google-api-client 0.12.0 → 0.13.0

data/generated/google/apis/genomics_v1/representations.rb

@@ -22,54 +22,6 @@ module Google
   module Apis
     module GenomicsV1
       
-      class MergeVariantsRequest
-        class Representation < Google::Apis::Core::JsonRepresentation; end
-      
-        include Google::Apis::Core::JsonObjectSupport
-      end
-      
-      class Read
-        class Representation < Google::Apis::Core::JsonRepresentation; end
-      
-        include Google::Apis::Core::JsonObjectSupport
-      end
-      
-      class BatchCreateAnnotationsRequest
-        class Representation < Google::Apis::Core::JsonRepresentation; end
-      
-        include Google::Apis::Core::JsonObjectSupport
-      end
-      
-      class CigarUnit
-        class Representation < Google::Apis::Core::JsonRepresentation; end
-      
-        include Google::Apis::Core::JsonObjectSupport
-      end
-      
-      class ReferenceSet
-        class Representation < Google::Apis::Core::JsonRepresentation; end
-      
-        include Google::Apis::Core::JsonObjectSupport
-      end
-      
-      class Transcript
-        class Representation < Google::Apis::Core::JsonRepresentation; end
-      
-        include Google::Apis::Core::JsonObjectSupport
-      end
-      
-      class AnnotationSet
-        class Representation < Google::Apis::Core::JsonRepresentation; end
-      
-        include Google::Apis::Core::JsonObjectSupport
-      end
-      
-      class Experiment
-        class Representation < Google::Apis::Core::JsonRepresentation; end
-      
-        include Google::Apis::Core::JsonObjectSupport
-      end
-      
       class ListDatasetsResponse
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
@@ -112,13 +64,13 @@ module Google
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class ListCoverageBucketsResponse
+      class VariantAnnotation
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class VariantAnnotation
+      class ListCoverageBucketsResponse
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
@@ -148,13 +100,13 @@ module Google
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class GetIamPolicyRequest
+      class SearchReferencesResponse
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class SearchReferencesResponse
+      class GetIamPolicyRequest
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
@@ -178,13 +130,13 @@ module Google
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class SearchReferencesRequest
+      class LinearAlignment
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class LinearAlignment
+      class SearchReferencesRequest
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
@@ -262,7 +214,7 @@ module Google
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class Annotation
+      class SearchReadsRequest
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
@@ -274,7 +226,7 @@ module Google
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class SearchReadsRequest
+      class Annotation
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
@@ -346,13 +298,13 @@ module Google
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class ReferenceBound
+      class BatchCreateAnnotationsResponse
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class BatchCreateAnnotationsResponse
+      class ReferenceBound
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
@@ -364,25 +316,25 @@ module Google
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class SearchCallSetsResponse
+      class Variant
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class Variant
+      class SearchCallSetsResponse
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class OperationMetadata
+      class SearchVariantsRequest
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class SearchVariantsRequest
+      class OperationMetadata
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
@@ -400,13 +352,13 @@ module Google
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class ClinicalCondition
+      class SearchReadsResponse
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class SearchReadsResponse
+      class ClinicalCondition
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
@@ -418,13 +370,13 @@ module Google
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class CoverageBucket
+      class ComputeEngine
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class ComputeEngine
+      class CoverageBucket
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
@@ -436,19 +388,19 @@ module Google
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class SearchVariantSetsRequest
+      class Reference
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class VariantSetMetadata
+      class SearchVariantSetsRequest
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
       end
       
-      class Reference
+      class VariantSetMetadata
         class Representation < Google::Apis::Core::JsonRepresentation; end
       
         include Google::Apis::Core::JsonObjectSupport
@@ -467,112 +419,51 @@ module Google
       end
       
       class MergeVariantsRequest
-        # @private
-        class Representation < Google::Apis::Core::JsonRepresentation
-          collection :variants, as: 'variants', class: Google::Apis::GenomicsV1::Variant, decorator: Google::Apis::GenomicsV1::Variant::Representation
+        class Representation < Google::Apis::Core::JsonRepresentation; end
       
