancelOperationRequest
463
+ include Google::Apis::Core::Hashable
464
+
465
+ def initialize(**args)
466
+ update!(**args)
467
+ end
468
+
469
+ # Update properties of this object
470
+ def update!(**args)
471
+ end
472
+ end
473
+
474
+ # The read group set import request.
475
+ class ImportReadGroupSetsRequest
476
+ include Google::Apis::Core::Hashable
477
+
478
+ # Required. The ID of the dataset these read group sets will belong to. The
479
+ # caller must have WRITE permissions to this dataset.
480
+ # Corresponds to the JSON property `datasetId`
481
+ # @return [String]
482
+ attr_accessor :dataset_id
483
+
484
+ # The reference set to which the imported read group sets are aligned to, if any.
485
+ # The reference names of this reference set must be a superset of those found
486
+ # in the imported file headers. If no reference set id is provided, a best
487
+ # effort is made to associate with a matching reference set.
488
+ # Corresponds to the JSON property `referenceSetId`
489
+ # @return [String]
490
+ attr_accessor :reference_set_id
491
+
492
+ # A list of URIs pointing at [BAM files](https://samtools.github.io/hts-specs/
493
+ # SAMv1.pdf) in Google Cloud Storage.
494
+ # Corresponds to the JSON property `sourceUris`
495
+ # @return [Array<String>]
496
+ attr_accessor :source_uris
497
+
498
+ # The partition strategy describes how read groups are partitioned into read
499
+ # group sets.
500
+ # Corresponds to the JSON property `partitionStrategy`
501
+ # @return [String]
502
+ attr_accessor :partition_strategy
503
+
504
+ def initialize(**args)
505
+ update!(**args)
506
+ end
507
+
508
+ # Update properties of this object
509
+ def update!(**args)
510
+ @dataset_id = args[:dataset_id] unless args[:dataset_id].nil?
511
+ @reference_set_id = args[:reference_set_id] unless args[:reference_set_id].nil?
512
+ @source_uris = args[:source_uris] unless args[:source_uris].nil?
513
+ @partition_strategy = args[:partition_strategy] unless args[:partition_strategy].nil?
514
+ end
515
+ end
516
+
517
+ # The read group set export request.
518
+ class ExportReadGroupSetRequest
519
+ include Google::Apis::Core::Hashable
520
+
521
+ # Required. The Google Developers Console project ID that owns this export. The
522
+ # caller must have WRITE access to this project.
523
+ # Corresponds to the JSON property `projectId`
524
+ # @return [String]
525
+ attr_accessor :project_id
526
+
527
+ # Required. A Google Cloud Storage URI for the exported BAM file. The currently
528
+ # authenticated user must have write access to the new file. An error will be
529
+ # returned if the URI already contains data.
530
+ # Corresponds to the JSON property `exportUri`
531
+ # @return [String]
532
+ attr_accessor :export_uri
533
+
534
+ # The reference names to export. If this is not specified, all reference
535
+ # sequences, including unmapped reads, are exported. Use `*` to export only
536
+ # unmapped reads.
537
+ # Corresponds to the JSON property `referenceNames`
538
+ # @return [Array<String>]
539
+ attr_accessor :reference_names
540
+
541
+ def initialize(**args)
542
+ update!(**args)
543
+ end
544
+
545
+ # Update properties of this object
546
+ def update!(**args)
547
+ @project_id = args[:project_id] unless args[:project_id].nil?
548
+ @export_uri = args[:export_uri] unless args[:export_uri].nil?
549
+ @reference_names = args[:reference_names] unless args[:reference_names].nil?
550
+ end
551
+ end
552
+
553
+ # The read group set search request.
554
+ class SearchReadGroupSetsRequest
555
+ include Google::Apis::Core::Hashable
556
+
557
+ # Restricts this query to read group sets within the given datasets. At least
558
+ # one ID must be provided.
559
+ # Corresponds to the JSON property `datasetIds`
560
+ # @return [Array<String>]
561
+ attr_accessor :dataset_ids
562
+
563
+ # Only return read group sets for which a substring of the name matches this
564
+ # string.
565
+ # Corresponds to the JSON property `name`
566
+ # @return [String]
567
+ attr_accessor :name
568
+
569
+ # The continuation token, which is used to page through large result sets. To
570
+ # get the next page of results, set this parameter to the value of `
571
+ # nextPageToken` from the previous response.
572
+ # Corresponds to the JSON property `pageToken`
573
+ # @return [String]
574
+ attr_accessor :page_token
575
+
576
+ # The maximum number of results to return in a single page. If unspecified,
577
+ # defaults to 256. The maximum value is 1024.
578
+ # Corresponds to the JSON property `pageSize`
579
+ # @return [Fixnum]
580
+ attr_accessor :page_size
581
+
582
+ def initialize(**args)
583
+ update!(**args)
584
+ end
585
+
586
+ # Update properties of this object
587
+ def update!(**args)
588
+ @dataset_ids = args[:dataset_ids] unless args[:dataset_ids].nil?
589
+ @name = args[:name] unless args[:name].nil?
590
+ @page_token = args[:page_token] unless args[:page_token].nil?
591
+ @page_size = args[:page_size] unless args[:page_size].nil?
592
+ end
593
+ end
594
+
595
+ # The read group set search response.
596
+ class SearchReadGroupSetsResponse
597
+ include Google::Apis::Core::Hashable
598
+
599
+ # The list of matching read group sets.
600
+ # Corresponds to the JSON property `readGroupSets`
601
+ # @return [Array<Google::Apis::GenomicsV1::ReadGroupSet>]
602
+ attr_accessor :read_group_sets
603
+
604
+ # The continuation token, which is used to page through large result sets.
605
+ # Provide this value in a subsequent request to return the next page of results.
606
+ # This field will be empty if there aren't any additional results.
607
+ # Corresponds to the JSON property `nextPageToken`
608
+ # @return [String]
609
+ attr_accessor :next_page_token
610
+
611
+ def initialize(**args)
612
+ update!(**args)
613
+ end
614
+
615
+ # Update properties of this object
616
+ def update!(**args)
617
+ @read_group_sets = args[:read_group_sets] unless args[:read_group_sets].nil?
618
+ @next_page_token = args[:next_page_token] unless args[:next_page_token].nil?
619
+ end
620
+ end
621
+
622
+ # A read group set is a logical collection of read groups, which are collections
623
+ # of reads produced by a sequencer. A read group set typically models reads
624
+ # corresponding to one sample, sequenced one way, and aligned one way. * A read
625
+ # group set belongs to one dataset. * A read group belongs to one read group set.
626
+ # * A read belongs to one read group. For more genomics resource definitions,
627
+ # see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/
628
+ # fundamentals-of-google-genomics)
629
+ class ReadGroupSet
630
+ include Google::Apis::Core::Hashable
631
+
632
+ # The server-generated read group set ID, unique for all read group sets.
633
+ # Corresponds to the JSON property `id`
634
+ # @return [String]
635
+ attr_accessor :id
636
+
637
+ # The dataset to which this read group set belongs.
638
+ # Corresponds to the JSON property `datasetId`
639
+ # @return [String]
640
+ attr_accessor :dataset_id
641
+
642
+ # The reference set to which the reads in this read group set are aligned.
643
+ # Corresponds to the JSON property `referenceSetId`
644
+ # @return [String]
645
+ attr_accessor :reference_set_id
646
+
647
+ # The read group set name. By default this will be initialized to the sample
648
+ # name of the sequenced data contained in this set.
649
+ # Corresponds to the JSON property `name`
650
+ # @return [String]
651
+ attr_accessor :name
652
+
653
+ # The filename of the original source file for this read group set, if any.
654
+ # Corresponds to the JSON property `filename`
655
+ # @return [String]
656
+ attr_accessor :filename
657
+
658
+ # The read groups in this set. There are typically 1-10 read groups in a read
659
+ # group set.
660
+ # Corresponds to the JSON property `readGroups`
661
+ # @return [Array<Google::Apis::GenomicsV1::ReadGroup>]
662
+ attr_accessor :read_groups
663
+
664
+ # A map of additional read group set information.
665
+ # Corresponds to the JSON property `info`
666
+ # @return [Hash<String,Array<Object>>]
667
+ attr_accessor :info
668
+
669
+ def initialize(**args)
670
+ update!(**args)
671
+ end
672
+
673
+ # Update properties of this object
674
+ def update!(**args)
675
+ @id = args[:id] unless args[:id].nil?
676
+ @dataset_id = args[:dataset_id] unless args[:dataset_id].nil?
677
+ @reference_set_id = args[:reference_set_id] unless args[:reference_set_id].nil?
678
+ @name = args[:name] unless args[:name].nil?
679
+ @filename = args[:filename] unless args[:filename].nil?
680
+ @read_groups = args[:read_groups] unless args[:read_groups].nil?
681
+ @info = args[:info] unless args[:info].nil?
682
+ end
683
+ end
684
+
685
+ # A read group is all the data that's processed the same way by the sequencer.
686
+ class ReadGroup
687
+ include Google::Apis::Core::Hashable
688
+
689
+ # The server-generated read group ID, unique for all read groups. Note: This is
690
+ # different than the @RG ID field in the SAM spec. For that value, see name.
691
+ # Corresponds to the JSON property `id`
692
+ # @return [String]
693
+ attr_accessor :id
694
+
695
+ # The dataset to which this read group belongs.
696
+ # Corresponds to the JSON property `datasetId`
697
+ # @return [String]
698
+ attr_accessor :dataset_id
699
+
700
+ # The read group name. This corresponds to the @RG ID field in the SAM spec.
701
+ # Corresponds to the JSON property `name`
702
+ # @return [String]
703
+ attr_accessor :name
704
+
705
+ # A free-form text description of this read group.
706
+ # Corresponds to the JSON property `description`
707
+ # @return [String]
708
+ attr_accessor :description
709
+
710
+ # A client-supplied sample identifier for the reads in this read group.
711
+ # Corresponds to the JSON property `sampleId`
712
+ # @return [String]
713
+ attr_accessor :sample_id
714
+
715
+ # The experiment used to generate this read group.
716
+ # Corresponds to the JSON property `experiment`
717
+ # @return [Google::Apis::GenomicsV1::Experiment]
718
+ attr_accessor :experiment
719
+
720
+ # The predicted insert size of this read group. The insert size is the length
721
+ # the sequenced DNA fragment from end-to-end, not including the adapters.
722
+ # Corresponds to the JSON property `predictedInsertSize`
723
+ # @return [Fixnum]
724
+ attr_accessor :predicted_insert_size
725
+
726
+ # The programs used to generate this read group. Programs are always identical
727
+ # for all read groups within a read group set. For this reason, only the first
728
+ # read group in a returned set will have this field populated.
729
+ # Corresponds to the JSON property `programs`
730
+ # @return [Array<Google::Apis::GenomicsV1::Program>]
731
+ attr_accessor :programs
732
+
733
+ # The reference set the reads in this read group are aligned to.
734
+ # Corresponds to the JSON property `referenceSetId`
735
+ # @return [String]
736
+ attr_accessor :reference_set_id
737
+
738
+ # A map of additional read group information. This must be of the form map (
739
+ # string key mapping to a list of string values).
740
+ # Corresponds to the JSON property `info`
741
+ # @return [Hash<String,Array<Object>>]
742
+ attr_accessor :info
743
+
744
+ def initialize(**args)
745
+ update!(**args)
746
+ end
747
+
748
+ # Update properties of this object
749
+ def update!(**args)
750
+ @id = args[:id] unless args[:id].nil?
751
+ @dataset_id = args[:dataset_id] unless args[:dataset_id].nil?
752
+ @name = args[:name] unless args[:name].nil?
753
+ @description = args[:description] unless args[:description].nil?
754
+ @sample_id = args[:sample_id] unless args[:sample_id].nil?
