gentooboontoo-gphys 0.6.1.3 → 1.3.1.1
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- checksums.yaml +4 -4
- data/ChangeLog +5631 -464
- data/LICENSE.txt +34 -0
- data/README +23 -25
- data/bin/gdir_client +25 -7
- data/bin/gdir_server +19 -13
- data/bin/gpaop +41 -28
- data/bin/gpcat +19 -11
- data/bin/gpcut +20 -11
- data/bin/gpedit +37 -1
- data/bin/gplist +5 -4
- data/bin/gpmath +21 -14
- data/bin/gpmaxmin +9 -7
- data/bin/gpprint +15 -11
- data/bin/gpvect +217 -96
- data/bin/gpview +278 -123
- data/bin/grads2nc_with_gphys +11 -6
- data/doc/attribute.html +1 -1
- data/doc/axis.html +85 -66
- data/doc/coordmapping.html +22 -22
- data/doc/dclext.html +709 -0
- data/doc/derivative/gphys-derivative.html +33 -13
- data/doc/derivative/numru-derivative.html +60 -31
- data/doc/gdir.html +76 -76
- data/doc/gdir_server.html +28 -16
- data/doc/ggraph.html +493 -706
- data/doc/gpcat.html +28 -11
- data/doc/gpcut.html +26 -11
- data/doc/gphys.html +195 -71
- data/doc/gphys_fft.html +162 -21
- data/doc/gphys_grads_io.html +9 -9
- data/doc/gphys_grib_io.html +7 -7
- data/doc/gphys_io.html +118 -31
- data/doc/gphys_io_common.html +1 -1
- data/doc/gphys_netcdf_io.html +14 -14
- data/doc/gplist.html +6 -5
- data/doc/gpmath.html +32 -14
- data/doc/gpmaxmin.html +9 -7
- data/doc/gpprint.html +14 -11
- data/doc/gpview.html +254 -146
- data/doc/grads2nc_with_gphys.html +6 -8
- data/doc/grads_gridded.html +77 -77
- data/doc/grib.html +102 -59
- data/doc/grid.html +45 -61
- data/doc/index.html +51 -41
- data/doc/index.rd +47 -36
- data/doc/netcdf_convention.html +39 -39
- data/doc/unumeric.html +79 -30
- data/doc/update +2 -1
- data/doc/varray.html +62 -56
- data/doc/varraycomposite.html +3 -3
- data/ext/ext_coord.c +209 -0
- data/ext/ext_init.c +7 -0
- data/ext/extconf.rb +41 -0
- data/ext/interpo.c +536 -0
- data/ext/multibitIO.c +567 -0
- data/lib/numru/dcl_mouse.rb +71 -0
- data/lib/numru/dclext.rb +2749 -0
- data/lib/numru/derivative.rb +124 -31
- data/lib/numru/ganalysis.rb +7 -0
- data/lib/numru/ganalysis/covariance.rb +154 -0
- data/lib/numru/ganalysis/eof.rb +302 -0
- data/lib/numru/ganalysis/histogram.rb +337 -0
- data/lib/numru/ganalysis/met.rb +872 -0
- data/lib/numru/ganalysis/planet.rb +392 -0
- data/lib/numru/ggraph.rb +1709 -2498
- data/lib/numru/gphys.rb +7 -1
- data/lib/numru/gphys/assoccoords.rb +384 -0
- data/lib/numru/gphys/attribute.rb +10 -11
- data/lib/numru/gphys/axis.rb +97 -25
- data/lib/numru/gphys/coordmapping.rb +2 -2
- data/lib/numru/gphys/derivative.rb +117 -46
- data/lib/numru/gphys/gphys.rb +595 -31
- data/lib/numru/gphys/gphys_fft.rb +365 -13
- data/lib/numru/gphys/gphys_grads_io.rb +6 -5
- data/lib/numru/gphys/gphys_grib_io.rb +6 -6
- data/lib/numru/gphys/gphys_gtool3_io.rb +162 -0
- data/lib/numru/gphys/gphys_hdfeos5_io.rb +672 -0
- data/lib/numru/gphys/gphys_io.rb +260 -20
- data/lib/numru/gphys/gphys_io_common.rb +1 -1
- data/lib/numru/gphys/gphys_netcdf_io.rb +111 -40
- data/lib/numru/gphys/gphys_nusdas_io.rb +64 -7
- data/lib/numru/gphys/grads_gridded.rb +158 -57
- data/lib/numru/gphys/grib.rb +205 -157
- data/lib/numru/gphys/grib_params.rb +196 -1
- data/lib/numru/gphys/grid.rb +214 -83
- data/lib/numru/gphys/gtool3.rb +771 -0
- data/lib/numru/gphys/interpolate.rb +992 -0
- data/lib/numru/gphys/mdstorage.rb +145 -0
- data/lib/numru/gphys/narray_ext.rb +34 -0
- data/lib/numru/gphys/netcdf_convention.rb +44 -2
- data/lib/numru/gphys/subsetmapping.rb +1 -1
- data/lib/numru/gphys/unumeric.rb +101 -8
- data/lib/numru/gphys/varray.rb +66 -20
- data/lib/numru/gphys/varraycomposite.rb +107 -29
- data/lib/numru/gphys/varraygrib.rb +70 -8
- data/lib/numru/gphys/varraygtool3.rb +226 -0
- data/lib/numru/gphys/varrayhdfeos5.rb +451 -0
- data/lib/numru/gphys/varraynetcdf.rb +13 -5
- data/lib/numru/gphys/version.rb +3 -0
- data/sample/druby_cli1.rb +2 -0
- data/sample/druby_cli2.rb +0 -6
- data/sample/druby_serv2.rb +0 -13
- data/sample/ncep_theta_coord.rb +79 -0
- data/test/eof_slp.rb +28 -0
- data/test/mltbit.dat +0 -0
- data/test/test_multibitIO.rb +19 -0
- data/testdata/assoc_crds.nc +0 -0
- metadata +79 -8
- data/lib/numru/dclext_datetime_ax.rb +0 -220
- data/lib/numru/vizshot.rb +0 -697
data/doc/netcdf_convention.html
CHANGED
@@ -7,22 +7,22 @@
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<title>../lib/numru/gphys/netcdf_convention.rb</title>
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</head>
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<body>
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<h2><a name="label
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<h2><a name="label-0" id="label-0">INDEX</a></h2><!-- RDLabel: "INDEX" -->
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<ul>
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<li><a href="#label
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<li><a href="#label
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<li><a href="#label-1">module NumRu::NetCDF_Conventions</a></li>
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<li><a href="#label-6">module NumRu::NetCDF_Convention_Users_Guide</a>
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<ul>
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<li><a href="#label
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<li><a href="#label
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<li><a href="#label-15">module NumRu::NetCDF_Convention_Users_Guide::Attribute_Mixin</a></li>
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<li><a href="#label-18">module NumRu::NetCDF_Convention_Users_Guide::VArray_Mixin</a></li>
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</ul></li>
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<li><a href="#label
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<li><a href="#label-20">module NumRu::NetCDF_Convention_Wind_Profiler</a></li>
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</ul>
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<h1><a name="label
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<h1><a name="label-1" id="label-1">module NumRu::NetCDF_Conventions</a></h1><!-- RDLabel: "module NumRu::NetCDF_Conventions" -->