-          hash :info_merge_config, as: 'infoMergeConfig'
-          property :variant_set_id, as: 'variantSetId'
-        end
+        include Google::Apis::Core::JsonObjectSupport
       end
       
       class Read
-        # @private
-        class Representation < Google::Apis::Core::JsonRepresentation
-          property :read_number, as: 'readNumber'
-          property :aligned_sequence, as: 'alignedSequence'
-          property :read_group_id, as: 'readGroupId'
-          property :next_mate_position, as: 'nextMatePosition', class: Google::Apis::GenomicsV1::Position, decorator: Google::Apis::GenomicsV1::Position::Representation
-      
-          hash :info, as: 'info', :class => Array do
-        include Representable::JSON::Collection
-        items
-      end
-      
-          property :proper_placement, as: 'properPlacement'
-          property :supplementary_alignment, as: 'supplementaryAlignment'
-          property :fragment_length, as: 'fragmentLength'
-          property :failed_vendor_quality_checks, as: 'failedVendorQualityChecks'
-          collection :aligned_quality, as: 'alignedQuality'
-          property :alignment, as: 'alignment', class: Google::Apis::GenomicsV1::LinearAlignment, decorator: Google::Apis::GenomicsV1::LinearAlignment::Representation
+        class Representation < Google::Apis::Core::JsonRepresentation; end
       
-          property :number_reads, as: 'numberReads'
-          property :id, as: 'id'
-          property :secondary_alignment, as: 'secondaryAlignment'
-          property :fragment_name, as: 'fragmentName'
-          property :read_group_set_id, as: 'readGroupSetId'
-          property :duplicate_fragment, as: 'duplicateFragment'
-        end
+        include Google::Apis::Core::JsonObjectSupport
       end
       
       class BatchCreateAnnotationsRequest
-        # @private
-        class Representation < Google::Apis::Core::JsonRepresentation
-          collection :annotations, as: 'annotations', class: Google::Apis::GenomicsV1::Annotation, decorator: Google::Apis::GenomicsV1::Annotation::Representation
+        class Representation < Google::Apis::Core::JsonRepresentation; end
       
-          property :request_id, as: 'requestId'
-        end
+        include Google::Apis::Core::JsonObjectSupport
       end
       
       class CigarUnit
-        # @private
-        class Representation < Google::Apis::Core::JsonRepresentation
-          property :operation_length, :numeric_string => true, as: 'operationLength'
-          property :operation, as: 'operation'
-          property :reference_sequence, as: 'referenceSequence'
-        end
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
       end
       
       class ReferenceSet
-        # @private
-        class Representation < Google::Apis::Core::JsonRepresentation
-          property :id, as: 'id'
-          collection :source_accessions, as: 'sourceAccessions'
-          property :description, as: 'description'
-          property :source_uri, as: 'sourceUri'
-          property :ncbi_taxon_id, as: 'ncbiTaxonId'
-          collection :reference_ids, as: 'referenceIds'
-          property :md5checksum, as: 'md5checksum'
-          property :assembly_id, as: 'assemblyId'
-        end
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
       end
       
       class Transcript
-        # @private
-        class Representation < Google::Apis::Core::JsonRepresentation
-          collection :exons, as: 'exons', class: Google::Apis::GenomicsV1::Exon, decorator: Google::Apis::GenomicsV1::Exon::Representation
-      
-          property :coding_sequence, as: 'codingSequence', class: Google::Apis::GenomicsV1::CodingSequence, decorator: Google::Apis::GenomicsV1::CodingSequence::Representation
+        class Representation < Google::Apis::Core::JsonRepresentation; end
       
-          property :gene_id, as: 'geneId'
-        end
+        include Google::Apis::Core::JsonObjectSupport
       end
       
       class AnnotationSet
-        # @private
-        class Representation < Google::Apis::Core::JsonRepresentation
-          property :id, as: 'id'
-          property :source_uri, as: 'sourceUri'
-          property :dataset_id, as: 'datasetId'
-          property :name, as: 'name'
-          property :reference_set_id, as: 'referenceSetId'
-          hash :info, as: 'info', :class => Array do
-        include Representable::JSON::Collection
-        items
-      end
+        class Representation < Google::Apis::Core::JsonRepresentation; end
       
