galaaz 0.4.10 → 2.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/CHANGELOG.md +26 -0
- data/LICENSE +0 -0
- data/README.md +3123 -882
- data/Rakefile +62 -41
- data/bin/galaaz-bootstrap +137 -0
- data/bin/galaaz-jruby +14 -0
- data/bin/galaaz_jruby_env.inc.sh +6 -0
- data/bin/gbookdown +64 -0
- data/bin/gknit +223 -6
- data/bin/gknit-draft +105 -0
- data/bin/gknit-draft.rb +28 -0
- data/bin/gknit_Rscript +127 -0
- data/bin/grun +27 -1
- data/bin/gstudio +49 -4
- data/bin/{gstudio.rb → gstudio_irb.rb} +0 -0
- data/bin/gstudio_pry.rb +7 -0
- data/bin/install-tinytex +6 -0
- data/bin/run_all_rspec +43 -0
- data/bin/run_example +14 -0
- data/bin/run_old_rspec +19 -0
- data/bin/run_rspec +23 -0
- data/bin/run_rspec_subset +38 -0
- data/bin/run_slow_rspec +19 -0
- data/blogs/R-on-Rails-Planning-Document.md +940 -0
- data/blogs/README.md +100 -0
- data/blogs/galaaz_ggplot/galaaz_ggplot.Rmd +38 -66
- data/blogs/galaaz_ggplot/galaaz_ggplot.log +754 -0
- data/blogs/galaaz_ggplot/galaaz_ggplot.md +364 -0
- data/blogs/galaaz_ggplot/galaaz_ggplot.tex +607 -0
- data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-html/midwest_rb.png +0 -0
- data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-html/scatter_plot_rb.png +0 -0
- data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-markdown_github/midwest_rb.png +0 -0
- data/blogs/galaaz_ggplot/galaaz_ggplot_files/figure-markdown_github/scatter_plot_rb.png +0 -0
- data/blogs/galaaz_ggplot/midwest.Rmd +3 -3
- data/blogs/galaaz_ggplot/midwest_external_png +0 -0
- data/blogs/gknit/gknit.Rmd +52 -55
- data/blogs/gknit/gknit.md +94 -94
- data/blogs/gknit/gknit_files/figure-html/bubble-1.png +0 -0
- data/blogs/gknit/gknit_files/figure-html/diverging_bar.png +0 -0
- data/blogs/gknit/lst.rds +0 -0
- data/blogs/gknit/model.rb +1 -1
- data/blogs/gknit/stats.bib +0 -0
- data/blogs/manual/include_model_local_repro.Rmd +14 -0
- data/blogs/manual/include_model_local_repro.md +75 -0
- data/blogs/manual/lst.rds +0 -0
- data/blogs/manual/manual.Rmd +1582 -196
- data/blogs/manual/manual.log +1786 -0
- data/blogs/manual/manual.md +3107 -890
- data/blogs/manual/manual.tex +3018 -1086
- data/blogs/manual/manual_files/figure-html/bubble-1.png +0 -0
- data/blogs/manual/manual_files/figure-html/diverging_bar.png +0 -0
- data/blogs/manual/manual_files/figure-latex/bubble-1.png +0 -0
- data/blogs/manual/model.rb +41 -0
- data/blogs/nse_dplyr/nse_dplyr.Rmd +277 -151
- data/blogs/nse_dplyr/nse_dplyr.log +928 -0
- data/blogs/nse_dplyr/nse_dplyr.md +457 -293
- data/blogs/oh_my/not_so.rb +0 -0
- data/blogs/oh_my/oh_my.Rmd +1234 -25
- data/blogs/oh_my/oh_my.log +804 -0
- data/blogs/oh_my/oh_my.md +1808 -228
- data/blogs/oh_my/oh_my.tex +821 -0
- data/blogs/oh_my/old.Rmd +15 -14
- data/blogs/ruby_plot/ruby_plot.Rmd +58 -82
- data/blogs/ruby_plot/ruby_plot.log +885 -0
- data/blogs/ruby_plot/ruby_plot.md +71 -103
- data/blogs/ruby_plot/ruby_plot.tex +940 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-html/dose_len.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-html/facet_by_delivery.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-html/facet_by_dose.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_by_delivery_color.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_by_delivery_color2.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_decorations.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_jitter.