gentooboontoo-gphys 0.6.1.3
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- checksums.yaml +7 -0
- data/ChangeLog +1255 -0
- data/README +32 -0
- data/bin/gdir_client +9 -0
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- data/lib/numru/ggraph_on_merdional_section.rb +178 -0
- data/lib/numru/gphys/attribute.rb +130 -0
- data/lib/numru/gphys/attributenetcdf.rb +80 -0
- data/lib/numru/gphys/axis.rb +958 -0
- data/lib/numru/gphys/coordmapping.rb +286 -0
- data/lib/numru/gphys/coordtransform.rb +209 -0
- data/lib/numru/gphys/derivative.rb +297 -0
- data/lib/numru/gphys/ep_flux.rb +868 -0
- data/lib/numru/gphys/gpcommon.rb +52 -0
- data/lib/numru/gphys/gphys.rb +1121 -0
- data/lib/numru/gphys/gphys_fft.rb +538 -0
- data/lib/numru/gphys/gphys_grads_io.rb +212 -0
- data/lib/numru/gphys/gphys_grib_io.rb +214 -0
- data/lib/numru/gphys/gphys_io.rb +363 -0
- data/lib/numru/gphys/gphys_io_common.rb +126 -0
- data/lib/numru/gphys/gphys_netcdf_io.rb +767 -0
- data/lib/numru/gphys/gphys_nusdas_io.rb +78 -0
- data/lib/numru/gphys/grads_gridded.rb +1539 -0
- data/lib/numru/gphys/grib.rb +2005 -0
- data/lib/numru/gphys/grib_params.rb +1270 -0
- data/lib/numru/gphys/grid.rb +602 -0
- data/lib/numru/gphys/netcdf_convention.rb +366 -0
- data/lib/numru/gphys/subsetmapping.rb +332 -0
- data/lib/numru/gphys/unumeric.rb +452 -0
- data/lib/numru/gphys/varray.rb +1079 -0
- data/lib/numru/gphys/varraycomposite.rb +415 -0
- data/lib/numru/gphys/varraygrads.rb +225 -0
- data/lib/numru/gphys/varraygrib.rb +177 -0
- data/lib/numru/gphys/varraynetcdf.rb +348 -0
- data/lib/numru/gphys/varraynusdas.rb +59 -0
- data/lib/numru/gphys.rb +7 -0
- data/lib/numru/htdir.rb +170 -0
- data/lib/numru/vizshot.rb +697 -0
- data/sample/cira86_to_nc.rb +122 -0
- data/sample/druby_cli1.rb +21 -0
- data/sample/druby_cli2.rb +34 -0
- data/sample/druby_serv1.rb +30 -0
- data/sample/druby_serv2.rb +64 -0
- data/sample/ep_flux/demo_NCEP_1.rb +48 -0
- data/sample/ep_flux/demo_NCEP_2.rb +57 -0
- data/sample/ep_flux/demo_NCEP_3.rb +81 -0
- data/sample/ggraph_latlon_labelling_dr002690.rb +159 -0
- data/sample/ggraph_mapfit-axes_dr002687.rb +131 -0
- data/sample/map_projection.rb +121 -0
- data/test/test_ep_flux.rb +533 -0
- data/testdata/T.jan.ctl +12 -0
- data/testdata/T.jan.dat +0 -0
- data/testdata/T.jan.grib +0 -0
- data/testdata/T.jan.nc +0 -0
- data/testdata/T.jan.packed.withmiss.nc +0 -0
- data/testdata/UV.jan.nc +0 -0
- data/testdata/cira86.dat +1332 -0
- metadata +527 -0
data/doc/grid.html
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<?xml version="1.0" ?>
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<!DOCTYPE html
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PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<html xmlns="http://www.w3.org/1999/xhtml">
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<head>
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<title>../lib/numru/gphys/grid.rb</title>
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</head>
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<body>
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<h1><a name="label:0" id="label:0">class NumRU::Grid</a></h1><!-- RDLabel: "class NumRU::Grid" -->
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<p>A class to handle discretized grids of physical quantities.</p>
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<h2><a name="label:1" id="label:1">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
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<dl>
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<dt><h4><a name="label:2" id="label:2"><code>Grid.new( *<var>axes</var> )</code></a></h4></dt><!-- RDLabel: "Grid.new" -->
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<dd>
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<p>Constructor.</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>a Grid</li>
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</ul></dd>
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</dl>
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<h2><a name="label:3" id="label:3">Instance Methods</a></h2><!-- RDLabel: "Instance Methods" -->
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<dl>
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<dt><h4><a name="label:4" id="label:4"><code>axnames</code></a></h4></dt><!-- RDLabel: "axnames" -->
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<dd>
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<p>Returns the names of the axes</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>an Array of String</li>
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</ul></dd>
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<dt><h4><a name="label:5" id="label:5"><code>lost_axes</code></a></h4></dt><!-- RDLabel: "lost_axes" -->
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<dd>
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<p>Returns info on axes eliminated during operations.</p>
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<p>Useful for annotation in plots, for example (See the code of GGraph
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for an application).</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>an Array of String</li>
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</ul></dd>
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<dt><h4><a name="label:6" id="label:6"><code>axis(<var>dim_or_dimname</var>)</code></a></h4></dt><!-- RDLabel: "axis" -->
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<dd>
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<p>Returns an Axis</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>dim_or_dimname (String or Integer) to specify an axis.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>an Axis</li>
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</ul></dd>
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<dt><h4><a name="label:7" id="label:7"><code>dim_index(<var>dimname</var>)</code></a></h4></dt><!-- RDLabel: "dim_index" -->
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<dd>
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<p>Returns the integer id (count from zero) of the dimension</p>
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<p>ARGUMENT</p>
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<ul>
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<li>dimname (String or Integer) : this method is trivial if is is an integer</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>an Integer</li>
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</ul></dd>
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<dt><h4><a name="label:8" id="label:8"><code>set_axis(<var>dim_or_dimname</var>,<var>ax</var>)</code></a></h4></dt><!-- RDLabel: "set_axis" -->
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<dd>
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<p>Sets an axis.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>dim_or_dimname (String or Integer) to specify an axis.</li>
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<li>ax (Axis) the axis</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>self</li>
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</ul></dd>
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<dt><h4><a name="label:9" id="label:9"><code>set_lost_axes( <var>lost</var> )</code></a></h4></dt><!-- RDLabel: "set_lost_axes" -->
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<dd>
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<p>Sets info on axes eliminated.</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>self</li>
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</ul></dd>
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<dt><h4><a name="label:10" id="label:10"><code>add_lost_axes( <var>lost</var> )</code></a></h4></dt><!-- RDLabel: "add_lost_axes" -->
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<dd>
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<p>Adds info on axes eliminated to existing ones.</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>self</li>
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</ul></dd>