-          property :type, as: 'type'
-        end
+        include Google::Apis::Core::JsonObjectSupport
       end
       
       class Experiment
-        # @private
-        class Representation < Google::Apis::Core::JsonRepresentation
-          property :sequencing_center, as: 'sequencingCenter'
-          property :platform_unit, as: 'platformUnit'
-          property :library_id, as: 'libraryId'
-          property :instrument_model, as: 'instrumentModel'
-        end
+        class Representation < Google::Apis::Core::JsonRepresentation; end
+      
+        include Google::Apis::Core::JsonObjectSupport
       end
       
       class ListDatasetsResponse
@@ -594,18 +485,18 @@ module Google
       class ExportReadGroupSetRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
+          property :project_id, as: 'projectId'
           property :export_uri, as: 'exportUri'
           collection :reference_names, as: 'referenceNames'
-          property :project_id, as: 'projectId'
         end
       end
       
       class Exon
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :start, :numeric_string => true, as: 'start'
           property :end, :numeric_string => true, as: 'end'
           property :frame, as: 'frame'
+          property :start, :numeric_string => true, as: 'start'
         end
       end
       
@@ -637,28 +528,17 @@ module Google
       class ImportVariantsRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
+          property :format, as: 'format'
           hash :info_merge_config, as: 'infoMergeConfig'
           property :variant_set_id, as: 'variantSetId'
           collection :source_uris, as: 'sourceUris'
           property :normalize_reference_names, as: 'normalizeReferenceNames'
-          property :format, as: 'format'
-        end
-      end
-      
-      class ListCoverageBucketsResponse
-        # @private
-        class Representation < Google::Apis::Core::JsonRepresentation
-          property :next_page_token, as: 'nextPageToken'
-          property :bucket_width, :numeric_string => true, as: 'bucketWidth'
-          collection :coverage_buckets, as: 'coverageBuckets', class: Google::Apis::GenomicsV1::CoverageBucket, decorator: Google::Apis::GenomicsV1::CoverageBucket::Representation
-      
         end
       end
       
       class VariantAnnotation
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          collection :transcript_ids, as: 'transcriptIds'
           property :type, as: 'type'
           property :alternate_bases, as: 'alternateBases'
           property :gene_id, as: 'geneId'
@@ -666,6 +546,17 @@ module Google
           collection :conditions, as: 'conditions', class: Google::Apis::GenomicsV1::ClinicalCondition, decorator: Google::Apis::GenomicsV1::ClinicalCondition::Representation
       
           property :effect, as: 'effect'
+          collection :transcript_ids, as: 'transcriptIds'
+        end
+      end
+      
+      class ListCoverageBucketsResponse
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :next_page_token, as: 'nextPageToken'
+          property :bucket_width, :numeric_string => true, as: 'bucketWidth'
+          collection :coverage_buckets, as: 'coverageBuckets', class: Google::Apis::GenomicsV1::CoverageBucket, decorator: Google::Apis::GenomicsV1::CoverageBucket::Representation
+      
         end
       end
       
@@ -683,22 +574,22 @@ module Google
       class SearchAnnotationsRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
+          property :page_token, as: 'pageToken'
+          property :page_size, as: 'pageSize'
           property :start, :numeric_string => true, as: 'start'
           collection :annotation_set_ids, as: 'annotationSetIds'
           property :reference_name, as: 'referenceName'
           property :reference_id, as: 'referenceId'
           property :end, :numeric_string => true, as: 'end'
-          property :page_token, as: 'pageToken'
-          property :page_size, as: 'pageSize'
         end
       end
       
       class OperationEvent
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :end_time, as: 'endTime'
           property :start_time, as: 'startTime'
           property :description, as: 'description'
+          property :end_time, as: 'endTime'
         end
       end
       
@@ -710,18 +601,18 @@ module Google
         end
       end
       
-      class GetIamPolicyRequest
+      class SearchReferencesResponse
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
+          collection :references, as: 'references', class: Google::Apis::GenomicsV1::Reference, decorator: Google::Apis::GenomicsV1::Reference::Representation
+      
+          property :next_page_token, as: 'nextPageToken'
         end
       end
       
-      class SearchReferencesResponse
+      class GetIamPolicyRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          collection :references, as: 'references', class: Google::Apis::GenomicsV1::Reference, decorator: Google::Apis::GenomicsV1::Reference::Representation
-      
-          property :next_page_token, as: 'nextPageToken'
         end
       end
       
@@ -735,12 +626,12 @@ module Google
       class SearchAnnotationSetsRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :page_token, as: 'pageToken'
-          property :page_size, as: 'pageSize'
           collection :dataset_ids, as: 'datasetIds'
           collection :types, as: 'types'
           property :name, as: 'name'
           property :reference_set_id, as: 'referenceSetId'
+          property :page_token, as: 'pageToken'
+          property :page_size, as: 'pageSize'
         end
       end
       