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<p>NetCDF_Conventions is the general handler of NetCDF conventions for the
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GPhys library.</p>
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<h2><a name="label
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<h2><a name="label-2" id="label-2">Module Functions</a></h2><!-- RDLabel: "Module Functions" -->
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<dl>
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<dt><h4><a name="label
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<dt><h4><a name="label-3" id="label-3"><code>find( <var>netcdf</var> )</code></a></h4></dt><!-- RDLabel: "find" -->
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<dd>
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<p>Figures out what NetCDF convention a netcdf file is following.</p>
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<p>ARGUMENTS</p>
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@@ -36,11 +36,11 @@ GPhys library.</p>
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<p>REMARK</p>
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<ul>
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<li>The convention is figured out from the 'Conventions' global attribute.
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You can instead fix the convention by using <a href="#label
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You can instead fix the convention by using <a href="#label-4">fix_to</a>.</li>
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</ul></dd>
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<dt><h4><a name="label
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<dt><h4><a name="label-4" id="label-4"><code>fix_to( <var>convention</var> )</code></a></h4></dt><!-- RDLabel: "fix_to" -->
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<dd>
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<p>Fix the convention to be returned by <a href="#label
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<p>Fix the convention to be returned by <a href="#label-3">find</a> regardless the value
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of the 'Conventions' attribute.</p>
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<p>ARGUMENTS</p>
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<ul>
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<ul>
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<li>convention</li>
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</ul></dd>
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<dt><h4><a name="label
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<dt><h4><a name="label-5" id="label-5"><code>add_history(<var>netcdf</var>, <var>str</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "add_history" -->
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<dd>
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<p>Adds a line to the 'history' global convention of <var>netcdf</var>.
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The line consists of date, time, user name, and <var>str</var>
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@@ -61,26 +61,26 @@ if present (e.g., '2004-03-02 17:52:25 JST horinout> '+str).</p>
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<li><var>str</var> (nil or String): if present, added to the end of the line.</li>
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</ul></dd>
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</dl>
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<h1><a name="label
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<h1><a name="label-6" id="label-6">module NumRu::NetCDF_Convention_Users_Guide</a></h1><!-- RDLabel: "module NumRu::NetCDF_Convention_Users_Guide" -->
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<p>The NetCDF Users Guide Convention
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(http://www.unidata.ucar.edu/packages/netcdf/docs.html).</p>
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<h2><a name="label
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<h2><a name="label-7" id="label-7">Constants</a></h2><!-- RDLabel: "Constants" -->
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<dl>
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<dt><h4><a name="label
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<dt><h4><a name="label-8" id="label-8"><code>Attribute_Mixin</code></a></h4></dt><!-- RDLabel: "Attribute_Mixin" -->
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</dl>
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<p>See below: <a href="#label
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<p>See below: <a href="#label-15">module NumRu::NetCDF_Convention_Users_Guide::Attribute_Mixin</a>.</p>
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<dl>
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<dt><h4><a name="label
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<dt><h4><a name="label-9" id="label-9"><code>VArray_Mixin</code></a></h4></dt><!-- RDLabel: "VArray_Mixin" -->
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</dl>
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<p>See below: <a href="#label
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<h2><a name="label
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<p>See below: <a href="#label-18">module NumRu::NetCDF_Convention_Users_Guide::VArray_Mixin</a>.</p>
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<h2><a name="label-10" id="label-10">Module Functions</a></h2><!-- RDLabel: "Module Functions" -->
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<dl>
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<dt><h4><a name="label
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<dt><h4><a name="label-11" id="label-11"><code>to_s</code></a></h4></dt><!-- RDLabel: "to_s" -->
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<dd>
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Returns a string to be used as representing the convention.