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<dt><h4><a name="label:11" id="label:11"><code>delete_axes( <var>at</var>, <var>deleted_by</var>=<var>nil</var> )</code></a></h4></dt><!-- RDLabel: "delete_axes" -->
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<dd>
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<p>Delete an axis.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>at (String or Integer) to specify an axis.</li>
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<li>deleted_by (String or nil) if non-nil, it is written in
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the internal lost-axis info. Best if you put the name of the
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method, in which this method is called.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>a Grid</li>
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</ul></dd>
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<dt><h4><a name="label:12" id="label:12"><code>copy</code></a></h4></dt><!-- RDLabel: "copy" -->
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<dd>
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<p>Makes a deep clone onto memory.</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>a Grid</li>
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</ul></dd>
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<dt><h4><a name="label:13" id="label:13"><code>merge(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "merge" -->
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<dd>
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<p>merge two grids by basically using copies of self's axes but
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using the other's if the length in self is 1 and
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the length in the other is longer</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>other (Grid)</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>a Grid</li>
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</ul></dd>
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<dt><h4><a name="label:14" id="label:14"><code>shape</code></a></h4></dt><!-- RDLabel: "shape" -->
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<dd>
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<p>Returns the shape of self.</p>
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<p>RETURN VALUE</p>
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<ul>
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<li>an Array of Integer</li>
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</ul></dd>
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<dt><h4><a name="label:15" id="label:15"><code>[*<var>slicer</var>]</code></a></h4></dt><!-- RDLabel: "[]" -->
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<dd>
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<p>Returns a subset.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>Same as those for NArray#[], NetCDFVar#[], etc.</li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>a Grid</li>
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</ul></dd>
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<dt><h4><a name="label:16" id="label:16"><code>cut(*<var>args</var>)</code></a></h4></dt><!-- RDLabel: "cut" -->
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<dd>
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<p>Similar to <a href="#label:15">[]</a>, but the subset is specified by physical coordinate.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>pattern 1: similar to those for <a href="#label:15">[]</a>, where the first
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argument specifies a subset for the first dimension.</li>
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<li>pattern 2: by a Hash, in which keys are axis names.</li>
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</ul>
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<p>EXAMPLES</p>
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<ul>
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<li><p>Pattern 1</p>
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<pre>gphys.cut(135.5,0..20.5,false)</pre></li>
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<li><p>Pattern 2</p>
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<pre>gphys.cut({'lon'=>135.5,'lat'=>0..20})</pre></li>
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>an Array : [a Grid, slicer], where slicer is an array
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to be used to make a subset of an corresponding varray
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(to be used in GPhys#cut).</li>
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</ul></dd>
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<dt><h4><a name="label:17" id="label:17"><code>cut_rank_conserving(*<var>args</var>)</code></a></h4></dt><!-- RDLabel: "cut_rank_conserving" -->
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<dd>
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<p>Similar to <a href="#label:16">cut</a>, but the rank is conserved by not eliminating
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any dimension (whose length could be one).</p></dd>
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<dt><h4><a name="label:18" id="label:18"><code>exclude(<var>dim_or_dimname</var>)</code></a></h4></dt><!-- RDLabel: "exclude" -->
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<dd>
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<p>Returns a Grid in which an axis is eliminated from self.</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>dim_or_dimname (String or Integer) to specify an axis.</li>
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172
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</ul>
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173
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<p>RETURN VALUE</p>
|
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<ul>
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175
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<li>a Grid</li>
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</ul></dd>
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<dt><h4><a name="label:19" id="label:19"><code>change_axis(<var>dim</var>, <var>axis</var>)</code></a></h4></dt><!-- RDLabel: "change_axis" -->
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178
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<dd>
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179
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<p>Replaces an axis. (Returns a new object)</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>dim_or_dimname (String or Integer) to specify an axis.</li>
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183
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<li>axis (Axis)</li>
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184
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</ul>
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185
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<p>RETURN VALUE</p>
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186
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<ul>
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187
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<li>a Grid</li>
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188
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</ul></dd>
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189
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<dt><h4><a name="label:20" id="label:20"><code>change_axis!(<var>dim_or_dimname</var>, <var>axis</var>)</code></a></h4></dt><!-- RDLabel: "change_axis!" -->
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<dd>
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191
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<p>Replaces an axis. (overwrites self)</p>
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192
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<p>ARGUMENTS</p>
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<ul>