755
+ @experiment = args[:experiment] unless args[:experiment].nil?
756
+ @predicted_insert_size = args[:predicted_insert_size] unless args[:predicted_insert_size].nil?
757
+ @programs = args[:programs] unless args[:programs].nil?
758
+ @reference_set_id = args[:reference_set_id] unless args[:reference_set_id].nil?
759
+ @info = args[:info] unless args[:info].nil?
760
+ end
761
+ end
762
+
763
+ #
764
+ class Experiment
765
+ include Google::Apis::Core::Hashable
766
+
767
+ # A client-supplied library identifier; a library is a collection of DNA
768
+ # fragments which have been prepared for sequencing from a sample. This field is
769
+ # important for quality control as error or bias can be introduced during sample
770
+ # preparation.
771
+ # Corresponds to the JSON property `libraryId`
772
+ # @return [String]
773
+ attr_accessor :library_id
774
+
775
+ # The platform unit used as part of this experiment, for example flowcell-
776
+ # barcode.lane for Illumina or slide for SOLiD. Corresponds to the @RG PU field
777
+ # in the SAM spec.
778
+ # Corresponds to the JSON property `platformUnit`
779
+ # @return [String]
780
+ attr_accessor :platform_unit
781
+
782
+ # The sequencing center used as part of this experiment.
783
+ # Corresponds to the JSON property `sequencingCenter`
784
+ # @return [String]
785
+ attr_accessor :sequencing_center
786
+
787
+ # The instrument model used as part of this experiment. This maps to sequencing
788
+ # technology in the SAM spec.
789
+ # Corresponds to the JSON property `instrumentModel`
790
+ # @return [String]
791
+ attr_accessor :instrument_model
792
+
793
+ def initialize(**args)
794
+ update!(**args)
795
+ end
796
+
797
+ # Update properties of this object
798
+ def update!(**args)
799
+ @library_id = args[:library_id] unless args[:library_id].nil?
800
+ @platform_unit = args[:platform_unit] unless args[:platform_unit].nil?
801
+ @sequencing_center = args[:sequencing_center] unless args[:sequencing_center].nil?
802
+ @instrument_model = args[:instrument_model] unless args[:instrument_model].nil?
803
+ end
804
+ end
805
+
806
+ #
807
+ class Program
808
+ include Google::Apis::Core::Hashable
809
+
810
+ # The command line used to run this program.
811
+ # Corresponds to the JSON property `commandLine`
812
+ # @return [String]
813
+ attr_accessor :command_line
814
+
815
+ # The user specified locally unique ID of the program. Used along with `
816
+ # prevProgramId` to define an ordering between programs.
817
+ # Corresponds to the JSON property `id`
818
+ # @return [String]
819
+ attr_accessor :id
820
+
821
+ # The display name of the program. This is typically the colloquial name of the
822
+ # tool used, for example 'bwa' or 'picard'.
823
+ # Corresponds to the JSON property `name`
824
+ # @return [String]
825
+ attr_accessor :name
826
+
827
+ # The ID of the program run before this one.
828
+ # Corresponds to the JSON property `prevProgramId`
829
+ # @return [String]
830
+ attr_accessor :prev_program_id
831
+
832
+ # The version of the program run.
833
+ # Corresponds to the JSON property `version`
834
+ # @return [String]
835
+ attr_accessor :version
836
+
837
+ def initialize(**args)
838
+ update!(**args)
839
+ end
840
+
841
+ # Update properties of this object
842
+ def update!(**args)
843
+ @command_line = args[:command_line] unless args[:command_line].nil?
844
+ @id = args[:id] unless args[:id].nil?
845
+ @name = args[:name] unless args[:name].nil?
846
+ @prev_program_id = args[:prev_program_id] unless args[:prev_program_id].nil?
847
+ @version = args[:version] unless args[:version].nil?
848
+ end
849
+ end
850
+
851
+ #
852
+ class ListCoverageBucketsResponse
853
+ include Google::Apis::Core::Hashable
854
+
855
+ # The length of each coverage bucket in base pairs. Note that buckets at the end
856
+ # of a reference sequence may be shorter. This value is omitted if the bucket
857
+ # width is infinity (the default behaviour, with no range or `targetBucketWidth`)
858
+ # .
859
+ # Corresponds to the JSON property `bucketWidth`
860
+ # @return [String]
861
+ attr_accessor :bucket_width
862
+
863
+ # The coverage buckets. The list of buckets is sparse; a bucket with 0
864
+ # overlapping reads is not returned. A bucket never crosses more than one
865
+ # reference sequence. Each bucket has width `bucketWidth`, unless its end is the
866
+ # end of the reference sequence.
867
+ # Corresponds to the JSON property `coverageBuckets`
868
+ # @return [Array<Google::Apis::GenomicsV1::CoverageBucket>]
869
+ attr_accessor :coverage_buckets
870
+
871
+ # The continuation token, which is used to page through large result sets.
872
+ # Provide this value in a subsequent request to return the next page of results.
873
+ # This field will be empty if there aren't any additional results.
874
+ # Corresponds to the JSON property `nextPageToken`
875
+ # @return [String]
876
+ attr_accessor :next_page_token
877
+
878
+ def initialize(**args)
879
+ update!(**args)
880
+ end
881
+
882
+ # Update properties of this object
883
+ def update!(**args)
884
+ @bucket_width = args[:bucket_width] unless args[:bucket_width].nil?
885
+ @coverage_buckets = args[:coverage_buckets] unless args[:coverage_buckets].nil?
886
+ @next_page_token = args[:next_page_token] unless args[:next_page_token].nil?
887
+ end
888
+ end
889
+
890
+ # A bucket over which read coverage has been precomputed. A bucket corresponds
891
+ # to a specific range of the reference sequence.
892
+ class CoverageBucket
893
+ include Google::Apis::Core::Hashable
894
+
895
+ # A 0-based half-open genomic coordinate range for search requests.
896
+ # Corresponds to the JSON property `range`
897
+ # @return [Google::Apis::GenomicsV1::Range]
898
+ attr_accessor :range
899
+
900
+ # The average number of reads which are aligned to each individual reference
901
+ # base in this bucket.
902
+ # Corresponds to the JSON property `meanCoverage`
903
+ # @return [Float]
904
+ attr_accessor :mean_coverage
905
+
906
+ def initialize(**args)
907
+ update!(**args)
908
+ end
909
+
910
+ # Update properties of this object
911
+ def update!(**args)
912
+ @range = args[:range] unless args[:range].nil?
913
+ @mean_coverage = args[:mean_coverage] unless args[:mean_coverage].nil?
914
+ end
915
+ end
916
+
917
+ # A 0-based half-open genomic coordinate range for search requests.
918
+ class Range
919
+ include Google::Apis::Core::Hashable
920
+
921
+ # The reference sequence name, for example `chr1`, `1`, or `chrX`.
922
+ # Corresponds to the JSON property `referenceName`
923
+ # @return [String]
924
+ attr_accessor :reference_name
925
+
926
+ # The start position of the range on the reference, 0-based inclusive.
927
+ # Corresponds to the JSON property `start`
928
+ # @return [String]
929
+ attr_accessor :start
930
+
931
+ # The end position of the range on the reference, 0-based exclusive.
932
+ # Corresponds to the JSON property `end`
933
+ # @return [String]
934
+ attr_accessor :end
935
+
936
+ def initialize(**args)
937
+ update!(**args)
938
+ end
939
+
940
+ # Update properties of this object
941
+ def update!(**args)
942
+ @reference_name = args[:reference_name] unless args[:reference_name].nil?
943
+ @start = args[:start] unless args[:start].nil?
944
+ @end = args[:end] unless args[:end].nil?
945
+ end
946
+ end
947
+
948
+ # The read search request.
949
+ class SearchReadsRequest
950
+ include Google::Apis::Core::Hashable
951
+
952
+ # The IDs of the read groups sets within which to search for reads. All
953
+ # specified read group sets must be aligned against a common set of reference
954
+ # sequences; this defines the genomic coordinates for the query. Must specify
955
+ # one of `readGroupSetIds` or `readGroupIds`.
956
+ # Corresponds to the JSON property `readGroupSetIds`
957
+ # @return [Array<String>]
958
+ attr_accessor :read_group_set_ids
959
+
960
+ # The IDs of the read groups within which to search for reads. All specified
961
+ # read groups must belong to the same read group sets. Must specify one of `
962
+ # readGroupSetIds` or `readGroupIds`.
963
+ # Corresponds to the JSON property `readGroupIds`
964
+ # @return [Array<String>]
965
+ attr_accessor :read_group_ids
966
+
967
+ # The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to `*`,
968
+ # only unmapped reads are returned. If unspecified, all reads (mapped and
969
+ # unmapped) are returned.
970
+ # Corresponds to the JSON property `referenceName`
971
+ # @return [String]
972
+ attr_accessor :reference_name
973
+
974
+ # The start position of the range on the reference, 0-based inclusive. If
975
+ # specified, `referenceName` must also be specified.
976
+ # Corresponds to the JSON property `start`
977
+ # @return [String]
978
+ attr_accessor :start
979
+
980
+ # The end position of the range on the reference, 0-based exclusive. If
981
+ # specified, `referenceName` must also be specified.
982
+ # Corresponds to the JSON property `end`
983
+ # @return [String]
984
+ attr_accessor :end
985
+
986
+ # The continuation token, which is used to page through large result sets. To
987
+ # get the next page of results, set this parameter to the value of `
988
+ # nextPageToken` from the previous response.
989
+ # Corresponds to the JSON property `pageToken`
990
+ # @return [String]
991
+ attr_accessor :page_token
992
+
993
+ # The maximum number of results to return in a single page. If unspecified,
994
+ # defaults to 256. The maximum value is 2048.
995
+ # Corresponds to the JSON property `pageSize`
996
+ # @return [Fixnum]
997
+ attr_accessor :page_size
998
+
999
+ def initialize(**args)
1000
+ update!(**args)
1001
+ end
1002
+
1003
+ # Update properties of this object
1004
+ def update!(**args)
1005
+ @read_group_set_ids = args[:read_group_set_ids] unless args[:read_group_set_ids].nil?
1006
+ @read_group_ids = args[:read_group_ids] unless args[:read_group_ids].nil?
1007
+ @reference_name = args[:reference_name] unless args[:reference_name].nil?
1008
+ @start = args[:start] unless args[:start].nil?
1009
+ @end = args[:end] unless args[:end].nil?
1010
+ @page_token = args[:page_token] unless args[:page_token].nil?
1011
+ @page_size = args[:page_size] unless args[:page_size].nil?
1012
+ end
1013
+ end
1014
+
1015
+ # The read search response.
1016
+ class SearchReadsResponse
1017
+ include Google::Apis::Core::Hashable
1018
+
1019
+ # The list of matching alignments sorted by mapped genomic coordinate, if any,
1020
+ # ascending in position within the same reference. Unmapped reads, which have no
1021
+ # position, are returned contiguously and are sorted in ascending lexicographic
1022
+ # order by fragment name.
1023
+ # Corresponds to the JSON property `alignments`
1024
+ # @return [Array<Google::Apis::GenomicsV1::Read>]
1025
+ attr_accessor :alignments
1026
+
1027
+ # The continuation token, which is used to page through large result sets.
1028
+ # Provide this value in a subsequent request to return the next page of results.
1029
+ # This field will be empty if there aren't any additional results.
1030
+ # Corresponds to the JSON property `nextPageToken`
1031
+ # @return [String]
1032
+ attr_accessor :next_page_token
1033
+
1034
+ def initialize(**args)
1035
+ update!(**args)
1036
+ end
1037
+
1038
+ # Update properties of this object
1039
+ def update!(**args)
1040
+ @alignments = args[:alignments] unless args[:alignments].nil?
1041
+ @next_page_token = args[:next_page_token] unless args[:next_page_token].nil?