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-html/facets_with_points.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-html/final_box_plot.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-html/final_violin_plot.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-html/violin_with_jitter.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-latex/dose_len.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-latex/facet_by_delivery.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-latex/facet_by_dose.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_by_delivery_color.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_by_delivery_color2.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_with_decorations.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_with_jitter.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-latex/facets_with_points.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-latex/final_box_plot.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-latex/final_violin_plot.png +0 -0
- data/blogs/ruby_plot/ruby_plot_files/figure-latex/violin_with_jitter.png +0 -0
- data/blogs/test/test.Rmd +14 -0
- data/examples/50Plots_MasterList/Images/midwest-scatterplot.PNG +0 -0
- data/examples/50Plots_MasterList/ScatterPlot.rb +0 -0
- data/examples/50Plots_MasterList/scatter_plot.rb +0 -0
- data/examples/Bibliography/master.bib +50 -0
- data/examples/Bibliography/stats.bib +72 -0
- data/examples/R/calc.R +0 -0
- data/examples/R/java_interop.R +0 -0
- data/examples/bioconductor_deseq2_airway/Documentation/DESeq2-airway-walkthrough.md +56 -0
- data/examples/bioconductor_deseq2_airway/bench_galaaz_three_same_process.rb +53 -0
- data/examples/bioconductor_deseq2_airway/bench_r_three_same_process.R +34 -0
- data/examples/bioconductor_deseq2_airway/deseq2_airway_galaaz.rb +33 -0
- data/examples/bioconductor_deseq2_airway/deseq2_airway_galaaz_optimized.rb +34 -0
- data/examples/bioconductor_deseq2_airway/deseq2_airway_minimal.R +30 -0
- data/examples/bioconductor_deseq2_airway/deseq2_airway_pipeline_for_bench.R +36 -0
- data/examples/islr/all.rb +13 -0
- data/examples/islr/ch2.spec.rb +37 -7
- data/examples/islr/ch3.spec.rb +11 -2
- data/examples/islr/ch3_boston.rb +27 -0
- data/examples/islr/ch3_multiple_regression.rb +0 -0
- data/examples/islr/ch6.spec.rb +24 -1
- data/examples/islr/x_y_rnorm.jpg +0 -0
- data/examples/latex_templates/Test-acm_article/Makefile +16 -0
- data/examples/latex_templates/Test-acm_article/Test-acm_article.Rmd +65 -0
- data/examples/latex_templates/Test-acm_article/acm_proc_article-sp.cls +1670 -0
- data/examples/latex_templates/Test-acm_article/sensys-abstract.cls +703 -0
- data/examples/latex_templates/Test-acm_article/sigproc.bib +59 -0
- data/examples/latex_templates/Test-acs_article/Test-acs_article.Rmd +260 -0
- data/examples/latex_templates/Test-acs_article/acs-Test-acs_article.bib +11 -0
- data/examples/latex_templates/Test-acs_article/acs-my_output.bib +11 -0
- data/examples/latex_templates/Test-acs_article/acstest.bib +17 -0
- data/examples/latex_templates/Test-aea_article/AEA.cls +1414 -0
- data/{blogs/gknit/marshal.dump → examples/latex_templates/Test-aea_article/BibFile.bib} +0 -0
- data/examples/latex_templates/Test-aea_article/Test-aea_article.Rmd +108 -0
- data/examples/latex_templates/Test-aea_article/aea.bst +1269 -0
- data/examples/latex_templates/Test-aea_article/multicol.sty +853 -0