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The Users Guide Convention does not have one, so a string
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was tentatively assigned by Horinouchi.</
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<dt><h4><a name="label
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was tentatively assigned by Horinouchi.</dd>
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<dt><h4><a name="label-12" id="label-12"><code>coord_var_names(<var>ncvar</var>)</code></a></h4></dt><!-- RDLabel: "coord_var_names" -->
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<dd>
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<p>Returns the names of coordinate variables for all the dimensions
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of <var>ncvar</var>.</p>
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<ul>
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<li>Array of strings, whose length is the rank of <var>ncvar</var>.</li>
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</ul></dd>
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<dt><h4><a name="label
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<dt><h4><a name="label-13" id="label-13"><code>cell_bounds?(<var>coord_var</var>)</code></a></h4></dt><!-- RDLabel: "cell_bounds?" -->
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<dd>
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Might be reorganized in future when the gtool4 convention is supported.</
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<dt><h4><a name="label
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Document to be written. (returns false&nil in this convention.)
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Might be reorganized in future when the gtool4 convention is supported.</dd>
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<dt><h4><a name="label-14" id="label-14"><code>cell_center?(<var>coord_var</var>)</code></a></h4></dt><!-- RDLabel: "cell_center?" -->
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<dd>
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Might be reorganized in future when the gtool4 convention is supported.</
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Document to be written. (returns false&nil in this convention.)
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Might be reorganized in future when the gtool4 convention is supported.</dd>
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</dl>
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<p>--------------------------------------------------</p>
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<h2><a name="label
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<h2><a name="label-15" id="label-15">module NumRu::NetCDF_Convention_Users_Guide::Attribute_Mixin</a></h2><!-- RDLabel: "module NumRu::NetCDF_Convention_Users_Guide::Attribute_Mixin" -->
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<p>The module to be mixed in NumRu::AttributeNetCDF.</p>
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<h3><a name="label
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<h3><a name="label-16" id="label-16">Instance Methods</a></h3><!-- RDLabel: "Instance Methods" -->
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<p>Methods below will become sigular methods of NumRu::AttributeNetCDF.</p>
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<dl>
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<dt><h4><a name="label
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<dt><h4><a name="label-17" id="label-17"><code>copy(<var>to</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "copy" -->
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<dd>
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but edits some standard attributes if to is nil (copy onto memory))
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Same as super (the one overridden by this method),
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but edits some standard attributes if to is nil (copy onto memory)):
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<ul>
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<li>scale_factor, add_offset: removed, since data copying includes
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"unpaking" by interpreting them</li>
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</ul></dd>
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</dl>
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<p>---------------------------------------------------</p>
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<h2><a name="label
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<h2><a name="label-18" id="label-18">module NumRu::NetCDF_Convention_Users_Guide::VArray_Mixin</a></h2><!-- RDLabel: "module NumRu::NetCDF_Convention_Users_Guide::VArray_Mixin" -->
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<p>The module to be mixed in NumRu::VArrayNetCDF.</p>
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<h3><a name="label
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<h3><a name="label-19" id="label-19">Instance Methods</a></h3><!-- RDLabel: "Instance Methods" -->
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<p>Currently none, meaning is that no modification is made
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in VArrayNetCDF.</p>
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<p>---------------------------------------------------------------------</p>
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<h1><a name="label
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<h1><a name="label-20" id="label-20">module NumRu::NetCDF_Convention_Wind_Profiler</a></h1><!-- RDLabel: "module NumRu::NetCDF_Convention_Wind_Profiler" -->
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<p>The Wind Profiler convention
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(http://www.kurasc.kyoto-u.ac.jp/radar-group/wind_profiler_conventions/).</p>
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<p>Inherits NetCDF_Convention_Users_Guide and makes appropriate redefinitions.