1042
+ end
1043
+ end
1044
+
1045
+ # A read alignment describes a linear alignment of a string of DNA to a
1046
+ # reference sequence, in addition to metadata about the fragment (the molecule
1047
+ # of DNA sequenced) and the read (the bases which were read by the sequencer). A
1048
+ # read is equivalent to a line in a SAM file. A read belongs to exactly one read
1049
+ # group and exactly one read group set. For more genomics resource definitions,
1050
+ # see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/
1051
+ # fundamentals-of-google-genomics) ### Reverse-stranded reads Mapped reads (
1052
+ # reads having a non-null `alignment`) can be aligned to either the forward or
1053
+ # the reverse strand of their associated reference. Strandedness of a mapped
1054
+ # read is encoded by `alignment.position.reverseStrand`. If we consider the
1055
+ # reference to be a forward-stranded coordinate space of `[0, reference.length)`
1056
+ # with `0` as the left-most position and `reference.length` as the right-most
1057
+ # position, reads are always aligned left to right. That is, `alignment.position.
1058
+ # position` always refers to the left-most reference coordinate and `alignment.
1059
+ # cigar` describes the alignment of this read to the reference from left to
1060
+ # right. All per-base fields such as `alignedSequence` and `alignedQuality`
1061
+ # share this same left-to-right orientation; this is true of reads which are
1062
+ # aligned to either strand. For reverse-stranded reads, this means that `
1063
+ # alignedSequence` is the reverse complement of the bases that were originally
1064
+ # reported by the sequencing machine. ### Generating a reference-aligned
1065
+ # sequence string When interacting with mapped reads, it's often useful to
1066
+ # produce a string representing the local alignment of the read to reference.
1067
+ # The following pseudocode demonstrates one way of doing this: out = "" offset =
1068
+ # 0 for c in read.alignment.cigar ` switch c.operation ` case "ALIGNMENT_MATCH",
1069
+ # "SEQUENCE_MATCH", "SEQUENCE_MISMATCH": out += read.alignedSequence[offset:
1070
+ # offset+c.operationLength] offset += c.operationLength break case "CLIP_SOFT", "
1071
+ # INSERT": offset += c.operationLength break case "PAD": out += repeat("*", c.
1072
+ # operationLength) break case "DELETE": out += repeat("-", c.operationLength)
1073
+ # break case "SKIP": out += repeat(" ", c.operationLength) break case "CLIP_HARD"
1074
+ # : break ` ` return out ### Converting to SAM's CIGAR string The following
1075
+ # pseudocode generates a SAM CIGAR string from the `cigar` field. Note that this
1076
+ # is a lossy conversion (`cigar.referenceSequence` is lost). cigarMap = ` "
1077
+ # ALIGNMENT_MATCH": "M", "INSERT": "I", "DELETE": "D", "SKIP": "N", "CLIP_SOFT":
1078
+ # "S", "CLIP_HARD": "H", "PAD": "P", "SEQUENCE_MATCH": "=", "SEQUENCE_MISMATCH":
1079
+ # "X", ` cigarStr = "" for c in read.alignment.cigar ` cigarStr += c.
1080
+ # operationLength + cigarMap[c.operation] ` return cigarStr
1081
+ class Read
1082
+ include Google::Apis::Core::Hashable
1083
+
1084
+ # The server-generated read ID, unique across all reads. This is different from
1085
+ # the `fragmentName`.
1086
+ # Corresponds to the JSON property `id`
1087
+ # @return [String]
1088
+ attr_accessor :id
1089
+
1090
+ # The ID of the read group this read belongs to. A read belongs to exactly one
1091
+ # read group. This is a server-generated ID which is distinct from SAM's RG tag (
1092
+ # for that value, see ReadGroup.name).
1093
+ # Corresponds to the JSON property `readGroupId`
1094
+ # @return [String]
1095
+ attr_accessor :read_group_id
1096
+
1097
+ # The ID of the read group set this read belongs to. A read belongs to exactly
1098
+ # one read group set.
1099
+ # Corresponds to the JSON property `readGroupSetId`
1100
+ # @return [String]
1101
+ attr_accessor :read_group_set_id
1102
+
1103
+ # The fragment name. Equivalent to QNAME (query template name) in SAM.
1104
+ # Corresponds to the JSON property `fragmentName`
1105
+ # @return [String]
1106
+ attr_accessor :fragment_name
1107
+
1108
+ # The orientation and the distance between reads from the fragment are
1109
+ # consistent with the sequencing protocol (SAM flag 0x2).
1110
+ # Corresponds to the JSON property `properPlacement`
1111
+ # @return [Boolean]
1112
+ attr_accessor :proper_placement
1113
+ alias_method :proper_placement?, :proper_placement
1114
+
1115
+ # The fragment is a PCR or optical duplicate (SAM flag 0x400).
1116
+ # Corresponds to the JSON property `duplicateFragment`
1117
+ # @return [Boolean]
1118
+ attr_accessor :duplicate_fragment
1119
+ alias_method :duplicate_fragment?, :duplicate_fragment
1120
+
1121
+ # The observed length of the fragment, equivalent to TLEN in SAM.
1122
+ # Corresponds to the JSON property `fragmentLength`
1123
+ # @return [Fixnum]
1124
+ attr_accessor :fragment_length
1125
+
1126
+ # The read number in sequencing. 0-based and less than numberReads. This field
1127
+ # replaces SAM flag 0x40 and 0x80.
1128
+ # Corresponds to the JSON property `readNumber`
1129
+ # @return [Fixnum]
1130
+ attr_accessor :read_number
1131
+
1132
+ # The number of reads in the fragment (extension to SAM flag 0x1).
1133
+ # Corresponds to the JSON property `numberReads`
1134
+ # @return [Fixnum]
1135
+ attr_accessor :number_reads
1136
+
1137
+ # Whether this read did not pass filters, such as platform or vendor quality
1138
+ # controls (SAM flag 0x200).
1139
+ # Corresponds to the JSON property `failedVendorQualityChecks`
1140
+ # @return [Boolean]
1141
+ attr_accessor :failed_vendor_quality_checks
1142
+ alias_method :failed_vendor_quality_checks?, :failed_vendor_quality_checks
1143
+
1144
+ # A linear alignment can be represented by one CIGAR string. Describes the
1145
+ # mapped position and local alignment of the read to the reference.
1146
+ # Corresponds to the JSON property `alignment`
1147
+ # @return [Google::Apis::GenomicsV1::LinearAlignment]
1148
+ attr_accessor :alignment
1149
+
1150
+ # Whether this alignment is secondary. Equivalent to SAM flag 0x100. A secondary
1151
+ # alignment represents an alternative to the primary alignment for this read.
1152
+ # Aligners may return secondary alignments if a read can map ambiguously to
1153
+ # multiple coordinates in the genome. By convention, each read has one and only
1154
+ # one alignment where both `secondaryAlignment` and `supplementaryAlignment` are
1155
+ # false.
1156
+ # Corresponds to the JSON property `secondaryAlignment`
1157
+ # @return [Boolean]
1158
+ attr_accessor :secondary_alignment
1159
+ alias_method :secondary_alignment?, :secondary_alignment
1160
+
1161
+ # Whether this alignment is supplementary. Equivalent to SAM flag 0x800.
1162
+ # Supplementary alignments are used in the representation of a chimeric
1163
+ # alignment. In a chimeric alignment, a read is split into multiple linear
1164
+ # alignments that map to different reference contigs. The first linear alignment
1165
+ # in the read will be designated as the representative alignment; the remaining
1166
+ # linear alignments will be designated as supplementary alignments. These
1167
+ # alignments may have different mapping quality scores. In each linear alignment
1168
+ # in a chimeric alignment, the read will be hard clipped. The `alignedSequence`
1169
+ # and `alignedQuality` fields in the alignment record will only represent the
1170
+ # bases for its respective linear alignment.
1171
+ # Corresponds to the JSON property `supplementaryAlignment`
1172
+ # @return [Boolean]
1173
+ attr_accessor :supplementary_alignment
1174
+ alias_method :supplementary_alignment?, :supplementary_alignment
1175
+
1176
+ # The bases of the read sequence contained in this alignment record, **without
1177
+ # CIGAR operations applied** (equivalent to SEQ in SAM). `alignedSequence` and `
1178
+ # alignedQuality` may be shorter than the full read sequence and quality. This
1179
+ # will occur if the alignment is part of a chimeric alignment, or if the read
1180
+ # was trimmed. When this occurs, the CIGAR for this read will begin/end with a
1181
+ # hard clip operator that will indicate the length of the excised sequence.
1182
+ # Corresponds to the JSON property `alignedSequence`
1183
+ # @return [String]
1184
+ attr_accessor :aligned_sequence
1185
+
1186
+ # The quality of the read sequence contained in this alignment record (
1187
+ # equivalent to QUAL in SAM). `alignedSequence` and `alignedQuality` may be
1188
+ # shorter than the full read sequence and quality. This will occur if the
1189
+ # alignment is part of a chimeric alignment, or if the read was trimmed. When
1190
+ # this occurs, the CIGAR for this read will begin/end with a hard clip operator
1191
+ # that will indicate the length of the excised sequence.
1192
+ # Corresponds to the JSON property `alignedQuality`
1193
+ # @return [Array<Fixnum>]
1194
+ attr_accessor :aligned_quality
1195
+
1196
+ # An abstraction for referring to a genomic position, in relation to some
1197
+ # already known reference. For now, represents a genomic position as a reference
1198
+ # name, a base number on that reference (0-based), and a determination of
1199
+ # forward or reverse strand.
1200
+ # Corresponds to the JSON property `nextMatePosition`
1201
+ # @return [Google::Apis::GenomicsV1::Position]
1202
+ attr_accessor :next_mate_position
1203
+
1204
+ # A map of additional read alignment information. This must be of the form map (
1205
+ # string key mapping to a list of string values).
1206
+ # Corresponds to the JSON property `info`
1207
+ # @return [Hash<String,Array<Object>>]
1208
+ attr_accessor :info
1209
+
1210
+ def initialize(**args)
1211
+ update!(**args)
1212
+ end
1213
+
1214
+ # Update properties of this object
1215
+ def update!(**args)
1216
+ @id = args[:id] unless args[:id].nil?
1217
+ @read_group_id = args[:read_group_id] unless args[:read_group_id].nil?
1218
+ @read_group_set_id = args[:read_group_set_id] unless args[:read_group_set_id].nil?
1219
+ @fragment_name = args[:fragment_name] unless args[:fragment_name].nil?
1220
+ @proper_placement = args[:proper_placement] unless args[:proper_placement].nil?
1221
+ @duplicate_fragment = args[:duplicate_fragment] unless args[:duplicate_fragment].nil?
1222
+ @fragment_length = args[:fragment_length] unless args[:fragment_length].nil?
1223
+ @read_number = args[:read_number] unless args[:read_number].nil?
1224
+ @number_reads = args[:number_reads] unless args[:number_reads].nil?
1225
+ @failed_vendor_quality_checks = args[:failed_vendor_quality_checks] unless args[:failed_vendor_quality_checks].nil?
1226
+ @alignment = args[:alignment] unless args[:alignment].nil?
1227
+ @secondary_alignment = args[:secondary_alignment] unless args[:secondary_alignment].nil?
1228
+ @supplementary_alignment = args[:supplementary_alignment] unless args[:supplementary_alignment].nil?
1229
+ @aligned_sequence = args[:aligned_sequence] unless args[:aligned_sequence].nil?
1230
+ @aligned_quality = args[:aligned_quality] unless args[:aligned_quality].nil?
1231
+ @next_mate_position = args[:next_mate_position] unless args[:next_mate_position].nil?
1232
+ @info = args[:info] unless args[:info].nil?
1233
+ end
1234
+ end
1235
+
1236
+ # A linear alignment can be represented by one CIGAR string. Describes the
1237
+ # mapped position and local alignment of the read to the reference.