- data/examples/latex_templates/Test-aea_article/references.bib +0 -0
- data/examples/latex_templates/Test-aea_article/setspace.sty +546 -0
- data/examples/latex_templates/Test-amq_article/Test-amq_article.Rmd +256 -0
- data/examples/latex_templates/Test-amq_article/Test-amq_article.pdfsync +3397 -0
- data/examples/latex_templates/Test-ams_article/Test-ams_article.Rmd +215 -0
- data/examples/latex_templates/Test-ams_article/amstest.bib +436 -0
- data/examples/latex_templates/Test-asa_article/Test-asa_article.Rmd +153 -0
- data/examples/latex_templates/Test-asa_article/agsm.bst +1353 -0
- data/examples/latex_templates/Test-asa_article/bibliography.bib +233 -0
- data/examples/latex_templates/Test-ieee_article/IEEEtran.bst +2409 -0
- data/examples/latex_templates/Test-ieee_article/IEEEtran.cls +6346 -0
- data/examples/latex_templates/Test-ieee_article/Test-ieee_article.Rmd +175 -0
- data/examples/latex_templates/Test-ieee_article/mybibfile.bib +20 -0
- data/examples/latex_templates/Test-rjournal_article/RJournal.sty +335 -0
- data/examples/latex_templates/Test-rjournal_article/RJreferences.bib +18 -0
- data/examples/latex_templates/Test-rjournal_article/Test-rjournal_article.Rmd +52 -0
- data/examples/latex_templates/Test-springer_article/Test-springer_article.Rmd +65 -0
- data/examples/latex_templates/Test-springer_article/bibliography.bib +26 -0
- data/examples/latex_templates/Test-springer_article/spbasic.bst +1658 -0
- data/examples/latex_templates/Test-springer_article/spmpsci.bst +1512 -0
- data/examples/latex_templates/Test-springer_article/spphys.bst +1443 -0
- data/examples/latex_templates/Test-springer_article/svglov3.clo +113 -0
- data/examples/latex_templates/Test-springer_article/svjour3.cls +1431 -0
- data/examples/misc/baseball.csv +0 -0
- data/examples/misc/ggplot.rb +3 -2
- data/examples/misc/moneyball.rb +0 -0
- data/examples/misc/subsetting.rb +0 -0
- data/examples/multithread_shards_to_r/shards_to_r.rb +67 -0
- data/examples/rmarkdown/svm-rmarkdown-anon-ms-example/svm-rmarkdown-anon-ms-example.Rmd +73 -0
- data/examples/rmarkdown/svm-rmarkdown-article-example/svm-rmarkdown-article-example.Rmd +382 -0
- data/examples/rmarkdown/svm-rmarkdown-beamer-example/svm-rmarkdown-beamer-example.Rmd +164 -0
- data/examples/rmarkdown/svm-rmarkdown-cv/svm-rmarkdown-cv.Rmd +92 -0
- data/examples/rmarkdown/svm-rmarkdown-syllabus-example/attend-grade-relationships.csv +482 -0
- data/examples/rmarkdown/svm-rmarkdown-syllabus-example/svm-rmarkdown-syllabus-example.Rmd +280 -0
- data/examples/rmarkdown/svm-xaringan-example/svm-xaringan-example.Rmd +386 -0
- data/examples/sthda_ggplot/README.md +0 -0
- data/examples/sthda_ggplot/RUN.md +41 -0
- data/examples/sthda_ggplot/all.rb +0 -0
- data/examples/sthda_ggplot/one_variable_continuous/density_gg.rb +0 -0
- data/examples/sthda_ggplot/one_variable_continuous/geom_area.rb +0 -0
- data/examples/sthda_ggplot/one_variable_continuous/geom_density.rb +2 -0
- data/examples/sthda_ggplot/one_variable_continuous/geom_dotplot.rb +0 -0
- data/examples/sthda_ggplot/one_variable_continuous/geom_freqpoly.rb +0 -0
- data/examples/sthda_ggplot/one_variable_continuous/geom_histogram.rb +0 -0
- data/examples/sthda_ggplot/one_variable_continuous/histogram_density.rb +0 -0
- data/examples/sthda_ggplot/one_variable_continuous/stat.rb +0 -0
- data/examples/sthda_ggplot/one_variable_discrete/bar.rb +0 -0
- data/examples/sthda_ggplot/qplots/box_violin_dot.rb +0 -0
