gene-matcher 0.1.3 → 0.1.4
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- checksums.yaml +4 -4
- data/lib/alignment.rb +2 -2
- data/lib/gene-matcher.rb +2 -1
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 3d31a639b4faa8f8c6b0625564377d8e43e2acd18e5aba9de696e04dd2c6de60
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4
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+
data.tar.gz: cea3e517c62db70b871dca04869622a3a5d89abaf618e0d3b36851a57ecb82fd
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: ad793ca6d4bb5e5b01bbf019e47d0835dbdbb02327683ffa68d82e10101bfb0b0b3c8202a8d0050b56cce0d9d209e03b5d045ec218b57e12fcc222f716697665
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7
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+
data.tar.gz: 87c261393441dbe6ac39ff701b2c73201beddddad184c6e0379a53aa9d25ee05609ec95a03ca7576b4c03aaf66ca0e282fedb34d5bb4a8478b1e615d9c91a128
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data/lib/alignment.rb
CHANGED
data/lib/gene-matcher.rb
CHANGED
@@ -11,9 +11,10 @@ class Matcher
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11
11
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@alignments = []
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12
12
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end
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13
13
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14
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-
def scan(target_sequence)
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14
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+
def scan(target_sequence,source = {})
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15
15
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sw = SmithWaterman.instance
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16
16
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a = sw.alignment(target_sequence, @input_sequence)
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17
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+
a.source = source
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17
18
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@alignments += [a] if a.score >= @limit
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18
19
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end
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19
20
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end
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metadata
CHANGED
@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: gene-matcher
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.1.
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4
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+
version: 0.1.4
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- ITO Yosei
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8
8
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autorequire:
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9
9
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bindir: bin
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10
10
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cert_chain: []
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11
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-
date: 2023-08-
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11
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+
date: 2023-08-31 00:00:00.000000000 Z
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12
12
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dependencies: []
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13
13
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description: Algorithm for determining similar regions between nucleic acid sequences.
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14
14
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email: y-itou@lumber-mill.co.jp
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