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<li>dim_or_dimname (String or Integer) to specify an axis.</li>
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195
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<li>axis (Axis)</li>
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196
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</ul>
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<p>RETURN VALUE</p>
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<ul>
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<li>self</li>
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</ul></dd>
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<dt><h4><a name="label:21" id="label:21"><code>insert_axis(<var>dim_or_dimname</var>, <var>axis</var>)</code></a></h4></dt><!-- RDLabel: "insert_axis" -->
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<dd>
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203
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<p>Inserts an axis. (Returns a new object)</p>
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204
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<p>ARGUMENTS</p>
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<ul>
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206
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<li>dim_or_dimname (String or Integer) to specify an axis.</li>
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207
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<li>axis (Axis)</li>
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208
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</ul>
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209
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<p>RETURN VALUE</p>
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<ul>
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211
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<li>a Grid</li>
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212
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</ul></dd>
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213
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<dt><h4><a name="label:22" id="label:22"><code>insert_axis!(<var>dim_or_dimname</var>, <var>axis</var>)</code></a></h4></dt><!-- RDLabel: "insert_axis!" -->
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214
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<dd>
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215
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<p>Inserts an axis. (overwrites self)</p>
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216
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<p>ARGUMENTS</p>
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217
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<ul>
|
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218
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<li>dim_or_dimname (String or Integer) to specify an axis.</li>
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219
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<li>axis (Axis)</li>
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220
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</ul>
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221
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<p>RETURN VALUE</p>
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222
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<ul>
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223
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<li>self</li>
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224
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</ul></dd>
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225
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<dt><h4><a name="label:23" id="label:23"><code>transpose( *<var>dims</var> )</code></a></h4></dt><!-- RDLabel: "transpose" -->
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226
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<dd>
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227
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<p>Transpose.</p>
|
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228
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<p>ARGUMENTS</p>
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229
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<ul>
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230
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<li>dims (integers) : for example, [1,0] to transpose a 2D object.
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231
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For 3D objects, [1,0,2], [2,1,0], etc.etc.</li>
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232
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</ul>
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233
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<p>RETURN VALUE</p>
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234
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<ul>
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235
|
+
<li>a Grid</li>
|
|
236
|
+
</ul></dd>
|
|
237
|
+
</dl>
|
|
238
|
+
|
|
239
|
+
</body>
|
|
240
|
+
</html>
|
data/doc/index.html
ADDED
|
@@ -0,0 +1,125 @@
|
|
|
1
|
+
<?xml version="1.0" ?>
|
|
2
|
+
<!DOCTYPE html
|
|
3
|
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PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
|
|
4
|
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"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
5
|
+
<html xmlns="http://www.w3.org/1999/xhtml">
|
|
6
|
+
<head>
|
|
7
|
+
<title>index.rd</title>
|
|
8
|
+
</head>
|
|
9
|
+
<body>
|
|
10
|
+
<h1><a name="label:0" id="label:0">Reference manuals of the GPhys library</a></h1><!-- RDLabel: "Reference manuals of the GPhys library" -->
|
|
11
|
+
<h2><a name="label:1" id="label:1">Index</a></h2><!-- RDLabel: "Index" -->
|
|
12
|
+
<ul>
|
|
13
|
+
<li><a href="#label:2">Commands to be installed</a></li>
|
|
14
|
+
<li><a href="#label:3">GPhys and its components</a></li>
|
|
15
|
+
<li><a href="#label:8">Applications distributed with GPhys</a></li>
|
|
16
|
+
</ul>
|
|
17
|
+
<p>---------------------------------------------------------------------</p>
|
|
18
|
+
<h2><a name="label:2" id="label:2">Commands to be installed</a></h2><!-- RDLabel: "Commands to be installed" -->
|
|
19
|
+
<ul>
|
|
20
|
+
<li><a href="grads2nc_with_gphys.html">grads2nc_with_gphys</a> file converter
|
|
21
|
+
from the GrADS format to NetCDF</li>
|
|
22
|
+
<li><a href="gdir_server.html">gdir_server</a> A dRuby server with a GDir
|
|
23
|
+
at the front end.</li>
|
|
24
|
+
<li><a href="gdir_client.html">gdir_client</a> : A client of gdir_server
|
|
25
|
+
using irb with <a href="gdir_connect_ftp-like.html">gdir_connect_ftp-like</a></li>
|
|
26
|
+
<li><a href="gpcat.html">gpcat</a> Read a variable in multiple NetCDF files, concatenate and write them to a single netcdf file. </li>
|
|
27
|
+
<li><a href="gpcut.html">gpcut</a> extract, slicing and thinning a GPhys variable</li>
|
|
28
|
+
<li><a href="gplist.html">gplist</a> print out variables and their dimnsions</li>
|
|
29
|
+
<li><a href="gpmath.html">gpmath</a> operate a math function to a GPhys variable</li>
|
|
30
|
+
<li><a href="gpmaxmin.html">gpmaxmin</a> prints maximum and minimum values of a GPhys variable</li>
|
|
31
|
+
<li><a href="gpprint.html">gpprint</a> prints the values of a GPhys variable </li>
|
|
32
|
+
<li><a href="gpview.html">gpview</a> visualizer (2D, 1D)</li>
|
|
33
|
+
</ul>
|
|
34
|
+
<h2><a name="label:3" id="label:3">GPhys and its components</a></h2><!-- RDLabel: "GPhys and its components" -->
|
|
35
|
+
<h4><a name="label:4" id="label:4">GPhys Core Part</a></h4><!-- RDLabel: "GPhys Core Part" -->
|
|
36
|
+
<p>A GPhys object has the following structure:</p>
|
|
37
|
+
<pre>-
|
|
38
|
+
has 1
|
|
39
|
+
a GPhys --------- array-like data (VArray)
|
|
40
|
+
| has 1
|
|
41
|
+
--------- grid (Grid)
|
|
42
|
+
| has rank
|
|
43
|
+
------------ axis (Axis)
|
|
44
|
+
| has 1
|
|
45
|
+
-------- 1D position data (VArray)
|
|
46
|
+
| has 0..