- data/examples/sthda_ggplot/qplots/scatter_plots.rb +0 -0
- data/examples/sthda_ggplot/scatter_gg.rb +0 -0
- data/examples/sthda_ggplot/two_variables_cont_bivariate/geom_bin2d.rb +0 -0
- data/examples/sthda_ggplot/two_variables_cont_bivariate/geom_density2d.rb +0 -0
- data/examples/sthda_ggplot/two_variables_cont_bivariate/geom_hex.rb +0 -0
- data/examples/sthda_ggplot/two_variables_cont_cont/geom_point.rb +0 -0
- data/examples/sthda_ggplot/two_variables_cont_cont/geom_smooth.rb +0 -0
- data/examples/sthda_ggplot/two_variables_cont_cont/misc.rb +0 -0
- data/examples/sthda_ggplot/two_variables_cont_function/geom_area.rb +4 -3
- data/examples/sthda_ggplot/two_variables_disc_cont/geom_bar.rb +0 -0
- data/examples/sthda_ggplot/two_variables_disc_cont/geom_boxplot.rb +0 -0
- data/examples/sthda_ggplot/two_variables_disc_cont/geom_dotplot.rb +0 -0
- data/examples/sthda_ggplot/two_variables_disc_cont/geom_jitter.rb +0 -0
- data/examples/sthda_ggplot/two_variables_disc_cont/geom_line.rb +0 -0
- data/examples/sthda_ggplot/two_variables_disc_cont/geom_violin.rb +0 -0
- data/examples/sthda_ggplot/two_variables_disc_disc/geom_jitter.rb +0 -0
- data/examples/sthda_ggplot/two_variables_error/geom_crossbar.rb +0 -0
- data/ext/new_bridge/Makefile +46 -0
- data/ext/new_bridge/galaaz_gatekeeper_phase0.cpp +12 -0
- data/ext/new_bridge/galaaz_gatekeeper_phase1.cpp +1639 -0
- data/lib/R_interface/galaaz_device.R +20 -0
- data/lib/R_interface/include_engine.R +109 -0
- data/lib/R_interface/new_bridge_adapter.rb +824 -0
- data/lib/R_interface/r.rb +177 -25
- data/lib/R_interface/r_arrow.rb +113 -0
- data/lib/R_interface/r_libs.R +4 -4
- data/lib/R_interface/r_methods.rb +13 -116
- data/lib/R_interface/r_module_s.rb +0 -0
- data/lib/R_interface/rbinary_operators.rb +20 -2
- data/lib/R_interface/rclosure.rb +5 -1
- data/lib/R_interface/rdata_frame.rb +34 -70
- data/lib/R_interface/rdevice.rb +125 -0
- data/lib/R_interface/rdevices.R +0 -0
- data/lib/R_interface/renvironment.rb +10 -4
- data/lib/R_interface/rexpression.rb +5 -1
- data/lib/R_interface/rindexed_object.rb +41 -13
- data/lib/R_interface/rlanguage.rb +20 -62
- data/lib/R_interface/rlist.rb +115 -25
- data/lib/R_interface/rlogical_operators.rb +0 -0
- data/lib/R_interface/rmatrix.rb +2 -11
- data/lib/R_interface/rmd_indexed_object.rb +5 -1
- data/lib/R_interface/robject.rb +348 -290
- data/lib/R_interface/rpkg.rb +1 -0
- data/lib/R_interface/rsupport.rb +610 -331
- data/lib/R_interface/rsupport_scope.rb +2 -1
- data/lib/R_interface/rsymbol.rb +50 -0
- data/lib/R_interface/ruby_callback.rb +2 -3
- data/lib/R_interface/ruby_extensions.rb +225 -175
- data/lib/R_interface/runary_operators.rb +0 -0
- data/lib/R_interface/rvector.rb +147 -31
- data/lib/galaaz.rb +0 -0
- data/lib/galaaz_jruby.rb +22 -0
- data/lib/gknit/diagnostics.rb +50 -0
- data/lib/gknit/draft.rb +111 -0
- data/lib/gknit/include_engine.rb +15 -7
- data/lib/gknit/knitr_engine.rb +223 -107
- data/lib/gknit/rb_engine.rb +3 -3
- data/lib/gknit/ruby_engine.rb +0 -0
- data/lib/gknit.rb +3 -0
- data/lib/new_bridge/bootstrap/windows_bootstrap.rb +285 -0
- data/lib/new_bridge/envelope.rb +51 -0
- data/lib/new_bridge/eval_result.rb +26 -0
- data/lib/new_bridge/framing.rb +39 -0
- data/lib/new_bridge/instance_pool_client.rb +38 -0
- data/lib/new_bridge/r_instance_manager.rb +404 -0
- data/lib/new_bridge/session_client.rb +530 -0
- data/lib/new_bridge/tcp_framed.rb +44 -0
