finishm 0.0.8 → 0.0.9
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- checksums.yaml +4 -4
- data/Rakefile +2 -1
- data/VERSION +1 -1
- data/bin/finishm +18 -18
- data/ext/mkrf_conf.rb +1 -1
- data/finishm.gemspec +23 -19
- data/lib/finishm/connect.rb +65 -0
- data/lib/priner.rb +3 -3
- data/spec/data/gapfilling/5/a.svg +1118 -0
- data/spec/data/gapfilling/5/reads.faVanswer.bam +0 -0
- data/spec/data/gapfilling/5/reads.faVanswer.bam.bai +0 -0
- data/spec/data/gapfilling/5/reads2.fa +17961 -0
- data/spec/data/gapfilling/5/to_gapfill.fa +2 -0
- data/spec/data/gapfilling/5/velvet23_3.5/Graph2 +8758 -0
- data/spec/data/gapfilling/5/velvet23_3.5/LastGraph +8337 -0
- data/spec/data/gapfilling/5/velvet23_3.5/Log +210 -0
- data/spec/data/gapfilling/5/velvet23_3.5/PreGraph +303 -0
- data/spec/data/gapfilling/5/velvet23_3.5/Roadmaps +20440 -0
- data/spec/data/gapfilling/5/velvet23_3.5/Sequences +20921 -0
- data/spec/data/gapfilling/5/velvet23_3.5/contigs.fa +296 -0
- data/spec/data/gapfilling/5/velvet23_3.5/stats.txt +100 -0
- data/spec/data/visualise/2_paired_end/a.svg +59 -0
- data/spec/data/wander/1/reference.broken.fa +4 -0
- data/spec/data/wander/1/reference.fa +2 -0
- data/spec/data/wander/1/reference_reads.fa +2004 -0
- metadata +23 -20
- data/ext/src/third-party/zlib-1.2.3/adler32.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/compress.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/crc32.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/deflate.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/example +0 -0
- data/ext/src/third-party/zlib-1.2.3/gzio.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/infback.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/inffast.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/inflate.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/inftrees.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/libz.a +0 -0
- data/ext/src/third-party/zlib-1.2.3/minigzip +0 -0
- data/ext/src/third-party/zlib-1.2.3/trees.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/uncompr.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.o +0 -0
@@ -0,0 +1,296 @@
|
|
1
|
+
>NODE_1_length_131_cov_18.167938
|
2
|
+