1238
+ class LinearAlignment
1239
+ include Google::Apis::Core::Hashable
1240
+
1241
+ # An abstraction for referring to a genomic position, in relation to some
1242
+ # already known reference. For now, represents a genomic position as a reference
1243
+ # name, a base number on that reference (0-based), and a determination of
1244
+ # forward or reverse strand.
1245
+ # Corresponds to the JSON property `position`
1246
+ # @return [Google::Apis::GenomicsV1::Position]
1247
+ attr_accessor :position
1248
+
1249
+ # The mapping quality of this alignment. Represents how likely the read maps to
1250
+ # this position as opposed to other locations. Specifically, this is -10 log10
1251
+ # Pr(mapping position is wrong), rounded to the nearest integer.
1252
+ # Corresponds to the JSON property `mappingQuality`
1253
+ # @return [Fixnum]
1254
+ attr_accessor :mapping_quality
1255
+
1256
+ # Represents the local alignment of this sequence (alignment matches, indels,
1257
+ # etc) against the reference.
1258
+ # Corresponds to the JSON property `cigar`
1259
+ # @return [Array<Google::Apis::GenomicsV1::CigarUnit>]
1260
+ attr_accessor :cigar
1261
+
1262
+ def initialize(**args)
1263
+ update!(**args)
1264
+ end
1265
+
1266
+ # Update properties of this object
1267
+ def update!(**args)
1268
+ @position = args[:position] unless args[:position].nil?
1269
+ @mapping_quality = args[:mapping_quality] unless args[:mapping_quality].nil?
1270
+ @cigar = args[:cigar] unless args[:cigar].nil?
1271
+ end
1272
+ end
1273
+
1274
+ # An abstraction for referring to a genomic position, in relation to some
1275
+ # already known reference. For now, represents a genomic position as a reference
1276
+ # name, a base number on that reference (0-based), and a determination of
1277
+ # forward or reverse strand.
1278
+ class Position
1279
+ include Google::Apis::Core::Hashable
1280
+
1281
+ # The name of the reference in whatever reference set is being used.
1282
+ # Corresponds to the JSON property `referenceName`
1283
+ # @return [String]
1284
+ attr_accessor :reference_name
1285
+
1286
+ # The 0-based offset from the start of the forward strand for that reference.
1287
+ # Corresponds to the JSON property `position`
1288
+ # @return [String]
1289
+ attr_accessor :position
1290
+
1291
+ # Whether this position is on the reverse strand, as opposed to the forward
1292
+ # strand.
1293
+ # Corresponds to the JSON property `reverseStrand`
1294
+ # @return [Boolean]
1295
+ attr_accessor :reverse_strand
1296
+ alias_method :reverse_strand?, :reverse_strand
1297
+
1298
+ def initialize(**args)
1299
+ update!(**args)
1300
+ end
1301
+
1302
+ # Update properties of this object
1303
+ def update!(**args)
1304
+ @reference_name = args[:reference_name] unless args[:reference_name].nil?
1305
+ @position = args[:position] unless args[:position].nil?
1306
+ @reverse_strand = args[:reverse_strand] unless args[:reverse_strand].nil?
1307
+ end
1308
+ end
1309
+
1310
+ # A single CIGAR operation.
1311
+ class CigarUnit
1312
+ include Google::Apis::Core::Hashable
1313
+
1314
+ #
1315
+ # Corresponds to the JSON property `operation`
1316
+ # @return [String]
1317
+ attr_accessor :operation
1318
+
1319
+ # The number of genomic bases that the operation runs for. Required.
1320
+ # Corresponds to the JSON property `operationLength`
1321
+ # @return [String]
1322
+ attr_accessor :operation_length
1323
+
1324
+ # `referenceSequence` is only used at mismatches (`SEQUENCE_MISMATCH`) and
1325
+ # deletions (`DELETE`). Filling this field replaces SAM's MD tag. If the
1326
+ # relevant information is not available, this field is unset.
1327
+ # Corresponds to the JSON property `referenceSequence`
1328
+ # @return [String]
1329
+ attr_accessor :reference_sequence
1330
+
1331
+ def initialize(**args)
1332
+ update!(**args)
1333
+ end
1334
+
1335
+ # Update properties of this object
1336
+ def update!(**args)
1337
+ @operation = args[:operation] unless args[:operation].nil?
1338
+ @operation_length = args[:operation_length] unless args[:operation_length].nil?
1339
+ @reference_sequence = args[:reference_sequence] unless args[:reference_sequence].nil?
1340
+ end
1341
+ end
1342
+
1343
+ # The stream reads request.
1344
+ class StreamReadsRequest
1345
+ include Google::Apis::Core::Hashable
1346
+
1347
+ # The Google Developers Console project ID or number which will be billed for
1348
+ # this access. The caller must have WRITE access to this project. Required.
1349
+ # Corresponds to the JSON property `projectId`
1350
+ # @return [String]
1351
+ attr_accessor :project_id
1352
+
1353
+ # The ID of the read group set from which to stream reads.
1354
+ # Corresponds to the JSON property `readGroupSetId`
1355
+ # @return [String]
1356
+ attr_accessor :read_group_set_id
1357
+
1358
+ # The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to *,
1359
+ # only unmapped reads are returned.
1360
+ # Corresponds to the JSON property `referenceName`
1361
+ # @return [String]
1362
+ attr_accessor :reference_name
1363
+
1364
+ # The start position of the range on the reference, 0-based inclusive. If
1365
+ # specified, `referenceName` must also be specified.
1366
+ # Corresponds to the JSON property `start`
1367
+ # @return [String]
1368
+ attr_accessor :start
1369
+
1370
+ # The end position of the range on the reference, 0-based exclusive. If
1371
+ # specified, `referenceName` must also be specified.
1372
+ # Corresponds to the JSON property `end`
1373
+ # @return [String]
1374
+ attr_accessor :end
1375
+
1376
+ def initialize(**args)
1377
+ update!(**args)
1378
+ end
1379
+
1380
+ # Update properties of this object
1381
+ def update!(**args)
1382
+ @project_id = args[:project_id] unless args[:project_id].nil?
1383
+ @read_group_set_id = args[:read_group_set_id] unless args[:read_group_set_id].nil?
1384
+ @reference_name = args[:reference_name] unless args[:reference_name].nil?
1385
+ @start = args[:start] unless args[:start].nil?
1386
+ @end = args[:end] unless args[:end].nil?
1387
+ end
1388
+ end
1389
+
1390
+ #
1391
+ class StreamReadsResponse
1392
+ include Google::Apis::Core::Hashable
1393
+
1394
+ #
1395
+ # Corresponds to the JSON property `alignments`
1396
+ # @return [Array<Google::Apis::GenomicsV1::Read>]
1397
+ attr_accessor :alignments
1398
+
1399
+ def initialize(**args)
1400
+ update!(**args)
1401
+ end
1402
+
1403
+ # Update properties of this object
1404
+ def update!(**args)
1405
+ @alignments = args[:alignments] unless args[:alignments].nil?
1406
+ end
1407
+ end
1408
+
1409
+ #
1410
+ class SearchReferenceSetsRequest
1411
+ include Google::Apis::Core::Hashable
1412
+
1413
+ # If present, return reference sets for which the md5checksum matches exactly.
1414
+ # Corresponds to the JSON property `md5checksums`
1415
+ # @return [Array<String>]
1416
+ attr_accessor :md5checksums
1417
+
1418
+ # If present, return reference sets for which a prefix of any of
1419
+ # sourceAccessions match any of these strings. Accession numbers typically have
1420
+ # a main number and a version, for example `NC_000001.11`.
1421
+ # Corresponds to the JSON property `accessions`
1422
+ # @return [Array<String>]
1423
+ attr_accessor :accessions
1424
+
1425
+ # If present, return reference sets for which a substring of their `assemblyId`
1426
+ # matches this string (case insensitive).
1427
+ # Corresponds to the JSON property `assemblyId`
1428
+ # @return [String]
1429
+ attr_accessor :assembly_id
1430
+
1431
+ # The continuation token, which is used to page through large result sets. To
1432
+ # get the next page of results, set this parameter to the value of `
1433
+ # nextPageToken` from the previous response.
1434
+ # Corresponds to the JSON property `pageToken`
1435
+ # @return [String]
1436
+ attr_accessor :page_token
1437
+
1438
+ # The maximum number of results to return in a single page. If unspecified,
1439
+ # defaults to 1024. The maximum value is 4096.
1440
+ # Corresponds to the JSON property `pageSize`
1441
+ # @return [Fixnum]
1442
+ attr_accessor :page_size
1443
+
1444
+ def initialize(**args)
1445
+ update!(**args)
1446
+ end
1447
+
1448
+ # Update properties of this object
1449
+ def update!(**args)
1450
+ @md5checksums = args[:md5checksums] unless args[:md5checksums].nil?
1451
+ @accessions = args[:accessions] unless args[:accessions].nil?
1452
+ @assembly_id = args[:assembly_id] unless args[:assembly_id].nil?
1453
+ @page_token = args[:page_token] unless args[:page_token].nil?
1454
+ @page_size = args[:page_size] unless args[:page_size].nil?
1455
+ end
1456
+ end
1457
+
1458
+ #
1459
+ class SearchReferenceSetsResponse
1460
+ include Google::Apis::Core::Hashable
1461
+
1462
+ # The matching references sets.
1463
+ # Corresponds to the JSON property `referenceSets`
1464
+ # @return [Array<Google::Apis::GenomicsV1::ReferenceSet>]
1465
+ attr_accessor :reference_sets
1466
+
1467
+ # The continuation token, which is used to page through large result sets.
1468
+ # Provide this value in a subsequent request to return the next page of results.
1469
+ # This field will be empty if there aren't any additional results.
1470
+ # Corresponds to the JSON property `nextPageToken`
1471
+ # @return [String]
1472
+ attr_accessor :next_page_token
1473
+
1474
+ def initialize(**args)
1475
+ update!(**args)
1476
+ end
1477
+
1478
+ # Update properties of this object
1479
+ def update!(**args)
1480
+ @reference_sets = args[:reference_sets] unless args[:reference_sets].nil?
1481
+ @next_page_token = args[:next_page_token] unless args[:next_page_token].nil?
1482
+ end
1483
+ end
1484
+
1485
+ # A reference set is a set of references which typically comprise a reference
1486
+ # assembly for a species, such as `GRCh38` which is representative of the human
1487
+ # genome. A reference set defines a common coordinate space for comparing
1488
+ # reference-aligned experimental data. A reference set contains 1 or more
1489
+ # references. For more genomics resource definitions, see [Fundamentals of
1490
+ # Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
1491
+ # genomics)
1492
+ class ReferenceSet
1493
+ include Google::Apis::Core::Hashable
1494
+
1495
+ # The server-generated reference set ID, unique across all reference sets.
1496
+ # Corresponds to the JSON property `id`
1497
+ # @return [String]
1498
+ attr_accessor :id
1499
+
1500
+ # The IDs of the reference objects that are part of this set. `Reference.
1501
+ # md5checksum` must be unique within this set.
1502
+ # Corresponds to the JSON property `referenceIds`
1503
+ # @return [Array<String>]
1504
+ attr_accessor :reference_ids
1505
+
1506
+ # Order-independent MD5 checksum which identifies this reference set. The
1507
+ # checksum is computed by sorting all lower case hexidecimal string `reference.
1508
+ # md5checksum` (for all reference in this set) in ascending lexicographic order,
1509
+ # concatenating, and taking the MD5 of that value. The resulting value is
1510
+ # represented in lower case hexadecimal format.
1511
+ # Corresponds to the JSON property `md5checksum`
1512
+ # @return [String]
1513
+ attr_accessor :md5checksum
1514
+
1515
+ # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
1516
+ # indicating the species which this reference set is intended to model. Note
1517
+ # that contained references may specify a different `ncbiTaxonId`, as assemblies
1518
+ # may contain reference sequences which do not belong to the modeled species,
1519
+ # for example EBV in a human reference genome.
