google-api-client 0.28.4 → 0.28.5

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Files changed (426) hide show
  1. checksums.yaml +5 -5
  2. data/.kokoro/build.sh +3 -5
  3. data/.kokoro/continuous/linux.cfg +1 -1
  4. data/.kokoro/presubmit/linux.cfg +1 -1
  5. data/CHANGELOG.md +147 -0
  6. data/generated/google/apis/accesscontextmanager_v1.rb +34 -0
  7. data/generated/google/apis/accesscontextmanager_v1/classes.rb +755 -0
  8. data/generated/google/apis/accesscontextmanager_v1/representations.rb +282 -0
  9. data/generated/google/apis/accesscontextmanager_v1/service.rb +788 -0
  10. data/generated/google/apis/accesscontextmanager_v1beta.rb +1 -1
  11. data/generated/google/apis/accesscontextmanager_v1beta/classes.rb +46 -30
  12. data/generated/google/apis/accesscontextmanager_v1beta/representations.rb +4 -0
  13. data/generated/google/apis/adexchangebuyer2_v2beta1.rb +1 -1
  14. data/generated/google/apis/adexchangebuyer2_v2beta1/classes.rb +2 -2
  15. data/generated/google/apis/admin_directory_v1.rb +1 -1
  16. data/generated/google/apis/admin_directory_v1/classes.rb +5 -50
  17. data/generated/google/apis/admin_directory_v1/representations.rb +0 -2
  18. data/generated/google/apis/alertcenter_v1beta1.rb +1 -1
  19. data/generated/google/apis/alertcenter_v1beta1/classes.rb +3 -2
  20. data/generated/google/apis/alertcenter_v1beta1/service.rb +7 -7
  21. data/generated/google/apis/analyticsreporting_v4.rb +1 -1
  22. data/generated/google/apis/analyticsreporting_v4/classes.rb +638 -0
  23. data/generated/google/apis/analyticsreporting_v4/representations.rb +248 -0
  24. data/generated/google/apis/analyticsreporting_v4/service.rb +30 -0
  25. data/generated/google/apis/androiddeviceprovisioning_v1.rb +1 -1
  26. data/generated/google/apis/androiddeviceprovisioning_v1/classes.rb +10 -10
  27. data/generated/google/apis/androidenterprise_v1.rb +1 -1
  28. data/generated/google/apis/androidenterprise_v1/classes.rb +8 -0
  29. data/generated/google/apis/androidenterprise_v1/representations.rb +2 -0
  30. data/generated/google/apis/androidmanagement_v1.rb +1 -1
  31. data/generated/google/apis/androidmanagement_v1/classes.rb +59 -2
  32. data/generated/google/apis/androidmanagement_v1/representations.rb +33 -0
  33. data/generated/google/apis/appengine_v1.rb +1 -1
  34. data/generated/google/apis/appengine_v1/classes.rb +43 -98
  35. data/generated/google/apis/appengine_v1/representations.rb +17 -35
  36. data/generated/google/apis/appengine_v1alpha.rb +1 -1
  37. data/generated/google/apis/appengine_v1alpha/classes.rb +0 -97
  38. data/generated/google/apis/appengine_v1alpha/representations.rb +0 -35
  39. data/generated/google/apis/appengine_v1beta.rb +1 -1
  40. data/generated/google/apis/appengine_v1beta/classes.rb +3 -99
  41. data/generated/google/apis/appengine_v1beta/representations.rb +0 -35
  42. data/generated/google/apis/bigquery_v2.rb +1 -1
  43. data/generated/google/apis/bigquery_v2/classes.rb +244 -173
  44. data/generated/google/apis/bigquery_v2/representations.rb +79 -58
  45. data/generated/google/apis/bigquerydatatransfer_v1.rb +3 -3
  46. data/generated/google/apis/bigquerydatatransfer_v1/classes.rb +10 -10
  47. data/generated/google/apis/bigquerydatatransfer_v1/service.rb +38 -6
  48. data/generated/google/apis/bigtableadmin_v2.rb +1 -1
  49. data/generated/google/apis/bigtableadmin_v2/classes.rb +4 -4
  50. data/generated/google/apis/binaryauthorization_v1beta1.rb +1 -1
  51. data/generated/google/apis/binaryauthorization_v1beta1/classes.rb +66 -6
  52. data/generated/google/apis/binaryauthorization_v1beta1/representations.rb +17 -0
  53. data/generated/google/apis/cloudasset_v1.rb +34 -0
  54. data/generated/google/apis/cloudasset_v1/classes.rb +805 -0
  55. data/generated/google/apis/cloudasset_v1/representations.rb +263 -0
  56. data/generated/google/apis/cloudasset_v1/service.rb +190 -0
  57. data/generated/google/apis/cloudasset_v1beta1.rb +1 -1
  58. data/generated/google/apis/cloudasset_v1beta1/classes.rb +20 -18
  59. data/generated/google/apis/cloudasset_v1beta1/service.rb +4 -4
  60. data/generated/google/apis/cloudbilling_v1.rb +1 -1
  61. data/generated/google/apis/cloudbilling_v1/classes.rb +1 -1
  62. data/generated/google/apis/cloudbuild_v1.rb +1 -1
  63. data/generated/google/apis/cloudbuild_v1/classes.rb +149 -10
  64. data/generated/google/apis/cloudbuild_v1/representations.rb +65 -0
  65. data/generated/google/apis/cloudbuild_v1alpha1.rb +1 -1
  66. data/generated/google/apis/cloudbuild_v1alpha1/classes.rb +6 -0
  67. data/generated/google/apis/cloudbuild_v1alpha1/representations.rb +2 -0
  68. data/generated/google/apis/cloudbuild_v1alpha1/service.rb +1 -1
  69. data/generated/google/apis/cloudfunctions_v1.rb +1 -1
  70. data/generated/google/apis/cloudfunctions_v1/classes.rb +11 -4
  71. data/generated/google/apis/cloudfunctions_v1/service.rb +8 -2
  72. data/generated/google/apis/cloudfunctions_v1beta2.rb +1 -1
  73. data/generated/google/apis/cloudfunctions_v1beta2/classes.rb +2 -1
  74. data/generated/google/apis/cloudfunctions_v1beta2/service.rb +6 -0
  75. data/generated/google/apis/cloudidentity_v1.rb +7 -1
  76. data/generated/google/apis/cloudidentity_v1/classes.rb +13 -13
  77. data/generated/google/apis/cloudidentity_v1/service.rb +6 -15
  78. data/generated/google/apis/cloudidentity_v1beta1.rb +7 -1
  79. data/generated/google/apis/cloudidentity_v1beta1/classes.rb +10 -10
  80. data/generated/google/apis/cloudidentity_v1beta1/service.rb +4 -10
  81. data/generated/google/apis/cloudiot_v1.rb +1 -1
  82. data/generated/google/apis/cloudiot_v1/classes.rb +11 -11
  83. data/generated/google/apis/cloudkms_v1.rb +1 -1
  84. data/generated/google/apis/cloudkms_v1/classes.rb +7 -3
  85. data/generated/google/apis/cloudprivatecatalog_v1beta1.rb +35 -0
  86. data/generated/google/apis/cloudprivatecatalog_v1beta1/classes.rb +358 -0
  87. data/generated/google/apis/cloudprivatecatalog_v1beta1/representations.rb +123 -0
  88. data/generated/google/apis/cloudprivatecatalog_v1beta1/service.rb +486 -0
  89. data/generated/google/apis/cloudprivatecatalogproducer_v1beta1.rb +35 -0
  90. data/generated/google/apis/cloudprivatecatalogproducer_v1beta1/classes.rb +1212 -0
  91. data/generated/google/apis/cloudprivatecatalogproducer_v1beta1/representations.rb +399 -0
  92. data/generated/google/apis/cloudprivatecatalogproducer_v1beta1/service.rb +1073 -0
  93. data/generated/google/apis/cloudresourcemanager_v1.rb +1 -1
  94. data/generated/google/apis/cloudresourcemanager_v1/classes.rb +17 -16
  95. data/generated/google/apis/cloudresourcemanager_v1beta1.rb +1 -1
  96. data/generated/google/apis/cloudresourcemanager_v1beta1/classes.rb +3 -3
  97. data/generated/google/apis/cloudresourcemanager_v2.rb +1 -1
  98. data/generated/google/apis/cloudresourcemanager_v2/classes.rb +14 -15
  99. data/generated/google/apis/cloudresourcemanager_v2/service.rb +1 -1
  100. data/generated/google/apis/cloudresourcemanager_v2beta1.rb +1 -1
  101. data/generated/google/apis/cloudresourcemanager_v2beta1/classes.rb +14 -15
  102. data/generated/google/apis/cloudresourcemanager_v2beta1/service.rb +1 -1
  103. data/generated/google/apis/cloudscheduler_v1beta1.rb +1 -1
  104. data/generated/google/apis/cloudscheduler_v1beta1/classes.rb +60 -44
  105. data/generated/google/apis/cloudscheduler_v1beta1/service.rb +5 -2
  106. data/generated/google/apis/cloudsearch_v1.rb +1 -1
  107. data/generated/google/apis/cloudsearch_v1/classes.rb +220 -48
  108. data/generated/google/apis/cloudsearch_v1/representations.rb +91 -0
  109. data/generated/google/apis/cloudsearch_v1/service.rb +15 -13
  110. data/generated/google/apis/cloudshell_v1.rb +1 -1
  111. data/generated/google/apis/cloudshell_v1/classes.rb +10 -10
  112. data/generated/google/apis/cloudshell_v1alpha1.rb +1 -1
  113. data/generated/google/apis/cloudshell_v1alpha1/classes.rb +17 -10
  114. data/generated/google/apis/cloudshell_v1alpha1/representations.rb +1 -0
  115. data/generated/google/apis/{partners_v2.rb → cloudtasks_v2.rb} +11 -9
  116. data/generated/google/apis/cloudtasks_v2/classes.rb +1432 -0
  117. data/generated/google/apis/cloudtasks_v2/representations.rb +408 -0
  118. data/generated/google/apis/cloudtasks_v2/service.rb +856 -0
  119. data/generated/google/apis/cloudtasks_v2beta2.rb +1 -1
  120. data/generated/google/apis/cloudtasks_v2beta2/classes.rb +119 -88
  121. data/generated/google/apis/cloudtasks_v2beta2/service.rb +3 -2
  122. data/generated/google/apis/cloudtasks_v2beta3.rb +1 -1
  123. data/generated/google/apis/cloudtasks_v2beta3/classes.rb +122 -90
  124. data/generated/google/apis/cloudtasks_v2beta3/service.rb +3 -2
  125. data/generated/google/apis/cloudtrace_v2.rb +1 -1
  126. data/generated/google/apis/cloudtrace_v2/classes.rb +10 -10
  127. data/generated/google/apis/composer_v1.rb +1 -1
  128. data/generated/google/apis/composer_v1/classes.rb +21 -15
  129. data/generated/google/apis/composer_v1beta1.rb +1 -1
  130. data/generated/google/apis/composer_v1beta1/classes.rb +165 -29
  131. data/generated/google/apis/composer_v1beta1/representations.rb +50 -0
  132. data/generated/google/apis/compute_alpha.rb +1 -1
  133. data/generated/google/apis/compute_alpha/classes.rb +7147 -4656
  134. data/generated/google/apis/compute_alpha/representations.rb +1205 -236
  135. data/generated/google/apis/compute_alpha/service.rb +4338 -3274
  136. data/generated/google/apis/compute_beta.rb +1 -1
  137. data/generated/google/apis/compute_beta/classes.rb +5974 -4567
  138. data/generated/google/apis/compute_beta/representations.rb +846 -283
  139. data/generated/google/apis/compute_beta/service.rb +4274 -3153
  140. data/generated/google/apis/compute_v1.rb +1 -1
  141. data/generated/google/apis/compute_v1/classes.rb +325 -50
  142. data/generated/google/apis/compute_v1/representations.rb +104 -1
  143. data/generated/google/apis/compute_v1/service.rb +153 -2
  144. data/generated/google/apis/container_v1.rb +1 -1
  145. data/generated/google/apis/container_v1/classes.rb +1 -0
  146. data/generated/google/apis/container_v1/service.rb +4 -4
  147. data/generated/google/apis/container_v1beta1.rb +1 -1
  148. data/generated/google/apis/container_v1beta1/classes.rb +7 -0
  149. data/generated/google/apis/container_v1beta1/representations.rb +2 -0
  150. data/generated/google/apis/container_v1beta1/service.rb +4 -4
  151. data/generated/google/apis/containeranalysis_v1alpha1.rb +1 -1
  152. data/generated/google/apis/containeranalysis_v1alpha1/classes.rb +25 -17
  153. data/generated/google/apis/containeranalysis_v1alpha1/representations.rb +1 -0
  154. data/generated/google/apis/containeranalysis_v1beta1.rb +1 -1
  155. data/generated/google/apis/containeranalysis_v1beta1/classes.rb +137 -12
  156. data/generated/google/apis/containeranalysis_v1beta1/representations.rb +33 -0
  157. data/generated/google/apis/content_v2.rb +1 -1
  158. data/generated/google/apis/content_v2/classes.rb +204 -93
  159. data/generated/google/apis/content_v2/representations.rb +49 -0
  160. data/generated/google/apis/content_v2/service.rb +82 -41
  161. data/generated/google/apis/content_v2_1.rb +1 -1
  162. data/generated/google/apis/content_v2_1/classes.rb +360 -209
  163. data/generated/google/apis/content_v2_1/representations.rb +129 -56
  164. data/generated/google/apis/content_v2_1/service.rb +97 -10
  165. data/generated/google/apis/dataflow_v1b3.rb +1 -1
  166. data/generated/google/apis/dataflow_v1b3/classes.rb +51 -19
  167. data/generated/google/apis/dataflow_v1b3/representations.rb +2 -0
  168. data/generated/google/apis/dataflow_v1b3/service.rb +133 -25
  169. data/generated/google/apis/dataproc_v1.rb +1 -1
  170. data/generated/google/apis/dataproc_v1/classes.rb +20 -15
  171. data/generated/google/apis/dataproc_v1/representations.rb +1 -0
  172. data/generated/google/apis/dataproc_v1beta2.rb +1 -1
  173. data/generated/google/apis/dataproc_v1beta2/classes.rb +516 -45
  174. data/generated/google/apis/dataproc_v1beta2/representations.rb +185 -7
  175. data/generated/google/apis/dataproc_v1beta2/service.rb +575 -6
  176. data/generated/google/apis/dfareporting_v3_3.rb +1 -1
  177. data/generated/google/apis/dfareporting_v3_3/classes.rb +3 -3
  178. data/generated/google/apis/dialogflow_v2.rb +1 -1
  179. data/generated/google/apis/dialogflow_v2/classes.rb +126 -77
  180. data/generated/google/apis/dialogflow_v2/service.rb +40 -24
  181. data/generated/google/apis/dialogflow_v2beta1.rb +1 -1
  182. data/generated/google/apis/dialogflow_v2beta1/classes.rb +126 -77
  183. data/generated/google/apis/dialogflow_v2beta1/service.rb +40 -24
  184. data/generated/google/apis/dlp_v2.rb +1 -1
  185. data/generated/google/apis/dlp_v2/classes.rb +44 -41
  186. data/generated/google/apis/dlp_v2/representations.rb +12 -0
  187. data/generated/google/apis/dlp_v2/service.rb +35 -0
  188. data/generated/google/apis/dns_v1.rb +1 -1
  189. data/generated/google/apis/dns_v1/classes.rb +163 -190
  190. data/generated/google/apis/dns_v1/representations.rb +34 -0
  191. data/generated/google/apis/dns_v1/service.rb +15 -110
  192. data/generated/google/apis/dns_v1beta2.rb +1 -1
  193. data/generated/google/apis/dns_v1beta2/classes.rb +117 -248
  194. data/generated/google/apis/dns_v1beta2/service.rb +21 -141
  195. data/generated/google/apis/dns_v2beta1.rb +1 -1
  196. data/generated/google/apis/dns_v2beta1/classes.rb +163 -190
  197. data/generated/google/apis/dns_v2beta1/representations.rb +34 -0
  198. data/generated/google/apis/dns_v2beta1/service.rb +15 -110
  199. data/generated/google/apis/docs_v1.rb +1 -1
  200. data/generated/google/apis/docs_v1/classes.rb +118 -47
  201. data/generated/google/apis/docs_v1/representations.rb +39 -0
  202. data/generated/google/apis/drive_v2.rb +1 -1
  203. data/generated/google/apis/drive_v2/service.rb +3 -1
  204. data/generated/google/apis/drive_v3.rb +1 -1
  205. data/generated/google/apis/drive_v3/service.rb +3 -2
  206. data/generated/google/apis/factchecktools_v1alpha1.rb +34 -0
  207. data/generated/google/apis/factchecktools_v1alpha1/classes.rb +459 -0
  208. data/generated/google/apis/factchecktools_v1alpha1/representations.rb +207 -0
  209. data/generated/google/apis/factchecktools_v1alpha1/service.rb +300 -0
  210. data/generated/google/apis/file_v1.rb +1 -1
  211. data/generated/google/apis/file_v1/classes.rb +203 -10
  212. data/generated/google/apis/file_v1/representations.rb +70 -0
  213. data/generated/google/apis/file_v1/service.rb +190 -0
  214. data/generated/google/apis/file_v1beta1.rb +1 -1
  215. data/generated/google/apis/file_v1beta1/classes.rb +10 -10
  216. data/generated/google/apis/firebasedynamiclinks_v1.rb +1 -1
  217. data/generated/google/apis/firebasedynamiclinks_v1/classes.rb +13 -10
  218. data/generated/google/apis/firebaserules_v1.rb +1 -1
  219. data/generated/google/apis/firebaserules_v1/service.rb +1 -1
  220. data/generated/google/apis/fitness_v1.rb +1 -1
  221. data/generated/google/apis/fitness_v1/classes.rb +3 -0
  222. data/generated/google/apis/fitness_v1/service.rb +1 -45
  223. data/generated/google/apis/games_management_v1management.rb +2 -2
  224. data/generated/google/apis/games_v1.rb +2 -2
  225. data/generated/google/apis/genomics_v1.rb +1 -10
  226. data/generated/google/apis/genomics_v1/classes.rb +190 -3321
  227. data/generated/google/apis/genomics_v1/representations.rb +128 -1265
  228. data/generated/google/apis/genomics_v1/service.rb +75 -1982
  229. data/generated/google/apis/genomics_v1alpha2.rb +1 -1
  230. data/generated/google/apis/genomics_v1alpha2/classes.rb +11 -51
  231. data/generated/google/apis/genomics_v1alpha2/representations.rb +0 -26
  232. data/generated/google/apis/genomics_v1alpha2/service.rb +1 -2
  233. data/generated/google/apis/genomics_v2alpha1.rb +1 -1
  234. data/generated/google/apis/genomics_v2alpha1/classes.rb +19 -58
  235. data/generated/google/apis/genomics_v2alpha1/representations.rb +0 -26
  236. data/generated/google/apis/genomics_v2alpha1/service.rb +1 -2
  237. data/generated/google/apis/groupssettings_v1.rb +2 -2
  238. data/generated/google/apis/groupssettings_v1/classes.rb +126 -1
  239. data/generated/google/apis/groupssettings_v1/representations.rb +18 -0
  240. data/generated/google/apis/groupssettings_v1/service.rb +1 -1
  241. data/generated/google/apis/iam_v1.rb +1 -1
  242. data/generated/google/apis/iam_v1/classes.rb +123 -1
  243. data/generated/google/apis/iam_v1/representations.rb +67 -0
  244. data/generated/google/apis/iam_v1/service.rb +198 -5
  245. data/generated/google/apis/iamcredentials_v1.rb +1 -1
  246. data/generated/google/apis/iamcredentials_v1/classes.rb +8 -4
  247. data/generated/google/apis/iamcredentials_v1/service.rb +10 -5
  248. data/generated/google/apis/iap_v1.rb +1 -1
  249. data/generated/google/apis/iap_v1/classes.rb +1 -1
  250. data/generated/google/apis/iap_v1beta1.rb +1 -1
  251. data/generated/google/apis/iap_v1beta1/classes.rb +1 -1
  252. data/generated/google/apis/jobs_v2.rb +1 -1
  253. data/generated/google/apis/jobs_v2/classes.rb +7 -9
  254. data/generated/google/apis/jobs_v3.rb +1 -1
  255. data/generated/google/apis/jobs_v3/classes.rb +1 -1
  256. data/generated/google/apis/jobs_v3p1beta1.rb +1 -1
  257. data/generated/google/apis/jobs_v3p1beta1/classes.rb +11 -11
  258. data/generated/google/apis/language_v1.rb +1 -1
  259. data/generated/google/apis/language_v1/classes.rb +5 -5
  260. data/generated/google/apis/language_v1beta1.rb +1 -1
  261. data/generated/google/apis/language_v1beta1/classes.rb +5 -5
  262. data/generated/google/apis/language_v1beta2.rb +1 -1
  263. data/generated/google/apis/language_v1beta2/classes.rb +5 -5
  264. data/generated/google/apis/logging_v2.rb +1 -1
  265. data/generated/google/apis/logging_v2/classes.rb +2 -3
  266. data/generated/google/apis/logging_v2beta1.rb +1 -1
  267. data/generated/google/apis/logging_v2beta1/classes.rb +2 -3
  268. data/generated/google/apis/ml_v1.rb +1 -1
  269. data/generated/google/apis/ml_v1/classes.rb +158 -36
  270. data/generated/google/apis/ml_v1/representations.rb +23 -2
  271. data/generated/google/apis/monitoring_v3.rb +1 -1
  272. data/generated/google/apis/monitoring_v3/classes.rb +8 -7
  273. data/generated/google/apis/monitoring_v3/service.rb +6 -1
  274. data/generated/google/apis/oauth2_v1.rb +2 -5
  275. data/generated/google/apis/oauth2_v1/classes.rb +0 -124
  276. data/generated/google/apis/oauth2_v1/representations.rb +0 -62
  277. data/generated/google/apis/oauth2_v1/service.rb +0 -159
  278. data/generated/google/apis/oauth2_v2.rb +2 -5
  279. data/generated/google/apis/people_v1.rb +3 -3
  280. data/generated/google/apis/people_v1/classes.rb +19 -18
  281. data/generated/google/apis/people_v1/service.rb +4 -0
  282. data/generated/google/apis/plus_domains_v1.rb +3 -3
  283. data/generated/google/apis/plus_v1.rb +3 -3
  284. data/generated/google/apis/poly_v1.rb +1 -1
  285. data/generated/google/apis/poly_v1/classes.rb +5 -4
  286. data/generated/google/apis/proximitybeacon_v1beta1.rb +1 -1
  287. data/generated/google/apis/proximitybeacon_v1beta1/classes.rb +8 -6
  288. data/generated/google/apis/pubsub_v1.rb +1 -1
  289. data/generated/google/apis/pubsub_v1/classes.rb +53 -38
  290. data/generated/google/apis/pubsub_v1/representations.rb +16 -0
  291. data/generated/google/apis/pubsub_v1/service.rb +6 -29
  292. data/generated/google/apis/pubsub_v1beta2.rb +1 -1
  293. data/generated/google/apis/pubsub_v1beta2/classes.rb +45 -1
  294. data/generated/google/apis/pubsub_v1beta2/representations.rb +16 -0
  295. data/generated/google/apis/redis_v1.rb +1 -1
  296. data/generated/google/apis/redis_v1beta1.rb +1 -1
  297. data/generated/google/apis/redis_v1beta1/classes.rb +0 -10
  298. data/generated/google/apis/redis_v1beta1/representations.rb +0 -1
  299. data/generated/google/apis/remotebuildexecution_v1.rb +1 -1
  300. data/generated/google/apis/remotebuildexecution_v1/classes.rb +42 -28
  301. data/generated/google/apis/remotebuildexecution_v1/representations.rb +2 -0
  302. data/generated/google/apis/remotebuildexecution_v1alpha.rb +1 -1
  303. data/generated/google/apis/remotebuildexecution_v1alpha/classes.rb +42 -28
  304. data/generated/google/apis/remotebuildexecution_v1alpha/representations.rb +2 -0
  305. data/generated/google/apis/remotebuildexecution_v2.rb +1 -1
  306. data/generated/google/apis/remotebuildexecution_v2/classes.rb +52 -38
  307. data/generated/google/apis/remotebuildexecution_v2/representations.rb +2 -0
  308. data/generated/google/apis/reseller_v1.rb +1 -1
  309. data/generated/google/apis/reseller_v1/classes.rb +32 -39
  310. data/generated/google/apis/reseller_v1/service.rb +1 -1
  311. data/generated/google/apis/runtimeconfig_v1.rb +1 -1
  312. data/generated/google/apis/runtimeconfig_v1/classes.rb +10 -10
  313. data/generated/google/apis/runtimeconfig_v1beta1.rb +1 -1
  314. data/generated/google/apis/runtimeconfig_v1beta1/classes.rb +25 -24
  315. data/generated/google/apis/script_v1.rb +1 -1
  316. data/generated/google/apis/script_v1/classes.rb +0 -6
  317. data/generated/google/apis/script_v1/representations.rb +0 -1
  318. data/generated/google/apis/serviceconsumermanagement_v1.rb +1 -1
  319. data/generated/google/apis/serviceconsumermanagement_v1/classes.rb +73 -151
  320. data/generated/google/apis/serviceconsumermanagement_v1/service.rb +48 -50
  321. data/generated/google/apis/servicecontrol_v1.rb +1 -1
  322. data/generated/google/apis/servicecontrol_v1/classes.rb +108 -24
  323. data/generated/google/apis/servicecontrol_v1/representations.rb +45 -0
  324. data/generated/google/apis/servicemanagement_v1.rb +1 -1
  325. data/generated/google/apis/servicemanagement_v1/classes.rb +35 -113
  326. data/generated/google/apis/servicemanagement_v1/service.rb +6 -3
  327. data/generated/google/apis/servicenetworking_v1.rb +38 -0
  328. data/generated/google/apis/servicenetworking_v1/classes.rb +3591 -0
  329. data/generated/google/apis/servicenetworking_v1/representations.rb +1082 -0
  330. data/generated/google/apis/servicenetworking_v1/service.rb +440 -0
  331. data/generated/google/apis/servicenetworking_v1beta.rb +1 -1
  332. data/generated/google/apis/servicenetworking_v1beta/classes.rb +32 -110
  333. data/generated/google/apis/serviceusage_v1.rb +1 -1
  334. data/generated/google/apis/serviceusage_v1/classes.rb +33 -150
  335. data/generated/google/apis/serviceusage_v1beta1.rb +1 -1
  336. data/generated/google/apis/serviceusage_v1beta1/classes.rb +34 -190
  337. data/generated/google/apis/sheets_v4.rb +1 -1
  338. data/generated/google/apis/sheets_v4/classes.rb +115 -26
  339. data/generated/google/apis/slides_v1.rb +1 -1
  340. data/generated/google/apis/slides_v1/classes.rb +2 -2
  341. data/generated/google/apis/sourcerepo_v1.rb +1 -1
  342. data/generated/google/apis/sourcerepo_v1/classes.rb +1 -1
  343. data/generated/google/apis/spanner_v1.rb +1 -1
  344. data/generated/google/apis/spanner_v1/classes.rb +171 -0
  345. data/generated/google/apis/spanner_v1/representations.rb +49 -0
  346. data/generated/google/apis/spanner_v1/service.rb +51 -1
  347. data/generated/google/apis/speech_v1.rb +1 -1
  348. data/generated/google/apis/speech_v1/classes.rb +107 -10
  349. data/generated/google/apis/speech_v1/representations.rb +24 -0
  350. data/generated/google/apis/speech_v1p1beta1.rb +1 -1
  351. data/generated/google/apis/speech_v1p1beta1/classes.rb +16 -10
  352. data/generated/google/apis/speech_v1p1beta1/representations.rb +1 -0
  353. data/generated/google/apis/sqladmin_v1beta4.rb +1 -1
  354. data/generated/google/apis/sqladmin_v1beta4/classes.rb +11 -15
  355. data/generated/google/apis/sqladmin_v1beta4/representations.rb +1 -0
  356. data/generated/google/apis/storage_v1.rb +1 -1
  357. data/generated/google/apis/storage_v1/classes.rb +57 -4
  358. data/generated/google/apis/storage_v1/representations.rb +19 -1
  359. data/generated/google/apis/storagetransfer_v1.rb +2 -2
  360. data/generated/google/apis/storagetransfer_v1/classes.rb +28 -21
  361. data/generated/google/apis/storagetransfer_v1/service.rb +4 -4
  362. data/generated/google/apis/streetviewpublish_v1.rb +1 -1
  363. data/generated/google/apis/streetviewpublish_v1/classes.rb +26 -26
  364. data/generated/google/apis/streetviewpublish_v1/service.rb +27 -31
  365. data/generated/google/apis/tagmanager_v1.rb +1 -1
  366. data/generated/google/apis/tagmanager_v1/service.rb +0 -46
  367. data/generated/google/apis/tagmanager_v2.rb +1 -1
  368. data/generated/google/apis/tagmanager_v2/classes.rb +197 -292
  369. data/generated/google/apis/tagmanager_v2/representations.rb +62 -103
  370. data/generated/google/apis/tagmanager_v2/service.rb +219 -181
  371. data/generated/google/apis/tasks_v1.rb +2 -2
  372. data/generated/google/apis/tasks_v1/service.rb +5 -5
  373. data/generated/google/apis/testing_v1.rb +1 -1
  374. data/generated/google/apis/testing_v1/classes.rb +13 -13
  375. data/generated/google/apis/toolresults_v1beta3.rb +1 -1
  376. data/generated/google/apis/toolresults_v1beta3/classes.rb +92 -0
  377. data/generated/google/apis/toolresults_v1beta3/representations.rb +47 -0
  378. data/generated/google/apis/tpu_v1.rb +1 -1
  379. data/generated/google/apis/tpu_v1/classes.rb +10 -10
  380. data/generated/google/apis/tpu_v1alpha1.rb +1 -1
  381. data/generated/google/apis/tpu_v1alpha1/classes.rb +10 -10
  382. data/generated/google/apis/vault_v1.rb +1 -1
  383. data/generated/google/apis/vault_v1/classes.rb +7 -0
  384. data/generated/google/apis/vault_v1/representations.rb +1 -0
  385. data/generated/google/apis/videointelligence_v1.rb +3 -2
  386. data/generated/google/apis/videointelligence_v1/classes.rb +2193 -350
  387. data/generated/google/apis/videointelligence_v1/representations.rb +805 -6
  388. data/generated/google/apis/videointelligence_v1/service.rb +2 -1
  389. data/generated/google/apis/videointelligence_v1beta2.rb +3 -2
  390. data/generated/google/apis/videointelligence_v1beta2/classes.rb +2448 -605
  391. data/generated/google/apis/videointelligence_v1beta2/representations.rb +806 -7
  392. data/generated/google/apis/videointelligence_v1beta2/service.rb +2 -1
  393. data/generated/google/apis/videointelligence_v1p1beta1.rb +3 -2
  394. data/generated/google/apis/videointelligence_v1p1beta1/classes.rb +2422 -579
  395. data/generated/google/apis/videointelligence_v1p1beta1/representations.rb +806 -7
  396. data/generated/google/apis/videointelligence_v1p1beta1/service.rb +2 -1
  397. data/generated/google/apis/videointelligence_v1p2beta1.rb +3 -2
  398. data/generated/google/apis/videointelligence_v1p2beta1/classes.rb +2645 -830
  399. data/generated/google/apis/videointelligence_v1p2beta1/representations.rb +796 -12
  400. data/generated/google/apis/videointelligence_v1p2beta1/service.rb +2 -1
  401. data/generated/google/apis/videointelligence_v1p3beta1.rb +36 -0
  402. data/generated/google/apis/videointelligence_v1p3beta1/classes.rb +4687 -0
  403. data/generated/google/apis/videointelligence_v1p3beta1/representations.rb +2005 -0
  404. data/generated/google/apis/videointelligence_v1p3beta1/service.rb +94 -0
  405. data/generated/google/apis/vision_v1.rb +1 -1
  406. data/generated/google/apis/vision_v1/classes.rb +1977 -40
  407. data/generated/google/apis/vision_v1/representations.rb +833 -0
  408. data/generated/google/apis/vision_v1p1beta1.rb +1 -1
  409. data/generated/google/apis/vision_v1p1beta1/classes.rb +1972 -35
  410. data/generated/google/apis/vision_v1p1beta1/representations.rb +833 -0
  411. data/generated/google/apis/vision_v1p2beta1.rb +1 -1
  412. data/generated/google/apis/vision_v1p2beta1/classes.rb +1972 -35
  413. data/generated/google/apis/vision_v1p2beta1/representations.rb +833 -0
  414. data/generated/google/apis/websecurityscanner_v1beta.rb +34 -0
  415. data/generated/google/apis/websecurityscanner_v1beta/classes.rb +973 -0
  416. data/generated/google/apis/websecurityscanner_v1beta/representations.rb +452 -0
  417. data/generated/google/apis/websecurityscanner_v1beta/service.rb +548 -0
  418. data/generated/google/apis/youtube_partner_v1.rb +1 -1
  419. data/generated/google/apis/youtubereporting_v1.rb +1 -1
  420. data/lib/google/apis/core/http_command.rb +1 -0
  421. data/lib/google/apis/generator/model.rb +1 -1
  422. data/lib/google/apis/version.rb +1 -1
  423. metadata +39 -8
  424. data/generated/google/apis/partners_v2/classes.rb +0 -2260
  425. data/generated/google/apis/partners_v2/representations.rb +0 -905
  426. data/generated/google/apis/partners_v2/service.rb +0 -1077
@@ -25,7 +25,7 @@ module Google
25
25
  # @see https://cloud.google.com/filestore/
26
26
  module FileV1beta1
27
27
  VERSION = 'V1beta1'
28
- REVISION = '20180925'
28
+ REVISION = '20190312'
29
29
 