ACATGCCGGATTCGCTGAAGGCGCAGCATACGGCGTATCTCACCACCGGCAATGTCTGCT
|
3
|
+
ATTCCGACATGGGCCGCGTCATGTGCTCCATCATTGGCGATAGTGTGGGCTGGCACGATA
|
4
|
+
CCTTCTGCGGAGTGACCGATGCCGCCATGATCGAAGCCCAGTATGGCAAGGCCACGTTTC
|
5
|
+
A
|
6
|
+
>NODE_2_length_51_cov_71.372551
|
7
|
+
GTGACCGATGCCGCCATGATCGAAGCCCAGTATGGCAAGGCCACGTTTCAGACCCACCGC
|
8
|
+
AATGCCATGCACCGCAGCGGCAAGGATGGCCTGCTGGTGGA
|
9
|
+
>NODE_3_length_87_cov_43.356323
|
10
|
+
ACCCACCGCAATGCCATGCACCGCAGCGGCAAGGATGGCCTGCTGGTGGAGCTGGCGAAA
|
11
|
+
TACGGTCTGGGCAAGCGCGACCTGGTCGCCAACGTCAATTTTTTCAGCAAGGCGGTGCCG
|
12
|
+
GATGACAACGGTGCGCT
|
13
|
+
>NODE_4_length_204_cov_44.617645
|
14
|
+
TTGCTCTCAGCGGCACAGGCCCCGCCCAGGGTATCGTGGCGGCCACAGGTGTCCGCGGTG
|
15
|
+
ATGGTCAGCATGGGCCGGCCTTCATTTGAATACAGCACCGAGCCGGTGGTGAGGTAAAGC
|
16
|
+
TGGCGCTGGCGGGCAATGGTGTCTACCGCGCTGTAGCGCTCTTCGGGATCAGCGGCACTG
|
17
|
+
TAAAAAAGCGTATCCACCGCCTGGTTGCCTTCCAGGTCCAGAATGCGGAATATCTGGCCT
|
18
|
+
TTCTTCACTTCGGC
|
19
|
+
>NODE_5_length_54_cov_25.037037
|
20
|
+
GCGGCTTCCACGTATTTTTCCAGATAAAGGCCGGATTCCTTGAAATTGGCGCGTGACAGG
|
21
|
+
CGCTGCACCGAGGCAAAGGCTTCGGCCAGTTCCTCTTCGCCCCA
|
22
|
+
>NODE_7_length_102_cov_27.735294
|
23
|
+
GCAAAGGCTTCGGCCAGTTCCTCTTCGCCCCAGATCAGGCGCATGCCGATGCCGCCACCA
|
24
|
+
CCCGCCGTGCTCTTCAGCATCACCGGGTAGCCGATGCGTGCGGCATGCGTGCGGGCTTCG
|
25
|
+
GCGACATCTGCCAGCAGGCCGGTGCCCGGCAG
|
26
|
+
>NODE_8_length_237_cov_29.637131
|
27
|
+
ACAAGGTTAGTCATGTTTCATAAAGTGCTTATTGCGAACCGCGGCGAGATCGCTTGCCGC
|
28
|
+
ATCATTCGTACCCTCAAGCAGCTTGGTGTCCGCTCAGTAGCCGTCTATTCCGAAGCCGAT
|
29
|
+
GCCGGTGCACGGCATGTGCTGGAGGCGGATGAGGCTGTCTGCGTCGGTCCGGCGCCCGCC
|
30
|
+
GCCGAGAGTTACCTGAATATTCCCGCCATTCTGCAAGCGGCGCACCAGACTGGTGCGCAA
|
31
|
+
GCCATCCATCCGGGCTATGGCTTTCTGTCTGAAAACCCCGGCTTTGC
|
32
|
+
>NODE_9_length_51_cov_28.039215
|
33
|
+
ATGCGTGCGGGCTTCGGCGACATCTGCCAGCAGGCCGGTGCCCGGCAGCAGTGGCACGCC
|
34
|
+
ATTGGCCTCGGCCAGCGCGCGGGCGGTGTGCTTGAGACCAA
|
35
|
+
>NODE_11_length_51_cov_20.803921
|
36
|
+
GGCACGCCATTGGCCTCGGCCAGCGCGCGGGCGGTGTGCTTGAGACCAAAGTCACGCATC
|
37
|
+
TGTTGGGGAGTGGGGCCGATAAAGGCAATGCCTGCGGCTTC
|
38
|
+
>NODE_12_length_288_cov_25.437500
|
39
|
+
TTCTTCCGTTACATGGCCAAGCACTACGCCAAGGAAGAGGGCCTGCTGGCAACCATGATG
|
40
|
+
CCCAAGCCGTTTGCCGACAAGACCGGCACCGGCGCGCACTTCAACATGTCGCTGTACGAC
|
41
|
+
