gentooboontoo-gphys 0.6.1.3 → 1.3.1.1

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Files changed (111) hide show
  1. checksums.yaml +4 -4
  2. data/ChangeLog +5631 -464
  3. data/LICENSE.txt +34 -0
  4. data/README +23 -25
  5. data/bin/gdir_client +25 -7
  6. data/bin/gdir_server +19 -13
  7. data/bin/gpaop +41 -28
  8. data/bin/gpcat +19 -11
  9. data/bin/gpcut +20 -11
  10. data/bin/gpedit +37 -1
  11. data/bin/gplist +5 -4
  12. data/bin/gpmath +21 -14
  13. data/bin/gpmaxmin +9 -7
  14. data/bin/gpprint +15 -11
  15. data/bin/gpvect +217 -96
  16. data/bin/gpview +278 -123
  17. data/bin/grads2nc_with_gphys +11 -6
  18. data/doc/attribute.html +1 -1
  19. data/doc/axis.html +85 -66
  20. data/doc/coordmapping.html +22 -22
  21. data/doc/dclext.html +709 -0
  22. data/doc/derivative/gphys-derivative.html +33 -13
  23. data/doc/derivative/numru-derivative.html +60 -31
  24. data/doc/gdir.html +76 -76
  25. data/doc/gdir_server.html +28 -16
  26. data/doc/ggraph.html +493 -706
  27. data/doc/gpcat.html +28 -11
  28. data/doc/gpcut.html +26 -11
  29. data/doc/gphys.html +195 -71
  30. data/doc/gphys_fft.html +162 -21
  31. data/doc/gphys_grads_io.html +9 -9
  32. data/doc/gphys_grib_io.html +7 -7
  33. data/doc/gphys_io.html +118 -31
  34. data/doc/gphys_io_common.html +1 -1
  35. data/doc/gphys_netcdf_io.html +14 -14
  36. data/doc/gplist.html +6 -5
  37. data/doc/gpmath.html +32 -14
  38. data/doc/gpmaxmin.html +9 -7
  39. data/doc/gpprint.html +14 -11
  40. data/doc/gpview.html +254 -146
  41. data/doc/grads2nc_with_gphys.html +6 -8
  42. data/doc/grads_gridded.html +77 -77
  43. data/doc/grib.html +102 -59
  44. data/doc/grid.html +45 -61
  45. data/doc/index.html +51 -41
  46. data/doc/index.rd +47 -36
  47. data/doc/netcdf_convention.html +39 -39
  48. data/doc/unumeric.html +79 -30
  49. data/doc/update +2 -1
  50. data/doc/varray.html +62 -56
  51. data/doc/varraycomposite.html +3 -3
  52. data/ext/ext_coord.c +209 -0
  53. data/ext/ext_init.c +7 -0
  54. data/ext/extconf.rb +41 -0
  55. data/ext/interpo.c +536 -0
  56. data/ext/multibitIO.c +567 -0
  57. data/lib/numru/dcl_mouse.rb +71 -0
  58. data/lib/numru/dclext.rb +2749 -0
  59. data/lib/numru/derivative.rb +124 -31
  60. data/lib/numru/ganalysis.rb +7 -0
  61. data/lib/numru/ganalysis/covariance.rb +154 -0
  62. data/lib/numru/ganalysis/eof.rb +302 -0
  63. data/lib/numru/ganalysis/histogram.rb +337 -0
  64. data/lib/numru/ganalysis/met.rb +872 -0
  65. data/lib/numru/ganalysis/planet.rb +392 -0
  66. data/lib/numru/ggraph.rb +1709 -2498
  67. data/lib/numru/gphys.rb +7 -1
  68. data/lib/numru/gphys/assoccoords.rb +384 -0
  69. data/lib/numru/gphys/attribute.rb +10 -11
  70. data/lib/numru/gphys/axis.rb +97 -25
  71. data/lib/numru/gphys/coordmapping.rb +2 -2
  72. data/lib/numru/gphys/derivative.rb +117 -46
  73. data/lib/numru/gphys/gphys.rb +595 -31
  74. data/lib/numru/gphys/gphys_fft.rb +365 -13
  75. data/lib/numru/gphys/gphys_grads_io.rb +6 -5
  76. data/lib/numru/gphys/gphys_grib_io.rb +6 -6
  77. data/lib/numru/gphys/gphys_gtool3_io.rb +162 -0
  78. data/lib/numru/gphys/gphys_hdfeos5_io.rb +672 -0
  79. data/lib/numru/gphys/gphys_io.rb +260 -20
  80. data/lib/numru/gphys/gphys_io_common.rb +1 -1
  81. data/lib/numru/gphys/gphys_netcdf_io.rb +111 -40
  82. data/lib/numru/gphys/gphys_nusdas_io.rb +64 -7
  83. data/lib/numru/gphys/grads_gridded.rb +158 -57
  84. data/lib/numru/gphys/grib.rb +205 -157
  85. data/lib/numru/gphys/grib_params.rb +196 -1
  86. data/lib/numru/gphys/grid.rb +214 -83
  87. data/lib/numru/gphys/gtool3.rb +771 -0
  88. data/lib/numru/gphys/interpolate.rb +992 -0
  89. data/lib/numru/gphys/mdstorage.rb +145 -0
  90. data/lib/numru/gphys/narray_ext.rb +34 -0
  91. data/lib/numru/gphys/netcdf_convention.rb +44 -2
  92. data/lib/numru/gphys/subsetmapping.rb +1 -1
  93. data/lib/numru/gphys/unumeric.rb +101 -8
  94. data/lib/numru/gphys/varray.rb +66 -20
  95. data/lib/numru/gphys/varraycomposite.rb +107 -29
  96. data/lib/numru/gphys/varraygrib.rb +70 -8
  97. data/lib/numru/gphys/varraygtool3.rb +226 -0
  98. data/lib/numru/gphys/varrayhdfeos5.rb +451 -0
  99. data/lib/numru/gphys/varraynetcdf.rb +13 -5
  100. data/lib/numru/gphys/version.rb +3 -0
  101. data/sample/druby_cli1.rb +2 -0
  102. data/sample/druby_cli2.rb +0 -6
  103. data/sample/druby_serv2.rb +0 -13
  104. data/sample/ncep_theta_coord.rb +79 -0
  105. data/test/eof_slp.rb +28 -0
  106. data/test/mltbit.dat +0 -0
  107. data/test/test_multibitIO.rb +19 -0
  108. data/testdata/assoc_crds.nc +0 -0
  109. metadata +79 -8
  110. data/lib/numru/dclext_datetime_ax.rb +0 -220
  111. data/lib/numru/vizshot.rb +0 -697
data/doc/derivative/gphys-derivative.html CHANGED
@@ -7,25 +7,29 @@
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  <title>../../lib/numru/gphys/derivative.rb</title>
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  </head>
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  <body>
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- <h1><a name="label:0" id="label:0">module NumRu::GPhys::Derivative in derivative.rb</a></h1><!-- RDLabel: "module NumRu::GPhys::Derivative in derivative.rb" -->
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- <h2><a name="label:1" id="label:1">Index</a></h2><!-- RDLabel: "Index" -->
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+ <h1><a name="label-0" id="label-0">module NumRu::GPhys::Derivative in derivative.rb</a></h1><!-- RDLabel: "module NumRu::GPhys::Derivative in derivative.rb" -->
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+ <h2><a name="label-1" id="label-1">Index</a></h2><!-- RDLabel: "Index" -->
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  <ul>
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- <li><a href="#label:2">module NumRu::GPhys::Derivative</a>
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+ <li><a href="#label-2">module NumRu::GPhys::Derivative</a>
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  <ul>
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- <li><a href="#label:3">threepoint_O2nd_deriv</a>
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+ <li><a href="#label-3">threepoint_O2nd_deriv</a>
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  <ul>
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  <li>First derivative (2nd Order difference use three point.)</li>
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  </ul></li>
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- <li><a href="#label:4">cderiv</a>
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+ <li><a href="#label-4">cderiv</a>
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  <ul>
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  <li>First derivative (using center difference method)</li>
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  </ul></li>
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+ <li><!-- Reference, RDLabel "deriv2d" doesn't exist --><em class="label-not-found">deriv2d</em><!-- Reference end -->
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+ <ul>
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+ <li>2nd derivative</li>
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+ </ul></li>
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  </ul></li>
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  </ul>
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- <h1><a name="label:2" id="label:2">module NumRu::GPhys::Derivative</a></h1><!-- RDLabel: "module NumRu::GPhys::Derivative" -->
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+ <h1><a name="label-2" id="label-2">module NumRu::GPhys::Derivative</a></h1><!-- RDLabel: "module NumRu::GPhys::Derivative" -->
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  <p>Module functions of Derivative Operater for GPhys.</p>