1520
+ # Corresponds to the JSON property `ncbiTaxonId`
1521
+ # @return [Fixnum]
1522
+ attr_accessor :ncbi_taxon_id
1523
+
1524
+ # Free text description of this reference set.
1525
+ # Corresponds to the JSON property `description`
1526
+ # @return [String]
1527
+ attr_accessor :description
1528
+
1529
+ # Public id of this reference set, such as `GRCh37`.
1530
+ # Corresponds to the JSON property `assemblyId`
1531
+ # @return [String]
1532
+ attr_accessor :assembly_id
1533
+
1534
+ # The URI from which the references were obtained.
1535
+ # Corresponds to the JSON property `sourceUri`
1536
+ # @return [String]
1537
+ attr_accessor :source_uri
1538
+
1539
+ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with
1540
+ # a version number, for example `NC_000001.11`.
1541
+ # Corresponds to the JSON property `sourceAccessions`
1542
+ # @return [Array<String>]
1543
+ attr_accessor :source_accessions
1544
+
1545
+ def initialize(**args)
1546
+ update!(**args)
1547
+ end
1548
+
1549
+ # Update properties of this object
1550
+ def update!(**args)
1551
+ @id = args[:id] unless args[:id].nil?
1552
+ @reference_ids = args[:reference_ids] unless args[:reference_ids].nil?
1553
+ @md5checksum = args[:md5checksum] unless args[:md5checksum].nil?
1554
+ @ncbi_taxon_id = args[:ncbi_taxon_id] unless args[:ncbi_taxon_id].nil?
1555
+ @description = args[:description] unless args[:description].nil?
1556
+ @assembly_id = args[:assembly_id] unless args[:assembly_id].nil?
1557
+ @source_uri = args[:source_uri] unless args[:source_uri].nil?
1558
+ @source_accessions = args[:source_accessions] unless args[:source_accessions].nil?
1559
+ end
1560
+ end
1561
+
1562
+ #
1563
+ class SearchReferencesRequest
1564
+ include Google::Apis::Core::Hashable
1565
+
1566
+ # If present, return references for which the md5checksum matches exactly.
1567
+ # Corresponds to the JSON property `md5checksums`
1568
+ # @return [Array<String>]
1569
+ attr_accessor :md5checksums
1570
+
1571
+ # If present, return references for which a prefix of any of sourceAccessions
1572
+ # match any of these strings. Accession numbers typically have a main number and
1573
+ # a version, for example `GCF_000001405.26`.
1574
+ # Corresponds to the JSON property `accessions`
1575
+ # @return [Array<String>]
1576
+ attr_accessor :accessions
1577
+
1578
+ # If present, return only references which belong to this reference set.
1579
+ # Corresponds to the JSON property `referenceSetId`
1580
+ # @return [String]
1581
+ attr_accessor :reference_set_id
1582
+
1583
+ # The continuation token, which is used to page through large result sets. To
1584
+ # get the next page of results, set this parameter to the value of `
1585
+ # nextPageToken` from the previous response.
1586
+ # Corresponds to the JSON property `pageToken`
1587
+ # @return [String]
1588
+ attr_accessor :page_token
1589
+
1590
+ # The maximum number of results to return in a single page. If unspecified,
1591
+ # defaults to 1024. The maximum value is 4096.
1592
+ # Corresponds to the JSON property `pageSize`
1593
+ # @return [Fixnum]
1594
+ attr_accessor :page_size
1595
+
1596
+ def initialize(**args)
1597
+ update!(**args)
1598
+ end
1599
+
1600
+ # Update properties of this object
1601
+ def update!(**args)
1602
+ @md5checksums = args[:md5checksums] unless args[:md5checksums].nil?
1603
+ @accessions = args[:accessions] unless args[:accessions].nil?
1604
+ @reference_set_id = args[:reference_set_id] unless args[:reference_set_id].nil?
1605
+ @page_token = args[:page_token] unless args[:page_token].nil?
1606
+ @page_size = args[:page_size] unless args[:page_size].nil?
1607
+ end
1608
+ end
1609
+
1610
+ #
1611
+ class SearchReferencesResponse
1612
+ include Google::Apis::Core::Hashable
1613
+
1614
+ # The matching references.
1615
+ # Corresponds to the JSON property `references`
1616
+ # @return [Array<Google::Apis::GenomicsV1::Reference>]
1617
+ attr_accessor :references
1618
+
1619
+ # The continuation token, which is used to page through large result sets.
1620
+ # Provide this value in a subsequent request to return the next page of results.
1621
+ # This field will be empty if there aren't any additional results.
1622
+ # Corresponds to the JSON property `nextPageToken`
1623
+ # @return [String]
1624
+ attr_accessor :next_page_token
1625
+
1626
+ def initialize(**args)
1627
+ update!(**args)
1628
+ end
1629
+
1630
+ # Update properties of this object
1631
+ def update!(**args)
1632
+ @references = args[:references] unless args[:references].nil?
1633
+ @next_page_token = args[:next_page_token] unless args[:next_page_token].nil?
1634
+ end
1635
+ end
1636
+
1637
+ # A reference is a canonical assembled DNA sequence, intended to act as a
1638
+ # reference coordinate space for other genomic annotations. A single reference
1639
+ # might represent the human chromosome 1 or mitochandrial DNA, for instance. A
1640
+ # reference belongs to one or more reference sets. For more genomics resource
1641
+ # definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/
1642
+ # genomics/fundamentals-of-google-genomics)
1643
+ class Reference
1644
+ include Google::Apis::Core::Hashable
1645
+
1646
+ # The server-generated reference ID, unique across all references.
1647
+ # Corresponds to the JSON property `id`
1648
+ # @return [String]
1649
+ attr_accessor :id
1650
+
1651
+ # The length of this reference's sequence.
1652
+ # Corresponds to the JSON property `length`
1653
+ # @return [String]
1654
+ attr_accessor :length
1655
+
1656
+ # MD5 of the upper-case sequence excluding all whitespace characters (this is
1657
+ # equivalent to SQ:M5 in SAM). This value is represented in lower case
1658
+ # hexadecimal format.
1659
+ # Corresponds to the JSON property `md5checksum`
1660
+ # @return [String]
1661
+ attr_accessor :md5checksum
1662
+
1663
+ # The name of this reference, for example `22`.
1664
+ # Corresponds to the JSON property `name`
1665
+ # @return [String]
1666
+ attr_accessor :name
1667
+
1668
+ # The URI from which the sequence was obtained. Typically specifies a FASTA
1669
+ # format file.
1670
+ # Corresponds to the JSON property `sourceUri`
1671
+ # @return [String]
1672
+ attr_accessor :source_uri
1673
+
1674
+ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with
1675
+ # a version number, for example `GCF_000001405.26`.
1676
+ # Corresponds to the JSON property `sourceAccessions`
1677
+ # @return [Array<String>]
1678
+ attr_accessor :source_accessions
1679
+
1680
+ # ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
1681
+ # Corresponds to the JSON property `ncbiTaxonId`
1682
+ # @return [Fixnum]
1683
+ attr_accessor :ncbi_taxon_id
1684
+
1685
+ def initialize(**args)
1686
+ update!(**args)
1687
+ end
1688
+
1689
+ # Update properties of this object
1690
+ def update!(**args)
1691
+ @id = args[:id] unless args[:id].nil?
1692
+ @length = args[:length] unless args[:length].nil?
1693
+ @md5checksum = args[:md5checksum] unless args[:md5checksum].nil?
1694
+ @name = args[:name] unless args[:name].nil?
1695
+ @source_uri = args[:source_uri] unless args[:source_uri].nil?
1696
+ @source_accessions = args[:source_accessions] unless args[:source_accessions].nil?
1697
+ @ncbi_taxon_id = args[:ncbi_taxon_id] unless args[:ncbi_taxon_id].nil?
1698
+ end
1699
+ end
1700
+
1701
+ #
1702
+ class ListBasesResponse
1703
+ include Google::Apis::Core::Hashable
1704
+
1705
+ # The offset position (0-based) of the given `sequence` from the start of this `
1706
+ # Reference`. This value will differ for each page in a paginated request.
1707
+ # Corresponds to the JSON property `offset`
1708
+ # @return [String]
1709
+ attr_accessor :offset
1710
+
1711
+ # A substring of the bases that make up this reference.
1712
+ # Corresponds to the JSON property `sequence`
1713
+ # @return [String]
1714
+ attr_accessor :sequence
1715
+
1716
+ # The continuation token, which is used to page through large result sets.
1717
+ # Provide this value in a subsequent request to return the next page of results.
1718
+ # This field will be empty if there aren't any additional results.
1719
+ # Corresponds to the JSON property `nextPageToken`
1720
+ # @return [String]
1721
+ attr_accessor :next_page_token
1722
+
1723
+ def initialize(**args)
1724
+ update!(**args)
1725
+ end
1726
+
1727
+ # Update properties of this object
1728
+ def update!(**args)
1729
+ @offset = args[:offset] unless args[:offset].nil?
1730
+ @sequence = args[:sequence] unless args[:sequence].nil?
1731
+ @next_page_token = args[:next_page_token] unless args[:next_page_token].nil?
1732
+ end
1733
+ end
1734
+
1735
+ # The variant data import request.
1736
+ class ImportVariantsRequest
1737
+ include Google::Apis::Core::Hashable
1738
+
1739
+ # Required. The variant set to which variant data should be imported.
1740
+ # Corresponds to the JSON property `variantSetId`
1741
+ # @return [String]
1742
+ attr_accessor :variant_set_id
1743
+
1744
+ # A list of URIs referencing variant files in Google Cloud Storage. URIs can
1745
+ # include wildcards [as described here](https://cloud.google.com/storage/docs/
1746
+ # gsutil/addlhelp/WildcardNames). Note that recursive wildcards ('**') are not
1747
+ # supported.
1748
+ # Corresponds to the JSON property `sourceUris`
1749
+ # @return [Array<String>]
1750
+ attr_accessor :source_uris
1751
+
1752
+ # The format of the variant data being imported. If unspecified, defaults to to `
1753
+ # VCF`.
1754
+ # Corresponds to the JSON property `format`
1755
+ # @return [String]
1756
+ attr_accessor :format
1757
+
1758
+ # Convert reference names to the canonical representation. hg19 haploytypes (
1759
+ # those reference names containing "_hap") are not modified in any way. All
1760
+ # other reference names are modified according to the following rules: The
1761
+ # reference name is capitalized. The "chr" prefix is dropped for all autosomes
1762
+ # and sex chromsomes. For example "chr17" becomes "17" and "chrX" becomes "X".
1763
+ # All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
1764
+ # Corresponds to the JSON property `normalizeReferenceNames`
1765
+ # @return [Boolean]
1766
+ attr_accessor :normalize_reference_names
1767
+ alias_method :normalize_reference_names?, :normalize_reference_names
1768
+
1769
+ def initialize(**args)
1770
+ update!(**args)
1771
+ end
1772
+
1773
+ # Update properties of this object
1774
+ def update!(**args)
1775
+ @variant_set_id = args[:variant_set_id] unless args[:variant_set_id].nil?
1776
+ @source_uris = args[:source_uris] unless args[:source_uris].nil?
1777
+ @format = args[:format] unless args[:format].nil?
1778
+ @normalize_reference_names = args[:normalize_reference_names] unless args[:normalize_reference_names].nil?
1779
+ end
1780
+ end
1781
+
1782
+ # A variant set is a collection of call sets and variants. It contains summary
1783
+ # statistics of those contents. A variant set belongs to a dataset. For more
1784
+ # genomics resource definitions, see [Fundamentals of Google Genomics](https://
1785
+ # cloud.google.com/genomics/fundamentals-of-google-genomics)
1786
+ class VariantSet
1787
+ include Google::Apis::Core::Hashable
1788
+
1789
+ # The dataset to which this variant set belongs.