CTCAAGACTGGCAAGAACCTGTTTGCCTGCGACCCCAAGGATGATCCACGCGGCCTGGGC
|
42
|
+
CTGACCACATTGGGCTACCAGTTCATCGCCGGTATCCTCAAGCACGGCCCGGCCCTGTGC
|
43
|
+
GCGGCCTTTGCGCCTACGGTCAACAGCTACAAGCGCCTGGTGCGCCGCGGTGCCATGAGC
|
44
|
+
TACTTCAGCTGGGCGCCGGTATTCAACTCCTACGGCTC
|
45
|
+
>NODE_13_length_91_cov_21.835165
|
46
|
+
GTGGTAGGTTTCCCATTCCTGGCTCTTGTAGGTGACAAACTCGTCACGCAACTCCTTGCC
|
47
|
+
CAGGGTTTTTTCCACCAGCGGATCGGCAGCGAATGCCTCAACCGCTTCCTGCAGGGTTTG
|
48
|
+
CGGCAGGAATTGAATGCCACG
|
49
|
+
>NODE_15_length_51_cov_25.176470
|
50
|
+
GGCAGGAATTGAATGCCACGGCCCATGCGCTCTTCTTCGCTGATGGCGTAGAGGTTGTCT
|
51
|
+
TCGTTCGGTGCACCTGGGTCCAGCTGCTCGCGTATGCCTTC
|
52
|
+
>NODE_16_length_129_cov_28.604650
|
53
|
+
TTGATGGCGGTCGCCATCTTGTCCAGCCAGCCGAAGTTATCCATAAAGCCACGCACGTCG
|
54
|
+
TAGCAAGGCTTCACCAGCTTGTCATCGGGGTTAGGGATAGACAGATTGCCATCGGCTTCC
|
55
|
+
TGCTTCAGCAGGTAAATCTCGCACTCAATGCCGAGGTTCATGCCAAAGCCCATTTCAGC
|
56
|
+
>NODE_18_length_105_cov_26.990477
|
57
|
+
TCTTCGTTCGGTGCACCTGGGTCCAGCTGCTCGCGTATGCCTTCCAGACCGGCGGCCAAT
|
58
|
+
GCCAGCGTGGCAGCCAGATAAGGGTTCACGGCGCCATCCGCATTCCGGGATTCACAACGG
|
59
|
+
CCACCGCCCATGGGCACGCGTACCGAGTTGGTACG
|
60
|
+
>NODE_19_length_96_cov_24.291666
|
61
|
+
GGCATCTCCGGTGCGGGCAAATACGTGGAAATGCGCGCCGAAATGGATGTGGTGGTGCTG
|
62
|
+
ATCTCCAACTGCCCGCAACTGAATAACCCCTGCAATGCCTATAACCCGACGCCAGTTCGC
|
63
|
+
CTGCTGGTATGGGATGCCGTCTAGGC
|
64
|
+
>NODE_20_length_189_cov_24.730158
|
65
|
+
GGCGGGGCCAACCTGGCCGCGCTGTTTTACAACCCGGAAGACAAGCTGGAACGCTACAAC
|
66
|
+
ATGCCGGATTCGCTGAAGGCGCAGCATACGGCGTACCTCACCACCGGCAATGTCTGCTAT
|
67
|
+
TCCGACATGGGCCGCGTCATGTGTTCCATCATTGGCGATAGCGTGGGCTGGCACGATACC
|
68
|
+
TTCTGCGGCGTGACCGATGCCGCCATGATCGAAGCCCAGTATGGCAAGGCCACGTTTCA
|
69
|
+
>NODE_22_length_51_cov_24.686274
|
70
|
+
CTTTCCGTGTTGATAAAGCCGCGGGCGTTTTGCTCACACTGCGTGCGGCATACATCATCG
|
71
|
+
GGCGCGGCGGCCCCGGCATACCAGGCCGTGAGTTTTACTGC
|
72
|
+
>NODE_23_length_118_cov_48.813560
|
73
|
+
AAGCTGGCATGCAACCTGCTAGAGAATGACGGATACAACGGTCAGTTAGTGTCAGCCAAC
|
74
|
+
TGAATCAACCGCTCACCGGGACGGCCCGGTGAGATCTATACCCAGCGGGACGGCCCGCAC
|
75
|
+
AAGGTTAGTCATGTTTCATAAAGTGCTTATTGCGAACCGCGGCGAGAT
|
76
|
+
>NODE_25_length_101_cov_22.603960
|
77
|
+
CTGGAGGTCAACACCCGGCTGCAAGTGGAGCACGGCGTGACCGAGCTGGTAAGCGGCGTG
|
78
|
+
GACCTGGTGGGCTGGATGATCCGTCTCGCCGCAGGCGAGCACGACTTTATTGCGGCCTAT