@@ -753,35 +644,35 @@ module Google
         end
       end
       
-      class SearchReferencesRequest
-        # @private
-        class Representation < Google::Apis::Core::JsonRepresentation
-          collection :accessions, as: 'accessions'
-          property :page_token, as: 'pageToken'
-          property :reference_set_id, as: 'referenceSetId'
-          property :page_size, as: 'pageSize'
-          collection :md5checksums, as: 'md5checksums'
-        end
-      end
-      
       class LinearAlignment
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :mapping_quality, as: 'mappingQuality'
           property :position, as: 'position', class: Google::Apis::GenomicsV1::Position, decorator: Google::Apis::GenomicsV1::Position::Representation
       
           collection :cigar, as: 'cigar', class: Google::Apis::GenomicsV1::CigarUnit, decorator: Google::Apis::GenomicsV1::CigarUnit::Representation
       
+          property :mapping_quality, as: 'mappingQuality'
         end
       end
       
-      class Dataset
+      class SearchReferencesRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :id, as: 'id'
-          property :create_time, as: 'createTime'
-          property :name, as: 'name'
-          property :project_id, as: 'projectId'
+          collection :md5checksums, as: 'md5checksums'
+          collection :accessions, as: 'accessions'
+          property :page_token, as: 'pageToken'
+          property :reference_set_id, as: 'referenceSetId'
+          property :page_size, as: 'pageSize'
+        end
+      end
+      
+      class Dataset
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :create_time, as: 'createTime'
+          property :name, as: 'name'
+          property :project_id, as: 'projectId'
+          property :id, as: 'id'
         end
       end
       
@@ -796,9 +687,9 @@ module Google
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
           property :id, as: 'id'
-          property :predicted_insert_size, as: 'predictedInsertSize'
           collection :programs, as: 'programs', class: Google::Apis::GenomicsV1::Program, decorator: Google::Apis::GenomicsV1::Program::Representation
       
+          property :predicted_insert_size, as: 'predictedInsertSize'
           property :description, as: 'description'
           property :sample_id, as: 'sampleId'
           property :dataset_id, as: 'datasetId'
@@ -817,11 +708,10 @@ module Google
       class ReadGroupSet
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :id, as: 'id'
           property :dataset_id, as: 'datasetId'
+          property :filename, as: 'filename'
           collection :read_groups, as: 'readGroups', class: Google::Apis::GenomicsV1::ReadGroup, decorator: Google::Apis::GenomicsV1::ReadGroup::Representation
       
-          property :filename, as: 'filename'
           property :name, as: 'name'
           property :reference_set_id, as: 'referenceSetId'
           hash :info, as: 'info', :class => Array do
@@ -829,6 +719,7 @@ module Google
         items
       end
       
+          property :id, as: 'id'
         end
       end
       
@@ -860,38 +751,38 @@ module Google
       class Position
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
+          property :position, :numeric_string => true, as: 'position'
           property :reference_name, as: 'referenceName'
           property :reverse_strand, as: 'reverseStrand'
-          property :position, :numeric_string => true, as: 'position'
         end
       end
       
       class SearchReferenceSetsResponse
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :next_page_token, as: 'nextPageToken'
           collection :reference_sets, as: 'referenceSets', class: Google::Apis::GenomicsV1::ReferenceSet, decorator: Google::Apis::GenomicsV1::ReferenceSet::Representation
       
+          property :next_page_token, as: 'nextPageToken'
         end
       end
       
       class SearchCallSetsRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          collection :variant_set_ids, as: 'variantSetIds'
           property :name, as: 'name'
           property :page_token, as: 'pageToken'
           property :page_size, as: 'pageSize'
+          collection :variant_set_ids, as: 'variantSetIds'
         end
       end
       
       class ImportReadGroupSetsRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :partition_strategy, as: 'partitionStrategy'
           property :dataset_id, as: 'datasetId'
           collection :source_uris, as: 'sourceUris'
           property :reference_set_id, as: 'referenceSetId'
+          property :partition_strategy, as: 'partitionStrategy'
         end
       end
       