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See <a href="#label
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See <a href="#label-6">module NumRu::NetCDF_Convention_Users_Guide</a> for the description
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of constants and module functions.</p>
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</body>
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data/doc/unumeric.html
CHANGED
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<title>../lib/numru/gphys/unumeric.rb</title>
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</head>
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<body>
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<h1><a name="label
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<h1><a name="label-0" id="label-0">class NumRu::UNumeric</a></h1><!-- RDLabel: "class NumRu::UNumeric" -->
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<p>Class of Numeric with Units.</p>
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<p>Dependent on
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<a href="http://ruby.gfd-dennou.org/products/numru=units">NumRu::Units</a>
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and Rational, a standard library.</p>
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<h2><a name="label
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<h2><a name="label-1" id="label-1">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
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<dl>
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<dt><h4><a name="label
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<dt><h4><a name="label-2" id="label-2"><code>new(<var>val</var>, <var>uni</var>)</code></a></h4></dt><!-- RDLabel: "new" -->
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<dd>
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<p>Constractor.</p>
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<p>ARGUMENTS</p>
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@@ -23,43 +23,54 @@ and Rational, a standard library.</p>
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<li><var>units</var> (NumRu::Units or String): if string, internally converted to
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a NumRu::Units</li>
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</ul></dd>
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<dt><h4><a name="label-3" id="label-3"><code>[val, <var>uni</var>]</code></a></h4></dt><!-- RDLabel: "[val, uni]" -->
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<dd>
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Same as new</dd>
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<dt><h4><a name="label-4" id="label-4"><code>from_date(<var>date</var>, <var>units</var>)</code></a></h4></dt><!-- RDLabel: "from_date" -->
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<dd>
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<p>Convert a DateTime (or Date) to a UNUmeric</p>
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<p>ARGUMENTS</p>
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<ul>
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<li>date (Date or DateTime)</li>
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<li>units (Units or String) : units of the UNumeric to be created</li>
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</ul></dd>
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</dl>
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<h2><a name="label-5" id="label-5">Methods</a></h2><!-- RDLabel: "Methods" -->
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<dl>
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<dt><h4><a name="label
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<dt><h4><a name="label-6" id="label-6"><code>val</code></a></h4></dt><!-- RDLabel: "val" -->
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<dd>
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RETURN VALUE
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<ul>
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<li>the value (
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<li>the value (Numeric)</li>
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</ul></dd>
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<dt><h4><a name="label
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<dt><h4><a name="label-7" id="label-7"><code>units</code></a></h4></dt><!-- RDLabel: "units" -->
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|
<dd>
|
37
|
-
|
48
|
+
RETURN VALUE
|
38
49
|
<ul>
|
39
50
|
<li>the units (NumRu::Units)</li>
|
40
51
|
</ul></dd>
|
41
|
-
<dt><h4><a name="label
|
52
|
+
<dt><h4><a name="label-8" id="label-8"><code>inspect</code></a></h4></dt><!-- RDLabel: "inspect" -->
|
42
53
|
<dd>
|
43
|
-
|
54
|
+
RETURN VALUE
|
44
55
|
<ul>
|
45
56
|
<li>a String (e.g., '1 m')</li>
|
46
57
|
</ul></dd>
|
47
|
-
<dt><h4><a name="label
|
58
|
+
<dt><h4><a name="label-9" id="label-9"><code>to_s</code></a></h4></dt><!-- RDLabel: "to_s" -->
|
48
59
|
<dd>
|
49
|
-
|
50
|
-
<dt><h4><a name="label
|
60
|
+
aliasesed to <a href="#label-8">inspect</a>.</dd>
|
61
|
+
<dt><h4><a name="label-10" id="label-10"><code>to_f</code></a></h4></dt><!-- RDLabel: "to_f" -->
|
51
62
|
<dd>
|
52
|
-
|
63
|
+
RETURN VALUE
|
53
64
|
<ul>
|
54
65
|
<li>val.to_f</li>
|
55
66
|
</ul></dd>
|
56
|
-
<dt><h4><a name="label
|
67
|
+
<dt><h4><a name="label-11" id="label-11"><code>to_i</code></a></h4></dt><!-- RDLabel: "to_i" -->
|
57
68
|
<dd>
|
58
|
-
|
69
|
+
RETURN VALUE
|
59
70
|
<ul>
|
60
71
|
<li>val.to_i</li>
|
61
72
|
</ul></dd>
|
62
|
-
<dt><h4><a name="label
|
73
|
+
<dt><h4><a name="label-12" id="label-12"><code>convert(<var>to_units</var>)</code></a></h4></dt><!-- RDLabel: "convert" -->
|
63
74
|
<dd>
|
64
75
|
<p>Convert to <var>to_units</var>.</p>
|
65
76
|
<p>RETURN VALUE</p>
|
@@ -70,9 +81,9 @@ and Rational, a standard library.</p>
|
|
70
81
|
<ul>
|
71
82
|
<li>when the current units is incompatible with to_units.</li>
|
72
83
|
</ul></dd>
|
73
|
-
<dt><h4><a name="label
|
84
|
+
<dt><h4><a name="label-13" id="label-13"><code>convert2</code></a></h4></dt><!-- RDLabel: "convert2" -->
|
74
85
|
<dd>
|
75
|
-
<p>Same as <a href="#label
|
86
|
+
<p>Same as <a href="#label-12">convert</a>, but returns <var>self</var> if the units are
|
76
87
|
incompatible (Warned).</p>
|
77
88
|
<p>EXCEPTION</p>
|
78
89
|
<ul>
|
@@ -84,11 +95,11 @@ condition is satisfied.</p>
|
|
84
95
|
<ul>
|
85
96
|
<li>the units of <var>self</var> and <var>to_units</var> are incompatible.</li>
|
86
97
|
</ul></dd>
|
87
|
-
<dt><h4><a name="label
|
98
|
+
<dt><h4><a name="label-14" id="label-14"><code>coerce(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "coerce" -->
|
88
99
|
<dd>
|
89
|
-
|
90
|
-
NOTE: VArray and GPhys know UNumeric.</
|
91
|
-
<dt><h4><a name="label
|
100
|
+
As you know. Can handle Numeric, Array, NArray.
|
101
|
+
NOTE: VArray and GPhys know UNumeric.</dd>
|
102
|
+
<dt><h4><a name="label-15" id="label-15"><code>*(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "*" -->
|
92
103
|
<dd>
|
93
104
|
<p>Multiplication. Knows Numeric, UNumeric, VArray, and GPhys.
|
94
105
|
The units are multipled too. (if other is Numeric, it is assumed
|
@@ -97,16 +108,16 @@ to be non-dimension)</p>
|
|
97
108
|
<ul>
|
98
109
|
<li>a UNumeric, VArray, or GPhys</li>
|
99
110
|
</ul></dd>
|
100
|
-
<dt><h4><a name="label
|
111
|
+
<dt><h4><a name="label-16" id="label-16"><code>/(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "/" -->
|
101
112
|
<dd>
|
102
|
-
|
103
|
-
<dt><h4><a name="label
|
113
|
+
Division. See <a href="#label-15">*</a>.</dd>
|
114
|
+
<dt><h4><a name="label-17" id="label-17"><code>+(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "+" -->
|
104
115
|
<dd>
|
105
116
|
<p>Addition. Knows Numeric, UNumeric, VArray, and GPhys.