|
79
|
+
CAGCATCAGCCTAAGGGCCATGCCATTCAGG
|
80
|
+
>NODE_27_length_51_cov_30.862745
|
81
|
+
TTTATTGCGGCCTATCAGCATCAGCCTAAGGGCCATGCCATTCAGGTGCGTGTGTATGCC
|
82
|
+
GAAGATGCCAACAAGCAGTTTCAGCCCAGCTCGGGCGTGCT
|
83
|
+
>NODE_28_length_204_cov_24.857843
|
84
|
+
GCCGAAGTGAAGAAAGGCCAGATATTCCGCATTCTGGACCTGGAAGGCAATCAGGCGGTG
|
85
|
+
GATACGCTTTTTTACAGCGCCGCTGATCCGGAAGAGCGCTACAGCGCGGTGGATACCATT
|
86
|
+
GCCCGCCAGCGGCAGCTTTACCTGACTACCGGCTCGGTGCTGTATTCGAGCGAAGGCCGG
|
87
|
+
CCCATGTTGACCATCACCGCGGATACCTGTGGCCGCCACGATACCCTGGGCGGGGCCTGT
|
88
|
+
GCCGCTGAGAGCAA
|
89
|
+
>NODE_29_length_96_cov_20.645834
|
90
|
+
TCCACGTATTTGCCCGCACCGGAGATGCCATCATCAAACTTGAGATGGCCATCGGCGGTG
|
91
|
+
ACCGGCACATTCATGAAGAAATTGATGTTGGCGGTAATGTCGCGCTTGCTCATGTGCCGG
|
92
|
+
TGCGTGGCACAGCCGCAATGGTTGAG
|
93
|
+
>NODE_30_length_126_cov_31.087301
|
94
|
+
TACGTGGAAGCCGCGCGCCACATTGAAGTGCAGATTTTTGGCGATGGCGCAGGTCATGTG
|
95
|
+
GTGGCGCTGGGCGAGCGCGATTGCTCGGTGCAGCGCCGCAACCAGAAGGTGATAGAAGAA
|
96
|
+
ACCCCGGCGCCCAATATCAGCGAGGCGATACGCCAGCAGCTGGCCGAGACAGCGGT
|
97
|
+
>NODE_32_length_51_cov_23.725491
|
98
|
+
GCGATACGCCAGCAGCTGGCCGAGACAGCGGTGCGTCTGGCCAGTGCCATCGGCTATCGC
|
99
|
+
TCGGCGGGCACGGTGGAATTTGTTTACGACAATGCCAGCGG
|
100
|
+
>NODE_33_length_174_cov_24.517241
|
101
|
+
TAATCCTGTATGGTGCTCATGACGCCGCCATCCAGCACATCCAGCGTGTGTGGGCGGTAA
|
102
|
+
ACAAAGCTGTTGAGGTAACGCGTGGTCTGCTGCCCGGCCGGGAATATGCTGTCGGCCAGC
|
103
|
+
ACCTGGCGCAGGTACTCCAAGTTGGTTTCAATGCCGGCGAGGCGGGTCTGGTCTAGCGCG
|
104
|
+
GTTTGCATGGATTGCACCGCAGCAGCGCGGTCACTGGCATGCAC
|
105
|
+
>NODE_34_length_54_cov_45.907406
|
106
|
+
AGCGCGGTTTGCATGGATTGCACCGCAGCAGCGCGGTCACTGGCATGCACCAGCACCTTG
|
107
|
+
GCCAGCAAGGGGTCGTAATACGGCGAAACCTCGCTGCCCTGCTC
|
108
|
+
>NODE_35_length_60_cov_52.799999
|
109
|
+
TCACGCATCTGTTGGGGAGTGGGGCCGATAAAGGCAATGCCTGCGGCTTCGCAGGCTTCG
|
110
|
+
GCAAAGCCGGGGTTTTCAGACAGAAAGCCATAGCCCGGATGGATGGCTTG
|
111
|
+
>NODE_36_length_51_cov_26.823530
|
112
|
+
CCGACGCCAGTTCGCCTGCTGGTATGGGATGCCGTCTAGGCCACCACGCAGAAGCTGGCA
|
113
|
+
TGCAACCTGCTAGAGAATGACGGATACAACGGTCAGTTAGT
|
114
|
+
>NODE_37_length_99_cov_26.727272
|
115
|
+
TTCATGCCAAAGCCCATTTCAGCGGCCTGTGCCAGCACGTTTTTCAGTGCGACGCGGGTG
|
116
|
+
TTCAGCGCATAGGGCTCGCCCTGAAAGCCATTGTCTGCGGGCATCCAGGCCACTTTTGGT
|