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  <dl>
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- <dt><a name="label:3" id="label:3"><code>threepoint_O2nd_deriv(<var>gp</var>, <var>dim_or_dimname</var>, <var>bc</var>=<var>NumRu</var>::<var>Derivative</var>::<var>LINEAR_EXT</var>))</code></a></dt><!-- RDLabel: "threepoint_O2nd_deriv" -->
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+ <dt><h4><a name="label-3" id="label-3"><code>threepoint_O2nd_deriv(<var>gp</var>, <var>dim_or_dimname</var>, <var>bc</var>=<var>LINEAR_EXT</var>))</code></a></h4></dt><!-- RDLabel: "threepoint_O2nd_deriv" -->
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  <dd>
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  <p>Derivate <code>z</code> respect to <code>dim</code> th dimension with 2nd Order difference.
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  return an NArray which result of the difference <!-- Reference, RDLabel "z" doesn't exist --><em class="label-not-found">z</em><!-- Reference end --> divided difference
@@ -43,15 +47,18 @@ dimension of array. ).</pre>
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  respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but
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  <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
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  <li>bc (Numeric) : a Numeric which represent boundary condition.
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- now only LINEAR_EXT(=1) supported. LINEAR_EXT load <!-- Reference, RDLabel "b_expand_linear_ext" doesn't exist --><em class="label-not-found">b_expand_linear_ext</em><!-- Reference end -->
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- which extend boundary with lenear value.</li>
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+ Supported conditions are:
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+ <ul>
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+ <li>LINEAR_EXT(=1) : default value</li>
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+ <li>CYCLIC_EXT(=2)</li>
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+ </ul></li>
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  </ul>
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  <p>RETURN VALUE</p>
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  <ul>
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  <li>O2nd_deriv_data (NArray):
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  (s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t))</li>
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  </ul></dd>
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- <dt><a name="label:4" id="label:4"><code>cderiv(<var>gp</var>, <var>dim_or_dimname</var>, <var>bc</var>=<var>NumRu</var>::<var>Derivative</var>::<var>LINEAR_EXT</var>)</code></a></dt><!-- RDLabel: "cderiv" -->
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+ <dt><h4><a name="label-4" id="label-4"><code>cderiv(<var>gp</var>, <var>dim_or_dimname</var>, <var>bc</var>=<var>LINEAR_EXT</var>, <var>altcoord</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "cderiv" -->
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  <dd>
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  <p>Derivate <code>gp</code> respect to <code>dim</code> th or <code>dimname</code> dimension
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  with center difference. return a GPhys which result of the difference
@@ -66,14 +73,27 @@ of {i} th element in the <!-- Reference, RDLabel "dim" doesn't exist --><em clas
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  the dimension which derivate respect to. you can give number count
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  backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
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  <li>bc (Numeric) : a Numeric which represent boundary condition.
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- now only NumRu::Derivative::LINEAR_EXT(=1) supported. LINEAR_EXT load
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- <!-- Reference, RDLabel "NumRu::Derivative::b_expand_linear_ext" doesn't exist --><em class="label-not-found">NumRu::Derivative::b_expand_linear_ext</em><!-- Reference end --> which extend boundary
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- with linear value.</li>
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+ Supported conditions are:
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+ <ul>
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+ <li>LINEAR_EXT(=1) : default value</li>
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+ <li>CYCLIC_EXT(=2)</li>
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+ </ul></li>
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+ <li>altcoord (nil or 1D VArray): if a VArray, it is used as the
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+ coordiante variable with which differentiation is made.
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+ -- conveneient to make deribative in a different cooridate scaling.
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+ (e.g., differenciate in radian, while the coordinate is in degrees)</li>
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  </ul>
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  <p>RETURN VALUE</p>
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  <ul>
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  <li>a GPhys</li>
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  </ul></dd>
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+ <dt><h4><a name="label-5" id="label-5"><code>deriv2nd(<var>gp</var>, <var>dim_or_dimname</var>, <var>bc</var>=<var>LINEAR_EXT</var>, <var>altcoord</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "deriv2nd" -->
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+ <dd>
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+ <p>2nd Derivate <code>gp</code> respect to <code>dim</code> th or <code>dimname</code> dimension
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+ covering non-uniform grids. Based on:</p>
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+ <pre>( (z_{i+1}-z_{i})/(x_{i+1}-x_{i}) - (z_{i}-z_{i-1})/(x_{i}-x_{i-1}) )
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+ / ((x_{i+1}-x_{i-1})/2)</pre>
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+ <p>See <a href="#label-4">cderiv</a> for usage.</p></dd>
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  </dl>
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  </body>
data/doc/derivative/numru-derivative.html CHANGED
@@ -7,8 +7,8 @@
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  <title>../../lib/numru/derivative.rb</title>
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  </head>
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  <body>
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- <h1><a name="label:0" id="label:0">module NumRu::Derivative in derivative.rb</a></h1><!-- RDLabel: "module NumRu::Derivative in derivative.rb" -->
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- <h2><a name="label:1" id="label:1">todo</a></h2><!-- RDLabel: "todo" -->
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+ <h1><a name="label-0" id="label-0">module NumRu::Derivative in derivative.rb</a></h1><!-- RDLabel: "module NumRu::Derivative in derivative.rb" -->
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+ <h2><a name="label-1" id="label-1">todo</a></h2><!-- RDLabel: "todo" -->
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  <ul>
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  <li>decide argument of b_expand_linear_ext is Symbol or Numeric.