@@ -905,27 +796,16 @@ module Google
         end
       end
       
-      class Annotation
+      class SearchReadsRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :reference_name, as: 'referenceName'
-          property :type, as: 'type'
-          hash :info, as: 'info', :class => Array do
-        include Representable::JSON::Collection
-        items
-      end
-      
+          collection :read_group_set_ids, as: 'readGroupSetIds'
+          collection :read_group_ids, as: 'readGroupIds'
           property :end, :numeric_string => true, as: 'end'
-          property :transcript, as: 'transcript', class: Google::Apis::GenomicsV1::Transcript, decorator: Google::Apis::GenomicsV1::Transcript::Representation
-      
+          property :page_token, as: 'pageToken'
+          property :page_size, as: 'pageSize'
           property :start, :numeric_string => true, as: 'start'
-          property :annotation_set_id, as: 'annotationSetId'
-          property :name, as: 'name'
-          property :variant, as: 'variant', class: Google::Apis::GenomicsV1::VariantAnnotation, decorator: Google::Apis::GenomicsV1::VariantAnnotation::Representation
-      
-          property :reference_id, as: 'referenceId'
-          property :id, as: 'id'
-          property :reverse_strand, as: 'reverseStrand'
+          property :reference_name, as: 'referenceName'
         end
       end
       
@@ -935,16 +815,27 @@ module Google
         end
       end
       
-      class SearchReadsRequest
+      class Annotation
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          collection :read_group_ids, as: 'readGroupIds'
+          property :annotation_set_id, as: 'annotationSetId'
+          property :name, as: 'name'
+          property :variant, as: 'variant', class: Google::Apis::GenomicsV1::VariantAnnotation, decorator: Google::Apis::GenomicsV1::VariantAnnotation::Representation
+      
+          property :reference_id, as: 'referenceId'
+          property :id, as: 'id'
+          property :reverse_strand, as: 'reverseStrand'
+          property :reference_name, as: 'referenceName'
+          property :type, as: 'type'
+          hash :info, as: 'info', :class => Array do
+        include Representable::JSON::Collection
+        items
+      end
+      
           property :end, :numeric_string => true, as: 'end'
-          property :page_token, as: 'pageToken'
-          property :page_size, as: 'pageSize'
+          property :transcript, as: 'transcript', class: Google::Apis::GenomicsV1::Transcript, decorator: Google::Apis::GenomicsV1::Transcript::Representation
+      
           property :start, :numeric_string => true, as: 'start'
-          property :reference_name, as: 'referenceName'
-          collection :read_group_set_ids, as: 'readGroupSetIds'
         end
       end
       
@@ -959,12 +850,12 @@ module Google
       class Operation
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
+          hash :metadata, as: 'metadata'
           property :done, as: 'done'
           hash :response, as: 'response'
           property :name, as: 'name'
           property :error, as: 'error', class: Google::Apis::GenomicsV1::Status, decorator: Google::Apis::GenomicsV1::Status::Representation
       
-          hash :metadata, as: 'metadata'
         end
       end
       
@@ -978,7 +869,6 @@ module Google
       class VariantCall
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :phaseset, as: 'phaseset'
           hash :info, as: 'info', :class => Array do
         include Representable::JSON::Collection
         items
@@ -988,6 +878,7 @@ module Google
           collection :genotype_likelihood, as: 'genotypeLikelihood'
           property :call_set_id, as: 'callSetId'
           collection :genotype, as: 'genotype'
+          property :phaseset, as: 'phaseset'
         end
       end
       
@@ -1035,32 +926,24 @@ module Google
       class Range
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :start, :numeric_string => true, as: 'start'
           property :end, :numeric_string => true, as: 'end'
           property :reference_name, as: 'referenceName'
+          property :start, :numeric_string => true, as: 'start'
         end
       end
       
       class VariantSet
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          collection :reference_bounds, as: 'referenceBounds', class: Google::Apis::GenomicsV1::ReferenceBound, decorator: Google::Apis::GenomicsV1::ReferenceBound::Representation
-      
-          property :id, as: 'id'
           property :description, as: 'description'
           property :dataset_id, as: 'datasetId'
           property :name, as: 'name'
           property :reference_set_id, as: 'referenceSetId'
           collection :metadata, as: 'metadata', class: Google::Apis::GenomicsV1::VariantSetMetadata, decorator: Google::Apis::GenomicsV1::VariantSetMetadata::Representation
       
-        end
-      end
+          collection :reference_bounds, as: 'referenceBounds', class: Google::Apis::GenomicsV1::ReferenceBound, decorator: Google::Apis::GenomicsV1::ReferenceBound::Representation
       