30
30
  # View and manage your data across Google Cloud Platform services
31
31
  AUTH_CLOUD_PLATFORM = 'https://www.googleapis.com/auth/cloud-platform'
@@ -357,14 +357,14 @@ module Google
357
357
  attr_accessor :done
358
358
  alias_method :done?, :done
359
359
 
360
- # The `Status` type defines a logical error model that is suitable for different
361
- # programming environments, including REST APIs and RPC APIs. It is used by
362
- # [gRPC](https://github.com/grpc). The error model is designed to be:
360
+ # The `Status` type defines a logical error model that is suitable for
361
+ # different programming environments, including REST APIs and RPC APIs. It is
362
+ # used by [gRPC](https://github.com/grpc). The error model is designed to be:
363
363
  # - Simple to use and understand for most users
364
364
  # - Flexible enough to meet unexpected needs
365
365
  # # Overview
366
- # The `Status` message contains three pieces of data: error code, error message,
367
- # and error details. The error code should be an enum value of
366
+ # The `Status` message contains three pieces of data: error code, error
367
+ # message, and error details. The error code should be an enum value of
368
368
  # google.rpc.Code, but it may accept additional error codes if needed. The
369
369
  # error message should be a developer-facing English message that helps
370
370
  # developers *understand* and *resolve* the error. If a localized user-facing
@@ -500,14 +500,14 @@ module Google
500
500
  end
501
501
  end
502
502
 
503
- # The `Status` type defines a logical error model that is suitable for different
504
- # programming environments, including REST APIs and RPC APIs. It is used by
505
- # [gRPC](https://github.com/grpc). The error model is designed to be:
503
+ # The `Status` type defines a logical error model that is suitable for
504
+ # different programming environments, including REST APIs and RPC APIs. It is
505
+ # used by [gRPC](https://github.com/grpc). The error model is designed to be:
506
506
  # - Simple to use and understand for most users
507
507
  # - Flexible enough to meet unexpected needs
508
508
  # # Overview
509
- # The `Status` message contains three pieces of data: error code, error message,
510
- # and error details. The error code should be an enum value of
509
+ # The `Status` message contains three pieces of data: error code, error
510
+ # message, and error details. The error code should be an enum value of
511
511
  # google.rpc.Code, but it may accept additional error codes if needed. The
512
512
  # error message should be a developer-facing English message that helps
513
513
  # developers *understand* and *resolve* the error. If a localized user-facing
@@ -25,7 +25,7 @@ module Google
25
25
  # @see https://firebase.google.com/docs/dynamic-links/
26
26
  module FirebasedynamiclinksV1
27
27
  VERSION = 'V1'
28
- REVISION = '20190105'
28
+ REVISION = '20190304'
29
29
 
30
30
  # View and administer all your Firebase data and settings
31
31
  AUTH_FIREBASE = 'https://www.googleapis.com/auth/firebase'
@@ -27,8 +27,9 @@ module Google
27
27
  include Google::Apis::Core::Hashable
28
28
 
29
29
  # Parameters for Google Play Campaign Measurements.
30
- # [Learn more](https://developers.google.com/analytics/devguides/collection/
31
- # android/v4/campaigns#campaign-params)
30
+ # [Learn
31
+ # more](https://developers.google.com/analytics/devguides/collection/android/v4/
32
+ # campaigns#campaign-params)
32
33
  # Corresponds to the JSON property `googlePlayAnalytics`
33
34
  # @return [Google::Apis::FirebasedynamiclinksV1::GooglePlayAnalytics]
34
35
  attr_accessor :google_play_analytics
@@ -377,8 +378,9 @@ module Google
377
378
  attr_accessor :domain_uri_prefix
378
379
 
379
380
  # Dynamic Links domain that the project owns, e.g. abcd.app.goo.gl
380
- # [Learn more](https://firebase.google.com/docs/dynamic-links/android/receive)
381
- # on how to set up Dynamic Link domain associated with your Firebase project.
381
+ # [Learn
382
+ # more](https://firebase.google.com/docs/dynamic-links/android/receive) on
383
+ # how to set up Dynamic Link domain associated with your Firebase project.
382
384
  # Required if missing domain_uri_prefix.
383
385
  # Corresponds to the JSON property `dynamicLinkDomain`
384
386
  # @return [String]
@@ -764,15 +766,16 @@ module Google
764
766
  end
765
767
 
766
768
  # Parameters for Google Play Campaign Measurements.
767
- # [Learn more](https://developers.google.com/analytics/devguides/collection/
768
- # android/v4/campaigns#campaign-params)
769
+ # [Learn
770
+ # more](https://developers.google.com/analytics/devguides/collection/android/v4/
771
+ # campaigns#campaign-params)
769
772
  class GooglePlayAnalytics
770
773
  include Google::Apis::Core::Hashable
771
774
 
772
- # [AdWords autotagging parameter](https://support.google.com/analytics/answer/
773
- # 1033981?hl=en);
774
- # used to measure Google AdWords ads. This value is generated dynamically
775
- # and should never be modified.
775
+ # [AdWords autotagging
776
+ # parameter](https://support.google.com/analytics/answer/1033981?hl=en); used
777
+ # to measure Google AdWords ads. This value is generated dynamically and
778
+ # should never be modified.
776
779
  # Corresponds to the JSON property `gclid`
777
780
  # @return [String]
778
781
  attr_accessor :gclid
@@ -26,7 +26,7 @@ module Google
26
26
  # @see https://firebase.google.com/docs/storage/security
27
27
  module FirebaserulesV1
28
28
  VERSION = 'V1'
29
- REVISION = '20181005'
29
+ REVISION = '20190319'
30
30
 
31
31
  # View and manage your data across Google Cloud Platform services
32
32
  AUTH_CLOUD_PLATFORM = 'https://www.googleapis.com/auth/cloud-platform'
@@ -464,7 +464,7 @@ module Google
464
464
  # `Ruleset.name`.
465
465
  # Filters on `Ruleset.create_time` should use the `date` function which
466
466
  # parses strings that conform to the RFC 3339 date/time specifications.
467
- # Example: `create_time > date("2017-01-01") AND name=UUID-*`
467
+ # Example: `create_time > date("2017-01-01T00:00:00Z") AND name=UUID-*`
468
468
  # @param [Fixnum] page_size
469
469
  # Page size to load. Maximum of 100. Defaults to 10.
470
470
  # Note: `page_size` is just a hint and the service may choose to load less
@@ -25,7 +25,7 @@ module Google
25
25
  # @see https://developers.google.com/fit/rest/
26
26
  module FitnessV1
27
27
  VERSION = 'V1'
28
- REVISION = '20190109'
28
+ REVISION = '20190312'
29
29
 
30
30
  # View your activity information in Google Fit
31
31
  AUTH_FITNESS_ACTIVITY_READ = 'https://www.googleapis.com/auth/fitness.activity.read'
@@ -387,6 +387,9 @@ module Google
387
387
  # If the data point is contained in a dataset for a derived data source, this
388
388
  # field will be populated with the data source stream ID that created the data
389
389
  # point originally.
390
+ # WARNING: do not rely on this field for anything other than debugging. The
391
+ # value of this field, if it is set at all, is an implementation detail and is
392
+ # not guaranteed to remain consistent.
390
393
  # Corresponds to the JSON property `originDataSourceId`
391
394
  # @return [String]
392
395
  attr_accessor :origin_data_source_id
@@ -210,50 +210,6 @@ module Google
210
210
  execute_or_queue_command(command, &block)
211
211
  end
212
212
 
213
- # Updates the specified data source. The dataStreamId, dataType, type,
214
- # dataStreamName, and device properties with the exception of version, cannot be
215
- # modified.
216
- # Data sources are identified by their dataStreamId. This method supports patch
217
- # semantics.
218
- # @param [String] user_id
219
- # Update the data source for the person identified. Use me to indicate the
220
- # authenticated user. Only me is supported at this time.
221
- # @param [String] data_source_id
222
- # The data stream ID of the data source to update.
223
- # @param [Google::Apis::FitnessV1::DataSource] data_source_object
224
- # @param [String] fields
225
- # Selector specifying which fields to include in a partial response.
226
- # @param [String] quota_user
227
- # An opaque string that represents a user for quota purposes. Must not exceed 40
228
- # characters.
229
- # @param [String] user_ip
230
- # Deprecated. Please use quotaUser instead.
231
- # @param [Google::Apis::RequestOptions] options
232
- # Request-specific options
233
- #
234
- # @yield [result, err] Result & error if block supplied
235
- # @yieldparam result [Google::Apis::FitnessV1::DataSource] parsed result object
236
- # @yieldparam err [StandardError] error object if request failed
237
- #
238
- # @return [Google::Apis::FitnessV1::DataSource]
239
- #
240
- # @raise [Google::Apis::ServerError] An error occurred on the server and the request can be retried
241
- # @raise [Google::Apis::ClientError] The request is invalid and should not be retried without modification
242
- # @raise [Google::Apis::AuthorizationError] Authorization is required
243
- def patch_user_data_source(user_id, data_source_id, data_source_object = nil, fields: nil, quota_user: nil, user_ip: nil, options: nil, &block)
244
- command = make_simple_command(:patch, '{userId}/dataSources/{dataSourceId}', options)
245
- command.request_representation = Google::Apis::FitnessV1::DataSource::Representation
246
- command.request_object = data_source_object
247
- command.response_representation = Google::Apis::FitnessV1::DataSource::Representation
248
- command.response_class = Google::Apis::FitnessV1::DataSource
249
- command.params['userId'] = user_id unless user_id.nil?
250
- command.params['dataSourceId'] = data_source_id unless data_source_id.nil?
251
- command.query['fields'] = fields unless fields.nil?
252
- command.query['quotaUser'] = quota_user unless quota_user.nil?
253
- command.query['userIp'] = user_ip unless user_ip.nil?
254
- execute_or_queue_command(command, &block)
255
- end
256
-
257
213
  # Updates the specified data source. The dataStreamId, dataType, type,
258
214
  # dataStreamName, and device properties with the exception of version, cannot be
259
215
  # modified.
@@ -603,7 +559,7 @@ module Google
603
559
  # . If specified, the API returns sessions modified since this time. The page
604
560
  # token is ignored if either start or end time is specified. If none of start
605
561
  # time, end time, and the page token is specified, sessions modified in the last
606
- # 7 days are returned.
562
+ # 30 days are returned.
607
563
  # @param [String] start_time
608
564
  # An RFC3339 timestamp. Only sessions ending between the start and end times
609
565
  # will be included in the response.
@@ -25,9 +25,9 @@ module Google
25
25
  # @see https://developers.google.com/games/services
26
26
  module GamesManagementV1management
27
27
  VERSION = 'V1management'
28
- REVISION = '20181113'
28
+ REVISION = '20190222'
29
29
 
30
- # Share your Google+ profile information and view and manage your game activity
30
+ # Create, edit, and delete your Google Play Games activity
31
31
  AUTH_GAMES = 'https://www.googleapis.com/auth/games'
32
32
  end
33
33
  end
@@ -25,12 +25,12 @@ module Google
25
25
  # @see https://developers.google.com/games/services/
26
26
  module GamesV1
27
27
  VERSION = 'V1'
28
- REVISION = '20190131'
28
+ REVISION = '20190222'
29
29
 
30
30
  # View and manage its own configuration data in your Google Drive
31
31
  AUTH_DRIVE_APPDATA = 'https://www.googleapis.com/auth/drive.appdata'
32
32
 
33
- # Share your Google+ profile information and view and manage your game activity
33
+ # Create, edit, and delete your Google Play Games activity
34
34
  AUTH_GAMES = 'https://www.googleapis.com/auth/games'
35
35
 
36
36
  # Know who you are on Google
@@ -25,22 +25,13 @@ module Google
25
25
  # @see https://cloud.google.com/genomics
26
26
  module GenomicsV1
27
27
  VERSION = 'V1'
28
- REVISION = '20181017'
29
-
30
- # View and manage your data in Google BigQuery
31
- AUTH_BIGQUERY = 'https://www.googleapis.com/auth/bigquery'
28
+ REVISION = '20190323'
32
29
 
33
30
  # View and manage your data across Google Cloud Platform services
34
31
  AUTH_CLOUD_PLATFORM = 'https://www.googleapis.com/auth/cloud-platform'
35
32
 
36
- # Manage your data in Google Cloud Storage
37
- AUTH_DEVSTORAGE_READ_WRITE = 'https://www.googleapis.com/auth/devstorage.read_write'
38
-
39
33
  # View and manage Genomics data
40
34
  AUTH_GENOMICS = 'https://www.googleapis.com/auth/genomics'
41
-
42
- # View Genomics data
43
- AUTH_GENOMICS_READONLY = 'https://www.googleapis.com/auth/genomics.readonly'
44
35
  end
45
36
  end
46
37
  end
@@ -22,322 +22,6 @@ module Google
22
22
  module Apis
23
23
  module GenomicsV1
24
24
 