|
106
117
|
The return value will have the units of <var>self</var>.</p>
|
107
118
|
<p>SPECIAL REMARK!</p>
|
108
119
|
<p>If <var>other</var> has units within a factor and/or offset
|
109
|
-
of difference, It is CONVERTED before addition (by using <a href="#label
|
120
|
+
of difference, It is CONVERTED before addition (by using <a href="#label-13">convert2</a>)!</p>
|
110
121
|
<p>RETURN VALUE</p>
|
111
122
|
<ul>
|
112
123
|
<li>a UNumeric, VArray, or GPhys</li>
|
@@ -118,9 +129,47 @@ condition is satisfied.</p>
|
|
118
129
|
<li>the units of <var>self</var> and <var>to_units</var> are incompatible.</li>
|
119
130
|
<li><var>other</var> is Numeric.</li>
|
120
131
|
</ul></dd>
|
121
|
-
<dt><h4><a name="label
|
132
|
+
<dt><h4><a name="label-18" id="label-18"><code>-(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "-" -->
|
133
|
+
<dd>
|
134
|
+
Subtraction. See <a href="#label-17">+</a>.</dd>
|
135
|
+
<dt><h4><a name="label-19" id="label-19"><code>**(<var>num</var>)</code></a></h4></dt><!-- RDLabel: "**" -->
|
136
|
+
<dd>
|
137
|
+
Power.</dd>
|
138
|
+
<dt><h4><a name="label-20" id="label-20"><code>abs</code></a></h4></dt><!-- RDLabel: "abs" -->
|
122
139
|
<dd>
|
123
|
-
|
140
|
+
Absolute value. Other math functions are also avialable as instance
|
141
|
+
methods.</dd>
|
142
|
+
<dt><h4><a name="label-21" id="label-21"><code>to_datetime(<var>eps_sec</var>=<var>0</var>.<var>0</var>)</code></a></h4></dt><!-- RDLabel: "to_datetime" -->
|
143
|
+
<dd>
|
144
|
+
<p>Convert a time UNumeric into a DateTime</p>
|
145
|
+
<p>ARGUMENTS</p>
|
146
|
+
<ul>
|
147
|
+
<li>eps_sec (Float) : Magic epsilon to prevent the round-off of
|
148
|
+
DateTime [seconds]. Recommended value is 0.1.</li>
|
149
|
+
</ul>
|
150
|
+
<p>RETURN VALUE</p>
|
151
|
+
<ul>
|
152
|
+
<li>a DateTime </li>
|
153
|
+
</ul>
|
154
|
+
<p>EXCEPTION</p>
|
155
|
+
<ul>
|
156
|
+
<li>raised if self does not have a time unit with a since field</li>
|
157
|
+
</ul></dd>
|
158
|
+
<dt><h4><a name="label-22" id="label-22"><code>strftime(<var>fmt</var>)</code></a></h4></dt><!-- RDLabel: "strftime" -->
|
159
|
+
<dd>
|
160
|
+
<p>Text expression of the date and time of a time UNumeric.
|
161
|
+
Implemented as</p>
|
162
|
+
<pre>self.to_datetime(0.1).strftime(fmt)</pre>
|
163
|
+
<p>ARGUMENTS</p>
|
164
|
+
<ul>
|
165
|
+
<li><p>fmt (Sting) : the format. Try</p>
|
166
|
+
<pre>% man 3 strftime</pre>
|
167
|
+
<p>to find how to write it.</p></li>
|
168
|
+
</ul>
|
169
|
+
<p>RETURN VALUE</p>
|
170
|
+
<ul>
|
171
|
+
<li>a String</li>
|
172
|
+
</ul></dd>
|
124
173
|
</dl>
|
125
174
|
|
126
175
|
</body>
|
data/doc/update
CHANGED
@@ -1,4 +1,4 @@
|
|
1
|
-
|
1
|
+
#!/bin/csh
|
2
2
|
|
3
3
|
set sources = ( \
|
4
4
|
../lib/numru/gphys/attribute.rb \
|
@@ -29,6 +29,7 @@ set sources = ( \
|
|
29
29
|
# ../lib/numru/gphys/varraynetcdf.rb \
|
30
30
|
### ../lib/numru/derivative.rb \
|
31
31
|
../lib/numru/ggraph.rb \
|
32
|
+
../lib/numru/dclext.rb \
|
32
33
|
../lib/numru/gdir.rb \
|
33
34
|
### ../lib/numru/ggraph_on_merdional_section.rb \
|
34
35
|
### ../lib/numru/gphys.rb \
|
data/doc/varray.html
CHANGED
@@ -7,7 +7,7 @@
|
|
7
7
|
<title>../lib/numru/gphys/varray.rb</title>
|
8
8
|
</head>
|
9
9
|
<body>
|
10
|
-
<h1><a name="label
|
10
|
+
<h1><a name="label-0" id="label-0">class NumRu::VArray</a></h1><!-- RDLabel: "class NumRu::VArray" -->
|
11
11
|
<p>VArray is a Virtual Array class, in which a multi-dimensional array data is
|
12
12
|
stored on memory (NArray, NArrayMiss) or in file (NetCDFVar etc).