-      class ReferenceBound
-        # @private
-        class Representation < Google::Apis::Core::JsonRepresentation
-          property :upper_bound, :numeric_string => true, as: 'upperBound'
-          property :reference_name, as: 'referenceName'
+          property :id, as: 'id'
         end
       end
       
@@ -1072,30 +955,26 @@ module Google
         end
       end
       
-      class ListOperationsResponse
+      class ReferenceBound
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :next_page_token, as: 'nextPageToken'
-          collection :operations, as: 'operations', class: Google::Apis::GenomicsV1::Operation, decorator: Google::Apis::GenomicsV1::Operation::Representation
-      
+          property :reference_name, as: 'referenceName'
+          property :upper_bound, :numeric_string => true, as: 'upperBound'
         end
       end
       
-      class SearchCallSetsResponse
+      class ListOperationsResponse
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :next_page_token, as: 'nextPageToken'
-          collection :call_sets, as: 'callSets', class: Google::Apis::GenomicsV1::CallSet, decorator: Google::Apis::GenomicsV1::CallSet::Representation
+          collection :operations, as: 'operations', class: Google::Apis::GenomicsV1::Operation, decorator: Google::Apis::GenomicsV1::Operation::Representation
       
+          property :next_page_token, as: 'nextPageToken'
         end
       end
       
       class Variant
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :start, :numeric_string => true, as: 'start'
-          property :quality, as: 'quality'
-          property :id, as: 'id'
           property :variant_set_id, as: 'variantSetId'
           property :reference_name, as: 'referenceName'
           hash :info, as: 'info', :class => Array do
@@ -1104,54 +983,66 @@ module Google
       end
       
           property :reference_bases, as: 'referenceBases'
-          collection :names, as: 'names'
           collection :alternate_bases, as: 'alternateBases'
-          collection :filter, as: 'filter'
+          collection :names, as: 'names'
           property :end, :numeric_string => true, as: 'end'
+          collection :filter, as: 'filter'
           collection :calls, as: 'calls', class: Google::Apis::GenomicsV1::VariantCall, decorator: Google::Apis::GenomicsV1::VariantCall::Representation
       
           property :created, :numeric_string => true, as: 'created'
+          property :start, :numeric_string => true, as: 'start'
+          property :quality, as: 'quality'
+          property :id, as: 'id'
         end
       end
       
-      class OperationMetadata
+      class SearchCallSetsResponse
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          hash :runtime_metadata, as: 'runtimeMetadata'
-          hash :labels, as: 'labels'
-          property :create_time, as: 'createTime'
-          property :project_id, as: 'projectId'
-          property :client_id, as: 'clientId'
-          property :end_time, as: 'endTime'
-          collection :events, as: 'events', class: Google::Apis::GenomicsV1::OperationEvent, decorator: Google::Apis::GenomicsV1::OperationEvent::Representation
+          property :next_page_token, as: 'nextPageToken'
+          collection :call_sets, as: 'callSets', class: Google::Apis::GenomicsV1::CallSet, decorator: Google::Apis::GenomicsV1::CallSet::Representation
       
-          property :start_time, as: 'startTime'
-          hash :request, as: 'request'
         end
       end
       
       class SearchVariantsRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :variant_name, as: 'variantName'
-          property :start, :numeric_string => true, as: 'start'
           property :reference_name, as: 'referenceName'
           collection :variant_set_ids, as: 'variantSetIds'
           property :end, :numeric_string => true, as: 'end'
-          property :page_token, as: 'pageToken'
           property :max_calls, as: 'maxCalls'
+          property :page_token, as: 'pageToken'
           property :page_size, as: 'pageSize'
           collection :call_set_ids, as: 'callSetIds'
+          property :start, :numeric_string => true, as: 'start'
+          property :variant_name, as: 'variantName'
+        end
+      end
+      
+      class OperationMetadata
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          hash :runtime_metadata, as: 'runtimeMetadata'
+          hash :labels, as: 'labels'
+          property :create_time, as: 'createTime'
+          property :project_id, as: 'projectId'
+          property :client_id, as: 'clientId'
+          property :end_time, as: 'endTime'
+          collection :events, as: 'events', class: Google::Apis::GenomicsV1::OperationEvent, decorator: Google::Apis::GenomicsV1::OperationEvent::Representation
+      
+          property :start_time, as: 'startTime'
+          hash :request, as: 'request'
         end
       end
       
       class SearchReadGroupSetsRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
+          collection :dataset_ids, as: 'datasetIds'
           property :name, as: 'name'
           property :page_token, as: 'pageToken'
           property :page_size, as: 'pageSize'
-          collection :dataset_ids, as: 'datasetIds'
         end
       end
       