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  <ul>
@@ -17,40 +17,43 @@
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  </ul></li>
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  <li>support other boundary conditions.</li>
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  </ul>
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- <h2><a name="label:2" id="label:2">Index</a></h2><!-- RDLabel: "Index" -->
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+ <h2><a name="label-2" id="label-2">Index</a></h2><!-- RDLabel: "Index" -->
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  <ul>
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- <li><a href="#label:3">module NumRu::Derivative</a>
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+ <li><a href="#label-3">module NumRu::Derivative</a>
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  <ul>
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- <li><a href="#label:4">threepoint_O2nd_deriv</a>
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+ <li><a href="#label-4">threepoint_O2nd_deriv</a>
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  <ul>
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  <li>First derivative (2nd Order difference use three point.)</li>
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  </ul></li>
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- <li><a href="#label:5">cderiv</a>
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+ <li><a href="#label-5">cderiv</a>
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  <ul>
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  <li>First derivative (center difference use two point.)</li>
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  </ul></li>
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- <li><a href="#label:6">b_expand_linear_ext</a>
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+ <li><!-- Reference, RDLabel "deriv2d" doesn't exist --><em class="label-not-found">deriv2d</em><!-- Reference end -->
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+ <ul>
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+ <li>2nd derivative</li>
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+ </ul></li>
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+ <li><a href="#label-7">b_expand_linear_ext</a>
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  <ul>
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  <li>return array extended boundaries with linear extention.</li>
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  </ul></li>
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- <li><a href="#label:7">cdiff</a>
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+ <li><a href="#label-8">cdiff</a>
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  <ul>
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  <li>return difference. (center difference)</li>
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  </ul></li>
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  </ul></li>
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  </ul>
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- <h1><a name="label:3" id="label:3">module NumRu::Derivative</a></h1><!-- RDLabel: "module NumRu::Derivative" -->
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+ <h1><a name="label-3" id="label-3">module NumRu::Derivative</a></h1><!-- RDLabel: "module NumRu::Derivative" -->
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  <p>Module functions of Derivative Operater for NArray.</p>
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  <dl>
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- <dt><a name="label:4" id="label:4"><code>threepoint_O2nd_deriv(<var>z</var>, <var>x</var>, <var>dim</var>, <var>bc</var>=<var>LINEAR_EXT</var>)</code></a></dt><!-- RDLabel: "threepoint_O2nd_deriv" -->
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+ <dt><h4><a name="label-4" id="label-4"><code>threepoint_O2nd_deriv(<var>z</var>, <var>x</var>, <var>dim</var>, <var>bc</var>=<var>LINEAR_EXT</var>)</code></a></h4></dt><!-- RDLabel: "threepoint_O2nd_deriv" -->
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  <dd>
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- <p>Derivate <code>z</code> respect to <code>dim</code> th dimension with 2nd Order difference.
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- return an NArray which result of the difference <!-- Reference, RDLabel "z" doesn't exist --><em class="label-not-found">z</em><!-- Reference end --> divided difference
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- <code>x</code> (in other wards, </p>
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- <pre>(s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t)):
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- now s represents (x_{i} - x_{i-1}) ,t represents (x_{i+1} - x_{i})
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- and _{i} represents the suffix of {i} th element in the ((&lt;dim&gt;)) th
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- dimension of array. ).</pre>
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+ <p>Derivate of <code>z</code> with respect to <code>dim</code> th dim using a 2nd
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+ order 3-point differentiation valid for non-uniform grid: </p>
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+ <pre>(s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t))</pre>
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+ <p>Here, s represents (x_{i} - x_{i-1}) ,t represents (x_{i+1} - x_{i})
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+ and _{i} represents the suffix of {i} th element in the <!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --> th
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+ dimension of the array. ).</p>
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  <p>ARGUMENTS</p>
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  <ul>
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  <li>z (NArray): a NArray which you want to derivative.</li>
@@ -58,21 +61,48 @@ dimension of array. ).</pre>
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  z.rank must be 1.</li>
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  <li>dim (Numeric): a Numeric represents the dimention which derivative respect to.
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  you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
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- <li>bc (Numeric) : a Numeric which represent boundary condition.
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- now only LINEAR_EXT(=1) supported. LINEAR_EXT load <a href="#label:6">b_expand_linear_ext</a> which
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- extend boundary with lenear value.</li>
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+ <li>bc (Numeric) : a Numeric to represent boundary condition.
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+ Supported conditions are expressed in terms of boundary extension
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+ applied before differentiation:
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+ <ul>
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+ <li>LINEAR_EXT(=1): default value. linear extension using two
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+ grid points at the boundaries.</li>
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+ <li>CYCLIC_EXT(=2): cyclic extension as k,0,1,..,k,0 for indices 0,1,..,k</li>
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+ <li>MIRROR_A(=3): for indices 0,1,..,k, extends as 0,0,1,..,k,k
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+ (good for cell interior values with the Neumann condition)</li>
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+ <li>MIRROR_B(=4): for indices 0,1,..,k, extends as 1,0,1,..,k,k-1
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+ (good for cell boundary values with the Neumann condition)</li>
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+ </ul></li>
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  </ul>
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  <p>RETURN VALUE</p>
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  <ul>
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  <li>O2nd_deriv_data (NArray): (s**2*z_{i+1} + (t**2 - s**2)*f_{i} - t**2*f_{i-1}) / (s*t*(s + t))</li>
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  </ul></dd>
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- <dt><a name="label:5" id="label:5"><code>cderiv(<var>z</var>, <var>x</var>, <var>dim</var>, <var>bc</var>=<var>LINEAR_EXT</var>)</code></a></dt><!-- RDLabel: "cderiv" -->
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+ <dt><h4><a name="label-5" id="label-5"><code>cderiv(<var>z</var>, <var>x</var>, <var>dim</var>, <var>bc</var>=<var>LINEAR_EXT</var>)</code></a></h4></dt><!-- RDLabel: "cderiv" -->
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+ <dd>
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+ <p>Derivate of <code>z</code> with respect to <code>dim</code> th dim using centeral
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+ differenciation: (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1})</p>
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+ <p>ARGUMENTS</p>
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+ <ul>
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+ <li>z (NArray): a NArray which you want to derivative.</li>
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+ <li>x (NArray): a NArray represents the dimension which derivative respect
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+ to. z.rank must be 1.</li>
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+ <li>dim (Numeric): a Numeric represents the dimention which derivative
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+ respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but
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+ <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
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+ <li>bc (Numeric) : a Numeric to represent boundary condition.