1790
+ # Corresponds to the JSON property `datasetId`
1791
+ # @return [String]
1792
+ attr_accessor :dataset_id
1793
+
1794
+ # The server-generated variant set ID, unique across all variant sets.
1795
+ # Corresponds to the JSON property `id`
1796
+ # @return [String]
1797
+ attr_accessor :id
1798
+
1799
+ # The reference set to which the variant set is mapped. The reference set
1800
+ # describes the alignment provenance of the variant set, while the `
1801
+ # referenceBounds` describe the shape of the actual variant data. The reference
1802
+ # set's reference names are a superset of those found in the `referenceBounds`.
1803
+ # For example, given a variant set that is mapped to the GRCh38 reference set
1804
+ # and contains a single variant on reference 'X', `referenceBounds` would
1805
+ # contain only an entry for 'X', while the associated reference set enumerates
1806
+ # all possible references: '1', '2', 'X', 'Y', 'MT', etc.
1807
+ # Corresponds to the JSON property `referenceSetId`
1808
+ # @return [String]
1809
+ attr_accessor :reference_set_id
1810
+
1811
+ # A list of all references used by the variants in a variant set with associated
1812
+ # coordinate upper bounds for each one.
1813
+ # Corresponds to the JSON property `referenceBounds`
1814
+ # @return [Array<Google::Apis::GenomicsV1::ReferenceBound>]
1815
+ attr_accessor :reference_bounds
1816
+
1817
+ # The metadata associated with this variant set.
1818
+ # Corresponds to the JSON property `metadata`
1819
+ # @return [Array<Google::Apis::GenomicsV1::VariantSetMetadata>]
1820
+ attr_accessor :metadata
1821
+
1822
+ def initialize(**args)
1823
+ update!(**args)
1824
+ end
1825
+
1826
+ # Update properties of this object
1827
+ def update!(**args)
1828
+ @dataset_id = args[:dataset_id] unless args[:dataset_id].nil?
1829
+ @id = args[:id] unless args[:id].nil?
1830
+ @reference_set_id = args[:reference_set_id] unless args[:reference_set_id].nil?
1831
+ @reference_bounds = args[:reference_bounds] unless args[:reference_bounds].nil?
1832
+ @metadata = args[:metadata] unless args[:metadata].nil?
1833
+ end
1834
+ end
1835
+
1836
+ # ReferenceBound records an upper bound for the starting coordinate of variants
1837
+ # in a particular reference.
1838
+ class ReferenceBound
1839
+ include Google::Apis::Core::Hashable
1840
+
1841
+ # The name of the reference associated with this ReferenceBound.
1842
+ # Corresponds to the JSON property `referenceName`
1843
+ # @return [String]
1844
+ attr_accessor :reference_name
1845
+
1846
+ # An upper bound (inclusive) on the starting coordinate of any variant in the
1847
+ # reference sequence.
1848
+ # Corresponds to the JSON property `upperBound`
1849
+ # @return [String]
1850
+ attr_accessor :upper_bound
1851
+
1852
+ def initialize(**args)
1853
+ update!(**args)
1854
+ end
1855
+
1856
+ # Update properties of this object
1857
+ def update!(**args)
1858
+ @reference_name = args[:reference_name] unless args[:reference_name].nil?
1859
+ @upper_bound = args[:upper_bound] unless args[:upper_bound].nil?
1860
+ end
1861
+ end
1862
+
1863
+ # Metadata describes a single piece of variant call metadata. These data include
1864
+ # a top level key and either a single value string (value) or a list of key-
1865
+ # value pairs (info.) Value and info are mutually exclusive.
1866
+ class VariantSetMetadata
1867
+ include Google::Apis::Core::Hashable
1868
+
1869
+ # The top-level key.
1870
+ # Corresponds to the JSON property `key`
1871
+ # @return [String]
1872
+ attr_accessor :key
1873
+
1874
+ # The value field for simple metadata
1875
+ # Corresponds to the JSON property `value`
1876
+ # @return [String]
1877
+ attr_accessor :value
1878
+
1879
+ # User-provided ID field, not enforced by this API. Two or more pieces of
1880
+ # structured metadata with identical id and key fields are considered equivalent.
1881
+ # Corresponds to the JSON property `id`
1882
+ # @return [String]
1883
+ attr_accessor :id
1884
+
1885
+ # The type of data. Possible types include: Integer, Float, Flag, Character, and
1886
+ # String.
1887
+ # Corresponds to the JSON property `type`
1888
+ # @return [String]
1889
+ attr_accessor :type
1890
+
1891
+ # The number of values that can be included in a field described by this
1892
+ # metadata.
1893
+ # Corresponds to the JSON property `number`
1894
+ # @return [String]
1895
+ attr_accessor :number
1896
+
1897
+ # A textual description of this metadata.
1898
+ # Corresponds to the JSON property `description`
1899
+ # @return [String]
1900
+ attr_accessor :description
1901
+
1902
+ # Remaining structured metadata key-value pairs. This must be of the form map (
1903
+ # string key mapping to a list of string values).
1904
+ # Corresponds to the JSON property `info`
1905
+ # @return [Hash<String,Array<Object>>]
1906
+ attr_accessor :info
1907
+
1908
+ def initialize(**args)
1909
+ update!(**args)
1910
+ end
1911
+
1912
+ # Update properties of this object
1913
+ def update!(**args)
1914
+ @key = args[:key] unless args[:key].nil?
1915
+ @value = args[:value] unless args[:value].nil?
1916
+ @id = args[:id] unless args[:id].nil?
1917
+ @type = args[:type] unless args[:type].nil?
1918
+ @number = args[:number] unless args[:number].nil?
1919
+ @description = args[:description] unless args[:description].nil?
1920
+ @info = args[:info] unless args[:info].nil?
1921
+ end
1922
+ end
1923
+
1924
+ # The variant data export request.
1925
+ class ExportVariantSetRequest
1926
+ include Google::Apis::Core::Hashable
1927
+
1928
+ # If provided, only variant call information from the specified call sets will
1929
+ # be exported. By default all variant calls are exported.
1930
+ # Corresponds to the JSON property `callSetIds`
1931
+ # @return [Array<String>]
1932
+ attr_accessor :call_set_ids
1933
+
1934
+ # Required. The Google Cloud project ID that owns the destination BigQuery
1935
+ # dataset. The caller must have WRITE access to this project. This project will
1936
+ # also own the resulting export job.
1937
+ # Corresponds to the JSON property `projectId`
1938
+ # @return [String]
1939
+ attr_accessor :project_id
1940
+
1941
+ # The format for the exported data.
1942
+ # Corresponds to the JSON property `format`
1943
+ # @return [String]
1944
+ attr_accessor :format
1945
+
1946
+ # Required. The BigQuery dataset to export data to. This dataset must already
1947
+ # exist. Note that this is distinct from the Genomics concept of "dataset".
1948
+ # Corresponds to the JSON property `bigqueryDataset`
1949
+ # @return [String]
1950
+ attr_accessor :bigquery_dataset
1951
+
1952
+ # Required. The BigQuery table to export data to. If the table doesn't exist, it
1953
+ # will be created. If it already exists, it will be overwritten.
1954
+ # Corresponds to the JSON property `bigqueryTable`
1955
+ # @return [String]
1956
+ attr_accessor :bigquery_table
1957
+
1958
+ def initialize(**args)
1959
+ update!(**args)
1960
+ end
1961
+
1962
+ # Update properties of this object
1963
+ def update!(**args)
1964
+ @call_set_ids = args[:call_set_ids] unless args[:call_set_ids].nil?
1965
+ @project_id = args[:project_id] unless args[:project_id].nil?
1966
+ @format = args[:format] unless args[:format].nil?
1967
+ @bigquery_dataset = args[:bigquery_dataset] unless args[:bigquery_dataset].nil?
1968
+ @bigquery_table = args[:bigquery_table] unless args[:bigquery_table].nil?
1969
+ end
1970
+ end
1971
+
1972
+ # The search variant sets request.
1973
+ class SearchVariantSetsRequest
1974
+ include Google::Apis::Core::Hashable
1975
+
1976
+ # Exactly one dataset ID must be provided here. Only variant sets which belong
1977
+ # to this dataset will be returned.
1978
+ # Corresponds to the JSON property `datasetIds`
1979
+ # @return [Array<String>]
1980
+ attr_accessor :dataset_ids
1981
+
1982
+ # The continuation token, which is used to page through large result sets. To
1983
+ # get the next page of results, set this parameter to the value of `
1984
+ # nextPageToken` from the previous response.
1985
+ # Corresponds to the JSON property `pageToken`
1986
+ # @return [String]
1987
+ attr_accessor :page_token
1988
+
1989
+ # The maximum number of results to return in a single page. If unspecified,
1990
+ # defaults to 1024.
1991
+ # Corresponds to the JSON property `pageSize`
1992
+ # @return [Fixnum]
1993
+ attr_accessor :page_size
1994
+
1995
+ def initialize(**args)
1996
+ update!(**args)
1997
+ end
1998
+
1999
+ # Update properties of this object
2000
+ def update!(**args)
2001
+ @dataset_ids = args[:dataset_ids] unless args[:dataset_ids].nil?
2002
+ @page_token = args[:page_token] unless args[:page_token].nil?
2003
+ @page_size = args[:page_size] unless args[:page_size].nil?
2004
+ end
2005
+ end
2006
+
2007
+ # The search variant sets response.
2008
+ class SearchVariantSetsResponse
2009
+ include Google::Apis::Core::Hashable
2010
+
2011
+ # The variant sets belonging to the requested dataset.
2012
+ # Corresponds to the JSON property `variantSets`
2013
+ # @return [Array<Google::Apis::GenomicsV1::VariantSet>]
2014
+ attr_accessor :variant_sets
2015
+
2016
+ # The continuation token, which is used to page through large result sets.
2017
+ # Provide this value in a subsequent request to return the next page of results.
2018
+ # This field will be empty if there aren't any additional results.
2019
+ # Corresponds to the JSON property `nextPageToken`
2020
+ # @return [String]
2021
+ attr_accessor :next_page_token
2022
+
2023
+ def initialize(**args)
2024
+ update!(**args)
2025
+ end
2026
+
2027
+ # Update properties of this object
2028
+ def update!(**args)
2029
+ @variant_sets = args[:variant_sets] unless args[:variant_sets].nil?
2030
+ @next_page_token = args[:next_page_token] unless args[:next_page_token].nil?
2031
+ end
2032
+ end
2033
+
2034
+ # The variant search request.
2035
+ class SearchVariantsRequest
2036
+ include Google::Apis::Core::Hashable
2037
+
2038
+ # At most one variant set ID must be provided. Only variants from this variant
2039
+ # set will be returned. If omitted, a call set id must be included in the
2040
+ # request.
2041
+ # Corresponds to the JSON property `variantSetIds`
2042
+ # @return [Array<String>]
2043
+ attr_accessor :variant_set_ids
2044
+
2045
+ # Only return variants which have exactly this name.
2046
+ # Corresponds to the JSON property `variantName`
2047
+ # @return [String]
2048
+ attr_accessor :variant_name
2049
+
2050
+ # Only return variant calls which belong to call sets with these ids. Leaving
2051
+ # this blank returns all variant calls. If a variant has no calls belonging to
2052
+ # any of these call sets, it won't be returned at all. Currently, variants with
2053
+ # no calls from any call set will never be returned.
2054
+ # Corresponds to the JSON property `callSetIds`
2055
+ # @return [Array<String>]
2056
+ attr_accessor :call_set_ids
2057
+
2058
+ # Required. Only return variants in this reference sequence.