25
- # An annotation describes a region of reference genome. The value of an
26
- # annotation may be one of several canonical types, supplemented by arbitrary
27
- # info tags. An annotation is not inherently associated with a specific
28
- # sample or individual (though a client could choose to use annotations in
29
- # this way). Example canonical annotation types are `GENE` and
30
- # `VARIANT`.
31
- class Annotation
32
- include Google::Apis::Core::Hashable
33
-
34
- # The annotation set to which this annotation belongs.
35
- # Corresponds to the JSON property `annotationSetId`
36
- # @return [String]
37
- attr_accessor :annotation_set_id
38
-
39
- # The end position of the range on the reference, 0-based exclusive.
40
- # Corresponds to the JSON property `end`
41
- # @return [Fixnum]
42
- attr_accessor :end
43
-
44
- # The server-generated annotation ID, unique across all annotations.
45
- # Corresponds to the JSON property `id`
46
- # @return [String]
47
- attr_accessor :id
48
-
49
- # A map of additional read alignment information. This must be of the form
50
- # map<string, string[]> (string key mapping to a list of string values).
51
- # Corresponds to the JSON property `info`
52
- # @return [Hash<String,Array<Object>>]
53
- attr_accessor :info
54
-
55
- # The display name of this annotation.
56
- # Corresponds to the JSON property `name`
57
- # @return [String]
58
- attr_accessor :name
59
-
60
- # The ID of the Google Genomics reference associated with this range.
61
- # Corresponds to the JSON property `referenceId`
62
- # @return [String]
63
- attr_accessor :reference_id
64
-
65
- # The display name corresponding to the reference specified by
66
- # `referenceId`, for example `chr1`, `1`, or `chrX`.
67
- # Corresponds to the JSON property `referenceName`
68
- # @return [String]
69
- attr_accessor :reference_name
70
-
71
- # Whether this range refers to the reverse strand, as opposed to the forward
72
- # strand. Note that regardless of this field, the start/end position of the
73
- # range always refer to the forward strand.
74
- # Corresponds to the JSON property `reverseStrand`
75
- # @return [Boolean]
76
- attr_accessor :reverse_strand
77
- alias_method :reverse_strand?, :reverse_strand
78
-
79
- # The start position of the range on the reference, 0-based inclusive.
80
- # Corresponds to the JSON property `start`
81
- # @return [Fixnum]
82
- attr_accessor :start
83
-
84
- # A transcript represents the assertion that a particular region of the
85
- # reference genome may be transcribed as RNA.
86
- # Corresponds to the JSON property `transcript`
87
- # @return [Google::Apis::GenomicsV1::Transcript]
88
- attr_accessor :transcript
89
-
90
- # The data type for this annotation. Must match the containing annotation
91
- # set's type.
92
- # Corresponds to the JSON property `type`
93
- # @return [String]
94
- attr_accessor :type
95
-
96
- # A variant annotation, which describes the effect of a variant on the
97
- # genome, the coding sequence, and/or higher level consequences at the
98
- # organism level e.g. pathogenicity. This field is only set for annotations
99
- # of type `VARIANT`.
100
- # Corresponds to the JSON property `variant`
101
- # @return [Google::Apis::GenomicsV1::VariantAnnotation]
102
- attr_accessor :variant
103
-
104
- def initialize(**args)
105
- update!(**args)
106
- end
107
-
108
- # Update properties of this object
109
- def update!(**args)
110
- @annotation_set_id = args[:annotation_set_id] if args.key?(:annotation_set_id)
111
- @end = args[:end] if args.key?(:end)
112
- @id = args[:id] if args.key?(:id)
113
- @info = args[:info] if args.key?(:info)
114
- @name = args[:name] if args.key?(:name)
115
- @reference_id = args[:reference_id] if args.key?(:reference_id)
116
- @reference_name = args[:reference_name] if args.key?(:reference_name)
117
- @reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
118
- @start = args[:start] if args.key?(:start)
119
- @transcript = args[:transcript] if args.key?(:transcript)
120
- @type = args[:type] if args.key?(:type)
121
- @variant = args[:variant] if args.key?(:variant)
122
- end
123
- end
124
-
125
- # An annotation set is a logical grouping of annotations that share consistent
126
- # type information and provenance. Examples of annotation sets include 'all
127
- # genes from refseq', and 'all variant annotations from ClinVar'.
128
- class AnnotationSet
129
- include Google::Apis::Core::Hashable
130
-
131
- # The dataset to which this annotation set belongs.
132
- # Corresponds to the JSON property `datasetId`
133
- # @return [String]
134
- attr_accessor :dataset_id
135
-
136
- # The server-generated annotation set ID, unique across all annotation sets.
137
- # Corresponds to the JSON property `id`
138
- # @return [String]
139
- attr_accessor :id
140
-
141
- # A map of additional read alignment information. This must be of the form
142
- # map<string, string[]> (string key mapping to a list of string values).
143
- # Corresponds to the JSON property `info`
144
- # @return [Hash<String,Array<Object>>]
145
- attr_accessor :info
146
-
147
- # The display name for this annotation set.
148
- # Corresponds to the JSON property `name`
149
- # @return [String]
150
- attr_accessor :name
151
-
152
- # The ID of the reference set that defines the coordinate space for this
153
- # set's annotations.
154
- # Corresponds to the JSON property `referenceSetId`
155
- # @return [String]
156
- attr_accessor :reference_set_id
157
-
158
- # The source URI describing the file from which this annotation set was
159
- # generated, if any.
160
- # Corresponds to the JSON property `sourceUri`
161
- # @return [String]
162
- attr_accessor :source_uri
163
-
164
- # The type of annotations contained within this set.
165
- # Corresponds to the JSON property `type`
166
- # @return [String]
167
- attr_accessor :type
168
-
169
- def initialize(**args)
170
- update!(**args)
171
- end
172
-
173
- # Update properties of this object
174
- def update!(**args)
175
- @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
176
- @id = args[:id] if args.key?(:id)
177
- @info = args[:info] if args.key?(:info)
178
- @name = args[:name] if args.key?(:name)
179
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
180
- @source_uri = args[:source_uri] if args.key?(:source_uri)
181
- @type = args[:type] if args.key?(:type)
182
- end
183
- end
184
-
185
- #
186
- class BatchCreateAnnotationsRequest
187
- include Google::Apis::Core::Hashable
188
-
189
- # The annotations to be created. At most 4096 can be specified in a single
190
- # request.
191
- # Corresponds to the JSON property `annotations`
192
- # @return [Array<Google::Apis::GenomicsV1::Annotation>]
193
- attr_accessor :annotations
194
-
195
- # A unique request ID which enables the server to detect duplicated requests.
196
- # If provided, duplicated requests will result in the same response; if not
197
- # provided, duplicated requests may result in duplicated data. For a given
198
- # annotation set, callers should not reuse `request_id`s when writing
199
- # different batches of annotations - behavior in this case is undefined.
200
- # A common approach is to use a UUID. For batch jobs where worker crashes are
201
- # a possibility, consider using some unique variant of a worker or run ID.
202
- # Corresponds to the JSON property `requestId`
203
- # @return [String]
204
- attr_accessor :request_id
205
-
206
- def initialize(**args)
207
- update!(**args)
208
- end
209
-
210
- # Update properties of this object
211
- def update!(**args)
212
- @annotations = args[:annotations] if args.key?(:annotations)
213
- @request_id = args[:request_id] if args.key?(:request_id)
214
- end
215
- end
216
-
217
- #
218
- class BatchCreateAnnotationsResponse
219
- include Google::Apis::Core::Hashable
220
-
221
- # The resulting per-annotation entries, ordered consistently with the
222
- # original request.
223
- # Corresponds to the JSON property `entries`
224
- # @return [Array<Google::Apis::GenomicsV1::Entry>]
225
- attr_accessor :entries
226
-
227
- def initialize(**args)
228
- update!(**args)
229
- end
230
-
231
- # Update properties of this object
232
- def update!(**args)
233
- @entries = args[:entries] if args.key?(:entries)
234
- end
235
- end
236
-
237
- # Associates `members` with a `role`.
238
- class Binding
239
- include Google::Apis::Core::Hashable
240
-
241
- # Represents an expression text. Example:
242
- # title: "User account presence"
243
- # description: "Determines whether the request has a user account"
244
- # expression: "size(request.user) > 0"
245
- # Corresponds to the JSON property `condition`
246
- # @return [Google::Apis::GenomicsV1::Expr]
247
- attr_accessor :condition
248
-
249
- # Specifies the identities requesting access for a Cloud Platform resource.
250
- # `members` can have the following values:
251
- # * `allUsers`: A special identifier that represents anyone who is
252
- # on the internet; with or without a Google account.
253
- # * `allAuthenticatedUsers`: A special identifier that represents anyone
254
- # who is authenticated with a Google account or a service account.
255
- # * `user:`emailid``: An email address that represents a specific Google
256
- # account. For example, `alice@gmail.com` .
257
- # * `serviceAccount:`emailid``: An email address that represents a service
258
- # account. For example, `my-other-app@appspot.gserviceaccount.com`.
259
- # * `group:`emailid``: An email address that represents a Google group.
260
- # For example, `admins@example.com`.
261
- # * `domain:`domain``: A Google Apps domain name that represents all the
262
- # users of that domain. For example, `google.com` or `example.com`.
263
- # Corresponds to the JSON property `members`
264
- # @return [Array<String>]
265
- attr_accessor :members
266
-
267
- # Role that is assigned to `members`.
268
- # For example, `roles/viewer`, `roles/editor`, or `roles/owner`.
269
- # Corresponds to the JSON property `role`
270
- # @return [String]
271
- attr_accessor :role
272
-
273
- def initialize(**args)
274
- update!(**args)
275
- end
276
-
277
- # Update properties of this object
278
- def update!(**args)
279
- @condition = args[:condition] if args.key?(:condition)
280
- @members = args[:members] if args.key?(:members)
281
- @role = args[:role] if args.key?(:role)
282
- end
283
- end
284
-
285
- # A call set is a collection of variant calls, typically for one sample. It
286
- # belongs to a variant set.
287
- class CallSet
288
- include Google::Apis::Core::Hashable
289
-
290
- # The date this call set was created in milliseconds from the epoch.
291
- # Corresponds to the JSON property `created`
292
- # @return [Fixnum]
293
- attr_accessor :created
294
-
295
- # The server-generated call set ID, unique across all call sets.
296
- # Corresponds to the JSON property `id`
297
- # @return [String]
298
- attr_accessor :id
299
-
300
- # A map of additional call set information. This must be of the form
301
- # map<string, string[]> (string key mapping to a list of string values).
302
- # Corresponds to the JSON property `info`
303
- # @return [Hash<String,Array<Object>>]
304
- attr_accessor :info
305
-
306
- # The call set name.
307
- # Corresponds to the JSON property `name`
308
- # @return [String]
309
- attr_accessor :name
310
-
311
- # The sample ID this call set corresponds to.
312
- # Corresponds to the JSON property `sampleId`
313
- # @return [String]
314
- attr_accessor :sample_id
315
-
316
- # The IDs of the variant sets this call set belongs to. This field must
317
- # have exactly length one, as a call set belongs to a single variant set.
318
- # This field is repeated for compatibility with the
319
- # [GA4GH 0.5.1
320
- # API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/
321
- # variants.avdl#L76).
322
- # Corresponds to the JSON property `variantSetIds`
323
- # @return [Array<String>]
324
- attr_accessor :variant_set_ids
325
-
326
- def initialize(**args)
327
- update!(**args)
328
- end
329
-
330
- # Update properties of this object
331
- def update!(**args)
332
- @created = args[:created] if args.key?(:created)
333
- @id = args[:id] if args.key?(:id)
334
- @info = args[:info] if args.key?(:info)
335
- @name = args[:name] if args.key?(:name)
336
- @sample_id = args[:sample_id] if args.key?(:sample_id)
337
- @variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
338
- end
339
- end
340
-
341
25
  # The request message for Operations.CancelOperation.
342
26
  class CancelOperationRequest
343
27
  include Google::Apis::Core::Hashable
@@ -351,108 +35,6 @@ module Google
351
35
  end
352
36
  end
353
37
 
354
- # A single CIGAR operation.
355
- class CigarUnit
356
- include Google::Apis::Core::Hashable
357
-
358
- #
359
- # Corresponds to the JSON property `operation`
360
- # @return [String]
361
- attr_accessor :operation
362
-
363
- # The number of genomic bases that the operation runs for. Required.
364
- # Corresponds to the JSON property `operationLength`
365
- # @return [Fixnum]
366
- attr_accessor :operation_length
367
-
368
- # `referenceSequence` is only used at mismatches
369
- # (`SEQUENCE_MISMATCH`) and deletions (`DELETE`).
370
- # Filling this field replaces SAM's MD tag. If the relevant information is
371
- # not available, this field is unset.
372
- # Corresponds to the JSON property `referenceSequence`
373
- # @return [String]
374
- attr_accessor :reference_sequence
375
-
376
- def initialize(**args)
377
- update!(**args)
378
- end
379
-
380
- # Update properties of this object
381
- def update!(**args)
382
- @operation = args[:operation] if args.key?(:operation)
383
- @operation_length = args[:operation_length] if args.key?(:operation_length)
384
- @reference_sequence = args[:reference_sequence] if args.key?(:reference_sequence)
385
- end
386
- end
387
-
388
- #
389
- class ClinicalCondition
390
- include Google::Apis::Core::Hashable
391
-
392
- # The MedGen concept id associated with this gene.
393
- # Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/
394
- # Corresponds to the JSON property `conceptId`
395
- # @return [String]
396
- attr_accessor :concept_id
397
-
398
- # The set of external IDs for this condition.
399
- # Corresponds to the JSON property `externalIds`
400
- # @return [Array<Google::Apis::GenomicsV1::ExternalId>]
401
- attr_accessor :external_ids
402
-
403
- # A set of names for the condition.
404
- # Corresponds to the JSON property `names`
405
- # @return [Array<String>]
406
- attr_accessor :names
407
-
408
- # The OMIM id for this condition.
409
- # Search for these IDs at http://omim.org/
410
- # Corresponds to the JSON property `omimId`
411
- # @return [String]
412
- attr_accessor :omim_id
413
-
414
- def initialize(**args)
415
- update!(**args)
416
- end
417
-
418
- # Update properties of this object
419
- def update!(**args)
420
- @concept_id = args[:concept_id] if args.key?(:concept_id)
421
- @external_ids = args[:external_ids] if args.key?(:external_ids)
422
- @names = args[:names] if args.key?(:names)
423
- @omim_id = args[:omim_id] if args.key?(:omim_id)
424
- end
425
- end
426
-
427
- #
428
- class CodingSequence
429
- include Google::Apis::Core::Hashable
430
-
431
- # The end of the coding sequence on this annotation's reference sequence,
432
- # 0-based exclusive. Note that this position is relative to the reference
433
- # start, and *not* the containing annotation start.
434
- # Corresponds to the JSON property `end`
435
- # @return [Fixnum]
436
- attr_accessor :end
437
-
438
- # The start of the coding sequence on this annotation's reference sequence,
439
- # 0-based inclusive. Note that this position is relative to the reference
440
- # start, and *not* the containing annotation start.
441
- # Corresponds to the JSON property `start`
442
- # @return [Fixnum]
443
- attr_accessor :start
444
-
445
- def initialize(**args)
446
- update!(**args)
447
- end
448
-
449
- # Update properties of this object
450
- def update!(**args)
451
- @end = args[:end] if args.key?(:end)
452
- @start = args[:start] if args.key?(:start)
453
- end
454
- end
455
-
456
38
  # Describes a Compute Engine resource that is being managed by a running
457
39
  # pipeline.
458
40
  class ComputeEngine
@@ -585,70 +167,6 @@ module Google
585
167
  end
586
168
  end
587
169
 
588
- # A bucket over which read coverage has been precomputed. A bucket corresponds
589
- # to a specific range of the reference sequence.
590
- class CoverageBucket
591
- include Google::Apis::Core::Hashable
592
-
593
- # The average number of reads which are aligned to each individual
594
- # reference base in this bucket.
595
- # Corresponds to the JSON property `meanCoverage`
596
- # @return [Float]
597
- attr_accessor :mean_coverage
598
-
599
- # A 0-based half-open genomic coordinate range for search requests.
600
- # Corresponds to the JSON property `range`
601
- # @return [Google::Apis::GenomicsV1::Range]
602
- attr_accessor :range
603
-
604
- def initialize(**args)
605
- update!(**args)
606
- end
607
-
608
- # Update properties of this object
609
- def update!(**args)
610
- @mean_coverage = args[:mean_coverage] if args.key?(:mean_coverage)
611
- @range = args[:range] if args.key?(:range)
612
- end
613
- end
614
-
615
- # A Dataset is a collection of genomic data.
616
- class Dataset
617
- include Google::Apis::Core::Hashable
618
-
619
- # The time this dataset was created, in seconds from the epoch.
620
- # Corresponds to the JSON property `createTime`
621
- # @return [String]
622
- attr_accessor :create_time
623
-
624
- # The server-generated dataset ID, unique across all datasets.
625
- # Corresponds to the JSON property `id`
626
- # @return [String]
627
- attr_accessor :id
628
-
629
- # The dataset name.
630
- # Corresponds to the JSON property `name`
631
- # @return [String]
632
- attr_accessor :name
633
-
634
- # The Google Cloud project ID that this dataset belongs to.
635
- # Corresponds to the JSON property `projectId`
636
- # @return [String]
637
- attr_accessor :project_id
638
-
639
- def initialize(**args)
640
- update!(**args)
641
- end
642
-
643
- # Update properties of this object
644
- def update!(**args)
645
- @create_time = args[:create_time] if args.key?(:create_time)
646
- @id = args[:id] if args.key?(:id)
647
- @name = args[:name] if args.key?(:name)
648
- @project_id = args[:project_id] if args.key?(:project_id)
649
- end
650
- end
651
-
652
170
  # An event generated whenever a resource limitation or transient error
653
171
  # delays execution of a pipeline that was otherwise ready to run.
654
172
  class DelayedEvent
@@ -699,76 +217,8 @@ module Google
699
217
  end
700
218
  end
701
219
 
702
- #
703
- class Entry
704
- include Google::Apis::Core::Hashable
705
-
706
- # An annotation describes a region of reference genome. The value of an
707
- # annotation may be one of several canonical types, supplemented by arbitrary
708
- # info tags. An annotation is not inherently associated with a specific
709
- # sample or individual (though a client could choose to use annotations in
710
- # this way). Example canonical annotation types are `GENE` and
711
- # `VARIANT`.
712
- # Corresponds to the JSON property `annotation`
713
- # @return [Google::Apis::GenomicsV1::Annotation]
714
- attr_accessor :annotation
715
-
716
- # The `Status` type defines a logical error model that is suitable for different
717
- # programming environments, including REST APIs and RPC APIs. It is used by
718
- # [gRPC](https://github.com/grpc). The error model is designed to be:
719
- # - Simple to use and understand for most users
720
- # - Flexible enough to meet unexpected needs
721
- # # Overview
722
- # The `Status` message contains three pieces of data: error code, error message,
723
- # and error details. The error code should be an enum value of
724
- # google.rpc.Code, but it may accept additional error codes if needed. The
725
- # error message should be a developer-facing English message that helps
726
- # developers *understand* and *resolve* the error. If a localized user-facing
727
- # error message is needed, put the localized message in the error details or
728
- # localize it in the client. The optional error details may contain arbitrary
729
- # information about the error. There is a predefined set of error detail types
730
- # in the package `google.rpc` that can be used for common error conditions.
731
- # # Language mapping
732
- # The `Status` message is the logical representation of the error model, but it
733
- # is not necessarily the actual wire format. When the `Status` message is
734
- # exposed in different client libraries and different wire protocols, it can be
735
- # mapped differently. For example, it will likely be mapped to some exceptions
736
- # in Java, but more likely mapped to some error codes in C.
737
- # # Other uses
738
- # The error model and the `Status` message can be used in a variety of
739
- # environments, either with or without APIs, to provide a
740
- # consistent developer experience across different environments.
741
- # Example uses of this error model include:
742
- # - Partial errors. If a service needs to return partial errors to the client,
743
- # it may embed the `Status` in the normal response to indicate the partial
744
- # errors.
745
- # - Workflow errors. A typical workflow has multiple steps. Each step may
746
- # have a `Status` message for error reporting.
747
- # - Batch operations. If a client uses batch request and batch response, the
748
- # `Status` message should be used directly inside batch response, one for
749
- # each error sub-response.
750
- # - Asynchronous operations. If an API call embeds asynchronous operation
751
- # results in its response, the status of those operations should be
752
- # represented directly using the `Status` message.
753
- # - Logging. If some API errors are stored in logs, the message `Status` could
754
- # be used directly after any stripping needed for security/privacy reasons.
755
- # Corresponds to the JSON property `status`
756
- # @return [Google::Apis::GenomicsV1::Status]
757
- attr_accessor :status
758
-
759
- def initialize(**args)
760
- update!(**args)
761
- end
762
-
763
- # Update properties of this object
764
- def update!(**args)
765
- @annotation = args[:annotation] if args.key?(:annotation)
766
- @status = args[:status] if args.key?(:status)
767
- end
768
- end
769
-
770
- # Carries information about events that occur during pipeline execution.
771
- class Event
220
+ # Carries information about events that occur during pipeline execution.
221
+ class Event
772
222
  include Google::Apis::Core::Hashable
773
223
 
774
224
  # A human-readable description of the event. Note that these strings can
@@ -800,81 +250,20 @@ module Google
800
250
  end
801
251
  end
802
252
 
803
- #
804
- class Exon
805
- include Google::Apis::Core::Hashable
806
-
807
- # The end position of the exon on this annotation's reference sequence,
808
- # 0-based exclusive. Note that this is relative to the reference start, and
809
- # *not* the containing annotation start.
810
- # Corresponds to the JSON property `end`
811
- # @return [Fixnum]
812
- attr_accessor :end
813
-
814
- # The frame of this exon. Contains a value of 0, 1, or 2, which indicates
815
- # the offset of the first coding base of the exon within the reading frame
816
- # of the coding DNA sequence, if any. This field is dependent on the
817
- # strandedness of this annotation (see
818
- # Annotation.reverse_strand).
819
- # For forward stranded annotations, this offset is relative to the
820
- # exon.start. For reverse
821
- # strand annotations, this offset is relative to the
822
- # exon.end `- 1`.
823
- # Unset if this exon does not intersect the coding sequence. Upon creation
824
- # of a transcript, the frame must be populated for all or none of the
825
- # coding exons.
826
- # Corresponds to the JSON property `frame`
827
- # @return [Fixnum]
828
- attr_accessor :frame
829
-
830
- # The start position of the exon on this annotation's reference sequence,
831
- # 0-based inclusive. Note that this is relative to the reference start, and
832
- # **not** the containing annotation start.
833
- # Corresponds to the JSON property `start`
834
- # @return [Fixnum]
835
- attr_accessor :start
836
-
837
- def initialize(**args)
838
- update!(**args)
839
- end
840
-
841
- # Update properties of this object
842
- def update!(**args)
843
- @end = args[:end] if args.key?(:end)
844
- @frame = args[:frame] if args.key?(:frame)
845
- @start = args[:start] if args.key?(:start)
846
- end
847
- end
848
-
849
- #
850
- class Experiment
253
+ # An event generated when the execution of a pipeline has failed. Note
254
+ # that other events can continue to occur after this event.
255
+ class FailedEvent
851
256
  include Google::Apis::Core::Hashable
852
257
 
853
- # The instrument model used as part of this experiment. This maps to
854
- # sequencing technology in the SAM spec.
855
- # Corresponds to the JSON property `instrumentModel`
856
- # @return [String]
857
- attr_accessor :instrument_model
858
-
859
- # A client-supplied library identifier; a library is a collection of DNA
860
- # fragments which have been prepared for sequencing from a sample. This
861
- # field is important for quality control as error or bias can be introduced
862
- # during sample preparation.
863
- # Corresponds to the JSON property `libraryId`
864
- # @return [String]
865
- attr_accessor :library_id
866
-
867
- # The platform unit used as part of this experiment, for example
868
- # flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
869
- # @RG PU field in the SAM spec.
870
- # Corresponds to the JSON property `platformUnit`
258
+ # The human-readable description of the cause of the failure.
259
+ # Corresponds to the JSON property `cause`
871
260
  # @return [String]
872
- attr_accessor :platform_unit
261
+ attr_accessor :cause
873
262
 
874
- # The sequencing center used as part of this experiment.
875
- # Corresponds to the JSON property `sequencingCenter`
263
+ # The Google standard error code that best describes this failure.
264
+ # Corresponds to the JSON property `code`
876
265
  # @return [String]
877
- attr_accessor :sequencing_center
266
+ attr_accessor :code
878
267
 
879
268
  def initialize(**args)
880
269
  update!(**args)
@@ -882,36 +271,24 @@ module Google
882
271
 
883
272
  # Update properties of this object
884
273
  def update!(**args)
885
- @instrument_model = args[:instrument_model] if args.key?(:instrument_model)
886
- @library_id = args[:library_id] if args.key?(:library_id)
887
- @platform_unit = args[:platform_unit] if args.key?(:platform_unit)
888
- @sequencing_center = args[:sequencing_center] if args.key?(:sequencing_center)
274
+ @cause = args[:cause] if args.key?(:cause)
275
+ @code = args[:code] if args.key?(:code)
889
276
  end
890
277
  end
891
278
 
892
- # The read group set export request.
893
- class ExportReadGroupSetRequest
279
+ # The response message for Operations.ListOperations.
280
+ class ListOperationsResponse
894
281
  include Google::Apis::Core::Hashable
895
282
 