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+ See <a href="#label-4">threepoint_O2nd_deriv</a> for supported conditions.</li>
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+ </ul>
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+ <p>RETURN VALUE</p>
97
+ <ul>
98
+ <li>cderiv_data (NArray): (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1})</li>
99
+ </ul></dd>
100
+ <dt><h4><a name="label-6" id="label-6"><code>deriv2nd(<var>z</var>, <var>x</var>, <var>dim</var>, <var>bc</var>=<var>LINEAR_EXT</var>)</code></a></h4></dt><!-- RDLabel: "deriv2nd" -->
70
101
  <dd>
71
- <p>Derivate <code>z</code> respect to <code>dim</code> th dimension with center difference.
72
- return an NArray which result of the difference <!-- Reference, RDLabel "z" doesn't exist --><em class="label-not-found">z</em><!-- Reference end --> divided difference
73
- <code>x</code> ( in other wards, (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1}):
74
- now _{i} represents the suffix of {i} th element in the <!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --> th
75
- dimension of array. ).</p>
102
+ <p>2nd Derivate of <code>z</code> with respect to <code>dim</code>-th dim
103
+ covering non-uniform grids. Based on:</p>
104
+ <pre>( (z_{i+1}-z_{i})/(x_{i+1}-x_{i}) - (z_{i}-z_{i-1})/(x_{i}-x_{i-1}) )
105
+ / ((x_{i+1}-x_{i-1})/2)</pre>
76
106
  <p>ARGUMENTS</p>
77
107
  <ul>
78
108
  <li>z (NArray): a NArray which you want to derivative.</li>
@@ -81,15 +111,14 @@ dimension of array. ).</p>
81
111
  <li>dim (Numeric): a Numeric represents the dimention which derivative
82
112
  respect to. you can give number count backward (<!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end -->&lt;0), but
83
113
  <!-- Reference, RDLabel "z.rank ��dim" doesn't exist --><em class="label-not-found">z.rank ��dim</em><!-- Reference end --> must be &gt; 0. </li>
84
- <li>bc (Numeric) : a Numeric which represent boundary condition.
85
- now only LINEAR_EXT(=1) supported. LINEAR_EXT load
86
- <a href="#label:6">b_expand_linear_ext</a> which extend boundary with lenear value.</li>
114
+ <li>bc (Numeric) : a Numeric to represent boundary condition.
115
+ See <a href="#label-4">threepoint_O2nd_deriv</a> for supported conditions.</li>
87
116
  </ul>
88
117
  <p>RETURN VALUE</p>
89
118
  <ul>
90
119
  <li>cderiv_data (NArray): (z_{i+1} - z_{i-1}) / (x_{i+1} - x_{i-1})</li>
91
120
  </ul></dd>
92
- <dt><a name="label:6" id="label:6"><code>b_expand_linear_ext(<var>z</var>, <var>dim</var>)</code></a></dt><!-- RDLabel: "b_expand_linear_ext" -->
121
+ <dt><h4><a name="label-7" id="label-7"><code>b_expand_linear_ext(<var>z</var>, <var>dim</var>)</code></a></h4></dt><!-- RDLabel: "b_expand_linear_ext" -->
93
122
  <dd>
94
123
  <p>expand boundary with linear value. extend array with 1 grid at each
95
124
  boundary with <!-- Reference, RDLabel "dim" doesn't exist --><em class="label-not-found">dim</em><!-- Reference end --> th dimension, and assign th value which diffrential
@@ -107,7 +136,7 @@ value between a grid short of boundary and boundary grid in original array.
107
136
  <ul>
108
137
  <li>expand_data (NArray): </li>
109
138
  </ul></dd>
110
- <dt><a name="label:7" id="label:7"><code>cdiff(<var>x</var>, <var>dim</var>)</code></a></dt><!-- RDLabel: "cdiff" -->
139
+ <dt><h4><a name="label-8" id="label-8"><code>cdiff(<var>x</var>, <var>dim</var>)</code></a></h4></dt><!-- RDLabel: "cdiff" -->
111
140
  <dd>
112
141
  <p>Diffrence operater. return an NArray which a difference <!-- Reference, RDLabel "x" doesn't exist --><em class="label-not-found">x</em><!-- Reference end -->
113
142
  ( in other wards, (x_{i+1} - x_{i-1}): now _{i} represents the suffix of
data/doc/gdir.html CHANGED
@@ -7,28 +7,28 @@
7
7
  <title>../lib/numru/gdir.rb</title>
8
8
  </head>
9
9
  <body>
10
- <h1><a name="label:0" id="label:0">class NumRu::GDir</a></h1><!-- RDLabel: "class NumRu::GDir" -->
10
+ <h1><a name="label-0" id="label-0">class NumRu::GDir</a></h1><!-- RDLabel: "class NumRu::GDir" -->
11
11
  <p>A class to represent diretories and data files for GPhys.</p>
12
- <h2><a name="label:1" id="label:1">Overview</a></h2><!-- RDLabel: "Overview" -->
12
+ <h2><a name="label-1" id="label-1">Overview</a></h2><!-- RDLabel: "Overview" -->
13
13
  <p>A GDir object represents a directory, or a file (such as a NetCDF
14
14
  file or GrADS control file), for which
15
15
  GPhys objects can be defined for the variables in it.