- data/lib/new_bridge.rb +9 -0
- data/lib/util/exec_ruby.rb +95 -46
- data/lib/util/inline_file.rb +35 -30
- data/new_bridge_specs/benchmark_phase5_5_unboxing_spec.rb +96 -0
- data/new_bridge_specs/eval_r_async_spec.rb +113 -0
- data/new_bridge_specs/integration_phase5_1_concurrent_spec.rb +50 -0
- data/new_bridge_specs/integration_phase5_1_eval_spec.rb +16 -0
- data/new_bridge_specs/integration_phase5_1_r_api_spec.rb +25 -0
- data/new_bridge_specs/integration_phase5_1_smoke_spec.rb +31 -0
- data/new_bridge_specs/integration_phase5_2_dataframe_unboxing_spec.rb +19 -0
- data/new_bridge_specs/integration_phase5_2_handle_eval_unboxing_spec.rb +25 -0
- data/new_bridge_specs/integration_phase5_3_callback_args_spec.rb +28 -0
- data/new_bridge_specs/integration_phase5_3_callback_error_spec.rb +22 -0
- data/new_bridge_specs/integration_phase5_3_callback_timeout_spec.rb +28 -0
- data/new_bridge_specs/integration_phase5_3_callbacks_smoke_spec.rb +22 -0
- data/new_bridge_specs/integration_phase5_3_edge_cases_spec.rb +52 -0
- data/new_bridge_specs/integration_phase5_3_nested_spec.rb +30 -0
- data/new_bridge_specs/integration_phase5_4_concurrent_sessions_spec.rb +53 -0
- data/new_bridge_specs/integration_phase5_4_nested_session_callbacks_spec.rb +49 -0
- data/new_bridge_specs/integration_phase5_4_session_routing_spec.rb +38 -0
- data/new_bridge_specs/integration_phase5_5_stress_concurrency_spec.rb +52 -0
- data/new_bridge_specs/integration_phase5_5_unbox_walk_spec.rb +46 -0
- data/new_bridge_specs/phase0_protocol_spec.rb +96 -0
- data/new_bridge_specs/phase1_req_ret_spec.rb +66 -0
- data/new_bridge_specs/phase2_multi_instance_spec.rb +67 -0
- data/new_bridge_specs/phase3_callbacks_spec.rb +71 -0
- data/new_bridge_specs/phase4_2_hardening_spec.rb +252 -0
- data/new_bridge_specs/phase4_3_r_instance_manager_spec.rb +85 -0
- data/new_bridge_specs/phase4_nested_callbacks_spec.rb +123 -0
- data/r_requires/ggplot.rb +0 -0
- data/r_requires/knitr.rb +0 -0
- data/specs/all.rb +15 -11
- data/specs/arrow_from_ruby_batches_spec.rb +50 -0
- data/specs/arrow_semantics_spec.rb +64 -0
- data/specs/bridge_concurrent_spec.rb +46 -0
- data/specs/bridge_nested_spec.rb +25 -0
- data/specs/dataframe_semantics_spec.rb +122 -0
- data/specs/dataframe_single_index_logical_filter_spec.rb +21 -0
- data/specs/dispatch_probe_cache_spec.rb +38 -0
- data/specs/dispatch_probe_error_class_fallback_spec.rb +20 -0
- data/specs/dispatch_probe_fallback_spec.rb +18 -0
- data/specs/environment_semantics_spec.rb +89 -0
- data/specs/field_access_spec.rb +31 -0
- data/specs/figures/bg.jpeg +0 -0
- data/specs/figures/bg.png +0 -0
- data/specs/figures/bg.svg +168 -57
- data/specs/figures/dose_len.png +0 -0
- data/specs/figures/no_args.jpeg +0 -0
- data/specs/figures/no_args.png +0 -0
- data/specs/figures/no_args.svg +168 -57
- data/specs/figures/width_height.jpeg +0 -0
- data/specs/figures/width_height.png +0 -0
- data/specs/figures/width_height_units1.jpeg +0 -0
- data/specs/figures/width_height_units1.png +0 -0
- data/specs/figures/width_height_units2.jpeg +0 -0
- data/specs/figures/width_height_units2.png +0 -0
- data/specs/formula_semantics_spec.rb +81 -0
- data/specs/galaaz_util_exec_ruby_spec.rb +85 -0
- data/specs/galaaz_util_inline_file_spec.rb +54 -0
- data/specs/gknit_cli_option_permutation_spec.rb +24 -0
- data/specs/gknit_include_engine_spec.rb +72 -0
- data/specs/gknit_install_timeout_report_spec.rb +69 -0