896
- # Required. A Google Cloud Storage URI for the exported BAM file.
897
- # The currently authenticated user must have write access to the new file.
898
- # An error will be returned if the URI already contains data.
899
- # Corresponds to the JSON property `exportUri`
900
- # @return [String]
901
- attr_accessor :export_uri
902
-
903
- # Required. The Google Cloud project ID that owns this
904
- # export. The caller must have WRITE access to this project.
905
- # Corresponds to the JSON property `projectId`
283
+ # The standard List next-page token.
284
+ # Corresponds to the JSON property `nextPageToken`
906
285
  # @return [String]
907
- attr_accessor :project_id
286
+ attr_accessor :next_page_token
908
287
 
909
- # The reference names to export. If this is not specified, all reference
910
- # sequences, including unmapped reads, are exported.
911
- # Use `*` to export only unmapped reads.
912
- # Corresponds to the JSON property `referenceNames`
913
- # @return [Array<String>]
914
- attr_accessor :reference_names
288
+ # A list of operations that matches the specified filter in the request.
289
+ # Corresponds to the JSON property `operations`
290
+ # @return [Array<Google::Apis::GenomicsV1::Operation>]
291
+ attr_accessor :operations
915
292
 
916
293
  def initialize(**args)
917
294
  update!(**args)
@@ -919,46 +296,84 @@ module Google
919
296
 
920
297
  # Update properties of this object
921
298
  def update!(**args)
922
- @export_uri = args[:export_uri] if args.key?(:export_uri)
923
- @project_id = args[:project_id] if args.key?(:project_id)
924
- @reference_names = args[:reference_names] if args.key?(:reference_names)
299
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
300
+ @operations = args[:operations] if args.key?(:operations)
925
301
  end
926
302
  end
927
303
 
928
- # The variant data export request.
929
- class ExportVariantSetRequest
304
+ # This resource represents a long-running operation that is the result of a
305
+ # network API call.
306
+ class Operation
930
307
  include Google::Apis::Core::Hashable
931
308
 
932
- # Required. The BigQuery dataset to export data to. This dataset must already
933
- # exist. Note that this is distinct from the Genomics concept of "dataset".
934
- # Corresponds to the JSON property `bigqueryDataset`
935
- # @return [String]
936
- attr_accessor :bigquery_dataset
309
+ # If the value is `false`, it means the operation is still in progress.
310
+ # If `true`, the operation is completed, and either `error` or `response` is
311
+ # available.
312
+ # Corresponds to the JSON property `done`
313
+ # @return [Boolean]
314
+ attr_accessor :done
315
+ alias_method :done?, :done
937
316
 
938
- # Required. The BigQuery table to export data to.
939
- # If the table doesn't exist, it will be created. If it already exists, it
940
- # will be overwritten.
941
- # Corresponds to the JSON property `bigqueryTable`
942
- # @return [String]
943
- attr_accessor :bigquery_table
317
+ # The `Status` type defines a logical error model that is suitable for
318
+ # different programming environments, including REST APIs and RPC APIs. It is
319
+ # used by [gRPC](https://github.com/grpc). The error model is designed to be:
320
+ # - Simple to use and understand for most users
321
+ # - Flexible enough to meet unexpected needs
322
+ # # Overview
323
+ # The `Status` message contains three pieces of data: error code, error
324
+ # message, and error details. The error code should be an enum value of
325
+ # google.rpc.Code, but it may accept additional error codes if needed. The
326
+ # error message should be a developer-facing English message that helps
327
+ # developers *understand* and *resolve* the error. If a localized user-facing
328
+ # error message is needed, put the localized message in the error details or
329
+ # localize it in the client. The optional error details may contain arbitrary
330
+ # information about the error. There is a predefined set of error detail types
331
+ # in the package `google.rpc` that can be used for common error conditions.
332
+ # # Language mapping
333
+ # The `Status` message is the logical representation of the error model, but it
334
+ # is not necessarily the actual wire format. When the `Status` message is
335
+ # exposed in different client libraries and different wire protocols, it can be
336
+ # mapped differently. For example, it will likely be mapped to some exceptions
337
+ # in Java, but more likely mapped to some error codes in C.
338
+ # # Other uses
339
+ # The error model and the `Status` message can be used in a variety of
340
+ # environments, either with or without APIs, to provide a
341
+ # consistent developer experience across different environments.
342
+ # Example uses of this error model include:
343
+ # - Partial errors. If a service needs to return partial errors to the client,
344
+ # it may embed the `Status` in the normal response to indicate the partial
345
+ # errors.
346
+ # - Workflow errors. A typical workflow has multiple steps. Each step may
347
+ # have a `Status` message for error reporting.
348
+ # - Batch operations. If a client uses batch request and batch response, the
349
+ # `Status` message should be used directly inside batch response, one for
350
+ # each error sub-response.
351
+ # - Asynchronous operations. If an API call embeds asynchronous operation
352
+ # results in its response, the status of those operations should be
353
+ # represented directly using the `Status` message.
354
+ # - Logging. If some API errors are stored in logs, the message `Status` could
355
+ # be used directly after any stripping needed for security/privacy reasons.
356
+ # Corresponds to the JSON property `error`
357
+ # @return [Google::Apis::GenomicsV1::Status]
358
+ attr_accessor :error
944
359
 
945
- # If provided, only variant call information from the specified call sets
946
- # will be exported. By default all variant calls are exported.
947
- # Corresponds to the JSON property `callSetIds`
948
- # @return [Array<String>]
949
- attr_accessor :call_set_ids
360
+ # An OperationMetadata or Metadata object. This will always be returned with the
361
+ # Operation.
362
+ # Corresponds to the JSON property `metadata`
363
+ # @return [Hash<String,Object>]
364
+ attr_accessor :metadata
950
365
 
951
- # The format for the exported data.
952
- # Corresponds to the JSON property `format`
366
+ # The server-assigned name, which is only unique within the same service that
367
+ # originally returns it. For example&#58; `operations/CJHU7Oi_ChDrveSpBRjfuL-
368
+ # qzoWAgEw`
369
+ # Corresponds to the JSON property `name`
953
370
  # @return [String]
954
- attr_accessor :format
371
+ attr_accessor :name
955
372
 
956
- # Required. The Google Cloud project ID that owns the destination
957
- # BigQuery dataset. The caller must have WRITE access to this project. This
958
- # project will also own the resulting export job.
959
- # Corresponds to the JSON property `projectId`
960
- # @return [String]
961
- attr_accessor :project_id
373
+ # An Empty object.
374
+ # Corresponds to the JSON property `response`
375
+ # @return [Hash<String,Object>]
376
+ attr_accessor :response
962
377
 
963
378
  def initialize(**args)
964
379
  update!(**args)
@@ -966,47 +381,33 @@ module Google
966
381
 
967
382
  # Update properties of this object
968
383
  def update!(**args)
969
- @bigquery_dataset = args[:bigquery_dataset] if args.key?(:bigquery_dataset)
970
- @bigquery_table = args[:bigquery_table] if args.key?(:bigquery_table)
971
- @call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
972
- @format = args[:format] if args.key?(:format)
973
- @project_id = args[:project_id] if args.key?(:project_id)
384
+ @done = args[:done] if args.key?(:done)
385
+ @error = args[:error] if args.key?(:error)
386
+ @metadata = args[:metadata] if args.key?(:metadata)
387
+ @name = args[:name] if args.key?(:name)
388
+ @response = args[:response] if args.key?(:response)
974
389
  end
975
390
  end
976
391
 
977
- # Represents an expression text. Example:
978
- # title: "User account presence"
979
- # description: "Determines whether the request has a user account"
980
- # expression: "size(request.user) > 0"
981
- class Expr
392
+ # An event that occurred during an Operation.
393
+ class OperationEvent
982
394
  include Google::Apis::Core::Hashable
983
395
 
984
- # An optional description of the expression. This is a longer text which
985
- # describes the expression, e.g. when hovered over it in a UI.
396
+ # Required description of event.
986
397
  # Corresponds to the JSON property `description`
987
398
  # @return [String]
988
399
  attr_accessor :description
989
400
 
990
- # Textual representation of an expression in
991
- # Common Expression Language syntax.
992
- # The application context of the containing message determines which
993
- # well-known feature set of CEL is supported.
994
- # Corresponds to the JSON property `expression`
995
- # @return [String]
996
- attr_accessor :expression
997
-
998
- # An optional string indicating the location of the expression for error
999
- # reporting, e.g. a file name and a position in the file.
1000
- # Corresponds to the JSON property `location`
401
+ # Optional time of when event finished. An event can have a start time and no
402
+ # finish time. If an event has a finish time, there must be a start time.
403
+ # Corresponds to the JSON property `endTime`
1001
404
  # @return [String]
1002
- attr_accessor :location
405
+ attr_accessor :end_time
1003
406
 
1004
- # An optional title for the expression, i.e. a short string describing
1005
- # its purpose. This can be used e.g. in UIs which allow to enter the
1006
- # expression.
1007
- # Corresponds to the JSON property `title`
407
+ # Optional time of when event started.
408
+ # Corresponds to the JSON property `startTime`
1008
409
  # @return [String]
1009
- attr_accessor :title
410
+ attr_accessor :start_time
1010
411
 
1011
412
  def initialize(**args)
1012
413
  update!(**args)
@@ -1015,51 +416,65 @@ module Google
1015
416
  # Update properties of this object
1016
417
  def update!(**args)
1017
418
  @description = args[:description] if args.key?(:description)
1018
- @expression = args[:expression] if args.key?(:expression)
1019
- @location = args[:location] if args.key?(:location)
1020
- @title = args[:title] if args.key?(:title)
419
+ @end_time = args[:end_time] if args.key?(:end_time)
420
+ @start_time = args[:start_time] if args.key?(:start_time)
1021
421
  end
1022
422
  end
1023
423
 
1024
- #
1025
- class ExternalId
424
+ # Metadata describing an Operation.
425
+ class OperationMetadata
1026
426
  include Google::Apis::Core::Hashable
1027
427
 
1028
- # The id used by the source of this data.
1029
- # Corresponds to the JSON property `id`
428
+ # This field is deprecated. Use `labels` instead. Optionally provided by the
429
+ # caller when submitting the request that creates the operation.
430
+ # Corresponds to the JSON property `clientId`
1030
431
  # @return [String]
1031
- attr_accessor :id
432
+ attr_accessor :client_id
1032
433
 
1033
- # The name of the source of this data.
1034
- # Corresponds to the JSON property `sourceName`
434
+ # The time at which the job was submitted to the Genomics service.
435
+ # Corresponds to the JSON property `createTime`
1035
436
  # @return [String]
1036
- attr_accessor :source_name
437
+ attr_accessor :create_time
1037
438
 
1038
- def initialize(**args)
1039
- update!(**args)
1040
- end
439
+ # The time at which the job stopped running.
440
+ # Corresponds to the JSON property `endTime`
441
+ # @return [String]
442
+ attr_accessor :end_time
1041
443
 
1042
- # Update properties of this object
1043
- def update!(**args)
1044
- @id = args[:id] if args.key?(:id)
1045
- @source_name = args[:source_name] if args.key?(:source_name)
1046
- end
1047
- end
444
+ # Optional event messages that were generated during the job's execution.
445
+ # This also contains any warnings that were generated during import
446
+ # or export.
447
+ # Corresponds to the JSON property `events`
448
+ # @return [Array<Google::Apis::GenomicsV1::OperationEvent>]
449
+ attr_accessor :events
1048
450
 
1049
- # An event generated when the execution of a pipeline has failed. Note
1050
- # that other events can continue to occur after this event.
1051
- class FailedEvent
1052
- include Google::Apis::Core::Hashable
451
+ # Optionally provided by the caller when submitting the request that creates
452
+ # the operation.
453
+ # Corresponds to the JSON property `labels`
454
+ # @return [Hash<String,String>]
455
+ attr_accessor :labels
1053
456
 
1054
- # The human-readable description of the cause of the failure.
1055
- # Corresponds to the JSON property `cause`
457
+ # The Google Cloud Project in which the job is scoped.
458
+ # Corresponds to the JSON property `projectId`
1056
459
  # @return [String]
1057
- attr_accessor :cause
460
+ attr_accessor :project_id
1058
461
 
1059
- # The Google standard error code that best describes this failure.
1060
- # Corresponds to the JSON property `code`
462
+ # The original request that started the operation. Note that this will be in
463
+ # current version of the API. If the operation was started with v1beta2 API
464
+ # and a GetOperation is performed on v1 API, a v1 request will be returned.
465
+ # Corresponds to the JSON property `request`
466
+ # @return [Hash<String,Object>]
467
+ attr_accessor :request
468
+
469
+ # Runtime metadata on this Operation.
470
+ # Corresponds to the JSON property `runtimeMetadata`
471
+ # @return [Hash<String,Object>]
472
+ attr_accessor :runtime_metadata
473
+
474
+ # The time at which the job began to run.
475
+ # Corresponds to the JSON property `startTime`
1061
476
  # @return [String]
1062
- attr_accessor :code
477
+ attr_accessor :start_time
1063
478
 
1064
479
  def initialize(**args)
1065
480
  update!(**args)
@@ -1067,60 +482,45 @@ module Google
1067
482
 
1068
483
  # Update properties of this object
1069
484
  def update!(**args)
1070
- @cause = args[:cause] if args.key?(:cause)
1071
- @code = args[:code] if args.key?(:code)
485
+ @client_id = args[:client_id] if args.key?(:client_id)
486
+ @create_time = args[:create_time] if args.key?(:create_time)
487
+ @end_time = args[:end_time] if args.key?(:end_time)
488
+ @events = args[:events] if args.key?(:events)
489
+ @labels = args[:labels] if args.key?(:labels)
490
+ @project_id = args[:project_id] if args.key?(:project_id)
491
+ @request = args[:request] if args.key?(:request)
492
+ @runtime_metadata = args[:runtime_metadata] if args.key?(:runtime_metadata)
493
+ @start_time = args[:start_time] if args.key?(:start_time)
1072
494
  end
1073
495
  end
1074
496
 
1075
- # Request message for `GetIamPolicy` method.
1076
- class GetIamPolicyRequest
497
+ # An event generated when the worker starts pulling an image.
498
+ class PullStartedEvent
1077
499
  include Google::Apis::Core::Hashable
1078
500
 
501
+ # The URI of the image that was pulled.
502
+ # Corresponds to the JSON property `imageUri`
503
+ # @return [String]
504
+ attr_accessor :image_uri
505
+
1079
506
  def initialize(**args)
1080
507
  update!(**args)
1081
508
  end
1082
509
 
1083
510
  # Update properties of this object
1084
511
  def update!(**args)
512
+ @image_uri = args[:image_uri] if args.key?(:image_uri)
1085
513
  end
1086
514
  end
1087
515
 
1088
- # The read group set import request.
1089
- class ImportReadGroupSetsRequest
516
+ # An event generated when the worker stops pulling an image.
517
+ class PullStoppedEvent
1090
518
  include Google::Apis::Core::Hashable
1091
519
 
1092
- # Required. The ID of the dataset these read group sets will belong to. The
1093
- # caller must have WRITE permissions to this dataset.
1094
- # Corresponds to the JSON property `datasetId`
1095
- # @return [String]
1096
- attr_accessor :dataset_id
1097
-
1098
- # The partition strategy describes how read groups are partitioned into read
1099
- # group sets.
1100
- # Corresponds to the JSON property `partitionStrategy`
1101
- # @return [String]
1102
- attr_accessor :partition_strategy
1103
-
1104
- # The reference set to which the imported read group sets are aligned to, if
1105
- # any. The reference names of this reference set must be a superset of those
1106
- # found in the imported file headers. If no reference set id is provided, a
1107
- # best effort is made to associate with a matching reference set.
1108
- # Corresponds to the JSON property `referenceSetId`
520
+ # The URI of the image that was pulled.
521
+ # Corresponds to the JSON property `imageUri`
1109
522
  # @return [String]
1110
- attr_accessor :reference_set_id
1111
-
1112
- # A list of URIs pointing at [BAM
1113
- # files](https://samtools.github.io/hts-specs/SAMv1.pdf)
1114
- # in Google Cloud Storage.
1115
- # Those URIs can include wildcards (*), but do not add or remove
1116
- # matching files before import has completed.
1117
- # Note that Google Cloud Storage object listing is only eventually
1118
- # consistent: files added may be not be immediately visible to
1119
- # everyone. Thus, if using a wildcard it is preferable not to start
1120
- # the import immediately after the files are created.
1121
- # Corresponds to the JSON property `sourceUris`
1122
- # @return [Array<String>]
1123
- attr_accessor :source_uris
523
+ attr_accessor :image_uri
1124
524
 
1125
525
  def initialize(**args)
1126
526
  update!(**args)
@@ -1128,74 +528,35 @@ module Google
1128
528
 
1129
529
  # Update properties of this object
1130
530
  def update!(**args)
1131
- @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
1132
- @partition_strategy = args[:partition_strategy] if args.key?(:partition_strategy)
1133
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
1134
- @source_uris = args[:source_uris] if args.key?(:source_uris)
531
+ @image_uri = args[:image_uri] if args.key?(:image_uri)
1135
532
  end
1136
533
  end
1137
534
 
1138
- # The read group set import response.
1139
- class ImportReadGroupSetsResponse
535
+ # The response to the RunPipeline method, returned in the operation's result
536
+ # field on success.
537
+ class RunPipelineResponse
1140
538
  include Google::Apis::Core::Hashable
1141
539
 
1142
- # IDs of the read group sets that were created.
1143
- # Corresponds to the JSON property `readGroupSetIds`
1144
- # @return [Array<String>]
1145
- attr_accessor :read_group_set_ids
1146
-
1147
540
  def initialize(**args)
1148
541
  update!(**args)
1149
542
  end
1150
543
 
1151
544
  # Update properties of this object
1152
545
  def update!(**args)
1153
- @read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
1154
546
  end
1155
547
  end
1156
548
 
1157
- # The variant data import request.
1158
- class ImportVariantsRequest
549
+ # Runtime metadata that will be populated in the
550
+ # runtimeMetadata
551
+ # field of the Operation associated with a RunPipeline execution.
552
+ class RuntimeMetadata
1159
553
  include Google::Apis::Core::Hashable
1160
554
 
1161
- # The format of the variant data being imported. If unspecified, defaults to
1162
- # to `VCF`.
1163
- # Corresponds to the JSON property `format`
1164
- # @return [String]
1165
- attr_accessor :format
1166
-
1167
- # A mapping between info field keys and the InfoMergeOperations to
1168
- # be performed on them. This is plumbed down to the MergeVariantRequests
1169
- # generated by the resulting import job.
1170
- # Corresponds to the JSON property `infoMergeConfig`
1171
- # @return [Hash<String,String>]
1172
- attr_accessor :info_merge_config
1173
-
1174
- # Convert reference names to the canonical representation.
1175
- # hg19 haploytypes (those reference names containing "_hap")
1176
- # are not modified in any way.
1177
- # All other reference names are modified according to the following rules:
1178
- # The reference name is capitalized.
1179
- # The "chr" prefix is dropped for all autosomes and sex chromsomes.
1180
- # For example "chr17" becomes "17" and "chrX" becomes "X".
1181
- # All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
1182
- # Corresponds to the JSON property `normalizeReferenceNames`
1183
- # @return [Boolean]
1184
- attr_accessor :normalize_reference_names
1185
- alias_method :normalize_reference_names?, :normalize_reference_names
1186
-
1187
- # A list of URIs referencing variant files in Google Cloud Storage. URIs can
1188
- # include wildcards [as described
1189
- # here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
1190
- # Note that recursive wildcards ('**') are not supported.
1191
- # Corresponds to the JSON property `sourceUris`
1192
- # @return [Array<String>]
1193
- attr_accessor :source_uris
1194
-
1195
- # Required. The variant set to which variant data should be imported.
1196
- # Corresponds to the JSON property `variantSetId`
1197
- # @return [String]
1198
- attr_accessor :variant_set_id
555
+ # Describes a Compute Engine resource that is being managed by a running
556
+ # pipeline.
557
+ # Corresponds to the JSON property `computeEngine`
558
+ # @return [Google::Apis::GenomicsV1::ComputeEngine]
559
+ attr_accessor :compute_engine
1199
560
 
1200
561
  def initialize(**args)
1201
562
  update!(**args)
@@ -1203,2024 +564,18 @@ module Google
1203
564
 