16
16
  This means that a NetCDF file, for example, is treated a
17
17
  directory, rather than a plain file.</p>
18
18
  <p>GDir serves a directory tree under a root (top) directory, which can
19
- be set as a class variable with <a href="#label:3">GDir.top=</a>. All the absolute path
19
+ be set as a class variable with <a href="#label-3">GDir.top=</a>. All the absolute path
20
20
  of GDir is actually relative to the root directory, and to access
21
21
  outside the root directory is prohibited. Furthermore, it has a
22
22
  working directory as a class variable, whose initial value is the top
23
- directory and can be changed by <a href="#label:8">GDir.cd</a>.</p>
23
+ directory and can be changed by <a href="#label-8">GDir.cd</a>.</p>
24
24
  <p>NEW(2005/06): Now GDir can accept DODS URL as a path. Also,
25
25
  the top directory can be set to a DODS URL.</p>
26
- <h2><a name="label:2" id="label:2">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
26
+ <h2><a name="label-2" id="label-2">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
27
27
  <dl>
28
- <dt><h4><a name="label:3" id="label:3"><code>GDir.top=(<var>top</var>)</code></a></h4></dt><!-- RDLabel: "GDir.top=" -->
28
+ <dt><h4><a name="label-3" id="label-3"><code>GDir.top=(<var>top</var>)</code></a></h4></dt><!-- RDLabel: "GDir.top=" -->
29
29
  <dd>
30
30
  <p>Sets the root directory. This should be done before making
31
- any GDir objects by <a href="#label:5">GDir.new</a>. The default root directory
31
+ any GDir objects by <a href="#label-5">GDir.new</a>. The default root directory
32
32
  is the root directory of the local file system ('/').</p>
33
33
  <p>ARGUMENTS</p>
34
34
  <ul>
@@ -38,13 +38,13 @@ is the root directory of the local file system ('/').</p>
38
38
  <ul>
39
39
  <li>absolute path of the top directory (String) (followed by a '/')</li>
40
40
  </ul></dd>
41
- <dt><h4><a name="label:4" id="label:4"><code>GDir.top</code></a></h4></dt><!-- RDLabel: "GDir.top" -->
41
+ <dt><h4><a name="label-4" id="label-4"><code>GDir.top</code></a></h4></dt><!-- RDLabel: "GDir.top" -->
42
42
  <dd>
43
- <p>RETURN VALUE</p>
43
+ RETURN VALUE
44
44
  <ul>
45
45
  <li>absolute path of the top directory (String) (followed by a '/')</li>
46
46
  </ul></dd>
47
- <dt><h4><a name="label:5" id="label:5"><code>GDir.new(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "GDir.new" -->
47
+ <dt><h4><a name="label-5" id="label-5"><code>GDir.new(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "GDir.new" -->
48
48
  <dd>
49
49
  <p>Constructor.</p>
50
50
  <p>ARGUMENTS</p>
@@ -74,7 +74,7 @@ gdir = GDir.new(".")</pre>
74
74
  <pre>gdir = GDir.new("/ho/data.nc")
75
75
  gdir = GDir.new("/ho/data.ctl")</pre></li>
76
76
  </ul></dd>
77
- <dt><h4><a name="label:6" id="label:6"><code>GDir.set_text_pattern(*<var>regexps</var>)</code></a></h4></dt><!-- RDLabel: "GDir.set_text_pattern" -->
77
+ <dt><h4><a name="label-6" id="label-6"><code>GDir.set_text_pattern(*<var>regexps</var>)</code></a></h4></dt><!-- RDLabel: "GDir.set_text_pattern" -->
78
78
  <dd>
79
79
  <p>Sets regular expressions to match the file name of text files.
80
80
  The default is /\.txt$/ and /^\w*$/.</p>
@@ -91,9 +91,9 @@ The default is /\.txt$/ and /^\w*$/.</p>
91
91
  <ul>
92
92
  <li>TypeError if any of the arguments is not a Regexp</li>
93
93
  </ul></dd>
94
- <dt><h4><a name="label:7" id="label:7"><code>GDir.add_text_pattern(<var>regexp</var> [, <var>regexp</var> [, ...]])</code></a></h4></dt><!-- RDLabel: "GDir.add_text_pattern" -->
94
+ <dt><h4><a name="label-7" id="label-7"><code>GDir.add_text_pattern(<var>regexp</var> [, <var>regexp</var> [, ...]])</code></a></h4></dt><!-- RDLabel: "GDir.add_text_pattern" -->
95
95
  <dd>
96
- <p>Similar to <a href="#label:6">GDir.set_text_pattern</a>, but adds regular expressions
96
+ <p>Similar to <a href="#label-6">GDir.set_text_pattern</a>, but adds regular expressions
97
97
  instead of replacing existing ones.</p>
98
98
  <p>RETURN VALUE</p>
99
99
  <ul>
@@ -103,17 +103,17 @@ instead of replacing existing ones.</p>
103
103
  <ul>
104
104
  <li>TypeError if any of the arguments is not a Regexp</li>
105
105
  </ul></dd>
106
- <dt><h4><a name="label:8" id="label:8"><code>GDir.cd(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "GDir.cd" -->
106
+ <dt><h4><a name="label-8" id="label-8"><code>GDir.cd(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "GDir.cd" -->
107
107
  <dd>
108
108
  <p>Changes the working directory of the class.</p>
109
109
  <p>RETURN VALUE</p>
110
110
  <ul>
111
111
  <li>a GDir</li>
112
112
  </ul></dd>
113
- <dt><h4><a name="label:9" id="label:9"><code>GDir.cwd=(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "GDir.cwd=" -->
113
+ <dt><h4><a name="label-9" id="label-9"><code>GDir.cwd=(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "GDir.cwd=" -->
114
114
  <dd>
115
- <p>Aliased to <a href="#label:8">GDir.cd</a>.</p></dd>
116
- <dt><h4><a name="label:10" id="label:10"><code>GDir.cwd</code></a></h4></dt><!-- RDLabel: "GDir.cwd" -->
115
+ Aliased to <a href="#label-8">GDir.cd</a>.</dd>
116
+ <dt><h4><a name="label-10" id="label-10"><code>GDir.cwd</code></a></h4></dt><!-- RDLabel: "GDir.cwd" -->
117
117
  <dd>
118
118
  <p>Returns the current working directory as a GDir. The initial value of
119
119
  the working directory is the top directory.</p>
@@ -121,58 +121,58 @@ the working directory is the top directory.</p>
121
121
  <ul>
122
122
  <li>a GDir</li>
123
123
  </ul></dd>
124
- <dt><h4><a name="label:11" id="label:11"><code>GDir.cd(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "GDir.cd" -->
124
+ <dt><h4><a name="label-11" id="label-11"><code>GDir.cd(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "GDir.cd" -->
125
125
  <dd>
126
126
  <p>Changes the working directory to path</p>
127
127
  <p>RETURN VALUE</p>
128
128
  <ul>
129
129
  <li>a GDir (current working directory changed by path)</li>
130
130
  </ul></dd>
131
- <dt><h4><a name="label:12" id="label:12"><code>GDir[]</code></a><!-- RDLabel: "GDir[]" -->
132
- <dt><h4><a name="label:13" id="label:13"><code>GDir.data</code></a><!-- RDLabel: "GDir.data" -->
133
- <dt><h4><a name="label:14" id="label:14"><code>GDir.text</code></a><!-- RDLabel: "GDir.text" -->
134
- <dt><h4><a name="label:15" id="label:15"><code>GDir.list_dirs</code></a><!-- RDLabel: "GDir.list_dirs" -->
135
- <dt><h4><a name="label:16" id="label:16"><code>GDir.list_dirs_v</code></a><!-- RDLabel: "GDir.list_dirs_v" -->
136
- <dt><h4><a name="label:17" id="label:17"><code>GDir.list_data</code></a><!-- RDLabel: "GDir.list_data" -->
137
- <dt><h4><a name="label:18" id="label:18"><code>GDir.list_data_v</code></a><!-- RDLabel: "GDir.list_data_v" -->
138
- <dt><h4><a name="label:19" id="label:19"><code>GDir.list_texts</code></a><!-- RDLabel: "GDir.list_texts" -->
139
- <dt><h4><a name="label:20" id="label:20"><code>GDir.list_texts_v</code></a><!-- RDLabel: "GDir.list_texts_v" -->
140
- <dt><h4><a name="label:21" id="label:21"><code>GDir.ls</code></a><!-- RDLabel: "GDir.ls" -->
141
- <dt><h4><a name="label:22" id="label:22"><code>GDir.ls_v</code></a></h4></dt><!-- RDLabel: "GDir.ls_v" -->
142
- <dd>
143
- <p>All of these are dispatched to the current working directory.