- data/specs/gknit_internal_error_report_spec.rb +57 -0
- data/specs/gknit_vector_map_output_spec.rb +59 -0
- data/specs/globalenv_guardrail_spec.rb +52 -0
- data/specs/language_expression_semantics_spec.rb +145 -0
- data/specs/list_semantics_spec.rb +111 -0
- data/specs/new_bridge_bulk_dataframe_transfer_spec.rb +44 -0
- data/specs/new_bridge_bulk_vector_transfer_spec.rb +73 -0
- data/specs/new_bridge_callback_timeout_spec.rb +69 -0
- data/specs/new_bridge_eval_r_fallback_spec.rb +55 -0
- data/specs/nil_null_spec.rb +42 -0
- data/specs/object_build_phase2_spec.rb +53 -0
- data/specs/phase1_callback_bridge_spec.rb +84 -0
- data/specs/phase2_gknit_generic_rendering_guardrail_spec.rb +46 -0
- data/specs/phase2_gknit_no_raw_code_leakage_spec.rb +43 -0
- data/specs/phase3_gknit_generic_graphics_capture_spec.rb +71 -0
- data/specs/plot_device_semantics_spec.rb +28 -0
- data/specs/plot_snapshot_semantics_spec.rb +58 -0
- data/specs/protocol_result_spec.rb +236 -0
- data/specs/r_batch_fail_fast_spec.rb +47 -0
- data/specs/r_bridge_bootstrap_spec.rb +11 -0
- data/specs/r_devices.spec.rb +1 -1
- data/specs/r_eval.spec.rb +16 -18
- data/specs/r_function.spec.rb +1 -1
- data/specs/r_instance_manager_spec.rb +285 -0
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- data/specs/r_matrix.spec.rb +0 -0
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- data/specs/r_vector_comparator_spec.rb +8 -0
- data/specs/r_vector_creation.spec.rb +0 -0
- data/specs/r_vector_functions.spec.rb +0 -0
- data/specs/r_vector_object.spec.rb +0 -0
- data/specs/r_vector_operators.spec.rb +0 -0
- data/specs/r_vector_structured_scalar_reads_spec.rb +35 -0
- data/specs/r_vector_subsetting.spec.rb +0 -0
- data/specs/range_helper_spec.rb +21 -0
- data/specs/rsupport_scope_spec.rb +28 -0
- data/specs/rsupport_var_name_thread_safety_spec.rb +24 -0
- data/specs/scalar_character_spec.rb +44 -0
- data/specs/scoped_symbol_dsl_refinement_spec.rb +40 -0
- data/specs/session_env_bridge_spec.rb +25 -0
- data/specs/simplecov_bootstrap_spec.rb +10 -0
- data/specs/spec_helper.rb +10 -0
- data/specs/tmp.rb +41 -20
- data/specs/unboxing_recursion_regression_spec.rb +30 -0
- data/specs/unboxing_spec.rb +49 -0
- data/specs/verify_callbacks.rb +42 -0
- data/sty/galaaz.sty +0 -0
- data/version.rb +1 -1
- metadata +239 -71
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- data/examples/paper/paper.rb +0 -36
- data/specs/r_dataframe.spec.rb +0 -379
- data/specs/r_environment.spec.rb +0 -140
- data/specs/r_formula.spec.rb +0 -232
- data/specs/r_language.spec.rb +0 -112
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---
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title: An Example R Markdown Document
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subtitle: (A Subtitle Would Go Here if This Were a Class)
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author: Steven V. Miller
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institute: Department of Political Science
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---
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<style>
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</style>
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# Pop Songs and Political Science
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## Sheena Easton and Game Theory