1204
565
  # Update properties of this object
1205
566
  def update!(**args)
1206
- @format = args[:format] if args.key?(:format)
1207
- @info_merge_config = args[:info_merge_config] if args.key?(:info_merge_config)
1208
- @normalize_reference_names = args[:normalize_reference_names] if args.key?(:normalize_reference_names)
1209
- @source_uris = args[:source_uris] if args.key?(:source_uris)
1210
- @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
1211
- end
1212
- end
1213
-
1214
- # The variant data import response.
1215
- class ImportVariantsResponse
1216
- include Google::Apis::Core::Hashable
1217
-
1218
- # IDs of the call sets created during the import.
1219
- # Corresponds to the JSON property `callSetIds`
1220
- # @return [Array<String>]
1221
- attr_accessor :call_set_ids
1222
-
1223
- def initialize(**args)
1224
- update!(**args)
1225
- end
1226
-
1227
- # Update properties of this object
1228
- def update!(**args)
1229
- @call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
1230
- end
1231
- end
1232
-
1233
- # A linear alignment can be represented by one CIGAR string. Describes the
1234
- # mapped position and local alignment of the read to the reference.
1235
- class LinearAlignment
1236
- include Google::Apis::Core::Hashable
1237
-
1238
- # Represents the local alignment of this sequence (alignment matches, indels,
1239
- # etc) against the reference.
1240
- # Corresponds to the JSON property `cigar`
1241
- # @return [Array<Google::Apis::GenomicsV1::CigarUnit>]
1242
- attr_accessor :cigar
1243
-
1244
- # The mapping quality of this alignment. Represents how likely
1245
- # the read maps to this position as opposed to other locations.
1246
- # Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
1247
- # the nearest integer.
1248
- # Corresponds to the JSON property `mappingQuality`
1249
- # @return [Fixnum]
1250
- attr_accessor :mapping_quality
1251
-
1252
- # An abstraction for referring to a genomic position, in relation to some
1253
- # already known reference. For now, represents a genomic position as a
1254
- # reference name, a base number on that reference (0-based), and a
1255
- # determination of forward or reverse strand.
1256
- # Corresponds to the JSON property `position`
1257
- # @return [Google::Apis::GenomicsV1::Position]
1258
- attr_accessor :position
1259
-
1260
- def initialize(**args)
1261
- update!(**args)
1262
- end
1263
-
1264
- # Update properties of this object
1265
- def update!(**args)
1266
- @cigar = args[:cigar] if args.key?(:cigar)
1267
- @mapping_quality = args[:mapping_quality] if args.key?(:mapping_quality)
1268
- @position = args[:position] if args.key?(:position)
1269
- end
1270
- end
1271
-
1272
- #
1273
- class ListBasesResponse
1274
- include Google::Apis::Core::Hashable
1275
-
1276
- # The continuation token, which is used to page through large result sets.
1277
- # Provide this value in a subsequent request to return the next page of
1278
- # results. This field will be empty if there aren't any additional results.
1279
- # Corresponds to the JSON property `nextPageToken`
1280
- # @return [String]
1281
- attr_accessor :next_page_token
1282
-
1283
- # The offset position (0-based) of the given `sequence` from the
1284
- # start of this `Reference`. This value will differ for each page
1285
- # in a paginated request.
1286
- # Corresponds to the JSON property `offset`
1287
- # @return [Fixnum]
1288
- attr_accessor :offset
1289
-
1290
- # A substring of the bases that make up this reference.
1291
- # Corresponds to the JSON property `sequence`
1292
- # @return [String]
1293
- attr_accessor :sequence
1294
-
1295
- def initialize(**args)
1296
- update!(**args)
1297
- end
1298
-
1299
- # Update properties of this object
1300
- def update!(**args)
1301
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1302
- @offset = args[:offset] if args.key?(:offset)
1303
- @sequence = args[:sequence] if args.key?(:sequence)
1304
- end
1305
- end
1306
-
1307
- #
1308
- class ListCoverageBucketsResponse
1309
- include Google::Apis::Core::Hashable
1310
-
1311
- # The length of each coverage bucket in base pairs. Note that buckets at the
1312
- # end of a reference sequence may be shorter. This value is omitted if the
1313
- # bucket width is infinity (the default behaviour, with no range or
1314
- # `targetBucketWidth`).
1315
- # Corresponds to the JSON property `bucketWidth`
1316
- # @return [Fixnum]
1317
- attr_accessor :bucket_width
1318
-
1319
- # The coverage buckets. The list of buckets is sparse; a bucket with 0
1320
- # overlapping reads is not returned. A bucket never crosses more than one
1321
- # reference sequence. Each bucket has width `bucketWidth`, unless
1322
- # its end is the end of the reference sequence.
1323
- # Corresponds to the JSON property `coverageBuckets`
1324
- # @return [Array<Google::Apis::GenomicsV1::CoverageBucket>]
1325
- attr_accessor :coverage_buckets
1326
-
1327
- # The continuation token, which is used to page through large result sets.
1328
- # Provide this value in a subsequent request to return the next page of
1329
- # results. This field will be empty if there aren't any additional results.
1330
- # Corresponds to the JSON property `nextPageToken`
1331
- # @return [String]
1332
- attr_accessor :next_page_token
1333
-
1334
- def initialize(**args)
1335
- update!(**args)
1336
- end
1337
-
1338
- # Update properties of this object
1339
- def update!(**args)
1340
- @bucket_width = args[:bucket_width] if args.key?(:bucket_width)
1341
- @coverage_buckets = args[:coverage_buckets] if args.key?(:coverage_buckets)
1342
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1343
- end
1344
- end
1345
-
1346
- # The dataset list response.
1347
- class ListDatasetsResponse
1348
- include Google::Apis::Core::Hashable
1349
-
1350
- # The list of matching Datasets.
1351
- # Corresponds to the JSON property `datasets`
1352
- # @return [Array<Google::Apis::GenomicsV1::Dataset>]
1353
- attr_accessor :datasets
1354
-
1355
- # The continuation token, which is used to page through large result sets.
1356
- # Provide this value in a subsequent request to return the next page of
1357
- # results. This field will be empty if there aren't any additional results.
1358
- # Corresponds to the JSON property `nextPageToken`
1359
- # @return [String]
1360
- attr_accessor :next_page_token
1361
-
1362
- def initialize(**args)
1363
- update!(**args)
1364
- end
1365
-
1366
- # Update properties of this object
1367
- def update!(**args)
1368
- @datasets = args[:datasets] if args.key?(:datasets)
1369
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1370
- end
1371
- end
1372
-
1373
- # The response message for Operations.ListOperations.
1374
- class ListOperationsResponse
1375
- include Google::Apis::Core::Hashable
1376
-
1377
- # The standard List next-page token.
1378
- # Corresponds to the JSON property `nextPageToken`
1379
- # @return [String]
1380
- attr_accessor :next_page_token
1381
-
1382
- # A list of operations that matches the specified filter in the request.
1383
- # Corresponds to the JSON property `operations`
1384
- # @return [Array<Google::Apis::GenomicsV1::Operation>]
1385
- attr_accessor :operations
1386
-
1387
- def initialize(**args)
1388
- update!(**args)
1389
- end
1390
-
1391
- # Update properties of this object
1392
- def update!(**args)
1393
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1394
- @operations = args[:operations] if args.key?(:operations)
1395
- end
1396
- end
1397
-
1398
- #
1399
- class MergeVariantsRequest
1400
- include Google::Apis::Core::Hashable
1401
-
1402
- # A mapping between info field keys and the InfoMergeOperations to
1403
- # be performed on them.
1404
- # Corresponds to the JSON property `infoMergeConfig`
1405
- # @return [Hash<String,String>]
1406
- attr_accessor :info_merge_config
1407
-
1408
- # The destination variant set.
1409
- # Corresponds to the JSON property `variantSetId`
1410
- # @return [String]
1411
- attr_accessor :variant_set_id
1412
-
1413
- # The variants to be merged with existing variants.
1414
- # Corresponds to the JSON property `variants`
1415
- # @return [Array<Google::Apis::GenomicsV1::Variant>]
1416
- attr_accessor :variants
1417
-
1418
- def initialize(**args)
1419
- update!(**args)
1420
- end
1421
-
1422
- # Update properties of this object
1423
- def update!(**args)
1424
- @info_merge_config = args[:info_merge_config] if args.key?(:info_merge_config)
1425
- @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
1426
- @variants = args[:variants] if args.key?(:variants)
1427
- end
1428
- end
1429
-
1430
- # This resource represents a long-running operation that is the result of a
1431
- # network API call.
1432
- class Operation
1433
- include Google::Apis::Core::Hashable
1434
-
1435
- # If the value is `false`, it means the operation is still in progress.
1436
- # If `true`, the operation is completed, and either `error` or `response` is
1437
- # available.
1438
- # Corresponds to the JSON property `done`
1439
- # @return [Boolean]
1440
- attr_accessor :done
1441
- alias_method :done?, :done
1442
-
1443
- # The `Status` type defines a logical error model that is suitable for different
1444
- # programming environments, including REST APIs and RPC APIs. It is used by
1445
- # [gRPC](https://github.com/grpc). The error model is designed to be:
1446
- # - Simple to use and understand for most users
1447
- # - Flexible enough to meet unexpected needs
1448
- # # Overview
1449
- # The `Status` message contains three pieces of data: error code, error message,
1450
- # and error details. The error code should be an enum value of
1451
- # google.rpc.Code, but it may accept additional error codes if needed. The
1452
- # error message should be a developer-facing English message that helps
1453
- # developers *understand* and *resolve* the error. If a localized user-facing
1454
- # error message is needed, put the localized message in the error details or
1455
- # localize it in the client. The optional error details may contain arbitrary
1456
- # information about the error. There is a predefined set of error detail types
1457
- # in the package `google.rpc` that can be used for common error conditions.
1458
- # # Language mapping
1459
- # The `Status` message is the logical representation of the error model, but it
1460
- # is not necessarily the actual wire format. When the `Status` message is
1461
- # exposed in different client libraries and different wire protocols, it can be
1462
- # mapped differently. For example, it will likely be mapped to some exceptions
1463
- # in Java, but more likely mapped to some error codes in C.
1464
- # # Other uses
1465
- # The error model and the `Status` message can be used in a variety of
1466
- # environments, either with or without APIs, to provide a
1467
- # consistent developer experience across different environments.
1468
- # Example uses of this error model include:
1469
- # - Partial errors. If a service needs to return partial errors to the client,
1470
- # it may embed the `Status` in the normal response to indicate the partial
1471
- # errors.
1472
- # - Workflow errors. A typical workflow has multiple steps. Each step may
1473
- # have a `Status` message for error reporting.
1474
- # - Batch operations. If a client uses batch request and batch response, the
1475
- # `Status` message should be used directly inside batch response, one for
1476
- # each error sub-response.
1477
- # - Asynchronous operations. If an API call embeds asynchronous operation
1478
- # results in its response, the status of those operations should be
1479
- # represented directly using the `Status` message.
1480
- # - Logging. If some API errors are stored in logs, the message `Status` could
1481
- # be used directly after any stripping needed for security/privacy reasons.
1482
- # Corresponds to the JSON property `error`
1483
- # @return [Google::Apis::GenomicsV1::Status]
1484
- attr_accessor :error
1485
-
1486
- # An OperationMetadata or Metadata object. This will always be returned with the
1487
- # Operation.
1488
- # Corresponds to the JSON property `metadata`
1489
- # @return [Hash<String,Object>]
1490
- attr_accessor :metadata
1491
-
1492
- # The server-assigned name, which is only unique within the same service that
1493
- # originally returns it. For example&#58; `operations/CJHU7Oi_ChDrveSpBRjfuL-
1494
- # qzoWAgEw`
1495
- # Corresponds to the JSON property `name`
1496
- # @return [String]
1497
- attr_accessor :name
1498
-
1499
- # If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If
1500
- # importing Variants, an ImportVariantsResponse is returned. For pipelines and
1501
- # exports, an Empty response is returned.
1502
- # Corresponds to the JSON property `response`
1503
- # @return [Hash<String,Object>]
1504
- attr_accessor :response
1505
-
1506
- def initialize(**args)
1507
- update!(**args)
1508
- end
1509
-
1510
- # Update properties of this object
1511
- def update!(**args)
1512
- @done = args[:done] if args.key?(:done)
1513
- @error = args[:error] if args.key?(:error)
1514
- @metadata = args[:metadata] if args.key?(:metadata)
1515
- @name = args[:name] if args.key?(:name)
1516
- @response = args[:response] if args.key?(:response)
1517
- end
1518
- end
1519
-
1520
- # An event that occurred during an Operation.
1521
- class OperationEvent
1522
- include Google::Apis::Core::Hashable
1523
-
1524
- # Required description of event.
1525
- # Corresponds to the JSON property `description`
1526
- # @return [String]
1527
- attr_accessor :description
1528
-
1529
- # Optional time of when event finished. An event can have a start time and no
1530
- # finish time. If an event has a finish time, there must be a start time.
1531
- # Corresponds to the JSON property `endTime`
1532
- # @return [String]
1533
- attr_accessor :end_time
1534
-
1535
- # Optional time of when event started.
1536
- # Corresponds to the JSON property `startTime`
1537
- # @return [String]
1538
- attr_accessor :start_time
1539
-
1540
- def initialize(**args)
1541
- update!(**args)
1542
- end
1543
-
1544
- # Update properties of this object
1545
- def update!(**args)
1546
- @description = args[:description] if args.key?(:description)
1547
- @end_time = args[:end_time] if args.key?(:end_time)
1548
- @start_time = args[:start_time] if args.key?(:start_time)
1549
- end
1550
- end
1551
-
1552
- # Metadata describing an Operation.
1553
- class OperationMetadata
1554
- include Google::Apis::Core::Hashable
1555
-
1556
- # This field is deprecated. Use `labels` instead. Optionally provided by the
1557
- # caller when submitting the request that creates the operation.
1558
- # Corresponds to the JSON property `clientId`
1559
- # @return [String]
1560
- attr_accessor :client_id
1561
-
1562
- # The time at which the job was submitted to the Genomics service.
1563
- # Corresponds to the JSON property `createTime`
1564
- # @return [String]
1565
- attr_accessor :create_time
1566
-
1567
- # The time at which the job stopped running.
1568
- # Corresponds to the JSON property `endTime`
1569
- # @return [String]
1570
- attr_accessor :end_time
1571
-
1572
- # Optional event messages that were generated during the job's execution.
1573
- # This also contains any warnings that were generated during import
1574
- # or export.
1575
- # Corresponds to the JSON property `events`
1576
- # @return [Array<Google::Apis::GenomicsV1::OperationEvent>]
1577
- attr_accessor :events
1578
-
1579
- # Optionally provided by the caller when submitting the request that creates
1580
- # the operation.
1581
- # Corresponds to the JSON property `labels`
1582
- # @return [Hash<String,String>]
1583
- attr_accessor :labels
1584
-
1585
- # The Google Cloud Project in which the job is scoped.
1586
- # Corresponds to the JSON property `projectId`
1587
- # @return [String]
1588
- attr_accessor :project_id
1589
-
1590
- # The original request that started the operation. Note that this will be in
1591
- # current version of the API. If the operation was started with v1beta2 API
1592
- # and a GetOperation is performed on v1 API, a v1 request will be returned.
1593
- # Corresponds to the JSON property `request`
1594
- # @return [Hash<String,Object>]
1595
- attr_accessor :request
1596
-
1597
- # Runtime metadata on this Operation.
1598
- # Corresponds to the JSON property `runtimeMetadata`
1599
- # @return [Hash<String,Object>]
1600
- attr_accessor :runtime_metadata
1601
-
1602
- # The time at which the job began to run.
1603
- # Corresponds to the JSON property `startTime`
1604
- # @return [String]
1605
- attr_accessor :start_time
1606
-
1607
- def initialize(**args)
1608
- update!(**args)
1609
- end
1610
-
1611
- # Update properties of this object
1612
- def update!(**args)
1613
- @client_id = args[:client_id] if args.key?(:client_id)
1614
- @create_time = args[:create_time] if args.key?(:create_time)
1615
- @end_time = args[:end_time] if args.key?(:end_time)
1616
- @events = args[:events] if args.key?(:events)
1617
- @labels = args[:labels] if args.key?(:labels)
1618
- @project_id = args[:project_id] if args.key?(:project_id)
1619
- @request = args[:request] if args.key?(:request)
1620
- @runtime_metadata = args[:runtime_metadata] if args.key?(:runtime_metadata)
1621
- @start_time = args[:start_time] if args.key?(:start_time)
1622
- end
1623
- end
1624
-
1625
- # Defines an Identity and Access Management (IAM) policy. It is used to
1626
- # specify access control policies for Cloud Platform resources.
1627
- # A `Policy` consists of a list of `bindings`. A `binding` binds a list of
1628
- # `members` to a `role`, where the members can be user accounts, Google groups,
1629
- # Google domains, and service accounts. A `role` is a named list of permissions
1630
- # defined by IAM.
1631
- # **JSON Example**
1632
- # `
1633
- # "bindings": [
1634
- # `
1635
- # "role": "roles/owner",
1636
- # "members": [
1637
- # "user:mike@example.com",
1638
- # "group:admins@example.com",
1639
- # "domain:google.com",
1640
- # "serviceAccount:my-other-app@appspot.gserviceaccount.com"
1641
- # ]
1642
- # `,
1643
- # `
1644
- # "role": "roles/viewer",
1645
- # "members": ["user:sean@example.com"]
1646
- # `
1647
- # ]
1648
- # `
1649
- # **YAML Example**
1650
- # bindings:
1651
- # - members:
1652
- # - user:mike@example.com
1653
- # - group:admins@example.com
1654
- # - domain:google.com
1655
- # - serviceAccount:my-other-app@appspot.gserviceaccount.com
1656
- # role: roles/owner
1657
- # - members:
1658
- # - user:sean@example.com
1659
- # role: roles/viewer
1660
- # For a description of IAM and its features, see the
1661
- # [IAM developer's guide](https://cloud.google.com/iam/docs).
1662
- class Policy
1663
- include Google::Apis::Core::Hashable
1664
-
1665
- # Associates a list of `members` to a `role`.
1666
- # `bindings` with no members will result in an error.
1667
- # Corresponds to the JSON property `bindings`
1668
- # @return [Array<Google::Apis::GenomicsV1::Binding>]
1669
- attr_accessor :bindings
1670
-
1671
- # `etag` is used for optimistic concurrency control as a way to help
1672
- # prevent simultaneous updates of a policy from overwriting each other.
1673
- # It is strongly suggested that systems make use of the `etag` in the
1674
- # read-modify-write cycle to perform policy updates in order to avoid race
1675
- # conditions: An `etag` is returned in the response to `getIamPolicy`, and
1676
- # systems are expected to put that etag in the request to `setIamPolicy` to
1677
- # ensure that their change will be applied to the same version of the policy.
1678
- # If no `etag` is provided in the call to `setIamPolicy`, then the existing
1679
- # policy is overwritten blindly.
1680
- # Corresponds to the JSON property `etag`
1681
- # NOTE: Values are automatically base64 encoded/decoded in the client library.
1682
- # @return [String]
1683
- attr_accessor :etag
1684
-
1685
- # Deprecated.
1686
- # Corresponds to the JSON property `version`
1687
- # @return [Fixnum]
1688
- attr_accessor :version
1689
-
1690
- def initialize(**args)
1691
- update!(**args)
1692
- end
1693
-
1694
- # Update properties of this object
1695
- def update!(**args)
1696
- @bindings = args[:bindings] if args.key?(:bindings)
1697
- @etag = args[:etag] if args.key?(:etag)
1698
- @version = args[:version] if args.key?(:version)
1699
- end
1700
- end
1701
-
1702
- # An abstraction for referring to a genomic position, in relation to some
1703
- # already known reference. For now, represents a genomic position as a
1704
- # reference name, a base number on that reference (0-based), and a
1705
- # determination of forward or reverse strand.
1706
- class Position
1707
- include Google::Apis::Core::Hashable
1708
-
1709
- # The 0-based offset from the start of the forward strand for that reference.
1710
- # Corresponds to the JSON property `position`
1711
- # @return [Fixnum]
1712
- attr_accessor :position
1713
-
1714
- # The name of the reference in whatever reference set is being used.
1715
- # Corresponds to the JSON property `referenceName`
1716
- # @return [String]
1717
- attr_accessor :reference_name
1718
-
1719
- # Whether this position is on the reverse strand, as opposed to the forward
1720
- # strand.
1721
- # Corresponds to the JSON property `reverseStrand`
1722
- # @return [Boolean]
1723
- attr_accessor :reverse_strand
1724
- alias_method :reverse_strand?, :reverse_strand
1725
-
1726
- def initialize(**args)
1727
- update!(**args)
1728
- end
1729
-
1730
- # Update properties of this object
1731
- def update!(**args)
1732
- @position = args[:position] if args.key?(:position)
1733
- @reference_name = args[:reference_name] if args.key?(:reference_name)
1734
- @reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
1735
- end
1736
- end
1737
-
1738
- #
1739
- class Program
1740
- include Google::Apis::Core::Hashable
1741
-
1742
- # The command line used to run this program.
1743
- # Corresponds to the JSON property `commandLine`
1744
- # @return [String]
1745
- attr_accessor :command_line
1746
-
1747
- # The user specified locally unique ID of the program. Used along with
1748
- # `prevProgramId` to define an ordering between programs.
1749
- # Corresponds to the JSON property `id`
1750
- # @return [String]
1751
- attr_accessor :id
1752
-
1753
- # The display name of the program. This is typically the colloquial name of
1754
- # the tool used, for example 'bwa' or 'picard'.
1755
- # Corresponds to the JSON property `name`
1756
- # @return [String]
1757
- attr_accessor :name
1758
-
1759
- # The ID of the program run before this one.
1760
- # Corresponds to the JSON property `prevProgramId`
1761
- # @return [String]
1762
- attr_accessor :prev_program_id
1763
-
1764
- # The version of the program run.
1765
- # Corresponds to the JSON property `version`
1766
- # @return [String]
1767
- attr_accessor :version
1768
-
1769
- def initialize(**args)
1770
- update!(**args)
1771
- end
1772
-
1773
- # Update properties of this object
1774
- def update!(**args)
1775
- @command_line = args[:command_line] if args.key?(:command_line)
1776
- @id = args[:id] if args.key?(:id)
1777
- @name = args[:name] if args.key?(:name)
1778
- @prev_program_id = args[:prev_program_id] if args.key?(:prev_program_id)
1779
- @version = args[:version] if args.key?(:version)
1780
- end
1781
- end
1782
-
1783
- # An event generated when the worker starts pulling an image.
1784
- class PullStartedEvent
1785
- include Google::Apis::Core::Hashable
1786
-
1787
- # The URI of the image that was pulled.
1788
- # Corresponds to the JSON property `imageUri`
1789
- # @return [String]
1790
- attr_accessor :image_uri
1791
-
1792
- def initialize(**args)
1793
- update!(**args)
1794
- end
1795
-
1796
- # Update properties of this object
1797
- def update!(**args)
1798
- @image_uri = args[:image_uri] if args.key?(:image_uri)
1799
- end
1800
- end
1801
-
1802
- # An event generated when the worker stops pulling an image.
1803
- class PullStoppedEvent
1804
- include Google::Apis::Core::Hashable
1805
-
1806
- # The URI of the image that was pulled.
1807
- # Corresponds to the JSON property `imageUri`
1808
- # @return [String]
1809
- attr_accessor :image_uri
1810
-
1811
- def initialize(**args)
1812
- update!(**args)
1813
- end
1814
-
1815
- # Update properties of this object
1816
- def update!(**args)
1817
- @image_uri = args[:image_uri] if args.key?(:image_uri)
1818
- end
1819
- end
1820
-
1821
- # A 0-based half-open genomic coordinate range for search requests.
1822
- class Range
1823
- include Google::Apis::Core::Hashable
1824
-
1825
- # The end position of the range on the reference, 0-based exclusive.
1826
- # Corresponds to the JSON property `end`
1827
- # @return [Fixnum]
1828
- attr_accessor :end
1829
-
1830
- # The reference sequence name, for example `chr1`,
1831
- # `1`, or `chrX`.
1832
- # Corresponds to the JSON property `referenceName`
1833
- # @return [String]
1834
- attr_accessor :reference_name
1835
-
1836
- # The start position of the range on the reference, 0-based inclusive.
1837
- # Corresponds to the JSON property `start`
1838
- # @return [Fixnum]
1839
- attr_accessor :start
1840
-
1841
- def initialize(**args)
1842
- update!(**args)
1843
- end
1844
-
1845
- # Update properties of this object
1846
- def update!(**args)
1847
- @end = args[:end] if args.key?(:end)
1848
- @reference_name = args[:reference_name] if args.key?(:reference_name)
1849
- @start = args[:start] if args.key?(:start)
1850
- end
1851
- end
1852
-
1853
- # A read alignment describes a linear alignment of a string of DNA to a
1854
- # reference sequence, in addition to metadata
1855
- # about the fragment (the molecule of DNA sequenced) and the read (the bases
1856
- # which were read by the sequencer). A read is equivalent to a line in a SAM
1857
- # file. A read belongs to exactly one read group and exactly one
1858
- # read group set.
1859
- # ### Reverse-stranded reads
1860
- # Mapped reads (reads having a non-null `alignment`) can be aligned to either
1861
- # the forward or the reverse strand of their associated reference. Strandedness
1862
- # of a mapped read is encoded by `alignment.position.reverseStrand`.
1863
- # If we consider the reference to be a forward-stranded coordinate space of
1864
- # `[0, reference.length)` with `0` as the left-most position and
1865
- # `reference.length` as the right-most position, reads are always aligned left
1866
- # to right. That is, `alignment.position.position` always refers to the
1867
- # left-most reference coordinate and `alignment.cigar` describes the alignment
1868
- # of this read to the reference from left to right. All per-base fields such as
1869
- # `alignedSequence` and `alignedQuality` share this same left-to-right
1870
- # orientation; this is true of reads which are aligned to either strand. For
1871
- # reverse-stranded reads, this means that `alignedSequence` is the reverse
1872
- # complement of the bases that were originally reported by the sequencing
1873
- # machine.
1874
- # ### Generating a reference-aligned sequence string
1875
- # When interacting with mapped reads, it's often useful to produce a string
1876
- # representing the local alignment of the read to reference. The following
1877
- # pseudocode demonstrates one way of doing this:
1878
- # out = ""
1879
- # offset = 0
1880
- # for c in read.alignment.cigar `
1881
- # switch c.operation `
1882
- # case "ALIGNMENT_MATCH", "SEQUENCE_MATCH", "SEQUENCE_MISMATCH":
1883
- # out += read.alignedSequence[offset:offset+c.operationLength]
1884
- # offset += c.operationLength
1885
- # break
1886
- # case "CLIP_SOFT", "INSERT":
1887
- # offset += c.operationLength
1888
- # break
1889
- # case "PAD":
1890
- # out += repeat("*", c.operationLength)
1891
- # break
1892
- # case "DELETE":
1893
- # out += repeat("-", c.operationLength)
1894
- # break
1895
- # case "SKIP":
1896
- # out += repeat(" ", c.operationLength)
1897
- # break
1898
- # case "CLIP_HARD":
1899
- # break
1900
- # `
1901
- # `
1902
- # return out
1903
- # ### Converting to SAM's CIGAR string
1904
- # The following pseudocode generates a SAM CIGAR string from the
1905
- # `cigar` field. Note that this is a lossy conversion
1906
- # (`cigar.referenceSequence` is lost).
1907
- # cigarMap = `
1908
- # "ALIGNMENT_MATCH": "M",
1909
- # "INSERT": "I",
1910
- # "DELETE": "D",
1911
- # "SKIP": "N",
1912
- # "CLIP_SOFT": "S",
1913
- # "CLIP_HARD": "H",
1914
- # "PAD": "P",
1915
- # "SEQUENCE_MATCH": "=",
1916
- # "SEQUENCE_MISMATCH": "X",
1917
- # `
1918
- # cigarStr = ""
1919
- # for c in read.alignment.cigar `
1920
- # cigarStr += c.operationLength + cigarMap[c.operation]
1921
- # `
1922
- # return cigarStr
1923
- class Read
1924
- include Google::Apis::Core::Hashable
1925
-
1926
- # The quality of the read sequence contained in this alignment record
1927
- # (equivalent to QUAL in SAM).
1928
- # `alignedSequence` and `alignedQuality` may be shorter than the full read
1929
- # sequence and quality. This will occur if the alignment is part of a
1930
- # chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR
1931
- # for this read will begin/end with a hard clip operator that will indicate
1932
- # the length of the excised sequence.
1933
- # Corresponds to the JSON property `alignedQuality`
1934
- # @return [Array<Fixnum>]
1935
- attr_accessor :aligned_quality
1936
-
1937
- # The bases of the read sequence contained in this alignment record,
1938
- # **without CIGAR operations applied** (equivalent to SEQ in SAM).
1939
- # `alignedSequence` and `alignedQuality` may be
1940
- # shorter than the full read sequence and quality. This will occur if the
1941
- # alignment is part of a chimeric alignment, or if the read was trimmed. When
1942
- # this occurs, the CIGAR for this read will begin/end with a hard clip
1943
- # operator that will indicate the length of the excised sequence.
1944
- # Corresponds to the JSON property `alignedSequence`
1945
- # @return [String]
1946
- attr_accessor :aligned_sequence
1947
-
1948
- # A linear alignment can be represented by one CIGAR string. Describes the
1949
- # mapped position and local alignment of the read to the reference.
1950
- # Corresponds to the JSON property `alignment`
1951
- # @return [Google::Apis::GenomicsV1::LinearAlignment]
1952
- attr_accessor :alignment
1953
-
1954
- # The fragment is a PCR or optical duplicate (SAM flag 0x400).
1955
- # Corresponds to the JSON property `duplicateFragment`
1956
- # @return [Boolean]
1957
- attr_accessor :duplicate_fragment
1958
- alias_method :duplicate_fragment?, :duplicate_fragment
1959
-
1960
- # Whether this read did not pass filters, such as platform or vendor quality
1961
- # controls (SAM flag 0x200).
1962
- # Corresponds to the JSON property `failedVendorQualityChecks`
1963
- # @return [Boolean]
1964
- attr_accessor :failed_vendor_quality_checks
1965
- alias_method :failed_vendor_quality_checks?, :failed_vendor_quality_checks
1966
-
1967
- # The observed length of the fragment, equivalent to TLEN in SAM.
1968
- # Corresponds to the JSON property `fragmentLength`
1969
- # @return [Fixnum]
1970
- attr_accessor :fragment_length
1971
-
1972
- # The fragment name. Equivalent to QNAME (query template name) in SAM.
1973
- # Corresponds to the JSON property `fragmentName`
1974
- # @return [String]
1975
- attr_accessor :fragment_name
1976
-
1977
- # The server-generated read ID, unique across all reads. This is different
1978
- # from the `fragmentName`.
1979
- # Corresponds to the JSON property `id`
1980
- # @return [String]
1981
- attr_accessor :id
1982
-
1983
- # A map of additional read alignment information. This must be of the form
1984
- # map<string, string[]> (string key mapping to a list of string values).
1985
- # Corresponds to the JSON property `info`
1986
- # @return [Hash<String,Array<Object>>]
1987
- attr_accessor :info
1988
-
1989
- # An abstraction for referring to a genomic position, in relation to some
1990
- # already known reference. For now, represents a genomic position as a
1991
- # reference name, a base number on that reference (0-based), and a
1992
- # determination of forward or reverse strand.
1993
- # Corresponds to the JSON property `nextMatePosition`
1994
- # @return [Google::Apis::GenomicsV1::Position]
1995
- attr_accessor :next_mate_position
1996
-
1997
- # The number of reads in the fragment (extension to SAM flag 0x1).
1998
- # Corresponds to the JSON property `numberReads`
1999
- # @return [Fixnum]
2000
- attr_accessor :number_reads
2001
-
2002
- # The orientation and the distance between reads from the fragment are
2003
- # consistent with the sequencing protocol (SAM flag 0x2).
2004
- # Corresponds to the JSON property `properPlacement`
2005
- # @return [Boolean]
2006
- attr_accessor :proper_placement
2007
- alias_method :proper_placement?, :proper_placement
2008
-
2009
- # The ID of the read group this read belongs to. A read belongs to exactly
2010
- # one read group. This is a server-generated ID which is distinct from SAM's
2011
- # RG tag (for that value, see
2012
- # ReadGroup.name).
2013
- # Corresponds to the JSON property `readGroupId`
2014
- # @return [String]
2015
- attr_accessor :read_group_id
2016
-
2017
- # The ID of the read group set this read belongs to. A read belongs to
2018
- # exactly one read group set.
2019
- # Corresponds to the JSON property `readGroupSetId`
2020
- # @return [String]
2021
- attr_accessor :read_group_set_id
2022
-
2023
- # The read number in sequencing. 0-based and less than numberReads. This
2024
- # field replaces SAM flag 0x40 and 0x80.
2025
- # Corresponds to the JSON property `readNumber`
2026
- # @return [Fixnum]
2027
- attr_accessor :read_number
2028
-
2029
- # Whether this alignment is secondary. Equivalent to SAM flag 0x100.
2030
- # A secondary alignment represents an alternative to the primary alignment
2031
- # for this read. Aligners may return secondary alignments if a read can map
2032
- # ambiguously to multiple coordinates in the genome. By convention, each read
2033
- # has one and only one alignment where both `secondaryAlignment`
2034
- # and `supplementaryAlignment` are false.
2035
- # Corresponds to the JSON property `secondaryAlignment`
2036
- # @return [Boolean]
2037
- attr_accessor :secondary_alignment
2038
- alias_method :secondary_alignment?, :secondary_alignment
2039
-
2040
- # Whether this alignment is supplementary. Equivalent to SAM flag 0x800.
2041
- # Supplementary alignments are used in the representation of a chimeric
2042
- # alignment. In a chimeric alignment, a read is split into multiple
2043
- # linear alignments that map to different reference contigs. The first
2044
- # linear alignment in the read will be designated as the representative
2045
- # alignment; the remaining linear alignments will be designated as
2046
- # supplementary alignments. These alignments may have different mapping
2047
- # quality scores. In each linear alignment in a chimeric alignment, the read
2048
- # will be hard clipped. The `alignedSequence` and
2049
- # `alignedQuality` fields in the alignment record will only
2050
- # represent the bases for its respective linear alignment.
2051
- # Corresponds to the JSON property `supplementaryAlignment`
2052
- # @return [Boolean]
2053
- attr_accessor :supplementary_alignment
2054
- alias_method :supplementary_alignment?, :supplementary_alignment
2055
-
2056
- def initialize(**args)
2057
- update!(**args)
2058
- end
2059
-
2060
- # Update properties of this object
2061
- def update!(**args)
2062
- @aligned_quality = args[:aligned_quality] if args.key?(:aligned_quality)
2063
- @aligned_sequence = args[:aligned_sequence] if args.key?(:aligned_sequence)
2064
- @alignment = args[:alignment] if args.key?(:alignment)
2065
- @duplicate_fragment = args[:duplicate_fragment] if args.key?(:duplicate_fragment)
2066
- @failed_vendor_quality_checks = args[:failed_vendor_quality_checks] if args.key?(:failed_vendor_quality_checks)
2067
- @fragment_length = args[:fragment_length] if args.key?(:fragment_length)
2068
- @fragment_name = args[:fragment_name] if args.key?(:fragment_name)
2069
- @id = args[:id] if args.key?(:id)
2070
- @info = args[:info] if args.key?(:info)
2071
- @next_mate_position = args[:next_mate_position] if args.key?(:next_mate_position)
2072
- @number_reads = args[:number_reads] if args.key?(:number_reads)
2073
- @proper_placement = args[:proper_placement] if args.key?(:proper_placement)
2074
- @read_group_id = args[:read_group_id] if args.key?(:read_group_id)
2075
- @read_group_set_id = args[:read_group_set_id] if args.key?(:read_group_set_id)
2076
- @read_number = args[:read_number] if args.key?(:read_number)
2077
- @secondary_alignment = args[:secondary_alignment] if args.key?(:secondary_alignment)
2078
- @supplementary_alignment = args[:supplementary_alignment] if args.key?(:supplementary_alignment)
2079
- end
2080
- end
2081
-
2082
- # A read group is all the data that's processed the same way by the sequencer.
2083
- class ReadGroup
2084
- include Google::Apis::Core::Hashable
2085
-
2086
- # The dataset to which this read group belongs.
2087
- # Corresponds to the JSON property `datasetId`
2088
- # @return [String]
2089
- attr_accessor :dataset_id
2090
-
2091
- # A free-form text description of this read group.
2092
- # Corresponds to the JSON property `description`
2093
- # @return [String]
2094
- attr_accessor :description
2095
-
2096
- # The experiment used to generate this read group.
2097
- # Corresponds to the JSON property `experiment`
2098
- # @return [Google::Apis::GenomicsV1::Experiment]
2099
- attr_accessor :experiment
2100
-
2101
- # The server-generated read group ID, unique for all read groups.
2102
- # Note: This is different than the @RG ID field in the SAM spec. For that
2103
- # value, see name.
2104
- # Corresponds to the JSON property `id`
2105
- # @return [String]
2106
- attr_accessor :id
2107
-
2108
- # A map of additional read group information. This must be of the form
2109
- # map<string, string[]> (string key mapping to a list of string values).
2110
- # Corresponds to the JSON property `info`
2111
- # @return [Hash<String,Array<Object>>]
2112
- attr_accessor :info
2113
-
2114
- # The read group name. This corresponds to the @RG ID field in the SAM spec.
2115
- # Corresponds to the JSON property `name`
2116
- # @return [String]
2117
- attr_accessor :name
2118
-
2119
- # The predicted insert size of this read group. The insert size is the length
2120
- # the sequenced DNA fragment from end-to-end, not including the adapters.
2121
- # Corresponds to the JSON property `predictedInsertSize`
2122
- # @return [Fixnum]
2123
- attr_accessor :predicted_insert_size
2124
-
2125
- # The programs used to generate this read group. Programs are always
2126
- # identical for all read groups within a read group set. For this reason,
2127
- # only the first read group in a returned set will have this field
2128
- # populated.
2129
- # Corresponds to the JSON property `programs`
2130
- # @return [Array<Google::Apis::GenomicsV1::Program>]
2131
- attr_accessor :programs
2132
-
2133
- # The reference set the reads in this read group are aligned to.
2134
- # Corresponds to the JSON property `referenceSetId`
2135
- # @return [String]
2136
- attr_accessor :reference_set_id
2137
-
2138
- # A client-supplied sample identifier for the reads in this read group.
2139
- # Corresponds to the JSON property `sampleId`
2140
- # @return [String]
2141
- attr_accessor :sample_id
2142
-
2143
- def initialize(**args)
2144
- update!(**args)
2145
- end
2146
-
2147
- # Update properties of this object
2148
- def update!(**args)
2149
- @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
2150
- @description = args[:description] if args.key?(:description)
2151
- @experiment = args[:experiment] if args.key?(:experiment)
2152
- @id = args[:id] if args.key?(:id)
2153
- @info = args[:info] if args.key?(:info)
2154
- @name = args[:name] if args.key?(:name)
2155
- @predicted_insert_size = args[:predicted_insert_size] if args.key?(:predicted_insert_size)
2156
- @programs = args[:programs] if args.key?(:programs)
2157
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
2158
- @sample_id = args[:sample_id] if args.key?(:sample_id)
2159
- end
2160
- end
2161
-
2162
- # A read group set is a logical collection of read groups, which are
2163
- # collections of reads produced by a sequencer. A read group set typically
2164
- # models reads corresponding to one sample, sequenced one way, and aligned one
2165
- # way.
2166
- # * A read group set belongs to one dataset.
2167
- # * A read group belongs to one read group set.