|
|
47
|
+
-------- ancillary data (VArray)</pre>
|
|
48
|
+
<p>That is, a GPhys object consists of data (whose class is VArray) and
|
|
49
|
+
grid (whose class is Grid). The latter consists of axes (whose class is
|
|
50
|
+
Axis), which consist of VArray objects (such as ones that have
|
|
51
|
+
1-dimensional grid-point position data). To use GPhys, it is
|
|
52
|
+
useful to know these four classes.</p>
|
|
53
|
+
<ul>
|
|
54
|
+
<li><a href="varray.html">class NumRu::VArray</a> :
|
|
55
|
+
Virtual Array class, which holds multi-dimensional data of various
|
|
56
|
+
format and media (on memory or in file).
|
|
57
|
+
<ul>
|
|
58
|
+
<li><a href="varraycomposite.html">class NumRu::VArrayComposite</a> :
|
|
59
|
+
Subclass of VArray to bundle multiple VArrays by "tiling".</li>
|
|
60
|
+
</ul></li>
|
|
61
|
+
<li><a href="axis.html">class NumRu::Axis</a> : A class to represent a discretized physical coordinate.</li>
|
|
62
|
+
<li><a href="grid.html">class NumRu::Grid</a> : A class to represent discretized grids of physical quantities.</li>
|
|
63
|
+
<li><a href="gphys.html">class NumRu::GPhys</a> : Core part of the GPhys class</li>
|
|
64
|
+
</ul>
|
|
65
|
+
<h4><a name="label:5" id="label:5">Miscellaneous Dependent Libraries Distributed with GPhys</a></h4><!-- RDLabel: "Miscellaneous Dependent Libraries Distributed with GPhys" -->
|
|
66
|
+
<ul>
|
|
67
|
+
<li><a href="unumeric.html">class NumRu::UNumeric</a> :
|
|
68
|
+
Numeric with units (combination of Numeric and Units)</li>
|
|
69
|
+
<li><a href="derivative/index.html">module NumRu::Derivative</a> :
|
|
70
|
+
Module functions to make differentiation using NArray.</li>
|
|
71
|
+
<li><!-- Reference, RDLabel "class NumRu::SubsetMapping" doesn't exist --><em class="label-not-found">class NumRu::SubsetMapping</em><!-- Reference end --> : Sorry, yet to be written.</li>
|
|
72
|
+
<li><a href="attribute.html">class NumRu::Attribute</a> : A Hash class compatible with NetCDF attributes.</li>
|
|
73
|
+
<li><a href="coordmapping.html">class NumRu::CoordMapping</a> :
|
|
74
|
+
<ul>
|
|
75
|
+
<li><a href="coordmapping.html">class NumRu::LinearCoordMapping</a> :</li>
|
|
76
|
+
</ul></li>
|
|
77
|
+
<li><a href="grads_gridded.html">class NumRu::GrADS_Gridded</a> :
|
|
78
|
+
Class to handle GrADS data.</li>
|
|
79
|
+
<li><a href="grib.html">class NumRu::Grib</a> :
|
|
80
|
+
a class for Grib datasets.</li>
|
|
81
|
+
<li><a href="htdir.html">class NumRu::GDir::HtDir</a> :
|
|
82
|
+
A class to treat the URL of a "directory" as a directory (used in
|
|
83
|
+
GDir).</li>
|
|
84
|
+
</ul>
|
|
85
|
+
<h4><a name="label:6" id="label:6">External File Handlers of GPhys</a></h4><!-- RDLabel: "External File Handlers of GPhys" -->
|
|
86
|
+
<ul>
|
|
87
|
+
<li><a href="gphys_io.html">module NumRu::GPhys::IO</a> :
|
|
88
|
+
GPhys file IO module for all file types.</li>
|
|
89
|
+
<li><a href="gphys_netcdf_io.html">module NumRu::GPhys::NetCDF_IO</a> :
|
|
90
|
+
NetCDF data input/output.</li>
|
|
91
|
+
<li><a href="netcdf_convention.html">module NumRu::NetCDF_Conventions,
|
|
92
|
+
module NumRu::NetCDF_Convention_Users_Guide etc.