144
- Thus, GDir.show is equivalent to GDir.cwd.show, for example.</p></dd>
131
+ <dt><h4><a name="label-12" id="label-12"><code>GDir[]</code></a></h4></dt><!-- RDLabel: "GDir[]" -->
132
+ <dt><h4><a name="label-13" id="label-13"><code>GDir.data</code></a></h4></dt><!-- RDLabel: "GDir.data" -->
133
+ <dt><h4><a name="label-14" id="label-14"><code>GDir.text</code></a></h4></dt><!-- RDLabel: "GDir.text" -->
134
+ <dt><h4><a name="label-15" id="label-15"><code>GDir.list_dirs</code></a></h4></dt><!-- RDLabel: "GDir.list_dirs" -->
135
+ <dt><h4><a name="label-16" id="label-16"><code>GDir.list_dirs_v</code></a></h4></dt><!-- RDLabel: "GDir.list_dirs_v" -->
136
+ <dt><h4><a name="label-17" id="label-17"><code>GDir.list_data</code></a></h4></dt><!-- RDLabel: "GDir.list_data" -->
137
+ <dt><h4><a name="label-18" id="label-18"><code>GDir.list_data_v</code></a></h4></dt><!-- RDLabel: "GDir.list_data_v" -->
138
+ <dt><h4><a name="label-19" id="label-19"><code>GDir.list_texts</code></a></h4></dt><!-- RDLabel: "GDir.list_texts" -->
139
+ <dt><h4><a name="label-20" id="label-20"><code>GDir.list_texts_v</code></a></h4></dt><!-- RDLabel: "GDir.list_texts_v" -->
140
+ <dt><h4><a name="label-21" id="label-21"><code>GDir.ls</code></a></h4></dt><!-- RDLabel: "GDir.ls" -->
141
+ <dt><h4><a name="label-22" id="label-22"><code>GDir.ls_v</code></a></h4></dt><!-- RDLabel: "GDir.ls_v" -->
142
+ <dd>
143
+ All of these are dispatched to the current working directory.
144
+ Thus, GDir.show is equivalent to GDir.cwd.show, for example.</dd>
145
145
  </dl>
146
- <h2><a name="label:23" id="label:23">Instance Methods</a></h2><!-- RDLabel: "Instance Methods" -->
146
+ <h2><a name="label-23" id="label-23">Instance Methods</a></h2><!-- RDLabel: "Instance Methods" -->
147
147
  <dl>
148
- <dt><h4><a name="label:24" id="label:24"><code>close</code></a></h4></dt><!-- RDLabel: "close" -->
148
+ <dt><h4><a name="label-24" id="label-24"><code>close</code></a></h4></dt><!-- RDLabel: "close" -->
149
149
  <dd>
150
- <p>Closes the file/directory objects in the GDir.</p></dd>
151
- <dt><h4><a name="label:25" id="label:25"><code>path</code></a></h4></dt><!-- RDLabel: "path" -->
150
+ Closes the file/directory objects in the GDir.</dd>
151
+ <dt><h4><a name="label-25" id="label-25"><code>path</code></a></h4></dt><!-- RDLabel: "path" -->
152
152
  <dd>
153
153
  <p>Returns the path (relative to the top directory)</p>
154
154
  <p>RETURN VALUE</p>
155
155
  <ul>
156
156
  <li>a String</li>
157
157
  </ul></dd>
158
- <dt><h4><a name="label:26" id="label:26"><code>name</code></a></h4></dt><!-- RDLabel: "name" -->
158
+ <dt><h4><a name="label-26" id="label-26"><code>name</code></a></h4></dt><!-- RDLabel: "name" -->
159
159
  <dd>
160
160
  <p>Name of the GDir</p>
161
161
  <p>RETURN VALUE</p>
162
162
  <ul>
163
163
  <li>a String</li>
164
164
  </ul></dd>
165
- <dt><h4><a name="label:27" id="label:27"><code>inspect</code></a></h4></dt><!-- RDLabel: "inspect" -->
165
+ <dt><h4><a name="label-27" id="label-27"><code>inspect</code></a></h4></dt><!-- RDLabel: "inspect" -->
166
166
  <dd>
167
167
  <p>Returns the path</p>
168
168
  <p>RETURN VALUE</p>
169
169
  <ul>
170
170
  <li>a String</li>
171
171
  </ul></dd>
172
- <dt><h4><a name="label:28" id="label:28"><code>[<var>path</var>]</code></a></h4></dt><!-- RDLabel: "[]" -->
172
+ <dt><h4><a name="label-28" id="label-28"><code>[<var>path</var>]</code></a></h4></dt><!-- RDLabel: "[]" -->
173
173
  <dd>
174
174
  <p>Returns a GDir, GPhys, or File (text), by calling
175
- <a href="#label:29">dir</a>, <a href="#label:30">data</a>, or <a href="#label:31">text</a> depending on path.</p>
175
+ <a href="#label-29">dir</a>, <a href="#label-30">data</a>, or <a href="#label-31">text</a> depending on path.</p>
176
176
  <p>ARGUMENTS</p>
177
177
  <ul>
178
178
  <li><var>path</var> (String): Either relative or absolute.</li>
@@ -185,7 +185,7 @@ Thus, GDir.show is equivalent to GDir.cwd.show, for example.</p></dd>
185
185
  <ul>
186
186
  <li>an exception is raised if <var>path</var> is not appropriate.</li>
187
187
  </ul></dd>
188
- <dt><h4><a name="label:29" id="label:29"><code>dir(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "dir" -->
188
+ <dt><h4><a name="label-29" id="label-29"><code>dir(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "dir" -->
189
189
  <dd>
190
190
  <p>Returns a GDir specified the <var>path</var>.</p>
191
191
  <p>ARGUMENTS</p>
@@ -200,7 +200,7 @@ Thus, GDir.show is equivalent to GDir.cwd.show, for example.</p></dd>
200
200
  <ul>
201
201
  <li>an exception is raised if <var>path</var> is invalid as a GDir.</li>
202
202
  </ul></dd>
203
- <dt><h4><a name="label:30" id="label:30"><code>data(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "data" -->
203
+ <dt><h4><a name="label-30" id="label-30"><code>data(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "data" -->
204
204
  <dd>
205
205
  <p>Returns a GPhys specified the <var>path</var>.</p>
206
206
  <p>ARGUMENTS</p>
@@ -215,7 +215,7 @@ Thus, GDir.show is equivalent to GDir.cwd.show, for example.</p></dd>
215
215
  <ul>
216
216
  <li>an exception is raised if <var>path</var> is invalid as a GPhys.</li>
217
217
  </ul></dd>
218
- <dt><h4><a name="label:31" id="label:31"><code>text(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "text" -->
218
+ <dt><h4><a name="label-31" id="label-31"><code>text(<var>path</var>)</code></a></h4></dt><!-- RDLabel: "text" -->