2059
+ # Corresponds to the JSON property `referenceName`
2060
+ # @return [String]
2061
+ attr_accessor :reference_name
2062
+
2063
+ # The beginning of the window (0-based, inclusive) for which overlapping
2064
+ # variants should be returned. If unspecified, defaults to 0.
2065
+ # Corresponds to the JSON property `start`
2066
+ # @return [String]
2067
+ attr_accessor :start
2068
+
2069
+ # The end of the window, 0-based exclusive. If unspecified or 0, defaults to the
2070
+ # length of the reference.
2071
+ # Corresponds to the JSON property `end`
2072
+ # @return [String]
2073
+ attr_accessor :end
2074
+
2075
+ # The continuation token, which is used to page through large result sets. To
2076
+ # get the next page of results, set this parameter to the value of `
2077
+ # nextPageToken` from the previous response.
2078
+ # Corresponds to the JSON property `pageToken`
2079
+ # @return [String]
2080
+ attr_accessor :page_token
2081
+
2082
+ # The maximum number of variants to return in a single page. If unspecified,
2083
+ # defaults to 5000. The maximum value is 10000.
2084
+ # Corresponds to the JSON property `pageSize`
2085
+ # @return [Fixnum]
2086
+ attr_accessor :page_size
2087
+
2088
+ # The maximum number of calls to return in a single page. Note that this limit
2089
+ # may be exceeded; at least one variant is always returned per page, even if it
2090
+ # has more calls than this limit. If unspecified, defaults to 5000. The maximum
2091
+ # value is 10000.
2092
+ # Corresponds to the JSON property `maxCalls`
2093
+ # @return [Fixnum]
2094
+ attr_accessor :max_calls
2095
+
2096
+ def initialize(**args)
2097
+ update!(**args)
2098
+ end
2099
+
2100
+ # Update properties of this object
2101
+ def update!(**args)
2102
+ @variant_set_ids = args[:variant_set_ids] unless args[:variant_set_ids].nil?
2103
+ @variant_name = args[:variant_name] unless args[:variant_name].nil?
2104
+ @call_set_ids = args[:call_set_ids] unless args[:call_set_ids].nil?
2105
+ @reference_name = args[:reference_name] unless args[:reference_name].nil?
2106
+ @start = args[:start] unless args[:start].nil?
2107
+ @end = args[:end] unless args[:end].nil?
2108
+ @page_token = args[:page_token] unless args[:page_token].nil?
2109
+ @page_size = args[:page_size] unless args[:page_size].nil?
2110
+ @max_calls = args[:max_calls] unless args[:max_calls].nil?
2111
+ end
2112
+ end
2113
+
2114
+ # The variant search response.
2115
+ class SearchVariantsResponse
2116
+ include Google::Apis::Core::Hashable
2117
+
2118
+ # The list of matching Variants.
2119
+ # Corresponds to the JSON property `variants`
2120
+ # @return [Array<Google::Apis::GenomicsV1::Variant>]
2121
+ attr_accessor :variants
2122
+
2123
+ # The continuation token, which is used to page through large result sets.
2124
+ # Provide this value in a subsequent request to return the next page of results.
2125
+ # This field will be empty if there aren't any additional results.
2126
+ # Corresponds to the JSON property `nextPageToken`
2127
+ # @return [String]
2128
+ attr_accessor :next_page_token
2129
+
2130
+ def initialize(**args)
2131
+ update!(**args)
2132
+ end
2133
+
2134
+ # Update properties of this object
2135
+ def update!(**args)
2136
+ @variants = args[:variants] unless args[:variants].nil?
2137
+ @next_page_token = args[:next_page_token] unless args[:next_page_token].nil?
2138
+ end
2139
+ end
2140
+
2141
+ # A variant represents a change in DNA sequence relative to a reference sequence.
2142
+ # For example, a variant could represent a SNP or an insertion. Variants belong
2143
+ # to a variant set. For more genomics resource definitions, see [Fundamentals of
2144
+ # Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-
2145
+ # genomics) Each of the calls on a variant represent a determination of genotype
2146
+ # with respect to that variant. For example, a call might assign probability of
2147
+ # 0.32 to the occurrence of a SNP named rs1234 in a sample named NA12345. A call
2148
+ # belongs to a call set, which contains related calls typically from one sample.
2149
+ class Variant
2150
+ include Google::Apis::Core::Hashable
2151
+
2152
+ # The ID of the variant set this variant belongs to.
2153
+ # Corresponds to the JSON property `variantSetId`
2154
+ # @return [String]
2155
+ attr_accessor :variant_set_id
2156
+
2157
+ # The server-generated variant ID, unique across all variants.
2158
+ # Corresponds to the JSON property `id`
2159
+ # @return [String]
2160
+ attr_accessor :id
2161
+
2162
+ # Names for the variant, for example a RefSNP ID.
2163
+ # Corresponds to the JSON property `names`
2164
+ # @return [Array<String>]
2165
+ attr_accessor :names
2166
+
2167
+ # The date this variant was created, in milliseconds from the epoch.
2168
+ # Corresponds to the JSON property `created`
2169
+ # @return [String]
2170
+ attr_accessor :created
2171
+
2172
+ # The reference on which this variant occurs. (such as `chr20` or `X`)
2173
+ # Corresponds to the JSON property `referenceName`
2174
+ # @return [String]
2175
+ attr_accessor :reference_name
2176
+
2177
+ # The position at which this variant occurs (0-based). This corresponds to the
2178
+ # first base of the string of reference bases.
2179
+ # Corresponds to the JSON property `start`
2180
+ # @return [String]
2181
+ attr_accessor :start
2182
+
2183
+ # The end position (0-based) of this variant. This corresponds to the first base
2184
+ # after the last base in the reference allele. So, the length of the reference
2185
+ # allele is (end - start). This is useful for variants that don't explicitly
2186
+ # give alternate bases, for example large deletions.
2187
+ # Corresponds to the JSON property `end`
2188
+ # @return [String]
2189
+ attr_accessor :end
2190
+
2191
+ # The reference bases for this variant. They start at the given position.
2192
+ # Corresponds to the JSON property `referenceBases`
2193
+ # @return [String]
2194
+ attr_accessor :reference_bases
2195
+
2196
+ # The bases that appear instead of the reference bases.
2197
+ # Corresponds to the JSON property `alternateBases`
2198
+ # @return [Array<String>]
2199
+ attr_accessor :alternate_bases
2200
+
2201
+ # A measure of how likely this variant is to be real. A higher value is better.
2202
+ # Corresponds to the JSON property `quality`
2203
+ # @return [Float]
2204
+ attr_accessor :quality
2205
+
2206
+ # A list of filters (normally quality filters) this variant has failed. `PASS`
2207
+ # indicates this variant has passed all filters.
2208
+ # Corresponds to the JSON property `filter`
2209
+ # @return [Array<String>]
2210
+ attr_accessor :filter
2211
+
2212
+ # A map of additional variant information. This must be of the form map (string
2213
+ # key mapping to a list of string values).
2214
+ # Corresponds to the JSON property `info`
2215
+ # @return [Hash<String,Array<Object>>]
2216
+ attr_accessor :info
2217
+
2218
+ # The variant calls for this particular variant. Each one represents the
2219
+ # determination of genotype with respect to this variant.
2220
+ # Corresponds to the JSON property `calls`
2221
+ # @return [Array<Google::Apis::GenomicsV1::VariantCall>]
2222
+ attr_accessor :calls
2223
+
2224
+ def initialize(**args)
2225
+ update!(**args)
2226
+ end
2227
+
2228
+ # Update properties of this object
2229
+ def update!(**args)
2230
+ @variant_set_id = args[:variant_set_id] unless args[:variant_set_id].nil?
2231
+ @id = args[:id] unless args[:id].nil?
2232
+ @names = args[:names] unless args[:names].nil?
2233
+ @created = args[:created] unless args[:created].nil?
2234
+ @reference_name = args[:reference_name] unless args[:reference_name].nil?
2235
+ @start = args[:start] unless args[:start].nil?
2236
+ @end = args[:end] unless args[:end].nil?
2237
+ @reference_bases = args[:reference_bases] unless args[:reference_bases].nil?
2238
+ @alternate_bases = args[:alternate_bases] unless args[:alternate_bases].nil?
2239
+ @quality = args[:quality] unless args[:quality].nil?
2240
+ @filter = args[:filter] unless args[:filter].nil?
2241
+ @info = args[:info] unless args[:info].nil?
2242
+ @calls = args[:calls] unless args[:calls].nil?
2243
+ end
2244
+ end
2245
+
2246
+ # A call represents the determination of genotype with respect to a particular
2247
+ # variant. It may include associated information such as quality and phasing.
2248
+ # For example, a call might assign a probability of 0.32 to the occurrence of a
2249
+ # SNP named rs1234 in a call set with the name NA12345.
2250
+ class VariantCall
2251
+ include Google::Apis::Core::Hashable
2252
+
2253
+ # The ID of the call set this variant call belongs to.
2254
+ # Corresponds to the JSON property `callSetId`
2255
+ # @return [String]
2256
+ attr_accessor :call_set_id
2257
+
2258
+ # The name of the call set this variant call belongs to.
2259
+ # Corresponds to the JSON property `callSetName`
2260
+ # @return [String]
2261
+ attr_accessor :call_set_name
2262
+
2263
+ # The genotype of this variant call. Each value represents either the value of
2264
+ # the `referenceBases` field or a 1-based index into `alternateBases`. If a
2265
+ # variant had a `referenceBases` value of `T` and an `alternateBases` value of `[
2266
+ # "A", "C"]`, and the `genotype` was `[2, 1]`, that would mean the call
2267
+ # represented the heterozygous value `CA` for this variant. If the `genotype`
2268
+ # was instead `[0, 1]`, the represented value would be `TA`. Ordering of the
2269
+ # genotype values is important if the `phaseset` is present. If a genotype is
2270
+ # not called (that is, a `.` is present in the GT string) -1 is returned.
2271
+ # Corresponds to the JSON property `genotype`
2272
+ # @return [Array<Fixnum>]
2273
+ attr_accessor :genotype
2274
+
2275
+ # If this field is present, this variant call's genotype ordering implies the
2276
+ # phase of the bases and is consistent with any other variant calls in the same
2277
+ # reference sequence which have the same phaseset value. When importing data
2278
+ # from VCF, if the genotype data was phased but no phase set was specified this
2279
+ # field will be set to `*`.
2280
+ # Corresponds to the JSON property `phaseset`
2281
+ # @return [String]
2282
+ attr_accessor :phaseset
2283
+
2284
+ # The genotype likelihoods for this variant call. Each array entry represents
2285
+ # how likely a specific genotype is for this call. The value ordering is defined
2286
+ # by the GL tag in the VCF spec. If Phred-scaled genotype likelihood scores (PL)
2287
+ # are available and log10(P) genotype likelihood scores (GL) are not, PL scores
2288
+ # are converted to GL scores. If both are available, PL scores are stored in `
2289
+ # info`.
2290
+ # Corresponds to the JSON property `genotypeLikelihood`
2291
+ # @return [Array<Float>]
2292
+ attr_accessor :genotype_likelihood
2293
+
2294
+ # A map of additional variant call information. This must be of the form map (
2295
+ # string key mapping to a list of string values).
2296
+ # Corresponds to the JSON property `info`
2297
+ # @return [Hash<String,Array<Object>>]
2298
+ attr_accessor :info
2299
+
2300
+ def initialize(**args)
2301
+ update!(**args)
2302
+ end
2303
+
2304
+ # Update properties of this object
2305
+ def update!(**args)
2306
+ @call_set_id = args[:call_set_id] unless args[:call_set_id].nil?
2307
+ @call_set_name = args[:call_set_name] unless args[:call_set_name].nil?
2308
+ @genotype = args[:genotype] unless args[:genotype].nil?
2309
+ @phaseset = args[:phaseset] unless args[:phaseset].nil?
