gene-matcher 0.1.2 → 0.1.4

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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+  metadata.gz: 3d31a639b4faa8f8c6b0625564377d8e43e2acd18e5aba9de696e04dd2c6de60
+  data.tar.gz: cea3e517c62db70b871dca04869622a3a5d89abaf618e0d3b36851a57ecb82fd
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data/lib/alignment.rb

@@ -21,22 +21,22 @@ class Alignment
     @reversed = false
     # 逆の鎖
     @aside = false
-    # アライメント対象配列の取得先。egtcの場合、クローンテーブルまたはアクセッションテーブル
-    @source = ""
+    # アライメント対象配列の取得先情報(任意)。例えば、データベースのテーブル名やIDなど。
+    @source = {}
   end
 
   def init_from_hash(h)
     # 引数のハッシュから初期化
-    @score = h[:score]
-    @alignmentI = h[:alignmentI]
-    @alignmentJ = h[:alignmentJ]
-    @startI = h[:startI]
-    @startJ = h[:startJ]
-    @endI = h[:endI]
-    @endJ = h[:endJ]
-    @reversed = h[:reversed]
-    @aside = h[:aside]
-    @source = h[:source]
+    @score = h["score"]
+    @alignmentI = h["alignmentI"]
+    @alignmentJ = h["alignmentJ"]
+    @startI = h["startI"]
+    @startJ = h["startJ"]
+    @endI = h["endI"]
+    @endJ = h["endJ"]
+    @reversed = h["reversed"]
+    @aside = h["aside"]
+    @source = h["source"]
   end
 
   # 二つの配列の一致部分と不一致部分を表した文字列を返す。

data/lib/gene-matcher.rb

@@ -11,9 +11,10 @@ class Matcher
     @alignments = []
   end
 
-  def scan(target_sequence)
+  def scan(target_sequence,source = {})
     sw = SmithWaterman.instance
     a = sw.alignment(target_sequence, @input_sequence)
+    a.source = source
     @alignments += [a] if a.score >= @limit
   end
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: gene-matcher
 version: !ruby/object:Gem::Version
-  version: 0.1.2
+  version: 0.1.4
 platform: ruby
 authors:
 - ITO Yosei
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2023-08-20 00:00:00.000000000 Z
+date: 2023-08-31 00:00:00.000000000 Z
 dependencies: []
 description: Algorithm for determining similar regions between nucleic acid sequences.
 email: y-itou@lumber-mill.co.jp