219
219
  <dd>
220
220
  <p>Returns a text file object specified the <var>path</var>.</p>
221
221
  <p>ARGUMENTS</p>
@@ -231,7 +231,7 @@ Thus, GDir.show is equivalent to GDir.cwd.show, for example.</p></dd>
231
231
  <li>an exception is raised if <var>path</var> is invalid as a text file
232
232
  (based on the pattern: see above).</li>
233
233
  </ul></dd>
234
- <dt><h4><a name="label:32" id="label:32"><code>find_dir( <var>filt</var> )</code></a></h4></dt><!-- RDLabel: "find_dir" -->
234
+ <dt><h4><a name="label-32" id="label-32"><code>find_dir( <var>filt</var> )</code></a></h4></dt><!-- RDLabel: "find_dir" -->
235
235
  <dd>
236
236
  <p>Recursively search a GDir whose name match <var>filt</var>..</p>
237
237
  <p>ARGUMENTS</p>
@@ -243,7 +243,7 @@ Thus, GDir.show is equivalent to GDir.cwd.show, for example.</p></dd>
243
243
  <ul>
244
244
  <li>an Array holding pathes (String) that matched.</li>
245
245
  </ul></dd>
246
- <dt><h4><a name="label:33" id="label:33"><code>find_data( <var>name</var>=<var>nil</var>,<var>long_name</var>=<var>nil</var>,<var>units</var>=<var>nil</var> )</code></a></h4></dt><!-- RDLabel: "find_data" -->
246
+ <dt><h4><a name="label-33" id="label-33"><code>find_data( <var>name</var>=<var>nil</var>,<var>long_name</var>=<var>nil</var>,<var>units</var>=<var>nil</var> )</code></a></h4></dt><!-- RDLabel: "find_data" -->
247
247
  <dd>
248
248
  <p>Recursively search data variables under the directory.
249
249
  Mathces are by taking "AND" for non-nil arguments.
@@ -262,10 +262,10 @@ Mathces are by taking "AND" for non-nil arguments.
262
262
  <li>an Array holding the path and variable name that matched
263
263
  (two-element Array of String; [path, variable_name] ).</li>
264
264
  </ul></dd>
265
- <dt><h4><a name="label:34" id="label:34"><code>list_dirs(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "list_dirs" -->
265
+ <dt><h4><a name="label-34" id="label-34"><code>list_dirs(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "list_dirs" -->
266
266
  <dd>
267
267
  <p>Returns the names of the directories.</p>
268
- <p>See also <a href="#label:40">ls</a>.</p>
268
+ <p>See also <a href="#label-40">ls</a>.</p>
269
269
  <p>ARGUMENTS</p>
270
270
  <ul>
271
271
  <li><var>path</var> (nil or String): if nil, the method is applied to the
@@ -276,13 +276,13 @@ Mathces are by taking "AND" for non-nil arguments.
276
276
  <ul>
277
277
  <li>an Array of String</li>
278
278
  </ul></dd>
279
- <dt><h4><a name="label:35" id="label:35"><code>list_dirs_v(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "list_dirs_v" -->
279
+ <dt><h4><a name="label-35" id="label-35"><code>list_dirs_v(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "list_dirs_v" -->
280
280
  <dd>
281
- <p>Verbose version of <a href="#label:34">list_dirs</a>, showing size and mtime like 'ls -l'.</p>
282
- <p>See also <a href="#label:43">ls_l</a>.</p>
281
+ <p>Verbose version of <a href="#label-34">list_dirs</a>, showing size and mtime like 'ls -l'.</p>
282
+ <p>See also <a href="#label-43">ls_l</a>.</p>
283
283
  <p>ARGUMENTS</p>
284
284
  <ul>
285
- <li>See <a href="#label:34">list_dirs</a>.</li>
285
+ <li>See <a href="#label-34">list_dirs</a>.</li>
286
286
  </ul>
287
287
  <p>RETURN VALUE</p>
288
288
  <ul>
@@ -290,7 +290,7 @@ Mathces are by taking "AND" for non-nil arguments.
290
290
  <p>Example of a string:</p>
291
291
  <pre>275492 Apr 12 19:15 hogehoge_data.nc/</pre></li>
292
292
  </ul></dd>
293
- <dt><h4><a name="label:36" id="label:36"><code>list_data(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "list_data" -->
293
+ <dt><h4><a name="label-36" id="label-36"><code>list_data(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "list_data" -->
294
294
  <dd>
295
295
  <p>Returns the names of the data (variables on which GPhys objects
296
296
  can be defined.) Returns a non-empty array if the GDir (current
@@ -306,14 +306,14 @@ NetCDF or GrADS control file).</p>
306
306
  <ul>
307
307
  <li>an Array of String</li>
308
308
  </ul></dd>
309
- <dt><h4><a name="label:37" id="label:37"><code>list_data_v(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "list_data_v" -->
309
+ <dt><h4><a name="label-37" id="label-37"><code>list_data_v(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "list_data_v" -->
310
310
  <dd>
311
- <p>Verbose version of <a href="#label:36">list_data</a>, showing shape, long_name,
311
+ <p>Verbose version of <a href="#label-36">list_data</a>, showing shape, long_name,
312
312
  and units.</p>
313
- <p>See also <a href="#label:43">ls_l</a>.</p>
313
+ <p>See also <a href="#label-43">ls_l</a>.</p>
314
314
  <p>ARGUMENTS</p>
315
315
  <ul>
316
- <li>See <a href="#label:36">list_data</a>.</li>
316
+ <li>See <a href="#label-36">list_data</a>.</li>
317
317
  </ul>
318
318
  <p>RETURN VALUE</p>
319
319
  <ul>
@@ -321,7 +321,7 @@ and units.</p>
321
321
  <p>Example of a string:</p>
322
322
  <pre>u [lon=120,lat=120,z=40,t=73] 'x components of velocity' (m/s)</pre></li>
323
323
  </ul></dd>
324
- <dt><h4><a name="label:38" id="label:38"><code>list_texts(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "list_texts" -->
324
+ <dt><h4><a name="label-38" id="label-38"><code>list_texts(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "list_texts" -->
325
325
  <dd>
326
326
  <p>Returns the names of the text files.