2310
+ @genotype_likelihood = args[:genotype_likelihood] unless args[:genotype_likelihood].nil?
2311
+ @info = args[:info] unless args[:info].nil?
2312
+ end
2313
+ end
2314
+
2315
+ # The call set search request.
2316
+ class SearchCallSetsRequest
2317
+ include Google::Apis::Core::Hashable
2318
+
2319
+ # Restrict the query to call sets within the given variant sets. At least one ID
2320
+ # must be provided.
2321
+ # Corresponds to the JSON property `variantSetIds`
2322
+ # @return [Array<String>]
2323
+ attr_accessor :variant_set_ids
2324
+
2325
+ # Only return call sets for which a substring of the name matches this string.
2326
+ # Corresponds to the JSON property `name`
2327
+ # @return [String]
2328
+ attr_accessor :name
2329
+
2330
+ # The continuation token, which is used to page through large result sets. To
2331
+ # get the next page of results, set this parameter to the value of `
2332
+ # nextPageToken` from the previous response.
2333
+ # Corresponds to the JSON property `pageToken`
2334
+ # @return [String]
2335
+ attr_accessor :page_token
2336
+
2337
+ # The maximum number of results to return in a single page. If unspecified,
2338
+ # defaults to 1024.
2339
+ # Corresponds to the JSON property `pageSize`
2340
+ # @return [Fixnum]
2341
+ attr_accessor :page_size
2342
+
2343
+ def initialize(**args)
2344
+ update!(**args)
2345
+ end
2346
+
2347
+ # Update properties of this object
2348
+ def update!(**args)
2349
+ @variant_set_ids = args[:variant_set_ids] unless args[:variant_set_ids].nil?
2350
+ @name = args[:name] unless args[:name].nil?
2351
+ @page_token = args[:page_token] unless args[:page_token].nil?
2352
+ @page_size = args[:page_size] unless args[:page_size].nil?
2353
+ end
2354
+ end
2355
+
2356
+ # The call set search response.
2357
+ class SearchCallSetsResponse
2358
+ include Google::Apis::Core::Hashable
2359
+
2360
+ # The list of matching call sets.
2361
+ # Corresponds to the JSON property `callSets`
2362
+ # @return [Array<Google::Apis::GenomicsV1::CallSet>]
2363
+ attr_accessor :call_sets
2364
+
2365
+ # The continuation token, which is used to page through large result sets.
2366
+ # Provide this value in a subsequent request to return the next page of results.
2367
+ # This field will be empty if there aren't any additional results.
2368
+ # Corresponds to the JSON property `nextPageToken`
2369
+ # @return [String]
2370
+ attr_accessor :next_page_token
2371
+
2372
+ def initialize(**args)
2373
+ update!(**args)
2374
+ end
2375
+
2376
+ # Update properties of this object
2377
+ def update!(**args)
2378
+ @call_sets = args[:call_sets] unless args[:call_sets].nil?
2379
+ @next_page_token = args[:next_page_token] unless args[:next_page_token].nil?
2380
+ end
2381
+ end
2382
+
2383
+ # A call set is a collection of variant calls, typically for one sample. It
2384
+ # belongs to a variant set. For more genomics resource definitions, see [
2385
+ # Fundamentals of Google Genomics](https://cloud.google.com/genomics/
2386
+ # fundamentals-of-google-genomics)
2387
+ class CallSet
2388
+ include Google::Apis::Core::Hashable
2389
+
2390
+ # The server-generated call set ID, unique across all call sets.
2391
+ # Corresponds to the JSON property `id`
2392
+ # @return [String]
2393
+ attr_accessor :id
2394
+
2395
+ # The call set name.
2396
+ # Corresponds to the JSON property `name`
2397
+ # @return [String]
2398
+ attr_accessor :name
2399
+
2400
+ # The sample ID this call set corresponds to.
2401
+ # Corresponds to the JSON property `sampleId`
2402
+ # @return [String]
2403
+ attr_accessor :sample_id
2404
+
2405
+ # The IDs of the variant sets this call set belongs to. This field must have
2406
+ # exactly length one, as a call set belongs to a single variant set. This field
2407
+ # is repeated for compatibility with the [GA4GH 0.5.1 API](https://github.com/
2408
+ # ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
2409
+ # Corresponds to the JSON property `variantSetIds`
2410
+ # @return [Array<String>]
2411
+ attr_accessor :variant_set_ids
2412
+
2413
+ # The date this call set was created in milliseconds from the epoch.
2414
+ # Corresponds to the JSON property `created`
2415
+ # @return [String]
2416
+ attr_accessor :created
2417
+
2418
+ # A map of additional call set information. This must be of the form map (string
2419
+ # key mapping to a list of string values).
2420
+ # Corresponds to the JSON property `info`
2421
+ # @return [Hash<String,Array<Object>>]
2422
+ attr_accessor :info
2423
+
2424
+ def initialize(**args)
2425
+ update!(**args)
2426
+ end
2427
+
2428
+ # Update properties of this object
2429
+ def update!(**args)
2430
+ @id = args[:id] unless args[:id].nil?
2431
+ @name = args[:name] unless args[:name].nil?
2432
+ @sample_id = args[:sample_id] unless args[:sample_id].nil?
2433
+ @variant_set_ids = args[:variant_set_ids] unless args[:variant_set_ids].nil?
2434
+ @created = args[:created] unless args[:created].nil?
2435
+ @info = args[:info] unless args[:info].nil?
2436
+ end
2437
+ end
2438
+
2439
+ # The stream variants request.
2440
+ class StreamVariantsRequest
2441
+ include Google::Apis::Core::Hashable
2442
+
2443
+ # The Google Developers Console project ID or number which will be billed for
2444
+ # this access. The caller must have WRITE access to this project. Required.
2445
+ # Corresponds to the JSON property `projectId`
2446
+ # @return [String]
2447
+ attr_accessor :project_id
2448
+
2449
+ # The variant set ID from which to stream variants.
2450
+ # Corresponds to the JSON property `variantSetId`
2451
+ # @return [String]
2452
+ attr_accessor :variant_set_id
2453
+
2454
+ # Only return variant calls which belong to call sets with these IDs. Leaving
2455
+ # this blank returns all variant calls.
2456
+ # Corresponds to the JSON property `callSetIds`
2457
+ # @return [Array<String>]
2458
+ attr_accessor :call_set_ids
2459
+
2460
+ # Required. Only return variants in this reference sequence.
2461
+ # Corresponds to the JSON property `referenceName`
2462
+ # @return [String]
2463
+ attr_accessor :reference_name
2464
+
2465
+ # The beginning of the window (0-based, inclusive) for which overlapping
2466
+ # variants should be returned.
2467
+ # Corresponds to the JSON property `start`
2468
+ # @return [String]
2469
+ attr_accessor :start
2470
+
2471
+ # The end of the window (0-based, exclusive) for which overlapping variants
2472
+ # should be returned.
2473
+ # Corresponds to the JSON property `end`
2474
+ # @return [String]
2475
+ attr_accessor :end
2476
+
2477
+ def initialize(**args)
2478
+ update!(**args)
2479
+ end
2480
+
2481
+ # Update properties of this object
2482
+ def update!(**args)
2483
+ @project_id = args[:project_id] unless args[:project_id].nil?
2484
+ @variant_set_id = args[:variant_set_id] unless args[:variant_set_id].nil?
2485
+ @call_set_ids = args[:call_set_ids] unless args[:call_set_ids].nil?
2486
+ @reference_name = args[:reference_name] unless args[:reference_name].nil?
2487
+ @start = args[:start] unless args[:start].nil?
2488
+ @end = args[:end] unless args[:end].nil?
2489
+ end
2490
+ end
2491
+
2492
+ #
2493
+ class StreamVariantsResponse
2494
+ include Google::Apis::Core::Hashable
2495
+
2496
+ #
2497
+ # Corresponds to the JSON property `variants`
2498
+ # @return [Array<Google::Apis::GenomicsV1::Variant>]
2499
+ attr_accessor :variants
2500
+
2501
+ def initialize(**args)
2502
+ update!(**args)
2503
+ end
2504
+
2505
+ # Update properties of this object
2506
+ def update!(**args)
2507
+ @variants = args[:variants] unless args[:variants].nil?
2508
+ end
2509
+ end
2510
+
2511
+ # The read group set import response.
2512
+ class ImportReadGroupSetsResponse
2513
+ include Google::Apis::Core::Hashable
2514
+
2515
+ # IDs of the read group sets that were created.
2516
+ # Corresponds to the JSON property `readGroupSetIds`
2517
+ # @return [Array<String>]
2518
+ attr_accessor :read_group_set_ids
2519
+
2520
+ def initialize(**args)
2521
+ update!(**args)
2522
+ end
2523
+
2524
+ # Update properties of this object
2525
+ def update!(**args)
2526
+ @read_group_set_ids = args[:read_group_set_ids] unless args[:read_group_set_ids].nil?
2527
+ end
2528
+ end
2529
+
2530
+ # The variant data import response.
2531
+ class ImportVariantsResponse
2532
+ include Google::Apis::Core::Hashable
2533
+
2534
+ # IDs of the call sets created during the import.
2535
+ # Corresponds to the JSON property `callSetIds`
2536
+ # @return [Array<String>]
2537
+ attr_accessor :call_set_ids
2538
+
2539
+ def initialize(**args)
2540
+ update!(**args)
2541
+ end
2542
+
2543
+ # Update properties of this object
2544
+ def update!(**args)
2545
+ @call_set_ids = args[:call_set_ids] unless args[:call_set_ids].nil?
2546
+ end
2547
+ end
2548
+
2549
+ # Metadata describing an Operation.
2550
+ class OperationMetadata
2551
+ include Google::Apis::Core::Hashable
2552
+
2553
+ # The Google Cloud Project in which the job is scoped.
2554
+ # Corresponds to the JSON property `projectId`
2555
+ # @return [String]
2556
+ attr_accessor :project_id
2557
+
2558
+ # The time at which the job was submitted to the Genomics service.
2559
+ # Corresponds to the JSON property `createTime`
2560
+ # @return [String]
2561
+ attr_accessor :create_time
2562
+
2563
+ # The original request that started the operation. Note that this will be in
2564
+ # current version of the API. If the operation was started with v1beta2 API and
2565
+ # a GetOperation is performed on v1 API, a v1 request will be returned.
2566
+ # Corresponds to the JSON property `request`
2567
+ # @return [Hash<String,Object>]
2568
+ attr_accessor :request
2569
+
2570
+ # Optional event messages that were generated during the job's execution. This
2571
+ # also contains any warnings that were generated during import or export.
2572
+ # Corresponds to the JSON property `events`
2573
+ # @return [Array<Google::Apis::GenomicsV1::OperationEvent>]
2574
+ attr_accessor :events
2575
+
2576
+ def initialize(**args)
2577
+ update!(**args)
2578
+ end
2579
+
2580
+ # Update properties of this object
2581
+ def update!(**args)
2582
+ @project_id = args[:project_id] unless args[:project_id].nil?
2583
+ @create_time = args[:create_time] unless args[:create_time].nil?
2584
+ @request = args[:request] unless args[:request].nil?
2585
+ @events = args[:events] unless args[:events].nil?
2586
+ end
2587
+ end
2588
+
2589
+ # An event that occurred during an Operation.
2590
+ class OperationEvent
2591
+ include Google::Apis::Core::Hashable
2592
+
2593
+ # Required description of event.
2594
+ # Corresponds to the JSON property `description`
2595
+ # @return [String]
2596
+ attr_accessor :description
2597
+
2598
+ def initialize(**args)
2599
+ update!(**args)
2600
+ end
2601
+
2602
+ # Update properties of this object
2603
+ def update!(**args)
2604
+ @description = args[:description] unless args[:description].nil?
2605
+ end
2606
+ end
2607
+ end
2608
+ end
2609
+ end