|
13
13
|
The in-file data handling is left to subclasses such as VArrayNetCDF,
|
@@ -33,9 +33,9 @@ represent a NetCDFVar, which is realized by a sub-class VArrayNetCDF.</p>
|
|
33
33
|
values is restricted to a few classes for compatibility with
|
34
34
|
NetCDFAttr (See NumRu::Attribute)</li>
|
35
35
|
</ul>
|
36
|
-
<h2><a name="label
|
36
|
+
<h2><a name="label-1" id="label-1">Class Methods</a></h2><!-- RDLabel: "Class Methods" -->
|
37
37
|
<dl>
|
38
|
-
<dt><h4><a name="label
|
38
|
+
<dt><h4><a name="label-2" id="label-2"><code>VArray.new(<var>narray</var>=<var>nil</var>, <var>attr</var>=<var>nil</var>, <var>name</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "VArray.new" -->
|
39
39
|
<dd>
|
40
40
|
<p>A constructor</p>
|
41
41
|
<p>ARGUMENTS</p>
|
@@ -56,7 +56,7 @@ represent a NetCDFVar, which is realized by a sub-class VArrayNetCDF.</p>
|
|
56
56
|
<p>EXAMPLE</p>
|
57
57
|
<pre>na = NArray.int(6,3).indgen!
|
58
58
|
va1 = VArray.new( na, nil, "test" )</pre></dd>
|
59
|
-
<dt><h4><a name="label
|
59
|
+
<dt><h4><a name="label-3" id="label-3"><code>VArray.new2(<var>ntype</var>, <var>shape</var>, <var>attr</var>=<var>nil</var>, <var>name</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "VArray.new2" -->
|
60
60
|
<dd>
|
61
61
|
<p>Another constructor. Uses parameters to initialize a NArray to hold.</p>
|
62
62
|
<p>ARGUMENTS</p>
|
@@ -73,9 +73,9 @@ va1 = VArray.new( na, nil, "test" )</pre></dd>
|
|
73
73
|
<li>a VArray</li>
|
74
74
|
</ul></dd>
|
75
75
|
</dl>
|
76
|
-
<h2><a name="label
|
76
|
+
<h2><a name="label-4" id="label-4">Instance Methods</a></h2><!-- RDLabel: "Instance Methods" -->
|
77
77
|
<dl>
|
78
|
-
<dt><h4><a name="label
|
78
|
+
<dt><h4><a name="label-5" id="label-5"><code>val</code></a></h4></dt><!-- RDLabel: "val" -->
|
79
79
|
<dd>
|
80
80
|
<p>Returns the values as a NArray (or NArrayMiss).</p>
|
81
81
|
<p>This is the case even when the VArray is a mapping to another. Also,
|
@@ -85,13 +85,13 @@ this method is to be redefined in subclasses to do the same thing.</p>
|
|
85
85
|
<ul>
|
86
86
|
<li>a NArray (or NArrayMiss)</li>
|
87
87
|
</ul></dd>
|
88
|
-
<dt><h4><a name="label
|
88
|
+
<dt><h4><a name="label-6" id="label-6"><code>val=(<var>narray</var>)</code></a></h4></dt><!-- RDLabel: "val=" -->
|
89
89
|
<dd>
|
90
90
|
<p>Set values.</p>
|
91
|
-
<p>The whole values are set. If you want to set partly, use <a href="#label
|
91
|
+
<p>The whole values are set. If you want to set partly, use <a href="#label-9">[]=</a>.
|
92
92
|
In this method, values are read from narray and set into the internal
|
93
93
|
value holder. Thus, for exampled, the numeric type is not changed
|
94
|
-
regardress the numeric type of narray. Use <a href="#label
|
94
|
+
regardress the numeric type of narray. Use <a href="#label-7">replace_val</a> to
|
95
95
|
replace entirely with narray.</p>
|
96
96
|
<p>ARGUMENTS</p>
|
97
97
|
<ul>
|
@@ -99,10 +99,10 @@ replace entirely with narray.</p>
|
|
99
99
|
values are set to be equal to it. If NArray (or NArrayMiss), its
|
100
100
|
shape must agree with the shape of the VArray.</li>
|
101
101
|
</ul></dd>
|
102
|
-
<dt><h4><a name="label
|
102
|
+
<dt><h4><a name="label-7" id="label-7"><code>replace_val(<var>narray</var>)</code></a></h4></dt><!-- RDLabel: "replace_val" -->
|
103
103
|
<dd>
|
104
104
|
<p>Replace the internal array data with the object narray.
|
105
|
-
Use <a href="#label
|
105
|
+
Use <a href="#label-6">val=</a> if you want to copy the values of narray.</p>
|
106
106
|
<p>ARGUMENTS</p>
|
107
107
|
<ul>
|
108
108
|
<li>narray (NArray or NArrayMiss): as pxlained above.