327
327
  Whether a file is a text file or not is judged based on the
@@ -340,63 +340,63 @@ can be customized by <!-- Reference, RDLabel "set_text_patterns" doesn't exist -
340
340
  <ul>
341
341
  <li>an Array of String</li>
342
342
  </ul></dd>
343
- <dt><h4><a name="label:39" id="label:39"><code>list_texts_v(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "list_texts_v" -->
343
+ <dt><h4><a name="label-39" id="label-39"><code>list_texts_v(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "list_texts_v" -->
344
344
  <dd>
345
- <p>Verbose version of <a href="#label:38">list_texts</a>, showing size and mtime like 'ls -l'.</p>
346
- <p>See also <a href="#label:43">ls_l</a>.</p>
345
+ <p>Verbose version of <a href="#label-38">list_texts</a>, showing size and mtime like 'ls -l'.</p>
346
+ <p>See also <a href="#label-43">ls_l</a>.</p>
347
347
  <p>ARGUMENTS</p>
348
348
  <ul>
349
- <li>See <a href="#label:38">list_texts</a>.</li>
349
+ <li>See <a href="#label-38">list_texts</a>.</li>
350
350
  </ul>
351
351
  <p>RETURN VALUE</p>
352
352
  <ul>
353
353
  <li>an Array of String</li>
354
354
  </ul></dd>
355
- <dt><h4><a name="label:40" id="label:40"><code>ls(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "ls" -->
355
+ <dt><h4><a name="label-40" id="label-40"><code>ls(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "ls" -->
356
356
  <dd>
357
- <p>Prints the results of <a href="#label:34">list_dirs</a>, <a href="#label:36">list_data</a>, and
358
- <a href="#label:38">list_texts</a> on the standard output.</p>
357
+ <p>Prints the results of <a href="#label-34">list_dirs</a>, <a href="#label-36">list_data</a>, and
358
+ <a href="#label-38">list_texts</a> on the standard output.</p>
359
359
  <p>RETURN VALUE</p>
360
360
  <ul>
361
361
  <li>nil</li>
362
362
  </ul></dd>
363
- <dt><h4><a name="label:41" id="label:41"><code>each_dir</code></a></h4></dt><!-- RDLabel: "each_dir" -->
363
+ <dt><h4><a name="label-41" id="label-41"><code>each_dir</code></a></h4></dt><!-- RDLabel: "each_dir" -->
364
364
  <dd>
365
- <p>Iterator for each directory (GDir) under self.</p></dd>
366
- <dt><h4><a name="label:42" id="label:42"><code>each_data</code></a></h4></dt><!-- RDLabel: "each_data" -->
365
+ Iterator for each directory (GDir) under self.</dd>
366
+ <dt><h4><a name="label-42" id="label-42"><code>each_data</code></a></h4></dt><!-- RDLabel: "each_data" -->
367
367
  <dd>
368
- <p>Iterator for each GPhys under self.</p></dd>
369
- <dt><h4><a name="label:43" id="label:43"><code>ls_l(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "ls_l" -->
368
+ Iterator for each GPhys under self.</dd>
369
+ <dt><h4><a name="label-43" id="label-43"><code>ls_l(<var>path</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "ls_l" -->
370
370
  <dd>
371
- <p>Verbose version of <a href="#label:40">ls</a>.
372
- Prints the results of <a href="#label:35">list_dirs_v</a>, <a href="#label:37">list_data_v</a>, and
373
- <a href="#label:39">list_texts_v</a> on the standard output.</p>
371
+ <p>Verbose version of <a href="#label-40">ls</a>.
372
+ Prints the results of <a href="#label-35">list_dirs_v</a>, <a href="#label-37">list_data_v</a>, and
373
+ <a href="#label-39">list_texts_v</a> on the standard output.</p>
374
374
  <p>RETURN VALUE</p>
375
375
  <ul>
376
376
  <li>nil</li>
377
377
  </ul></dd>
378
- <dt><h4><a name="label:44" id="label:44"><code>mtime</code></a></h4></dt><!-- RDLabel: "mtime" -->
378
+ <dt><h4><a name="label-44" id="label-44"><code>mtime</code></a></h4></dt><!-- RDLabel: "mtime" -->
379
379
  <dd>
380
380
  <p>Returns the last modified time.</p>
381
381
  <p>RETURN VALUE</p>
382
382
  <ul>
383
383
  <li>a Time</li>
384
384
  </ul></dd>
385
- <dt><h4><a name="label:45" id="label:45"><code>atime</code></a></h4></dt><!-- RDLabel: "atime" -->
385
+ <dt><h4><a name="label-45" id="label-45"><code>atime</code></a></h4></dt><!-- RDLabel: "atime" -->
386
386
  <dd>
387
387
  <p>Returns the last accessed time.</p>
388
388
  <p>RETURN VALUE</p>
389
389
  <ul>
390
390
  <li>a Time</li>
391
391
  </ul></dd>
392
- <dt><h4><a name="label:46" id="label:46"><code>ctime</code></a></h4></dt><!-- RDLabel: "ctime" -->
392
+ <dt><h4><a name="label-46" id="label-46"><code>ctime</code></a></h4></dt><!-- RDLabel: "ctime" -->
393
393
  <dd>
394
394
  <p>Returns ctime.</p>
395
395
  <p>RETURN VALUE</p>
396
396
  <ul>
397
397
  <li>a Time</li>
398
398
  </ul></dd>
399
- <dt><h4><a name="label:47" id="label:47"><code>mtime_like_ls_l</code></a></h4></dt><!-- RDLabel: "mtime_like_ls_l" -->
399
+ <dt><h4><a name="label-47" id="label-47"><code>mtime_like_ls_l</code></a></h4></dt><!-- RDLabel: "mtime_like_ls_l" -->
400
400
  <dd>
401
401
  <p>Returns the last modified time formated as in ls -l.
402
402
  That is, if the time of last modification is greater than