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Sheena Easton describes the following scenario for her baby:
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1. Takes the morning train
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2. Works from nine 'til five
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3. Takes another train home again
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4. Finds Sheena Easton waiting for him
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Sheena Easton and her baby are playing a **zero-sum (total conflict) game**.
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- Akin to Holmes-Moriarty game (see: von Neumann and Morgenstern)
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- Solution: **mixed strategy**
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## Rick Astley's Re-election Platform
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Rick Astley's campaign promises:
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- Never gonna give you up.
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- Never gonna let you down.
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- Never gonna run around and desert you.
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- Never gonna make you cry.
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- Never gonna say goodbye.
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- Never gonna tell a lie and hurt you.
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Congressman Astley to secure re-election.
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## Caribbean Queen and Operation Urgent Fury
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Billy Ocean released "Caribbean Queen" in 1984.
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- Emphasized sharing the same dream
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- Hearts beating as one
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"Caribbean Queen" is about the poor execution of Operation Urgent Fury.
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- Echoed JCS chairman David Jones' frustrations with military establishment.
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Billy Ocean is advocating for what became the Goldwater-Nichols Act.
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- Wanted to take advantage of **economies of scale**, resolve **coordination problems** in U.S. military.
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## The Good Day Hypothesis
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We know the following about Ice Cube's day.
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1. The Lakers beat the Supersonics.
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2. No helicopter looked for a murder.
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3. Consumed Fatburger at 2 a.m.
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4. Goodyear blimp: "Ice Cube's a pimp."
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This leads to two different hypotheses:
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- $H_0$: Ice Cube's day is statistically indistinguishable from a typical day.
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- $H_1$: Ice Cube is having a good (i.e. greater than average) day.
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These hypotheses are tested using archival data of Ice Cube's life.