|
|
93
|
+
</a> :
|
|
94
|
+
NetCDF convention handler.</li>
|
|
95
|
+
<li><a href="gphys_grads_io.html">module NumRu::GPhys::GrADS_IO</a> :
|
|
96
|
+
GrADS data input/output.</li>
|
|
97
|
+
<li><a href="gphys_grib_io.html">module NumRu::GPhys::Grib_IO</a> :
|
|
98
|
+
Grib data IO.</li>
|
|
99
|
+
</ul>
|
|
100
|
+
<h4><a name="label:7" id="label:7">Miscellaneous Extensions of GPhys</a></h4><!-- RDLabel: "Miscellaneous Extensions of GPhys" -->
|
|
101
|
+
<ul>
|
|
102
|
+
<li><a href="coordtransform.html">coordinate transformation</a> :
|
|
103
|
+
Extension of the NumRu::GPhys class for coordinate transformation.</li>
|
|
104
|
+
<li><a href="gphys_fft.html">FFT</a> :
|
|
105
|
+
Extension of the NumRu::GPhys class
|
|
106
|
+
for the Fast Fourier Transformation and its applications</li>
|
|
107
|
+
<li><a href="derivative/index.html">module NumRu::GPhys::Derivative</a> :
|
|
108
|
+
Module functions to make differentiation of GPhys objects.</li>
|
|
109
|
+
<li><a href="ep_flux/index.html">module NumRu::GPhys::EP_Flux</a> :
|
|
110
|
+
Module functions to derive the Eliassen-Palm flux and related
|
|
111
|
+
quantities (such as the residual circulation and its mass stream function).</li>
|
|
112
|
+
</ul>
|
|
113
|
+
<h2><a name="label:8" id="label:8">Applications distributed with GPhys</a></h2><!-- RDLabel: "Applications distributed with GPhys" -->
|
|
114
|
+
<p>To use the following, you have to <var>require</var> explicitly. </p>
|
|
115
|
+
<ul>
|
|
116
|
+
<li><a href="ggraph.html">module NumRu::GGraph</a> :
|
|
117
|
+
A graphic library using GPhys.</li>
|
|
118
|
+
<li><a href="gdir.html">class NumRu::GDir</a> :
|
|
119
|
+
A class to represent diretories and data files for GPhys.</li>
|
|
120
|
+
<li><a href="gdir_connect_ftp-like.html">irb start-up program gdir_connect_ftp-like</a> A library to be required
|
|
121
|
+
to interactively connect with a <a href="gdir_server.html">gdir_server</a>.</li>
|
|
122
|
+
</ul>
|
|
123
|
+
|
|
124
|
+
</body>
|
|
125
|
+
</html>
|
data/doc/index.rd
ADDED
|
@@ -0,0 +1,121 @@
|
|
|
1
|
+
=begin
|
|
2
|
+
|
|
3
|
+
=Reference manuals of the GPhys library
|
|
4
|
+
|
|
5
|
+
==Index
|
|
6
|
+
* ((<Commands to be installed>))
|
|
7
|
+
* ((<GPhys and its components>))
|
|
8
|
+
* ((<Applications distributed with GPhys>))
|
|
9
|
+
---------------------------------------------------------------------
|
|
10
|
+
|
|
11
|
+
==Commands to be installed
|
|
12
|
+
|
|
13
|
+
* ((<grads2nc_with_gphys|URL:grads2nc_with_gphys.html>)) file converter
|
|
14
|
+
from the GrADS format to NetCDF
|
|
15
|
+
* ((<gdir_server|URL:gdir_server.html>)) A dRuby server with a GDir
|
|
16
|
+
at the front end.
|
|
17
|
+
* ((<gdir_client|URL:gdir_client.html>)) : A client of gdir_server
|
|
18
|
+
using irb with ((<gdir_connect_ftp-like|URL:gdir_connect_ftp-like.html>))
|
|
19
|
+
|
|
20
|
+
* ((<gpcat|URL:gpcat.html>)) Read a variable in multiple NetCDF files, concatenate and write them to a single netcdf file.
|
|
21
|
+
* ((<gpcut|URL:gpcut.html>)) extract, slicing and thinning a GPhys variable
|
|
22
|
+
* ((<gplist|URL:gplist.html>)) print out variables and their dimnsions
|
|
23
|
+
* ((<gpmath|URL:gpmath.html>)) operate a math function to a GPhys variable
|
|
24
|
+
* ((<gpmaxmin|URL:gpmaxmin.html>)) prints maximum and minimum values of a GPhys variable
|
|
25
|
+
* ((<gpprint|URL:gpprint.html>)) prints the values of a GPhys variable
|
|
26
|
+
* ((<gpview|URL:gpview.html>)) visualizer (2D, 1D)
|
|
27
|
+
|
|
28
|
+
==GPhys and its components
|
|
29
|
+
|
|
30
|
+
====GPhys Core Part
|
|
31
|
+
|
|
32
|
+
A GPhys object has the following structure:
|
|
33
|
+
|
|
34
|
+
-
|
|
35
|
+
has 1
|
|
36
|
+
a GPhys --------- array-like data (VArray)
|
|
37
|
+
| has 1
|
|
38
|
+
--------- grid (Grid)
|
|
39
|
+
| has rank
|
|
40
|
+
------------ axis (Axis)
|
|
41
|
+
| has 1
|
|
42
|
+
-------- 1D position data (VArray)
|
|
43
|
+
| has 0..
|
|
44
|
+
-------- ancillary data (VArray)
|
|
45
|
+
|
|
46
|
+
That is, a GPhys object consists of data (whose class is VArray) and
|
|
47
|
+
grid (whose class is Grid). The latter consists of axes (whose class is
|
|
48
|
+
Axis), which consist of VArray objects (such as ones that have
|
|
49
|
+
1-dimensional grid-point position data). To use GPhys, it is
|
|
50
|
+
useful to know these four classes.