@@ -1164,34 +1055,44 @@ module Google
         end
       end
       
-      class ClinicalCondition
+      class SearchReadsResponse
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :concept_id, as: 'conceptId'
-          collection :names, as: 'names'
-          property :omim_id, as: 'omimId'
-          collection :external_ids, as: 'externalIds', class: Google::Apis::GenomicsV1::ExternalId, decorator: Google::Apis::GenomicsV1::ExternalId::Representation
+          property :next_page_token, as: 'nextPageToken'
+          collection :alignments, as: 'alignments', class: Google::Apis::GenomicsV1::Read, decorator: Google::Apis::GenomicsV1::Read::Representation
       
         end
       end
       
-      class SearchReadsResponse
+      class ClinicalCondition
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :next_page_token, as: 'nextPageToken'
-          collection :alignments, as: 'alignments', class: Google::Apis::GenomicsV1::Read, decorator: Google::Apis::GenomicsV1::Read::Representation
+          collection :external_ids, as: 'externalIds', class: Google::Apis::GenomicsV1::ExternalId, decorator: Google::Apis::GenomicsV1::ExternalId::Representation
       
+          property :concept_id, as: 'conceptId'
+          collection :names, as: 'names'
+          property :omim_id, as: 'omimId'
         end
       end
       
       class Program
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
+          property :name, as: 'name'
           property :command_line, as: 'commandLine'
           property :prev_program_id, as: 'prevProgramId'
           property :id, as: 'id'
           property :version, as: 'version'
-          property :name, as: 'name'
+        end
+      end
+      
+      class ComputeEngine
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :machine_type, as: 'machineType'
+          collection :disk_names, as: 'diskNames'
+          property :instance_name, as: 'instanceName'
+          property :zone, as: 'zone'
         end
       end
       
@@ -1204,79 +1105,178 @@ module Google
         end
       end
       
-      class ComputeEngine
+      class ExternalId
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :machine_type, as: 'machineType'
-          collection :disk_names, as: 'diskNames'
-          property :instance_name, as: 'instanceName'
-          property :zone, as: 'zone'
+          property :id, as: 'id'
+          property :source_name, as: 'sourceName'
         end
       end
       
-      class ExternalId
+      class Reference
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
+          collection :source_accessions, as: 'sourceAccessions'
+          property :ncbi_taxon_id, as: 'ncbiTaxonId'
+          property :source_uri, as: 'sourceUri'
+          property :name, as: 'name'
+          property :md5checksum, as: 'md5checksum'
           property :id, as: 'id'
-          property :source_name, as: 'sourceName'
+          property :length, :numeric_string => true, as: 'length'
         end
       end
       
       class SearchVariantSetsRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          collection :dataset_ids, as: 'datasetIds'
           property :page_token, as: 'pageToken'
           property :page_size, as: 'pageSize'
+          collection :dataset_ids, as: 'datasetIds'
         end
       end
       
       class VariantSetMetadata
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
+          property :type, as: 'type'
           hash :info, as: 'info', :class => Array do
         include Representable::JSON::Collection
         items
       end
       
-          property :type, as: 'type'
-          property :number, as: 'number'
-          property :id, as: 'id'
           property :value, as: 'value'
+          property :id, as: 'id'
+          property :number, as: 'number'
           property :key, as: 'key'
           property :description, as: 'description'
         end
       end
       
