gene-matcher 0.1.2 → 0.1.4
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- checksums.yaml +4 -4
- data/lib/alignment.rb +12 -12
- data/lib/gene-matcher.rb +2 -1
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 3d31a639b4faa8f8c6b0625564377d8e43e2acd18e5aba9de696e04dd2c6de60
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4
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+
data.tar.gz: cea3e517c62db70b871dca04869622a3a5d89abaf618e0d3b36851a57ecb82fd
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: ad793ca6d4bb5e5b01bbf019e47d0835dbdbb02327683ffa68d82e10101bfb0b0b3c8202a8d0050b56cce0d9d209e03b5d045ec218b57e12fcc222f716697665
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7
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+
data.tar.gz: 87c261393441dbe6ac39ff701b2c73201beddddad184c6e0379a53aa9d25ee05609ec95a03ca7576b4c03aaf66ca0e282fedb34d5bb4a8478b1e615d9c91a128
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data/lib/alignment.rb
CHANGED
@@ -21,22 +21,22 @@ class Alignment
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@reversed = false
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# 逆の鎖
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@aside = false
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-
#
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-
@source =
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24
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+
# アライメント対象配列の取得先情報(任意)。例えば、データベースのテーブル名やIDなど。
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+
@source = {}
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end
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def init_from_hash(h)
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# 引数のハッシュから初期化
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-
@score = h[
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31
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-
@alignmentI = h[
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32
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-
@alignmentJ = h[
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33
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-
@startI = h[
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34
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-
@startJ = h[
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-
@endI = h[
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-
@endJ = h[
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-
@reversed = h[
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-
@aside = h[
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-
@source = h[
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+
@score = h["score"]
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@alignmentI = h["alignmentI"]
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@alignmentJ = h["alignmentJ"]
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@startI = h["startI"]
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@startJ = h["startJ"]
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@endI = h["endI"]
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@endJ = h["endJ"]
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+
@reversed = h["reversed"]
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@aside = h["aside"]
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@source = h["source"]
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end
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# 二つの配列の一致部分と不一致部分を表した文字列を返す。
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data/lib/gene-matcher.rb
CHANGED
@@ -11,9 +11,10 @@ class Matcher
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11
11
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@alignments = []
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12
12
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end
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13
13
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14
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-
def scan(target_sequence)
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14
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+
def scan(target_sequence,source = {})
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15
15
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sw = SmithWaterman.instance
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16
16
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a = sw.alignment(target_sequence, @input_sequence)
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17
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+
a.source = source
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@alignments += [a] if a.score >= @limit
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end
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end
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metadata
CHANGED
@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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name: gene-matcher
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version: !ruby/object:Gem::Version
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4
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-
version: 0.1.
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4
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+
version: 0.1.4
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platform: ruby
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authors:
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- ITO Yosei
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autorequire:
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bindir: bin
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cert_chain: []
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11
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-
date: 2023-08-
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11
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+
date: 2023-08-31 00:00:00.000000000 Z
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dependencies: []
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description: Algorithm for determining similar regions between nucleic acid sequences.
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email: y-itou@lumber-mill.co.jp
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