2168
- # * A read belongs to one read group.
2169
- class ReadGroupSet
2170
- include Google::Apis::Core::Hashable
2171
-
2172
- # The dataset to which this read group set belongs.
2173
- # Corresponds to the JSON property `datasetId`
2174
- # @return [String]
2175
- attr_accessor :dataset_id
2176
-
2177
- # The filename of the original source file for this read group set, if any.
2178
- # Corresponds to the JSON property `filename`
2179
- # @return [String]
2180
- attr_accessor :filename
2181
-
2182
- # The server-generated read group set ID, unique for all read group sets.
2183
- # Corresponds to the JSON property `id`
2184
- # @return [String]
2185
- attr_accessor :id
2186
-
2187
- # A map of additional read group set information.
2188
- # Corresponds to the JSON property `info`
2189
- # @return [Hash<String,Array<Object>>]
2190
- attr_accessor :info
2191
-
2192
- # The read group set name. By default this will be initialized to the sample
2193
- # name of the sequenced data contained in this set.
2194
- # Corresponds to the JSON property `name`
2195
- # @return [String]
2196
- attr_accessor :name
2197
-
2198
- # The read groups in this set. There are typically 1-10 read groups in a read
2199
- # group set.
2200
- # Corresponds to the JSON property `readGroups`
2201
- # @return [Array<Google::Apis::GenomicsV1::ReadGroup>]
2202
- attr_accessor :read_groups
2203
-
2204
- # The reference set to which the reads in this read group set are aligned.
2205
- # Corresponds to the JSON property `referenceSetId`
2206
- # @return [String]
2207
- attr_accessor :reference_set_id
2208
-
2209
- def initialize(**args)
2210
- update!(**args)
2211
- end
2212
-
2213
- # Update properties of this object
2214
- def update!(**args)
2215
- @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
2216
- @filename = args[:filename] if args.key?(:filename)
2217
- @id = args[:id] if args.key?(:id)
2218
- @info = args[:info] if args.key?(:info)
2219
- @name = args[:name] if args.key?(:name)
2220
- @read_groups = args[:read_groups] if args.key?(:read_groups)
2221
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
2222
- end
2223
- end
2224
-
2225
- # A reference is a canonical assembled DNA sequence, intended to act as a
2226
- # reference coordinate space for other genomic annotations. A single reference
2227
- # might represent the human chromosome 1 or mitochandrial DNA, for instance. A
2228
- # reference belongs to one or more reference sets.
2229
- class Reference
2230
- include Google::Apis::Core::Hashable
2231
-
2232
- # The server-generated reference ID, unique across all references.
2233
- # Corresponds to the JSON property `id`
2234
- # @return [String]
2235
- attr_accessor :id
2236
-
2237
- # The length of this reference's sequence.
2238
- # Corresponds to the JSON property `length`
2239
- # @return [Fixnum]
2240
- attr_accessor :length
2241
-
2242
- # MD5 of the upper-case sequence excluding all whitespace characters (this
2243
- # is equivalent to SQ:M5 in SAM). This value is represented in lower case
2244
- # hexadecimal format.
2245
- # Corresponds to the JSON property `md5checksum`
2246
- # @return [String]
2247
- attr_accessor :md5checksum
2248
-
2249
- # The name of this reference, for example `22`.
2250
- # Corresponds to the JSON property `name`
2251
- # @return [String]
2252
- attr_accessor :name
2253
-
2254
- # ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
2255
- # Corresponds to the JSON property `ncbiTaxonId`
2256
- # @return [Fixnum]
2257
- attr_accessor :ncbi_taxon_id
2258
-
2259
- # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
2260
- # with a version number, for example `GCF_000001405.26`.
2261
- # Corresponds to the JSON property `sourceAccessions`
2262
- # @return [Array<String>]
2263
- attr_accessor :source_accessions
2264
-
2265
- # The URI from which the sequence was obtained. Typically specifies a FASTA
2266
- # format file.
2267
- # Corresponds to the JSON property `sourceUri`
2268
- # @return [String]
2269
- attr_accessor :source_uri
2270
-
2271
- def initialize(**args)
2272
- update!(**args)
2273
- end
2274
-
2275
- # Update properties of this object
2276
- def update!(**args)
2277
- @id = args[:id] if args.key?(:id)
2278
- @length = args[:length] if args.key?(:length)
2279
- @md5checksum = args[:md5checksum] if args.key?(:md5checksum)
2280
- @name = args[:name] if args.key?(:name)
2281
- @ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
2282
- @source_accessions = args[:source_accessions] if args.key?(:source_accessions)
2283
- @source_uri = args[:source_uri] if args.key?(:source_uri)
2284
- end
2285
- end
2286
-
2287
- # ReferenceBound records an upper bound for the starting coordinate of
2288
- # variants in a particular reference.
2289
- class ReferenceBound
2290
- include Google::Apis::Core::Hashable
2291
-
2292
- # The name of the reference associated with this reference bound.
2293
- # Corresponds to the JSON property `referenceName`
2294
- # @return [String]
2295
- attr_accessor :reference_name
2296
-
2297
- # An upper bound (inclusive) on the starting coordinate of any
2298
- # variant in the reference sequence.
2299
- # Corresponds to the JSON property `upperBound`
2300
- # @return [Fixnum]
2301
- attr_accessor :upper_bound
2302
-
2303
- def initialize(**args)
2304
- update!(**args)
2305
- end
2306
-
2307
- # Update properties of this object
2308
- def update!(**args)
2309
- @reference_name = args[:reference_name] if args.key?(:reference_name)
2310
- @upper_bound = args[:upper_bound] if args.key?(:upper_bound)
2311
- end
2312
- end
2313
-
2314
- # A reference set is a set of references which typically comprise a reference
2315
- # assembly for a species, such as `GRCh38` which is representative
2316
- # of the human genome. A reference set defines a common coordinate space for
2317
- # comparing reference-aligned experimental data. A reference set contains 1 or
2318
- # more references.
2319
- class ReferenceSet
2320
- include Google::Apis::Core::Hashable
2321
-
2322
- # Public id of this reference set, such as `GRCh37`.
2323
- # Corresponds to the JSON property `assemblyId`
2324
- # @return [String]
2325
- attr_accessor :assembly_id
2326
-
2327
- # Free text description of this reference set.
2328
- # Corresponds to the JSON property `description`
2329
- # @return [String]
2330
- attr_accessor :description
2331
-
2332
- # The server-generated reference set ID, unique across all reference sets.
2333
- # Corresponds to the JSON property `id`
2334
- # @return [String]
2335
- attr_accessor :id
2336
-
2337
- # Order-independent MD5 checksum which identifies this reference set. The
2338
- # checksum is computed by sorting all lower case hexidecimal string
2339
- # `reference.md5checksum` (for all reference in this set) in
2340
- # ascending lexicographic order, concatenating, and taking the MD5 of that
2341
- # value. The resulting value is represented in lower case hexadecimal format.
2342
- # Corresponds to the JSON property `md5checksum`
2343
- # @return [String]
2344
- attr_accessor :md5checksum
2345
-
2346
- # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
2347
- # indicating the species which this reference set is intended to model. Note
2348
- # that contained references may specify a different `ncbiTaxonId`, as
2349
- # assemblies may contain reference sequences which do not belong to the
2350
- # modeled species, for example EBV in a human reference genome.
2351
- # Corresponds to the JSON property `ncbiTaxonId`
2352
- # @return [Fixnum]
2353
- attr_accessor :ncbi_taxon_id
2354
-
2355
- # The IDs of the reference objects that are part of this set.
2356
- # `Reference.md5checksum` must be unique within this set.
2357
- # Corresponds to the JSON property `referenceIds`
2358
- # @return [Array<String>]
2359
- attr_accessor :reference_ids
2360
-
2361
- # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
2362
- # with a version number, for example `NC_000001.11`.
2363
- # Corresponds to the JSON property `sourceAccessions`
2364
- # @return [Array<String>]
2365
- attr_accessor :source_accessions
2366
-
2367
- # The URI from which the references were obtained.
2368
- # Corresponds to the JSON property `sourceUri`
2369
- # @return [String]
2370
- attr_accessor :source_uri
2371
-
2372
- def initialize(**args)
2373
- update!(**args)
2374
- end
2375
-
2376
- # Update properties of this object
2377
- def update!(**args)
2378
- @assembly_id = args[:assembly_id] if args.key?(:assembly_id)
2379
- @description = args[:description] if args.key?(:description)
2380
- @id = args[:id] if args.key?(:id)
2381
- @md5checksum = args[:md5checksum] if args.key?(:md5checksum)
2382
- @ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
2383
- @reference_ids = args[:reference_ids] if args.key?(:reference_ids)
2384
- @source_accessions = args[:source_accessions] if args.key?(:source_accessions)
2385
- @source_uri = args[:source_uri] if args.key?(:source_uri)
2386
- end
2387
- end
2388
-
2389
- # The response to the RunPipeline method, returned in the operation's result
2390
- # field on success.
2391
- class RunPipelineResponse
2392
- include Google::Apis::Core::Hashable
2393
-
2394
- def initialize(**args)
2395
- update!(**args)
2396
- end
2397
-
2398
- # Update properties of this object
2399
- def update!(**args)
2400
- end
2401
- end
2402
-
2403
- # Runtime metadata that will be populated in the
2404
- # runtimeMetadata
2405
- # field of the Operation associated with a RunPipeline execution.
2406
- class RuntimeMetadata
2407
- include Google::Apis::Core::Hashable
2408
-
2409
- # Describes a Compute Engine resource that is being managed by a running
2410
- # pipeline.
2411
- # Corresponds to the JSON property `computeEngine`
2412
- # @return [Google::Apis::GenomicsV1::ComputeEngine]
2413
- attr_accessor :compute_engine
2414
-
2415
- def initialize(**args)
2416
- update!(**args)
2417
- end
2418
-
2419
- # Update properties of this object
2420
- def update!(**args)
2421
- @compute_engine = args[:compute_engine] if args.key?(:compute_engine)
2422
- end
2423
- end
2424
-
2425
- #
2426
- class SearchAnnotationSetsRequest
2427
- include Google::Apis::Core::Hashable
2428
-
2429
- # Required. The dataset IDs to search within. Caller must have `READ` access
2430
- # to these datasets.
2431
- # Corresponds to the JSON property `datasetIds`
2432
- # @return [Array<String>]
2433
- attr_accessor :dataset_ids
2434
-
2435
- # Only return annotations sets for which a substring of the name matches this
2436
- # string (case insensitive).
2437
- # Corresponds to the JSON property `name`
2438
- # @return [String]
2439
- attr_accessor :name
2440
-
2441
- # The maximum number of results to return in a single page. If unspecified,
2442
- # defaults to 128. The maximum value is 1024.
2443
- # Corresponds to the JSON property `pageSize`
2444
- # @return [Fixnum]
2445
- attr_accessor :page_size
2446
-
2447
- # The continuation token, which is used to page through large result sets.
2448
- # To get the next page of results, set this parameter to the value of
2449
- # `nextPageToken` from the previous response.
2450
- # Corresponds to the JSON property `pageToken`
2451
- # @return [String]
2452
- attr_accessor :page_token
2453
-
2454
- # If specified, only annotation sets associated with the given reference set
2455
- # are returned.
2456
- # Corresponds to the JSON property `referenceSetId`
2457
- # @return [String]
2458
- attr_accessor :reference_set_id
2459
-
2460
- # If specified, only annotation sets that have any of these types are
2461
- # returned.
2462
- # Corresponds to the JSON property `types`
2463
- # @return [Array<String>]
2464
- attr_accessor :types
2465
-
2466
- def initialize(**args)
2467
- update!(**args)
2468
- end
2469
-
2470
- # Update properties of this object
2471
- def update!(**args)
2472
- @dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
2473
- @name = args[:name] if args.key?(:name)
2474
- @page_size = args[:page_size] if args.key?(:page_size)
2475
- @page_token = args[:page_token] if args.key?(:page_token)
2476
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
2477
- @types = args[:types] if args.key?(:types)
2478
- end
2479
- end
2480
-
2481
- #
2482
- class SearchAnnotationSetsResponse
2483
- include Google::Apis::Core::Hashable
2484
-
2485
- # The matching annotation sets.
2486
- # Corresponds to the JSON property `annotationSets`
2487
- # @return [Array<Google::Apis::GenomicsV1::AnnotationSet>]
2488
- attr_accessor :annotation_sets
2489
-
2490
- # The continuation token, which is used to page through large result sets.
2491
- # Provide this value in a subsequent request to return the next page of
2492
- # results. This field will be empty if there aren't any additional results.
2493
- # Corresponds to the JSON property `nextPageToken`
2494
- # @return [String]
2495
- attr_accessor :next_page_token
2496
-
2497
- def initialize(**args)
2498
- update!(**args)
2499
- end
2500
-
2501
- # Update properties of this object
2502
- def update!(**args)
2503
- @annotation_sets = args[:annotation_sets] if args.key?(:annotation_sets)
2504
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2505
- end
2506
- end
2507
-
2508
- #
2509
- class SearchAnnotationsRequest
2510
- include Google::Apis::Core::Hashable
2511
-
2512
- # Required. The annotation sets to search within. The caller must have
2513
- # `READ` access to these annotation sets.
2514
- # All queried annotation sets must have the same type.
2515
- # Corresponds to the JSON property `annotationSetIds`
2516
- # @return [Array<String>]
2517
- attr_accessor :annotation_set_ids
2518
-
2519
- # The end position of the range on the reference, 0-based exclusive. If
2520
- # referenceId or
2521
- # referenceName
2522
- # must be specified, Defaults to the length of the reference.
2523
- # Corresponds to the JSON property `end`
2524
- # @return [Fixnum]
2525
- attr_accessor :end
2526
-
2527
- # The maximum number of results to return in a single page. If unspecified,
2528
- # defaults to 256. The maximum value is 2048.
2529
- # Corresponds to the JSON property `pageSize`
2530
- # @return [Fixnum]
2531
- attr_accessor :page_size
2532
-
2533
- # The continuation token, which is used to page through large result sets.
2534
- # To get the next page of results, set this parameter to the value of
2535
- # `nextPageToken` from the previous response.
2536
- # Corresponds to the JSON property `pageToken`
2537
- # @return [String]
2538
- attr_accessor :page_token
2539
-
2540
- # The ID of the reference to query.
2541
- # Corresponds to the JSON property `referenceId`
2542
- # @return [String]
2543
- attr_accessor :reference_id
2544
-
2545
- # The name of the reference to query, within the reference set associated
2546
- # with this query.
2547
- # Corresponds to the JSON property `referenceName`
2548
- # @return [String]
2549
- attr_accessor :reference_name
2550
-
2551
- # The start position of the range on the reference, 0-based inclusive. If
2552
- # specified,
2553
- # referenceId or
2554
- # referenceName
2555
- # must be specified. Defaults to 0.
2556
- # Corresponds to the JSON property `start`
2557
- # @return [Fixnum]
2558
- attr_accessor :start
2559
-
2560
- def initialize(**args)
2561
- update!(**args)
2562
- end
2563
-
2564
- # Update properties of this object
2565
- def update!(**args)
2566
- @annotation_set_ids = args[:annotation_set_ids] if args.key?(:annotation_set_ids)
2567
- @end = args[:end] if args.key?(:end)
2568
- @page_size = args[:page_size] if args.key?(:page_size)
2569
- @page_token = args[:page_token] if args.key?(:page_token)
2570
- @reference_id = args[:reference_id] if args.key?(:reference_id)
2571
- @reference_name = args[:reference_name] if args.key?(:reference_name)
2572
- @start = args[:start] if args.key?(:start)
2573
- end
2574
- end
2575
-
2576
- #
2577
- class SearchAnnotationsResponse
2578
- include Google::Apis::Core::Hashable
2579
-
2580
- # The matching annotations.
2581
- # Corresponds to the JSON property `annotations`
2582
- # @return [Array<Google::Apis::GenomicsV1::Annotation>]
2583
- attr_accessor :annotations
2584
-
2585
- # The continuation token, which is used to page through large result sets.
2586
- # Provide this value in a subsequent request to return the next page of
2587
- # results. This field will be empty if there aren't any additional results.
2588
- # Corresponds to the JSON property `nextPageToken`
2589
- # @return [String]
2590
- attr_accessor :next_page_token
2591
-
2592
- def initialize(**args)
2593
- update!(**args)
2594
- end
2595
-
2596
- # Update properties of this object
2597
- def update!(**args)
2598
- @annotations = args[:annotations] if args.key?(:annotations)
2599
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2600
- end
2601
- end
2602
-
2603
- # The call set search request.
2604
- class SearchCallSetsRequest
2605
- include Google::Apis::Core::Hashable
2606
-
2607
- # Only return call sets for which a substring of the name matches this
2608
- # string.
2609
- # Corresponds to the JSON property `name`
2610
- # @return [String]
2611
- attr_accessor :name
2612
-
2613
- # The maximum number of results to return in a single page. If unspecified,
2614
- # defaults to 1024.
2615
- # Corresponds to the JSON property `pageSize`
2616
- # @return [Fixnum]
2617
- attr_accessor :page_size
2618
-
2619
- # The continuation token, which is used to page through large result sets.
2620
- # To get the next page of results, set this parameter to the value of
2621
- # `nextPageToken` from the previous response.
2622
- # Corresponds to the JSON property `pageToken`
2623
- # @return [String]
2624
- attr_accessor :page_token
2625
-
2626
- # Restrict the query to call sets within the given variant sets. At least one
2627
- # ID must be provided.
2628
- # Corresponds to the JSON property `variantSetIds`
2629
- # @return [Array<String>]
2630
- attr_accessor :variant_set_ids
2631
-
2632
- def initialize(**args)
2633
- update!(**args)
2634
- end
2635
-
2636
- # Update properties of this object
2637
- def update!(**args)
2638
- @name = args[:name] if args.key?(:name)
2639
- @page_size = args[:page_size] if args.key?(:page_size)
2640
- @page_token = args[:page_token] if args.key?(:page_token)
2641
- @variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
2642
- end
2643
- end
2644
-
2645
- # The call set search response.
2646
- class SearchCallSetsResponse
2647
- include Google::Apis::Core::Hashable
2648
-
2649
- # The list of matching call sets.
2650
- # Corresponds to the JSON property `callSets`
2651
- # @return [Array<Google::Apis::GenomicsV1::CallSet>]
2652
- attr_accessor :call_sets
2653
-
2654
- # The continuation token, which is used to page through large result sets.
2655
- # Provide this value in a subsequent request to return the next page of
2656
- # results. This field will be empty if there aren't any additional results.
2657
- # Corresponds to the JSON property `nextPageToken`
2658
- # @return [String]
2659
- attr_accessor :next_page_token
2660
-
2661
- def initialize(**args)
2662
- update!(**args)
2663
- end
2664
-
2665
- # Update properties of this object
2666
- def update!(**args)
2667
- @call_sets = args[:call_sets] if args.key?(:call_sets)
2668
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2669
- end
2670
- end
2671
-
2672
- # The read group set search request.
2673
- class SearchReadGroupSetsRequest
2674
- include Google::Apis::Core::Hashable
2675
-
2676
- # Restricts this query to read group sets within the given datasets. At least
2677
- # one ID must be provided.
2678
- # Corresponds to the JSON property `datasetIds`
2679
- # @return [Array<String>]
2680
- attr_accessor :dataset_ids
2681
-
2682
- # Only return read group sets for which a substring of the name matches this
2683
- # string.
2684
- # Corresponds to the JSON property `name`
2685
- # @return [String]
2686
- attr_accessor :name
2687
-
2688
- # The maximum number of results to return in a single page. If unspecified,
2689
- # defaults to 256. The maximum value is 1024.
2690
- # Corresponds to the JSON property `pageSize`
2691
- # @return [Fixnum]
2692
- attr_accessor :page_size
2693
-
2694
- # The continuation token, which is used to page through large result sets.
2695
- # To get the next page of results, set this parameter to the value of
2696
- # `nextPageToken` from the previous response.
2697
- # Corresponds to the JSON property `pageToken`
2698
- # @return [String]
2699
- attr_accessor :page_token
2700
-
2701
- def initialize(**args)
2702
- update!(**args)
2703
- end
2704
-
2705
- # Update properties of this object
2706
- def update!(**args)
2707
- @dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
2708
- @name = args[:name] if args.key?(:name)
2709
- @page_size = args[:page_size] if args.key?(:page_size)
2710
- @page_token = args[:page_token] if args.key?(:page_token)
2711
- end
2712
- end
2713
-
2714
- # The read group set search response.
2715
- class SearchReadGroupSetsResponse
2716
- include Google::Apis::Core::Hashable
2717
-
2718
- # The continuation token, which is used to page through large result sets.
2719
- # Provide this value in a subsequent request to return the next page of
2720
- # results. This field will be empty if there aren't any additional results.
2721
- # Corresponds to the JSON property `nextPageToken`
2722
- # @return [String]
2723
- attr_accessor :next_page_token
2724
-
2725
- # The list of matching read group sets.
2726
- # Corresponds to the JSON property `readGroupSets`
2727
- # @return [Array<Google::Apis::GenomicsV1::ReadGroupSet>]
2728
- attr_accessor :read_group_sets
2729
-
2730
- def initialize(**args)
2731
- update!(**args)
2732
- end
2733
-
2734
- # Update properties of this object
2735
- def update!(**args)
2736
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2737
- @read_group_sets = args[:read_group_sets] if args.key?(:read_group_sets)
2738
- end
2739
- end
2740
-
2741
- # The read search request.
2742
- class SearchReadsRequest
2743
- include Google::Apis::Core::Hashable
2744
-
2745
- # The end position of the range on the reference, 0-based exclusive. If
2746
- # specified, `referenceName` must also be specified.
2747
- # Corresponds to the JSON property `end`
2748
- # @return [Fixnum]
2749
- attr_accessor :end
2750
-
2751
- # The maximum number of results to return in a single page. If unspecified,
2752
- # defaults to 256. The maximum value is 2048.
2753
- # Corresponds to the JSON property `pageSize`
2754
- # @return [Fixnum]
2755
- attr_accessor :page_size
2756
-
2757
- # The continuation token, which is used to page through large result sets.
2758
- # To get the next page of results, set this parameter to the value of
2759
- # `nextPageToken` from the previous response.
2760
- # Corresponds to the JSON property `pageToken`
2761
- # @return [String]
2762
- attr_accessor :page_token
2763
-
2764
- # The IDs of the read groups within which to search for reads. All specified
2765
- # read groups must belong to the same read group sets. Must specify one of
2766
- # `readGroupSetIds` or `readGroupIds`.
2767
- # Corresponds to the JSON property `readGroupIds`
2768
- # @return [Array<String>]
2769
- attr_accessor :read_group_ids
2770
-
2771
- # The IDs of the read groups sets within which to search for reads. All
2772
- # specified read group sets must be aligned against a common set of reference
2773
- # sequences; this defines the genomic coordinates for the query. Must specify
2774
- # one of `readGroupSetIds` or `readGroupIds`.
2775
- # Corresponds to the JSON property `readGroupSetIds`
2776
- # @return [Array<String>]
2777
- attr_accessor :read_group_set_ids
2778
-
2779
- # The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to
2780
- # `*`, only unmapped reads are returned. If unspecified, all reads (mapped
2781
- # and unmapped) are returned.
2782
- # Corresponds to the JSON property `referenceName`
2783
- # @return [String]
2784
- attr_accessor :reference_name
2785
-
2786
- # The start position of the range on the reference, 0-based inclusive. If
2787
- # specified, `referenceName` must also be specified.
2788
- # Corresponds to the JSON property `start`
2789
- # @return [Fixnum]
2790
- attr_accessor :start
2791
-
2792
- def initialize(**args)
2793
- update!(**args)
2794
- end
2795
-
2796
- # Update properties of this object
2797
- def update!(**args)
2798
- @end = args[:end] if args.key?(:end)
2799
- @page_size = args[:page_size] if args.key?(:page_size)
2800
- @page_token = args[:page_token] if args.key?(:page_token)
2801
- @read_group_ids = args[:read_group_ids] if args.key?(:read_group_ids)
2802
- @read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
2803
- @reference_name = args[:reference_name] if args.key?(:reference_name)
2804
- @start = args[:start] if args.key?(:start)
2805
- end
2806
- end
2807
-
2808
- # The read search response.
2809
- class SearchReadsResponse
2810
- include Google::Apis::Core::Hashable
2811
-
2812
- # The list of matching alignments sorted by mapped genomic coordinate,
2813
- # if any, ascending in position within the same reference. Unmapped reads,
2814
- # which have no position, are returned contiguously and are sorted in
2815
- # ascending lexicographic order by fragment name.
2816
- # Corresponds to the JSON property `alignments`
2817
- # @return [Array<Google::Apis::GenomicsV1::Read>]
2818
- attr_accessor :alignments
2819
-
2820
- # The continuation token, which is used to page through large result sets.
2821
- # Provide this value in a subsequent request to return the next page of
2822
- # results. This field will be empty if there aren't any additional results.
2823
- # Corresponds to the JSON property `nextPageToken`
2824
- # @return [String]
2825
- attr_accessor :next_page_token
2826
-
2827
- def initialize(**args)
2828
- update!(**args)
2829
- end
2830
-
2831
- # Update properties of this object
2832
- def update!(**args)
2833
- @alignments = args[:alignments] if args.key?(:alignments)
2834
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2835
- end
2836
- end
2837
-
2838
- #
2839
- class SearchReferenceSetsRequest
2840
- include Google::Apis::Core::Hashable
2841
-
2842
- # If present, return reference sets for which a prefix of any of
2843
- # sourceAccessions
2844
- # match any of these strings. Accession numbers typically have a main number
2845
- # and a version, for example `NC_000001.11`.
2846
- # Corresponds to the JSON property `accessions`
2847
- # @return [Array<String>]
2848
- attr_accessor :accessions
2849
-
2850
- # If present, return reference sets for which a substring of their
2851
- # `assemblyId` matches this string (case insensitive).
2852
- # Corresponds to the JSON property `assemblyId`
2853
- # @return [String]
2854
- attr_accessor :assembly_id
2855
-
2856
- # If present, return reference sets for which the
2857
- # md5checksum matches exactly.
2858
- # Corresponds to the JSON property `md5checksums`
2859
- # @return [Array<String>]
2860
- attr_accessor :md5checksums
2861
-
2862
- # The maximum number of results to return in a single page. If unspecified,
2863
- # defaults to 1024. The maximum value is 4096.
2864
- # Corresponds to the JSON property `pageSize`
2865
- # @return [Fixnum]
2866
- attr_accessor :page_size
2867
-
2868
- # The continuation token, which is used to page through large result sets.
2869
- # To get the next page of results, set this parameter to the value of
2870
- # `nextPageToken` from the previous response.
2871
- # Corresponds to the JSON property `pageToken`
2872
- # @return [String]
2873
- attr_accessor :page_token
2874
-
2875
- def initialize(**args)
2876
- update!(**args)
2877
- end
2878
-
2879
- # Update properties of this object
2880
- def update!(**args)
2881
- @accessions = args[:accessions] if args.key?(:accessions)
2882
- @assembly_id = args[:assembly_id] if args.key?(:assembly_id)
2883
- @md5checksums = args[:md5checksums] if args.key?(:md5checksums)
2884
- @page_size = args[:page_size] if args.key?(:page_size)
2885
- @page_token = args[:page_token] if args.key?(:page_token)
2886
- end
2887
- end
2888
-
2889
- #
2890
- class SearchReferenceSetsResponse
2891
- include Google::Apis::Core::Hashable
2892
-
2893
- # The continuation token, which is used to page through large result sets.
2894
- # Provide this value in a subsequent request to return the next page of
2895
- # results. This field will be empty if there aren't any additional results.
2896
- # Corresponds to the JSON property `nextPageToken`
2897
- # @return [String]
2898
- attr_accessor :next_page_token
2899
-
2900
- # The matching references sets.
2901
- # Corresponds to the JSON property `referenceSets`
2902
- # @return [Array<Google::Apis::GenomicsV1::ReferenceSet>]
2903
- attr_accessor :reference_sets
2904
-
2905
- def initialize(**args)
2906
- update!(**args)
2907
- end
2908
-
2909
- # Update properties of this object
2910
- def update!(**args)
2911
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2912
- @reference_sets = args[:reference_sets] if args.key?(:reference_sets)
2913
- end
2914
- end
2915
-
2916
- #
2917
- class SearchReferencesRequest
2918
- include Google::Apis::Core::Hashable
2919
-
2920
- # If present, return references for which a prefix of any of
2921
- # sourceAccessions match
2922
- # any of these strings. Accession numbers typically have a main number and a
2923
- # version, for example `GCF_000001405.26`.
2924
- # Corresponds to the JSON property `accessions`
2925
- # @return [Array<String>]
2926
- attr_accessor :accessions
2927
-
2928
- # If present, return references for which the
2929
- # md5checksum matches exactly.
2930
- # Corresponds to the JSON property `md5checksums`
2931
- # @return [Array<String>]
2932
- attr_accessor :md5checksums
2933
-
2934
- # The maximum number of results to return in a single page. If unspecified,
2935
- # defaults to 1024. The maximum value is 4096.
2936
- # Corresponds to the JSON property `pageSize`
2937
- # @return [Fixnum]
2938
- attr_accessor :page_size
2939
-
2940
- # The continuation token, which is used to page through large result sets.
2941
- # To get the next page of results, set this parameter to the value of
2942
- # `nextPageToken` from the previous response.
2943
- # Corresponds to the JSON property `pageToken`
2944
- # @return [String]
2945
- attr_accessor :page_token
2946
-
2947
- # If present, return only references which belong to this reference set.
2948
- # Corresponds to the JSON property `referenceSetId`
2949
- # @return [String]
2950
- attr_accessor :reference_set_id
2951
-
2952
- def initialize(**args)
2953
- update!(**args)
2954
- end
2955
-
2956
- # Update properties of this object
2957
- def update!(**args)
2958
- @accessions = args[:accessions] if args.key?(:accessions)
2959
- @md5checksums = args[:md5checksums] if args.key?(:md5checksums)
2960
- @page_size = args[:page_size] if args.key?(:page_size)
2961
- @page_token = args[:page_token] if args.key?(:page_token)
2962
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
2963
- end
2964
- end
2965
-
2966
- #
2967
- class SearchReferencesResponse
2968
- include Google::Apis::Core::Hashable
2969
-
2970
- # The continuation token, which is used to page through large result sets.
2971
- # Provide this value in a subsequent request to return the next page of
2972
- # results. This field will be empty if there aren't any additional results.
2973
- # Corresponds to the JSON property `nextPageToken`
2974
- # @return [String]
2975
- attr_accessor :next_page_token
2976
-
2977
- # The matching references.
2978
- # Corresponds to the JSON property `references`
2979
- # @return [Array<Google::Apis::GenomicsV1::Reference>]
2980
- attr_accessor :references
2981
-
2982
- def initialize(**args)
2983
- update!(**args)
2984
- end
2985
-
2986
- # Update properties of this object
2987
- def update!(**args)
2988
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2989
- @references = args[:references] if args.key?(:references)
2990
- end
2991
- end
2992
-
2993
- # The search variant sets request.
2994
- class SearchVariantSetsRequest
2995
- include Google::Apis::Core::Hashable
2996
-
2997
- # Exactly one dataset ID must be provided here. Only variant sets which
2998
- # belong to this dataset will be returned.
2999
- # Corresponds to the JSON property `datasetIds`
3000
- # @return [Array<String>]
3001
- attr_accessor :dataset_ids
3002
-
3003
- # The maximum number of results to return in a single page. If unspecified,
3004
- # defaults to 1024.
3005
- # Corresponds to the JSON property `pageSize`
3006
- # @return [Fixnum]
3007
- attr_accessor :page_size
3008
-
3009
- # The continuation token, which is used to page through large result sets.
3010
- # To get the next page of results, set this parameter to the value of
3011
- # `nextPageToken` from the previous response.
3012
- # Corresponds to the JSON property `pageToken`
3013
- # @return [String]
3014
- attr_accessor :page_token
3015
-
3016
- def initialize(**args)
3017
- update!(**args)
3018
- end
3019
-
3020
- # Update properties of this object
3021
- def update!(**args)
3022
- @dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
3023
- @page_size = args[:page_size] if args.key?(:page_size)
3024
- @page_token = args[:page_token] if args.key?(:page_token)
3025
- end
3026
- end
3027
-
3028
- # The search variant sets response.
3029
- class SearchVariantSetsResponse
3030
- include Google::Apis::Core::Hashable
3031
-
3032
- # The continuation token, which is used to page through large result sets.
3033
- # Provide this value in a subsequent request to return the next page of
3034
- # results. This field will be empty if there aren't any additional results.
3035
- # Corresponds to the JSON property `nextPageToken`
3036
- # @return [String]
3037
- attr_accessor :next_page_token
3038
-
3039
- # The variant sets belonging to the requested dataset.
3040
- # Corresponds to the JSON property `variantSets`
3041
- # @return [Array<Google::Apis::GenomicsV1::VariantSet>]
3042
- attr_accessor :variant_sets
3043
-
3044
- def initialize(**args)
3045
- update!(**args)
3046
- end
3047
-
3048
- # Update properties of this object
3049
- def update!(**args)
3050
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
3051
- @variant_sets = args[:variant_sets] if args.key?(:variant_sets)
3052
- end
3053
- end
3054
-
3055
- # The variant search request.
3056
- class SearchVariantsRequest
3057
- include Google::Apis::Core::Hashable
3058
-
3059
- # Only return variant calls which belong to call sets with these ids.
3060
- # Leaving this blank returns all variant calls. If a variant has no
3061
- # calls belonging to any of these call sets, it won't be returned at all.
3062
- # Corresponds to the JSON property `callSetIds`
3063
- # @return [Array<String>]
3064
- attr_accessor :call_set_ids
3065
-
3066
- # The end of the window, 0-based exclusive. If unspecified or 0, defaults to
3067
- # the length of the reference.
3068
- # Corresponds to the JSON property `end`
3069
- # @return [Fixnum]
3070
- attr_accessor :end
3071
-
3072
- # The maximum number of calls to return in a single page. Note that this
3073
- # limit may be exceeded in the event that a matching variant contains more
3074
- # calls than the requested maximum. If unspecified, defaults to 5000. The
3075
- # maximum value is 10000.
3076
- # Corresponds to the JSON property `maxCalls`
3077
- # @return [Fixnum]
3078
- attr_accessor :max_calls
3079
-
3080
- # The maximum number of variants to return in a single page. If unspecified,
3081
- # defaults to 5000. The maximum value is 10000.
3082
- # Corresponds to the JSON property `pageSize`
3083
- # @return [Fixnum]
3084
- attr_accessor :page_size
3085
-
3086
- # The continuation token, which is used to page through large result sets.
3087
- # To get the next page of results, set this parameter to the value of
3088
- # `nextPageToken` from the previous response.
3089
- # Corresponds to the JSON property `pageToken`
3090
- # @return [String]
3091
- attr_accessor :page_token
3092
-
3093
- # Required. Only return variants in this reference sequence.
3094
- # Corresponds to the JSON property `referenceName`
3095
- # @return [String]
3096
- attr_accessor :reference_name
3097
-
3098
- # The beginning of the window (0-based, inclusive) for which
3099
- # overlapping variants should be returned. If unspecified, defaults to 0.
3100
- # Corresponds to the JSON property `start`
3101
- # @return [Fixnum]
3102
- attr_accessor :start
3103
-
3104
- # Only return variants which have exactly this name.
3105
- # Corresponds to the JSON property `variantName`
3106
- # @return [String]
3107
- attr_accessor :variant_name
3108
-
3109
- # At most one variant set ID must be provided. Only variants from this
3110
- # variant set will be returned. If omitted, a call set id must be included in
3111
- # the request.
3112
- # Corresponds to the JSON property `variantSetIds`
3113
- # @return [Array<String>]
3114
- attr_accessor :variant_set_ids
3115
-
3116
- def initialize(**args)
3117
- update!(**args)
3118
- end
3119
-
3120
- # Update properties of this object
3121
- def update!(**args)
3122
- @call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
3123
- @end = args[:end] if args.key?(:end)
3124
- @max_calls = args[:max_calls] if args.key?(:max_calls)
3125
- @page_size = args[:page_size] if args.key?(:page_size)
3126
- @page_token = args[:page_token] if args.key?(:page_token)
3127
- @reference_name = args[:reference_name] if args.key?(:reference_name)
3128
- @start = args[:start] if args.key?(:start)
3129
- @variant_name = args[:variant_name] if args.key?(:variant_name)
3130
- @variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
3131
- end
3132
- end
3133
-
3134
- # The variant search response.
3135
- class SearchVariantsResponse
3136
- include Google::Apis::Core::Hashable
3137
-
3138
- # The continuation token, which is used to page through large result sets.
3139
- # Provide this value in a subsequent request to return the next page of
3140
- # results. This field will be empty if there aren't any additional results.
3141
- # Corresponds to the JSON property `nextPageToken`
3142
- # @return [String]
3143
- attr_accessor :next_page_token
3144
-
3145
- # The list of matching Variants.
3146
- # Corresponds to the JSON property `variants`
3147
- # @return [Array<Google::Apis::GenomicsV1::Variant>]
3148
- attr_accessor :variants
3149
-
3150
- def initialize(**args)
3151
- update!(**args)
3152
- end
3153
-
3154
- # Update properties of this object
3155
- def update!(**args)
3156
- @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
3157
- @variants = args[:variants] if args.key?(:variants)
3158
- end
3159
- end
3160
-
3161
- # Request message for `SetIamPolicy` method.
3162
- class SetIamPolicyRequest
3163
- include Google::Apis::Core::Hashable
3164
-
3165
- # Defines an Identity and Access Management (IAM) policy. It is used to
3166
- # specify access control policies for Cloud Platform resources.
3167
- # A `Policy` consists of a list of `bindings`. A `binding` binds a list of
3168
- # `members` to a `role`, where the members can be user accounts, Google groups,
3169
- # Google domains, and service accounts. A `role` is a named list of permissions
3170
- # defined by IAM.
3171
- # **JSON Example**
3172
- # `
3173
- # "bindings": [
3174
- # `
3175
- # "role": "roles/owner",
3176
- # "members": [
3177
- # "user:mike@example.com",
3178
- # "group:admins@example.com",
3179
- # "domain:google.com",
3180
- # "serviceAccount:my-other-app@appspot.gserviceaccount.com"
3181
- # ]
3182
- # `,
3183
- # `
3184
- # "role": "roles/viewer",
3185
- # "members": ["user:sean@example.com"]
3186
- # `
3187
- # ]
3188
- # `
3189
- # **YAML Example**
3190
- # bindings:
3191
- # - members:
3192
- # - user:mike@example.com
3193
- # - group:admins@example.com
3194
- # - domain:google.com
3195
- # - serviceAccount:my-other-app@appspot.gserviceaccount.com
3196
- # role: roles/owner
3197
- # - members:
3198
- # - user:sean@example.com
3199
- # role: roles/viewer
3200
- # For a description of IAM and its features, see the
3201
- # [IAM developer's guide](https://cloud.google.com/iam/docs).
3202
- # Corresponds to the JSON property `policy`
3203
- # @return [Google::Apis::GenomicsV1::Policy]
3204
- attr_accessor :policy
3205
-
3206
- def initialize(**args)
3207
- update!(**args)
3208
- end
3209
-
3210
- # Update properties of this object
3211
- def update!(**args)
3212
- @policy = args[:policy] if args.key?(:policy)
567
+ @compute_engine = args[:compute_engine] if args.key?(:compute_engine)
3213
568
  end
3214
569
  end
3215
570
 