-      class Reference
+      class SearchReferenceSetsRequest
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :name, as: 'name'
-          property :md5checksum, as: 'md5checksum'
+          collection :accessions, as: 'accessions'
+          property :page_token, as: 'pageToken'
+          property :page_size, as: 'pageSize'
+          property :assembly_id, as: 'assemblyId'
+          collection :md5checksums, as: 'md5checksums'
+        end
+      end
+      
+      class SetIamPolicyRequest
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :policy, as: 'policy', class: Google::Apis::GenomicsV1::Policy, decorator: Google::Apis::GenomicsV1::Policy::Representation
+      
+        end
+      end
+      
+      class MergeVariantsRequest
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          hash :info_merge_config, as: 'infoMergeConfig'
+          property :variant_set_id, as: 'variantSetId'
+          collection :variants, as: 'variants', class: Google::Apis::GenomicsV1::Variant, decorator: Google::Apis::GenomicsV1::Variant::Representation
+      
+        end
+      end
+      
+      class Read
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :alignment, as: 'alignment', class: Google::Apis::GenomicsV1::LinearAlignment, decorator: Google::Apis::GenomicsV1::LinearAlignment::Representation
+      
+          property :number_reads, as: 'numberReads'
           property :id, as: 'id'
-          property :length, :numeric_string => true, as: 'length'
+          property :secondary_alignment, as: 'secondaryAlignment'
+          property :fragment_name, as: 'fragmentName'
+          property :read_group_set_id, as: 'readGroupSetId'
+          property :duplicate_fragment, as: 'duplicateFragment'
+          property :read_number, as: 'readNumber'
+          property :read_group_id, as: 'readGroupId'
+          property :aligned_sequence, as: 'alignedSequence'
+          hash :info, as: 'info', :class => Array do
+        include Representable::JSON::Collection
+        items
+      end
+      
+          property :next_mate_position, as: 'nextMatePosition', class: Google::Apis::GenomicsV1::Position, decorator: Google::Apis::GenomicsV1::Position::Representation
+      
+          property :supplementary_alignment, as: 'supplementaryAlignment'
+          property :proper_placement, as: 'properPlacement'
+          property :fragment_length, as: 'fragmentLength'
+          property :failed_vendor_quality_checks, as: 'failedVendorQualityChecks'
+          collection :aligned_quality, as: 'alignedQuality'
+        end
+      end
+      
+      class BatchCreateAnnotationsRequest
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :request_id, as: 'requestId'
+          collection :annotations, as: 'annotations', class: Google::Apis::GenomicsV1::Annotation, decorator: Google::Apis::GenomicsV1::Annotation::Representation
+      
+        end
+      end
+      
+      class CigarUnit
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :operation, as: 'operation'
+          property :reference_sequence, as: 'referenceSequence'
+          property :operation_length, :numeric_string => true, as: 'operationLength'
+        end
+      end
+      
+      class ReferenceSet
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :description, as: 'description'
           collection :source_accessions, as: 'sourceAccessions'
           property :source_uri, as: 'sourceUri'
           property :ncbi_taxon_id, as: 'ncbiTaxonId'
+          collection :reference_ids, as: 'referenceIds'
+          property :assembly_id, as: 'assemblyId'
+          property :md5checksum, as: 'md5checksum'
+          property :id, as: 'id'
         end
       end
       
-      class SearchReferenceSetsRequest
+      class Transcript
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          collection :accessions, as: 'accessions'
-          property :page_token, as: 'pageToken'
-          property :page_size, as: 'pageSize'
-          property :assembly_id, as: 'assemblyId'
-          collection :md5checksums, as: 'md5checksums'
+          property :coding_sequence, as: 'codingSequence', class: Google::Apis::GenomicsV1::CodingSequence, decorator: Google::Apis::GenomicsV1::CodingSequence::Representation
+      
+          property :gene_id, as: 'geneId'
+          collection :exons, as: 'exons', class: Google::Apis::GenomicsV1::Exon, decorator: Google::Apis::GenomicsV1::Exon::Representation
+      
         end
       end
       
-      class SetIamPolicyRequest
+      class AnnotationSet
         # @private
         class Representation < Google::Apis::Core::JsonRepresentation
-          property :policy, as: 'policy', class: Google::Apis::GenomicsV1::Policy, decorator: Google::Apis::GenomicsV1::Policy::Representation
+          property :source_uri, as: 'sourceUri'
+          property :dataset_id, as: 'datasetId'
+          property :name, as: 'name'
+          property :reference_set_id, as: 'referenceSetId'
+          hash :info, as: 'info', :class => Array do
+        include Representable::JSON::Collection
+        items
+      end
+      
+          property :type, as: 'type'
+          property :id, as: 'id'
+        end
+      end
       
+      class Experiment
+        # @private
+        class Representation < Google::Apis::Core::JsonRepresentation
+          property :sequencing_center, as: 'sequencingCenter'
+          property :platform_unit, as: 'platformUnit'
+          property :library_id, as: 'libraryId'
+          property :instrument_model, as: 'instrumentModel'
         end
       end
     end