|
|
51
|
+
|
|
52
|
+
* ((<class NumRu::VArray|URL:varray.html>)) :
|
|
53
|
+
Virtual Array class, which holds multi-dimensional data of various
|
|
54
|
+
format and media (on memory or in file).
|
|
55
|
+
|
|
56
|
+
* ((<class NumRu::VArrayComposite|URL:varraycomposite.html>)) :
|
|
57
|
+
Subclass of VArray to bundle multiple VArrays by "tiling".
|
|
58
|
+
|
|
59
|
+
* ((<class NumRu::Axis|URL:axis.html>)) : A class to represent a discretized physical coordinate.
|
|
60
|
+
* ((<class NumRu::Grid|URL:grid.html>)) : A class to represent discretized grids of physical quantities.
|
|
61
|
+
* ((<class NumRu::GPhys|URL:gphys.html>)) : Core part of the GPhys class
|
|
62
|
+
|
|
63
|
+
====Miscellaneous Dependent Libraries Distributed with GPhys
|
|
64
|
+
|
|
65
|
+
* ((<class NumRu::UNumeric|URL:unumeric.html>)) :
|
|
66
|
+
Numeric with units (combination of Numeric and Units)
|
|
67
|
+
* ((<module NumRu::Derivative|URL:derivative/index.html>)) :
|
|
68
|
+
Module functions to make differentiation using NArray.
|
|
69
|
+
* ((<class NumRu::SubsetMapping>)) : Sorry, yet to be written.
|
|
70
|
+
* ((<class NumRu::Attribute|URL:attribute.html>)) : A Hash class compatible with NetCDF attributes.
|
|
71
|
+
* ((<class NumRu::CoordMapping|URL:coordmapping.html>)) :
|
|
72
|
+
* ((<class NumRu::LinearCoordMapping|URL:coordmapping.html>)) :
|
|
73
|
+
* ((<class NumRu::GrADS_Gridded|URL:grads_gridded.html>)) :
|
|
74
|
+
Class to handle GrADS data.
|
|
75
|
+
* ((<class NumRu::Grib|URL:grib.html>)) :
|
|
76
|
+
a class for Grib datasets.
|
|
77
|
+
* ((<class NumRu::GDir::HtDir|URL:htdir.html>)) :
|
|
78
|
+
A class to treat the URL of a "directory" as a directory (used in
|
|
79
|
+
GDir).
|
|
80
|
+
|
|
81
|
+
====External File Handlers of GPhys
|
|
82
|
+
|
|
83
|
+
* ((<module NumRu::GPhys::IO|URL:gphys_io.html>)) :
|
|
84
|
+
GPhys file IO module for all file types.
|
|
85
|
+
* ((<module NumRu::GPhys::NetCDF_IO|URL:gphys_netcdf_io.html>)) :
|
|
86
|
+
NetCDF data input/output.
|
|
87
|
+
* ((<module NumRu::NetCDF_Conventions,
|
|
88
|
+
module NumRu::NetCDF_Convention_Users_Guide etc.
|
|
89
|
+
|URL:netcdf_convention.html>)) :
|
|
90
|
+
NetCDF convention handler.
|
|
91
|
+
* ((<module NumRu::GPhys::GrADS_IO|URL:gphys_grads_io.html>)) :
|
|
92
|
+
GrADS data input/output.
|
|
93
|
+
* ((<module NumRu::GPhys::Grib_IO|URL:gphys_grib_io.html>)) :
|
|
94
|
+
Grib data IO.
|
|
95
|
+
|
|
96
|
+
====Miscellaneous Extensions of GPhys
|
|
97
|
+
|
|
98
|
+
* ((<coordinate transformation|URL:coordtransform.html>)) :
|
|
99
|
+
Extension of the NumRu::GPhys class for coordinate transformation.
|
|
100
|
+
* ((<FFT|URL:gphys_fft.html>)) :
|
|
101
|
+
Extension of the NumRu::GPhys class
|
|
102
|
+
for the Fast Fourier Transformation and its applications
|
|
103
|
+
* ((<module NumRu::GPhys::Derivative|URL:derivative/index.html>)) :
|
|
104
|
+
Module functions to make differentiation of GPhys objects.
|
|
105
|
+
* ((<module NumRu::GPhys::EP_Flux|URL:ep_flux/index.html>)) :
|
|
106
|
+
Module functions to derive the Eliassen-Palm flux and related
|
|
107
|
+
quantities (such as the residual circulation and its mass stream function).
|
|
108
|
+
|
|
109
|
+
==Applications distributed with GPhys
|
|
110
|
+
|
|
111
|
+
To use the following, you have to ((|require|)) explicitly.
|
|
112
|
+
|
|
113
|
+
* ((<module NumRu::GGraph|URL:ggraph.html>)) :
|
|
114
|
+
A graphic library using GPhys.
|
|
115
|
+
|
|
116
|
+
* ((<class NumRu::GDir|URL:gdir.html>)) :
|
|
117
|
+
A class to represent diretories and data files for GPhys.
|
|
118
|
+
|
|
119
|
+
* ((<irb start-up program gdir_connect_ftp-like|URL:gdir_connect_ftp-like.html>)) A library to be required
|
|
120
|
+
to interactively connect with a ((<gdir_server|URL:gdir_server.html>)).