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# Example R code
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## Example R stuff
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```{r cars, echo = TRUE}
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summary(cars)
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```
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## Slide with Plot
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```{r pressure}
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# plot(pressure)
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# function plot is not available in fastR -- should use ggplot
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```
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## ggplot code
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```{r createdata, dev = "png", echo=TRUE, eval=FALSE}
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```
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## Another Plot
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```{r plotit, dev = "png", echo=FALSE}
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library(ggplot2)
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```
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output:
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pdf_document:
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latex_engine: pdflatex
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template: /home/rbotafogo/desenv/galaaz/sty/svm-r-markdown-templates/svm-latex-cv.tex
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geometry: margin=1in
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title: "CV"
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author: William Sealy Gosset
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jobtitle: "Chief Brewer, Arthur Guinness & Son"
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address: "Guinness Brewery · Park Royal · London NW10 7RR, UK"
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fontawesome: yes
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email: guinness@consumer-care.net
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# github: svmiller
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# twitter: stevenvmiller
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#osf: "Enter 5 digit osf string here"
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phone: "+353 1 408 4800"
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web: guinness.com
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updated: no
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keywords: R Markdown, academic CV, template
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fontfamilyoptions: sc, osf
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fontsize: 11pt
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linkcolor: blue
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urlcolor: blue
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---
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# Employment
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*Arthur Guinness & Son*
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Chief Brewer (Park Royal) \hfill 1935-1937
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Researcher (Dublin) \hfill 1899-1935
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# Education
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*New College, Oxford University*, B.A. Chemistry \hfill 1899
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# Publications
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## Books
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Pearson, E.S. and John Wishart (eds.). 1943. *"Student's" Collected Papers* London: Biometrika Office.
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## Journal Articles
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Student. 1938. "Comparison between Balanced and Random Arrangements on Field Plots." *Biometrika* 29(3-4): 363--378.
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Student. 1936. "Co-operation in Large Scale Experiments." *Supplement to Journal of the Royal Statistical Society* 3(2): 115--136.
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Student. 1931. "On the *z* Test." *Biometrika* 23(3-4): 407-408.
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Student. 1931. "The Lanarkshire Milk Experiment." *Biometrika* 23(3-4): 398--406.
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Student. 1929. "Statistics in Biological Research." *Nature* 124: 93
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Student. 1927. "Errors of Routine Analysis." *Biometrika* 19(1-2): 151--164.
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Student. 1926. "Mathematics and Agronomy." *Journal of the American Society of Agronomy* 18.
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Student. 1925. "New Tables for Testing the Significance of Observations." *Metron* 5(3): 105--108.
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Student. 1923. "On Testing Varieties of Cereals." *Biometrika* 15(3-4): 271--293.
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Student. 1921. "An Experimental Determination of the Probable Error of Dr. Spearman's Correlation Co-efficient" *Biometrika* 13(2-3): 263--282.
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Student. 1917. "Tables for Estimating the Probability That the Given Mean of a Unique Sample of Observations Lies between $-\infty$ and Any Given Distance of the Mean of the Population from Which the Sample Is Drawn." *Biometrika* 11(4): 414--417.
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Student. 1909. "The Distribution of the Means of Samples Which Are Not Drawn at Random." *Biometrika* 7(1-2): 210--214.
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Student. 1908. "Probable Error of a Correlation Coefficient." *Biometrika* 6(2-3): 302--310.
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Student. 1908. "The Probable Error of a Mean." *Biometrika* 6(1): 1--25.
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Student. 1907. "On the Error of Counting with a Haemacytometer." *Biometrika* 5(3): 351--360.
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## Other Publications
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Student. 1905. "The Pearson Co-efficient of Correlation." Supplement to Report of 1904, Arthur Guinness Son & Company.
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Student. 1904. "The Application of the 'Law of Error' to the Work of the Brewery." Report, Arthur Guinness Son & Company.
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# References
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Available upon request, though likely would include Karl Pearson and Ronald A. Fisher. Please
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send corrections, feedback, or details of missed publications (of which there are probably
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a few) to svmille@clemson.edu.
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