|
@@ -113,16 +113,16 @@ Use <a href="#label:6">val=</a> if you want to copy the values of narray.</p>
|
|
113
113
|
<li>if (self.class == VArray), self;
|
114
114
|
otherwise (if self.class is a subclass of VArray), a new VArray.</li>
|
115
115
|
</ul></dd>
|
116
|
-
<dt><h4><a name="label
|
116
|
+
<dt><h4><a name="label-8" id="label-8"><code>[]</code></a></h4></dt><!-- RDLabel: "[]" -->
|
117
117
|
<dd>
|
118
|
-
|
119
|
-
<dt><h4><a name="label
|
118
|
+
Get a subset. Its usage is the same as NArray#[]</dd>
|
119
|
+
<dt><h4><a name="label-9" id="label-9"><code>[] = </code></a></h4></dt><!-- RDLabel: "[]=" -->
|
120
120
|
<dd>
|
121
|
-
|
122
|
-
<dt><h4><a name="label
|
121
|
+
Set a subset. Its usage is the same as NArray#[]=</dd>
|
122
|
+
<dt><h4><a name="label-10" id="label-10"><code>attr</code></a></h4></dt><!-- RDLabel: "attr" -->
|
123
123
|
<dd>
|
124
|
-
|
125
|
-
<dt><h4><a name="label
|
124
|
+
To be undefined.</dd>
|
125
|
+
<dt><h4><a name="label-11" id="label-11"><code>ntype</code></a></h4></dt><!-- RDLabel: "ntype" -->
|
126
126
|
<dd>
|
127
127
|
<p>Returns the numeric type.</p>
|
128
128
|
<p>ARGUMENTS -- none</p>
|
@@ -132,29 +132,29 @@ Use <a href="#label:6">val=</a> if you want to copy the values of narray.</p>
|
|
132
132
|
"complex", or "obj"). It can be used in NArray.new to initialize
|
133
133
|
another NArray.</li>
|
134
134
|
</ul></dd>
|
135
|
-
<dt><h4><a name="label
|
135
|
+
<dt><h4><a name="label-12" id="label-12"><code>rank</code></a></h4></dt><!-- RDLabel: "rank" -->
|
136
136
|
<dd>
|
137
|
-
|
138
|
-
<dt><h4><a name="label
|
137
|
+
Returns the rank (number of dimensions)</dd>
|
138
|
+
<dt><h4><a name="label-13" id="label-13"><code>shape</code></a></h4></dt><!-- RDLabel: "shape" -->
|
139
139
|
<dd>
|
140
|
-
|
141
|
-
<dt><h4><a name="label
|
140
|
+
Returns the shape</dd>
|
141
|
+
<dt><h4><a name="label-14" id="label-14"><code>shape_current</code></a></h4></dt><!-- RDLabel: "shape_current" -->
|
142
142
|
<dd>
|
143
|
-
|
144
|
-
<dt><h4><a name="label
|
143
|
+
aliased to <a href="#label-13">shape</a>.</dd>
|
144
|
+
<dt><h4><a name="label-15" id="label-15"><code>length</code></a></h4></dt><!-- RDLabel: "length" -->
|
145
145
|
<dd>
|
146
|
-
|
147
|
-
<dt><h4><a name="label
|
146
|
+
Returns the length of the VArray</dd>
|
147
|
+
<dt><h4><a name="label-16" id="label-16"><code>typecode</code></a></h4></dt><!-- RDLabel: "typecode" -->
|
148
148
|
<dd>
|
149
|
-
|
150
|
-
<dt><h4><a name="label
|
149
|
+
Returns the NArray typecode</dd>
|
150
|
+
<dt><h4><a name="label-17" id="label-17"><code>name</code></a></h4></dt><!-- RDLabel: "name" -->
|
151
151
|
<dd>
|
152
152
|
<p>Returns the name</p>
|
153
153
|
<p>RETURN VALUE</p>
|
154
154
|
<ul>
|
155
155
|
<li>(String) name of the VArray</li>
|
156
156
|
</ul></dd>
|
157
|
-
<dt><h4><a name="label
|
157
|
+
<dt><h4><a name="label-18" id="label-18"><code>name=(<var>nm</var>)</code></a></h4></dt><!-- RDLabel: "name=" -->
|
158
158
|
<dd>
|
159
159
|
<p>Changes the name.</p>
|
160
160
|
<p>ARGUMENTS</p>
|
@@ -165,9 +165,9 @@ Use <a href="#label:6">val=</a> if you want to copy the values of narray.</p>
|
|
165
165
|
<ul>
|
166
166
|
<li>nm</li>
|
167
167
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</ul></dd>
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<dt><h4><a name="label-19" id="label-19"><code>rename!(<var>nm</var>)</code></a></h4></dt><!-- RDLabel: "rename!" -->
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<dd>
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<p>Changes the name (Same as <a href="#label
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<p>Changes the name (Same as <a href="#label-18">name=</a>, but returns self)</p>
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<p>ARGUMENTS</p>
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<li>self</li>
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<dt><h4><a name="label-20" id="label-20"><code>rename(<var>nm</var>)</code></a></h4></dt><!-- RDLabel: "rename" -->
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<dd>
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<p>Same as rename! but duplicate the VArray object and set its name.</p>
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problematic not to change the original.</p></dd>
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<dt><h4><a name="label-21" id="label-21"><code>copy(<var>to</var>=<var>nil</var>)</code></a></h4></dt><!-- RDLabel: "copy" -->
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<dd>
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<p>Copy a VArray. If to is nil, works as the deep cloning (duplication of the entire object).</p>
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<p>Both the values and the attributes are copied.</p>
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<li>to (VArray (possibly a subclass) or nil): The VArray to which the
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copying is made.</li>
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<dt><h4><a name="label-22" id="label-22"><code>reshape!( *<var>shape</var> )</code></a></h4></dt><!-- RDLabel: "reshape!" -->
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<dd>
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<p>Changes the shape without changing the total size. May not be available in subclasses.</p>
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<p>ARGUMENTS</p>
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# This always works with a VArray subclass, since vary.copy
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# makes a deep clone to VArray with NArray.</pre></dd>
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<dt><h4><a name="label-23" id="label-23"><code>file</code></a></h4></dt><!-- RDLabel: "file" -->
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<p>Returns a file object if the data of the VArray is in a file, nil if it is on memory</p>
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<li>an object representing the file in which data are stored. Its class
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depends on the file type. nil is returned if the data is not in a file.</li>
