gene-matcher 0.1.3 → 0.1.4

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Files changed (4) hide show
  1. checksums.yaml +4 -4
  2. data/lib/alignment.rb +2 -2
  3. data/lib/gene-matcher.rb +2 -1
  4. metadata +2 -2
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data/lib/alignment.rb CHANGED
@@ -21,8 +21,8 @@ class Alignment
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  @reversed = false
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  # 逆の鎖
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  @aside = false
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- # アライメント対象配列の取得先。egtcの場合、クローンテーブルまたはアクセッションテーブル
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- @source = ""
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+ # アライメント対象配列の取得先情報(任意)。例えば、データベースのテーブル名やIDなど。
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+ @source = {}
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  end
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  def init_from_hash(h)
data/lib/gene-matcher.rb CHANGED
@@ -11,9 +11,10 @@ class Matcher
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  @alignments = []
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  end
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- def scan(target_sequence)
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+ def scan(target_sequence,source = {})
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  sw = SmithWaterman.instance
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  a = sw.alignment(target_sequence, @input_sequence)
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+ a.source = source
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  @alignments += [a] if a.score >= @limit
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  end
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  end
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: gene-matcher
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  version: !ruby/object:Gem::Version
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- version: 0.1.3
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+ version: 0.1.4
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  platform: ruby
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  authors:
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  - ITO Yosei
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2023-08-20 00:00:00.000000000 Z
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+ date: 2023-08-31 00:00:00.000000000 Z
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  dependencies: []
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  description: Algorithm for determining similar regions between nucleic acid sequences.
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  email: y-itou@lumber-mill.co.jp