|
|
121
|
+
=end
|
|
@@ -0,0 +1,136 @@
|
|
|
1
|
+
<?xml version="1.0" ?>
|
|
2
|
+
<!DOCTYPE html
|
|
3
|
+
PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
|
|
4
|
+
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
5
|
+
<html xmlns="http://www.w3.org/1999/xhtml">
|
|
6
|
+
<head>
|
|
7
|
+
<title>../lib/numru/gphys/netcdf_convention.rb</title>
|
|
8
|
+
</head>
|
|
9
|
+
<body>
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10
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<h2><a name="label:0" id="label:0">INDEX</a></h2><!-- RDLabel: "INDEX" -->
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11
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+
<ul>
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12
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+
<li><a href="#label:1">module NumRu::NetCDF_Conventions</a></li>
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13
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+
<li><a href="#label:6">module NumRu::NetCDF_Convention_Users_Guide</a>
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14
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+
<ul>
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15
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+
<li><a href="#label:15">module NumRu::NetCDF_Convention_Users_Guide::Attribute_Mixin</a></li>
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16
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+
<li><a href="#label:18">module NumRu::NetCDF_Convention_Users_Guide::VArray_Mixin</a></li>
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17
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+
</ul></li>
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18
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+
<li><a href="#label:20">module NumRu::NetCDF_Convention_Wind_Profiler</a></li>
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19
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+
</ul>
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20
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<h1><a name="label:1" id="label:1">module NumRu::NetCDF_Conventions</a></h1><!-- RDLabel: "module NumRu::NetCDF_Conventions" -->
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21
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+
<p>NetCDF_Conventions is the general handler of NetCDF conventions for the
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22
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+
GPhys library.</p>
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23
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<h2><a name="label:2" id="label:2">Module Functions</a></h2><!-- RDLabel: "Module Functions" -->
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24
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<dl>
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25
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<dt><h4><a name="label:3" id="label:3"><code>find( <var>netcdf</var> )</code></a></h4></dt><!-- RDLabel: "find" -->
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26
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<dd>
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<p>Figures out what NetCDF convention a netcdf file is following.</p>
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28
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<p>ARGUMENTS</p>
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29
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<ul>
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30
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<li><var>netcdf</var> (NetCDF): the file</li>
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31
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+
</ul>
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32
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<p>RETURN VALUE</p>
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33
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+
<ul>
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34
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+
<li>a Module (NumRu::NetCDF_Convention_Users_Guide etc.)</li>
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35
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+
</ul>
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36
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+
<p>REMARK</p>
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37
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+
<ul>
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+
<li>The convention is figured out from the 'Conventions' global attribute.
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39
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+
You can instead fix the convention by using <a href="#label:4">fix_to</a>.</li>
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40
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+
</ul></dd>
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41
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+
<dt><h4><a name="label:4" id="label:4"><code>fix_to( <var>convention</var> )</code></a></h4></dt><!-- RDLabel: "fix_to" -->
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42
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+
<dd>
|
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43
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+
<p>Fix the convention to be returned by <a href="#label:3">find</a> regardless the value
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44
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+
of the 'Conventions' attribute.</p>
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45
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+
<p>ARGUMENTS</p>
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46
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+
<ul>
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47
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+
<li><var>convention</var> (Module): NumRu::NetCDF_Convention_Users_Guide etc.</li>
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48
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+
</ul>
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49
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+
<p>RETURN VALUE</p>
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50
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+
<ul>
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51
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+
<li>convention</li>
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52
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+
</ul></dd>
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53
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+
<dt><h4><a name="label:5" id="label:5"><code>add_history(<var>netcdf</var>, <var>str</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "add_history" -->
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54
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+
<dd>
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55
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+
<p>Adds a line to the 'history' global convention of <var>netcdf</var>.
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|
56
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+
The line consists of date, time, user name, and <var>str</var>
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57
|
+
if present (e.g., '2004-03-02 17:52:25 JST horinout> '+str).</p>
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|
58
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+
<p>ARGUMENTS</p>
|
|
59
|
+
<ul>
|
|
60
|
+
<li><var>netcdf</var> (NetCDF): the file in which the history is updated</li>
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|
61
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+
<li><var>str</var> (nil or String): if present, added to the end of the line.</li>
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62
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+
</ul></dd>
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|
63
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+
</dl>
|
|
64
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+
<h1><a name="label:6" id="label:6">module NumRu::NetCDF_Convention_Users_Guide</a></h1><!-- RDLabel: "module NumRu::NetCDF_Convention_Users_Guide" -->
|
|
65
|
+
<p>The NetCDF Users Guide Convention
|
|
66
|
+
(http://www.unidata.ucar.edu/packages/netcdf/docs.html).</p>
|
|
67
|
+
<h2><a name="label:7" id="label:7">Constants</a></h2><!-- RDLabel: "Constants" -->
|
|
68
|
+
<dl>
|
|
69
|
+
<dt><h4><a name="label:8" id="label:8"><code>Attribute_Mixin</code></a><!-- RDLabel: "Attribute_Mixin" -->
|
|
70
|
+
</dl>
|
|
71
|
+
<p>See below: <a href="#label:15">module NumRu::NetCDF_Convention_Users_Guide::Attribute_Mixin</a>.</p>
|
|
72
|
+
<dl>
|
|
73
|
+
<dt><h4><a name="label:9" id="label:9"><code>VArray_Mixin</code></a><!-- RDLabel: "VArray_Mixin" -->
|
|
74
|
+
</dl>
|
|
75
|
+
<p>See below: <a href="#label:18">module NumRu::NetCDF_Convention_Users_Guide::VArray_Mixin</a>.</p>
|
|
76
|
+
<h2><a name="label:10" id="label:10">Module Functions</a></h2><!-- RDLabel: "Module Functions" -->
|
|
77
|
+
<dl>
|
|
78
|
+
<dt><h4><a name="label:11" id="label:11"><code>to_s</code></a></h4></dt><!-- RDLabel: "to_s" -->
|
|
79
|
+
<dd>
|
|
80
|
+
<p>Returns a string to be used as representing the convention.