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<dt><h4><a name="label-24" id="label-24"><code>transpose(*<var>dims</var>)</code></a></h4></dt><!-- RDLabel: "transpose" -->
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<dd>
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Transpose. Argument specification is as in NArray.</dd>
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<dt><h4><a name="label-25" id="label-25"><code>reshape(*<var>shape</var>)</code></a></h4></dt><!-- RDLabel: "reshape" -->
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Reshape. Argument specification is as in NArray.</dd>
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<dt><h4><a name="label-26" id="label-26"><code>axis_draw_positive</code></a></h4></dt><!-- RDLabel: "axis_draw_positive" -->
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<dd>
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<p>Returns the direction to plot the axis (meaningful only if self is a
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coordinate variable.) </p>
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<dt><h4><a name="label-27" id="label-27"><code>axis_cyclic?</code></a></h4></dt><!-- RDLabel: "axis_cyclic?" -->
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<dd>
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<p>Returns whether the axis is cyclic (meaningful only if self is a
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coordinate variable.) </p>
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<dt><h4><a name="label-28" id="label-28"><code>axis_modulo</code></a></h4></dt><!-- RDLabel: "axis_modulo" -->
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<dd>
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<p>Returns the modulo of a cyclic axis (meaningful only if self is a
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coordinate variable and it is cyclic.) </p>
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<li>nil if modulo is not found</li>
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<dt><h4><a name="label-29" id="label-29"><code>axis_cyclic_extendible?</code></a></h4></dt><!-- RDLabel: "axis_cyclic_extendible?" -->
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<dd>
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-
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+
(meaningful only if self is a coordinate variable.)
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Returns true if self is cyclic and it is suitable to exend
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cyclically (having the distance between both ends
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+
equal to (modulo - dx), where dx is the mean increment).</dd>
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<dt><h4><a name="label-30" id="label-30"><code>coerce(<var>other</var>)</code></a></h4></dt><!-- RDLabel: "coerce" -->
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+
<dd>
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+
For Numeric operators. (If you do not know it, see a manual or book of Ruby)</dd>
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</dl>
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<h2><a name="label
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+
<h2><a name="label-31" id="label-31">Methods compatible with NArray</a></h2><!-- RDLabel: "Methods compatible with NArray" -->
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<p>VArray is a numeric multi-dimensional array, so it supports most of the
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methods and operators in NArray. Here, the name of those methods are just
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quoted. See the documentation of NArray for their usage.</p>
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+
<h3><a name="label-32" id="label-32">Math functions</a></h3><!-- RDLabel: "Math functions" -->
|
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+
<h4><a name="label-33" id="label-33">sqrt, exp, log, log10, log2, sin, cos, tan, sinh, cosh, tanh, asin, acos, atan, asinh, acosh, atanh, csc, sec, cot, csch, sech, coth, acsc, asec, acot, acsch, asech, acoth</a></h4><!-- RDLabel: "sqrt, exp, log, log10, log2, sin, cos, tan, sinh, cosh, tanh, asin, acos, atan, asinh, acosh, atanh, csc, sec, cot, csch, sech, coth, acsc, asec, acot, acsch, asech, acoth" -->
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+
<h3><a name="label-34" id="label-34">Binary operators</a></h3><!-- RDLabel: "Binary operators" -->
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+
<h4><a name="label-35" id="label-35">-, +, *, /, %, **, .add!, .sub!, .mul!, .div!, mod!, >, >=, <, <=, &, |, ^, .eq, .ne, .gt, .ge, .lt, .le, .and, .or, .xor, .not</a></h4><!-- RDLabel: "-, +, *, /, %, **, .add!, .sub!, .mul!, .div!, mod!, >, >=, <, <=, &, |, ^, .eq, .ne, .gt, .ge, .lt, .le, .and, .or, .xor, .not" -->
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+
<h3><a name="label-36" id="label-36">Unary operators</a></h3><!-- RDLabel: "Unary operators" -->
|
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|
+
<h4><a name="label-37" id="label-37">~ - +</a></h4><!-- RDLabel: "~ - +" -->
|
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|
+
<h3><a name="label-38" id="label-38">Mean etc</a></h3><!-- RDLabel: "Mean etc" -->
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+
<h4><a name="label-39" id="label-39">mean, sum, stddev, min, max, median</a></h4><!-- RDLabel: "mean, sum, stddev, min, max, median" -->
|
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|
+
<h3><a name="label-40" id="label-40">Other methods</a></h3><!-- RDLabel: "Other methods" -->
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|
<p>These methods returns a NArray (not a VArray).</p>
|
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|
-
<h4><a name="label
|
296
|
+
<h4><a name="label-41" id="label-41">all?, any?, none?, where, where2, floor, ceil, round, to_f, to_i, to_a</a></h4><!-- RDLabel: "all?, any?, none?, where, where2, floor, ceil, round, to_f, to_i, to_a" -->
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</body>
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</html>
|