3216
- # The `Status` type defines a logical error model that is suitable for different
3217
- # programming environments, including REST APIs and RPC APIs. It is used by
3218
- # [gRPC](https://github.com/grpc). The error model is designed to be:
571
+ # The `Status` type defines a logical error model that is suitable for
572
+ # different programming environments, including REST APIs and RPC APIs. It is
573
+ # used by [gRPC](https://github.com/grpc). The error model is designed to be:
3219
574
  # - Simple to use and understand for most users
3220
575
  # - Flexible enough to meet unexpected needs
3221
576
  # # Overview
3222
- # The `Status` message contains three pieces of data: error code, error message,
3223
- # and error details. The error code should be an enum value of
577
+ # The `Status` message contains three pieces of data: error code, error
578
+ # message, and error details. The error code should be an enum value of
3224
579
  # google.rpc.Code, but it may accept additional error codes if needed. The
3225
580
  # error message should be a developer-facing English message that helps
3226
581
  # developers *understand* and *resolve* the error. If a localized user-facing
@@ -3285,120 +640,6 @@ module Google
3285
640
  end
3286
641
  end
3287
642
 
3288
- # Request message for `TestIamPermissions` method.
3289
- class TestIamPermissionsRequest
3290
- include Google::Apis::Core::Hashable
3291
-
3292
- # REQUIRED: The set of permissions to check for the 'resource'.
3293
- # Permissions with wildcards (such as '*' or 'storage.*') are not allowed.
3294
- # Allowed permissions are&#58;
3295
- # * `genomics.datasets.create`
3296
- # * `genomics.datasets.delete`
3297
- # * `genomics.datasets.get`
3298
- # * `genomics.datasets.list`
3299
- # * `genomics.datasets.update`
3300
- # * `genomics.datasets.getIamPolicy`
3301
- # * `genomics.datasets.setIamPolicy`
3302
- # Corresponds to the JSON property `permissions`
3303
- # @return [Array<String>]
3304
- attr_accessor :permissions
3305
-
3306
- def initialize(**args)
3307
- update!(**args)
3308
- end
3309
-
3310
- # Update properties of this object
3311
- def update!(**args)
3312
- @permissions = args[:permissions] if args.key?(:permissions)
3313
- end
3314
- end
3315
-
3316
- # Response message for `TestIamPermissions` method.
3317
- class TestIamPermissionsResponse
3318
- include Google::Apis::Core::Hashable
3319
-
3320
- # A subset of `TestPermissionsRequest.permissions` that the caller is
3321
- # allowed.
3322
- # Corresponds to the JSON property `permissions`
3323
- # @return [Array<String>]
3324
- attr_accessor :permissions
3325
-
3326
- def initialize(**args)
3327
- update!(**args)
3328
- end
3329
-
3330
- # Update properties of this object
3331
- def update!(**args)
3332
- @permissions = args[:permissions] if args.key?(:permissions)
3333
- end
3334
- end
3335
-
3336
- # A transcript represents the assertion that a particular region of the
3337
- # reference genome may be transcribed as RNA.
3338
- class Transcript
3339
- include Google::Apis::Core::Hashable
3340
-
3341
- # The range of the coding sequence for this transcript, if any. To determine
3342
- # the exact ranges of coding sequence, intersect this range with those of the
3343
- # exons, if any. If there are any
3344
- # exons, the
3345
- # codingSequence must start
3346
- # and end within them.
3347
- # Note that in some cases, the reference genome will not exactly match the
3348
- # observed mRNA transcript e.g. due to variance in the source genome from
3349
- # reference. In these cases,
3350
- # exon.frame will not necessarily
3351
- # match the expected reference reading frame and coding exon reference bases
3352
- # cannot necessarily be concatenated to produce the original transcript mRNA.
3353
- # Corresponds to the JSON property `codingSequence`
3354
- # @return [Google::Apis::GenomicsV1::CodingSequence]
3355
- attr_accessor :coding_sequence
3356
-
3357
- # The <a href="http://en.wikipedia.org/wiki/Exon">exons</a> that compose
3358
- # this transcript. This field should be unset for genomes where transcript
3359
- # splicing does not occur, for example prokaryotes.
3360
- # Introns are regions of the transcript that are not included in the
3361
- # spliced RNA product. Though not explicitly modeled here, intron ranges can
3362
- # be deduced; all regions of this transcript that are not exons are introns.
3363
- # Exonic sequences do not necessarily code for a translational product
3364
- # (amino acids). Only the regions of exons bounded by the
3365
- # codingSequence correspond
3366
- # to coding DNA sequence.
3367
- # Exons are ordered by start position and may not overlap.
3368
- # Corresponds to the JSON property `exons`
3369
- # @return [Array<Google::Apis::GenomicsV1::Exon>]
3370
- attr_accessor :exons
3371
-
3372
- # The annotation ID of the gene from which this transcript is transcribed.
3373
- # Corresponds to the JSON property `geneId`
3374
- # @return [String]
3375
- attr_accessor :gene_id
3376
-
3377
- def initialize(**args)
3378
- update!(**args)
3379
- end
3380
-
3381
- # Update properties of this object
3382
- def update!(**args)
3383
- @coding_sequence = args[:coding_sequence] if args.key?(:coding_sequence)
3384
- @exons = args[:exons] if args.key?(:exons)
3385
- @gene_id = args[:gene_id] if args.key?(:gene_id)
3386
- end
3387
- end
3388
-
3389
- #
3390
- class UndeleteDatasetRequest
3391
- include Google::Apis::Core::Hashable
3392
-
3393
- def initialize(**args)
3394
- update!(**args)
3395
- end
3396
-
3397
- # Update properties of this object
3398
- def update!(**args)
3399
- end
3400
- end
3401
-
3402
643
  # An event generated when the execution of a container results in a
3403
644
  # non-zero exit status that was not otherwise ignored. Execution will
3404
645
  # continue, but only actions that are flagged as `ALWAYS_RUN` will be
@@ -3427,378 +668,6 @@ module Google
3427
668
  end
3428
669
  end
3429
670
 