|
|
81
|
+
The Users Guide Convention does not have one, so a string
|
|
82
|
+
was tentatively assigned by Horinouchi.</p></dd>
|
|
83
|
+
<dt><h4><a name="label:12" id="label:12"><code>coord_var_names(<var>ncvar</var>)</code></a></h4></dt><!-- RDLabel: "coord_var_names" -->
|
|
84
|
+
<dd>
|
|
85
|
+
<p>Returns the names of coordinate variables for all the dimensions
|
|
86
|
+
of <var>ncvar</var>.</p>
|
|
87
|
+
<p>ARGUMENTS</p>
|
|
88
|
+
<ul>
|
|
89
|
+
<li><var>ncvar</var> (NetCDFVar)</li>
|
|
90
|
+
</ul>
|
|
91
|
+
<p>RETURN VALUE</p>
|
|
92
|
+
<ul>
|
|
93
|
+
<li>Array of strings, whose length is the rank of <var>ncvar</var>.</li>
|
|
94
|
+
</ul></dd>
|
|
95
|
+
<dt><h4><a name="label:13" id="label:13"><code>cell_bounds?(<var>coord_var</var>)</code></a></h4></dt><!-- RDLabel: "cell_bounds?" -->
|
|
96
|
+
<dd>
|
|
97
|
+
<p>Document to be written. (returns false&nil in this convention.)
|
|
98
|
+
Might be reorganized in future when the gtool4 convention is supported.</p></dd>
|
|
99
|
+
<dt><h4><a name="label:14" id="label:14"><code>cell_center?(<var>coord_var</var>)</code></a></h4></dt><!-- RDLabel: "cell_center?" -->
|
|
100
|
+
<dd>
|
|
101
|
+
<p>Document to be written. (returns false&nil in this convention.)
|
|
102
|
+
Might be reorganized in future when the gtool4 convention is supported.</p></dd>
|
|
103
|
+
</dl>
|
|
104
|
+
<p>--------------------------------------------------</p>
|
|
105
|
+
<h2><a name="label:15" id="label:15">module NumRu::NetCDF_Convention_Users_Guide::Attribute_Mixin</a></h2><!-- RDLabel: "module NumRu::NetCDF_Convention_Users_Guide::Attribute_Mixin" -->
|
|
106
|
+
<p>The module to be mixed in NumRu::AttributeNetCDF.</p>
|
|
107
|
+
<h3><a name="label:16" id="label:16">Instance Methods </a></h3><!-- RDLabel: "Instance Methods " -->
|
|
108
|
+
<p>Methods below will become sigular methods of NumRu::AttributeNetCDF.</p>
|
|
109
|
+
<dl>
|
|
110
|
+
<dt><h4><a name="label:17" id="label:17"><code>copy(<var>to</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "copy" -->
|
|
111
|
+
<dd>
|
|
112
|
+
<p>Same as super (the one overridden by this method),
|
|
113
|
+
but edits some standard attributes if to is nil (copy onto memory)):</p>
|
|
114
|
+
<ul>
|
|
115
|
+
<li>scale_factor, add_offset: removed, since data copying includes
|
|
116
|
+
"unpaking" by interpreting them</li>
|
|
117
|
+
<li>valid_*, missing_value: unpacked if packed.</li>
|
|
118
|
+
<li>_FillValue, FORTRAN_format, C_format: eliminated</li>
|
|
119
|
+
</ul></dd>
|
|
120
|
+
</dl>
|
|
121
|
+
<p>---------------------------------------------------</p>
|
|
122
|
+
<h2><a name="label:18" id="label:18">module NumRu::NetCDF_Convention_Users_Guide::VArray_Mixin</a></h2><!-- RDLabel: "module NumRu::NetCDF_Convention_Users_Guide::VArray_Mixin" -->
|
|
123
|
+
<p>The module to be mixed in NumRu::VArrayNetCDF.</p>
|
|
124
|
+
<h3><a name="label:19" id="label:19">Instance Methods</a></h3><!-- RDLabel: "Instance Methods" -->
|
|
125
|
+
<p>Currently none, meaning is that no modification is made
|
|
126
|
+
in VArrayNetCDF.</p>
|
|
127
|
+
<p>---------------------------------------------------------------------</p>
|
|
128
|
+
<h1><a name="label:20" id="label:20">module NumRu::NetCDF_Convention_Wind_Profiler</a></h1><!-- RDLabel: "module NumRu::NetCDF_Convention_Wind_Profiler" -->
|
|
129
|
+
<p>The Wind Profiler convention
|
|
130
|
+
(http://www.kurasc.kyoto-u.ac.jp/radar-group/wind_profiler_conventions/).</p>
|
|
131
|
+
<p>Inherits NetCDF_Convention_Users_Guide and makes appropriate redefinitions.
|
|
132
|
+
See <a href="#label:6">module NumRu::NetCDF_Convention_Users_Guide</a> for the description
|
|
133
|
+
of constants and module functions.</p>
|
|
134
|
+
|
|
135
|
+
</body>
|
|
136
|
+
</html>
|