3430
- # A variant represents a change in DNA sequence relative to a reference
3431
- # sequence. For example, a variant could represent a SNP or an insertion.
3432
- # Variants belong to a variant set.
3433
- # Each of the calls on a variant represent a determination of genotype with
3434
- # respect to that variant. For example, a call might assign probability of 0.32
3435
- # to the occurrence of a SNP named rs1234 in a sample named NA12345. A call
3436
- # belongs to a call set, which contains related calls typically from one
3437
- # sample.
3438
- class Variant
3439
- include Google::Apis::Core::Hashable
3440
-
3441
- # The bases that appear instead of the reference bases.
3442
- # Corresponds to the JSON property `alternateBases`
3443
- # @return [Array<String>]
3444
- attr_accessor :alternate_bases
3445
-
3446
- # The variant calls for this particular variant. Each one represents the
3447
- # determination of genotype with respect to this variant.
3448
- # Corresponds to the JSON property `calls`
3449
- # @return [Array<Google::Apis::GenomicsV1::VariantCall>]
3450
- attr_accessor :calls
3451
-
3452
- # The date this variant was created, in milliseconds from the epoch.
3453
- # Corresponds to the JSON property `created`
3454
- # @return [Fixnum]
3455
- attr_accessor :created
3456
-
3457
- # The end position (0-based) of this variant. This corresponds to the first
3458
- # base after the last base in the reference allele. So, the length of
3459
- # the reference allele is (end - start). This is useful for variants
3460
- # that don't explicitly give alternate bases, for example large deletions.
3461
- # Corresponds to the JSON property `end`
3462
- # @return [Fixnum]
3463
- attr_accessor :end
3464
-
3465
- # A list of filters (normally quality filters) this variant has failed.
3466
- # `PASS` indicates this variant has passed all filters.
3467
- # Corresponds to the JSON property `filter`
3468
- # @return [Array<String>]
3469
- attr_accessor :filter
3470
-
3471
- # The server-generated variant ID, unique across all variants.
3472
- # Corresponds to the JSON property `id`
3473
- # @return [String]
3474
- attr_accessor :id
3475
-
3476
- # A map of additional variant information. This must be of the form
3477
- # map<string, string[]> (string key mapping to a list of string values).
3478
- # Corresponds to the JSON property `info`
3479
- # @return [Hash<String,Array<Object>>]
3480
- attr_accessor :info
3481
-
3482
- # Names for the variant, for example a RefSNP ID.
3483
- # Corresponds to the JSON property `names`
3484
- # @return [Array<String>]
3485
- attr_accessor :names
3486
-
3487
- # A measure of how likely this variant is to be real.
3488
- # A higher value is better.
3489
- # Corresponds to the JSON property `quality`
3490
- # @return [Float]
3491
- attr_accessor :quality
3492
-
3493
- # The reference bases for this variant. They start at the given
3494
- # position.
3495
- # Corresponds to the JSON property `referenceBases`
3496
- # @return [String]
3497
- attr_accessor :reference_bases
3498
-
3499
- # The reference on which this variant occurs.
3500
- # (such as `chr20` or `X`)
3501
- # Corresponds to the JSON property `referenceName`
3502
- # @return [String]
3503
- attr_accessor :reference_name
3504
-
3505
- # The position at which this variant occurs (0-based).
3506
- # This corresponds to the first base of the string of reference bases.
3507
- # Corresponds to the JSON property `start`
3508
- # @return [Fixnum]
3509
- attr_accessor :start
3510
-
3511
- # The ID of the variant set this variant belongs to.
3512
- # Corresponds to the JSON property `variantSetId`
3513
- # @return [String]
3514
- attr_accessor :variant_set_id
3515
-
3516
- def initialize(**args)
3517
- update!(**args)
3518
- end
3519
-
3520
- # Update properties of this object
3521
- def update!(**args)
3522
- @alternate_bases = args[:alternate_bases] if args.key?(:alternate_bases)
3523
- @calls = args[:calls] if args.key?(:calls)
3524
- @created = args[:created] if args.key?(:created)
3525
- @end = args[:end] if args.key?(:end)
3526
- @filter = args[:filter] if args.key?(:filter)
3527
- @id = args[:id] if args.key?(:id)
3528
- @info = args[:info] if args.key?(:info)
3529
- @names = args[:names] if args.key?(:names)
3530
- @quality = args[:quality] if args.key?(:quality)
3531
- @reference_bases = args[:reference_bases] if args.key?(:reference_bases)
3532
- @reference_name = args[:reference_name] if args.key?(:reference_name)
3533
- @start = args[:start] if args.key?(:start)
3534
- @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
3535
- end
3536
- end
3537
-
3538
- #
3539
- class VariantAnnotation
3540
- include Google::Apis::Core::Hashable
3541
-
3542
- # The alternate allele for this variant. If multiple alternate alleles
3543
- # exist at this location, create a separate variant for each one, as they
3544
- # may represent distinct conditions.
3545
- # Corresponds to the JSON property `alternateBases`
3546
- # @return [String]
3547
- attr_accessor :alternate_bases
3548
-
3549
- # Describes the clinical significance of a variant.
3550
- # It is adapted from the ClinVar controlled vocabulary for clinical
3551
- # significance described at:
3552
- # http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/
3553
- # Corresponds to the JSON property `clinicalSignificance`
3554
- # @return [String]
3555
- attr_accessor :clinical_significance
3556
-
3557
- # The set of conditions associated with this variant.
3558
- # A condition describes the way a variant influences human health.
3559
- # Corresponds to the JSON property `conditions`
3560
- # @return [Array<Google::Apis::GenomicsV1::ClinicalCondition>]
3561
- attr_accessor :conditions
3562
-
3563
- # Effect of the variant on the coding sequence.
3564
- # Corresponds to the JSON property `effect`
3565
- # @return [String]
3566
- attr_accessor :effect
3567
-
3568
- # Google annotation ID of the gene affected by this variant. This should
3569
- # be provided when the variant is created.
3570
- # Corresponds to the JSON property `geneId`
3571
- # @return [String]
3572
- attr_accessor :gene_id
3573
-
3574
- # Google annotation IDs of the transcripts affected by this variant. These
3575
- # should be provided when the variant is created.
3576
- # Corresponds to the JSON property `transcriptIds`
3577
- # @return [Array<String>]
3578
- attr_accessor :transcript_ids
3579
-
3580
- # Type has been adapted from ClinVar's list of variant types.
3581
- # Corresponds to the JSON property `type`
3582
- # @return [String]
3583
- attr_accessor :type
3584
-
3585
- def initialize(**args)
3586
- update!(**args)
3587
- end
3588
-
3589
- # Update properties of this object
3590
- def update!(**args)
3591
- @alternate_bases = args[:alternate_bases] if args.key?(:alternate_bases)
3592
- @clinical_significance = args[:clinical_significance] if args.key?(:clinical_significance)
3593
- @conditions = args[:conditions] if args.key?(:conditions)
3594
- @effect = args[:effect] if args.key?(:effect)
3595
- @gene_id = args[:gene_id] if args.key?(:gene_id)
3596
- @transcript_ids = args[:transcript_ids] if args.key?(:transcript_ids)
3597
- @type = args[:type] if args.key?(:type)
3598
- end
3599
- end
3600
-
3601
- # A call represents the determination of genotype with respect to a particular
3602
- # variant. It may include associated information such as quality and phasing.
3603
- # For example, a call might assign a probability of 0.32 to the occurrence of
3604
- # a SNP named rs1234 in a call set with the name NA12345.
3605
- class VariantCall
3606
- include Google::Apis::Core::Hashable
3607
-
3608
- # The ID of the call set this variant call belongs to.
3609
- # Corresponds to the JSON property `callSetId`
3610
- # @return [String]
3611
- attr_accessor :call_set_id
3612
-
3613
- # The name of the call set this variant call belongs to.
3614
- # Corresponds to the JSON property `callSetName`
3615
- # @return [String]
3616
- attr_accessor :call_set_name
3617
-
3618
- # The genotype of this variant call. Each value represents either the value
3619
- # of the `referenceBases` field or a 1-based index into
3620
- # `alternateBases`. If a variant had a `referenceBases`
3621
- # value of `T` and an `alternateBases`
3622
- # value of `["A", "C"]`, and the `genotype` was
3623
- # `[2, 1]`, that would mean the call
3624
- # represented the heterozygous value `CA` for this variant.
3625
- # If the `genotype` was instead `[0, 1]`, the
3626
- # represented value would be `TA`. Ordering of the
3627
- # genotype values is important if the `phaseset` is present.
3628
- # If a genotype is not called (that is, a `.` is present in the
3629
- # GT string) -1 is returned.
3630
- # Corresponds to the JSON property `genotype`
3631
- # @return [Array<Fixnum>]
3632
- attr_accessor :genotype
3633
-
3634
- # The genotype likelihoods for this variant call. Each array entry
3635
- # represents how likely a specific genotype is for this call. The value
3636
- # ordering is defined by the GL tag in the VCF spec.
3637
- # If Phred-scaled genotype likelihood scores (PL) are available and
3638
- # log10(P) genotype likelihood scores (GL) are not, PL scores are converted
3639
- # to GL scores. If both are available, PL scores are stored in `info`.
3640
- # Corresponds to the JSON property `genotypeLikelihood`
3641
- # @return [Array<Float>]
3642
- attr_accessor :genotype_likelihood
3643
-
3644
- # A map of additional variant call information. This must be of the form
3645
- # map<string, string[]> (string key mapping to a list of string values).
3646
- # Corresponds to the JSON property `info`
3647
- # @return [Hash<String,Array<Object>>]
3648
- attr_accessor :info
3649
-
3650
- # If this field is present, this variant call's genotype ordering implies
3651
- # the phase of the bases and is consistent with any other variant calls in
3652
- # the same reference sequence which have the same phaseset value.
3653
- # When importing data from VCF, if the genotype data was phased but no
3654
- # phase set was specified this field will be set to `*`.
3655
- # Corresponds to the JSON property `phaseset`
3656
- # @return [String]
3657
- attr_accessor :phaseset
3658
-
3659
- def initialize(**args)
3660
- update!(**args)
3661
- end
3662
-
3663
- # Update properties of this object
3664
- def update!(**args)
3665
- @call_set_id = args[:call_set_id] if args.key?(:call_set_id)
3666
- @call_set_name = args[:call_set_name] if args.key?(:call_set_name)
3667
- @genotype = args[:genotype] if args.key?(:genotype)
3668
- @genotype_likelihood = args[:genotype_likelihood] if args.key?(:genotype_likelihood)
3669
- @info = args[:info] if args.key?(:info)
3670
- @phaseset = args[:phaseset] if args.key?(:phaseset)
3671
- end
3672
- end
3673
-
3674
- # A variant set is a collection of call sets and variants. It contains summary
3675
- # statistics of those contents. A variant set belongs to a dataset.
3676
- class VariantSet
3677
- include Google::Apis::Core::Hashable
3678
-
3679
- # The dataset to which this variant set belongs.
3680
- # Corresponds to the JSON property `datasetId`
3681
- # @return [String]
3682
- attr_accessor :dataset_id
3683
-
3684
- # A textual description of this variant set.
3685
- # Corresponds to the JSON property `description`
3686
- # @return [String]
3687
- attr_accessor :description
3688
-
3689
- # The server-generated variant set ID, unique across all variant sets.
3690
- # Corresponds to the JSON property `id`
3691
- # @return [String]
3692
- attr_accessor :id
3693
-
3694
- # The metadata associated with this variant set.
3695
- # Corresponds to the JSON property `metadata`
3696
- # @return [Array<Google::Apis::GenomicsV1::VariantSetMetadata>]
3697
- attr_accessor :metadata
3698
-
3699
- # User-specified, mutable name.
3700
- # Corresponds to the JSON property `name`
3701
- # @return [String]
3702
- attr_accessor :name
3703
-
3704
- # A list of all references used by the variants in a variant set
3705
- # with associated coordinate upper bounds for each one.
3706
- # Corresponds to the JSON property `referenceBounds`
3707
- # @return [Array<Google::Apis::GenomicsV1::ReferenceBound>]
3708
- attr_accessor :reference_bounds
3709
-
3710
- # The reference set to which the variant set is mapped. The reference set
3711
- # describes the alignment provenance of the variant set, while the
3712
- # `referenceBounds` describe the shape of the actual variant data. The
3713
- # reference set's reference names are a superset of those found in the
3714
- # `referenceBounds`.
3715
- # For example, given a variant set that is mapped to the GRCh38 reference set
3716
- # and contains a single variant on reference 'X', `referenceBounds` would
3717
- # contain only an entry for 'X', while the associated reference set
3718
- # enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
3719
- # Corresponds to the JSON property `referenceSetId`
3720
- # @return [String]
3721
- attr_accessor :reference_set_id
3722
-
3723
- def initialize(**args)
3724
- update!(**args)
3725
- end
3726
-
3727
- # Update properties of this object
3728
- def update!(**args)
3729
- @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
3730
- @description = args[:description] if args.key?(:description)
3731
- @id = args[:id] if args.key?(:id)
3732
- @metadata = args[:metadata] if args.key?(:metadata)
3733
- @name = args[:name] if args.key?(:name)
3734
- @reference_bounds = args[:reference_bounds] if args.key?(:reference_bounds)
3735
- @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
3736
- end
3737
- end
3738
-
3739
- # Metadata describes a single piece of variant call metadata.
3740
- # These data include a top level key and either a single value string (value)
3741
- # or a list of key-value pairs (info.)
3742
- # Value and info are mutually exclusive.
3743
- class VariantSetMetadata
3744
- include Google::Apis::Core::Hashable
3745
-
3746
- # A textual description of this metadata.
3747
- # Corresponds to the JSON property `description`
3748
- # @return [String]
3749
- attr_accessor :description
3750
-
3751
- # User-provided ID field, not enforced by this API.
3752
- # Two or more pieces of structured metadata with identical
3753
- # id and key fields are considered equivalent.
3754
- # Corresponds to the JSON property `id`
3755
- # @return [String]
3756
- attr_accessor :id
3757
-
3758
- # Remaining structured metadata key-value pairs. This must be of the form
3759
- # map<string, string[]> (string key mapping to a list of string values).
3760
- # Corresponds to the JSON property `info`
3761
- # @return [Hash<String,Array<Object>>]
3762
- attr_accessor :info
3763
-
3764
- # The top-level key.
3765
- # Corresponds to the JSON property `key`
3766
- # @return [String]
3767
- attr_accessor :key
3768
-
3769
- # The number of values that can be included in a field described by this
3770
- # metadata.
3771
- # Corresponds to the JSON property `number`
3772
- # @return [String]
3773
- attr_accessor :number
3774
-
3775
- # The type of data. Possible types include: Integer, Float,
3776
- # Flag, Character, and String.
3777
- # Corresponds to the JSON property `type`
3778
- # @return [String]
3779
- attr_accessor :type
3780
-
3781
- # The value field for simple metadata
3782
- # Corresponds to the JSON property `value`
3783
- # @return [String]
3784
- attr_accessor :value
3785
-
3786
- def initialize(**args)
3787
- update!(**args)
3788
- end
3789
-
3790
- # Update properties of this object
3791
- def update!(**args)
3792
- @description = args[:description] if args.key?(:description)
3793
- @id = args[:id] if args.key?(:id)
3794
- @info = args[:info] if args.key?(:info)
3795
- @key = args[:key] if args.key?(:key)
3796
- @number = args[:number] if args.key?(:number)
3797
- @type = args[:type] if args.key?(:type)
3798
- @value = args[:value] if args.key?(:value)
3799
- end
3800
- end
3801
-
3802
671
  # An event generated after a worker VM has been assigned to run the
3803
672
  # pipeline.
3804
673
  class WorkerAssignedEvent