117
|
+
TCCCATGGCAAGGGAATGATATGGTCCAG
|
118
|
+
>NODE_38_length_148_cov_23.344595
|
119
|
+
GCATACCAGGCCGTGAGTTTTACTGCAGCCGGTTTGTATTCGGTGGCAGGATCTAGCGGA
|
120
|
+
TGCGGCGCGGCAGATAACACCAGCAACACGTTCATGTCGAAGCGCACATCCACATAATCG
|
121
|
+
CCCGCCTTGCTATGGCCGGTGACAAAGCTCAGCGCACCGTTGTCATCCGGCACCGCCTTG
|
122
|
+
CTGAAAAAATTGACGTTG
|
123
|
+
>NODE_40_length_87_cov_21.885057
|
124
|
+
AGCGCACCGTTGTCATCCGGCACCGCCTTGCTGAAAAAATTGACGTTGGCAACCAGATCG
|
125
|
+
CGCTTGCCCAGACCGTATTTCGCCAGTTCCACCAGCAGGCCATCCTTGCCGCTGCGGTGC
|
126
|
+
ATGGCATTGCGGTGGGT
|
127
|
+
>NODE_41_length_135_cov_46.355556
|
128
|
+
AAAAGAGACAAGGACAAAAGCATGAGTGCTGTATTTGAACCTGCTGCCGTGCTGTGGGAA
|
129
|
+
GAAACCATCCCCGGCGGCAATCACTGGTCAGGCCTGATACGCCGAGGCACTGCGCTGCGT
|
130
|
+
ATCACCGACCTGGAGGGCGGGGCCAACCTGGCCGCGCTGTTTTACAACCCGGAAGACAAG
|
131
|
+
CTGGA
|
132
|
+
>NODE_42_length_75_cov_26.973333
|
133
|
+
ATGGATAACTTCGGCTGGCTGGACAAGATGGCGACCGCCATCAACGACCTGGGCTGGGAT
|
134
|
+
CTGTATTCGTTTGACCACGAGGACGGCAACAGCCAGTTCGAGTTTGACTTCAACTACAGC
|
135
|
+
GATGC
|
136
|
+
>NODE_43_length_75_cov_44.013332
|
137
|
+
CACGAGGACGGCAACAGCCAGTTCGAGTTTGACTTCAACTACAGCGATGCGCTGACCATG
|
138
|
+
TGCGACCGCTTCACCTTCTTCCGTTACATGGCCAAGCACTACGCCAAGGAAGAGGGCCTG
|
139
|
+
CTGGC
|
140
|
+
>NODE_44_length_57_cov_53.122807
|
141
|
+
CGGGATTCACAACGGCCACCGCCCATGGGCACGCGTACCGAGTTGGTACGGTTGTTGGAG
|
142
|
+
CCGTAGGAGTTGAATACCGGCGCCCAGCTGAAGTAGCTCATGGCACC
|
143
|
+
>NODE_46_length_267_cov_25.217228
|
144
|
+
AGATGCTGGCGCAGCATGTCGTTGATGGCTTGCGAGCGGCTTTCGAATCCCCGCTCAATC
|
145
|
+
ACCATGGAATCGAGCTCGGCATGCAGTTCATCCGGCAAGGAGATACTGATGCGATTTACC
|
146
|
+
GGTGCCTTTTTGTTTTTCTCGTTCATGTTTCCTCCTGTGTGACTTGCCGGTTTGGCGCGA
|
147
|
+
CCAAAGGCGCCATCATGGCAGACCGAAGCAGGCCTTGCAGCCTGCCCCGTCAACACCTCG
|
148
|
+
GCTTAGAACATGTAGCTGTAACGATCAATTTCCCACTGGCTCACGGTCAGGTGGTAGGTT
|
149
|
+
TCCCATTCCTGGCTCTT
|
150
|
+
>NODE_47_length_51_cov_25.784313
|
151
|
+
ACCTTGGCCAGCAAGGGGTCGTAATACGGCGAAACCTCGCTGCCCTGCTCTACCCAGGCA
|
152
|
+
TCCACCCGCACATCGGAGGGGAACACCACTTCGGTCAGCAC
|
153
|
+
>NODE_53_length_51_cov_26.156862
|
154
|
+
TGCCGGTGCGTGGCACAGCCGCAATGGTTGAGCGCATGCATGAAACTGTCGCGGCAGCTG
|
155
|
+
TGCATGGGGCGCTTTTCCAGGGCATAGCGCACGGTGTTGCT
|
156
|
+
>NODE_55_length_65_cov_23.953846
|
157
|
+
ACGGCAGCAGGTTCAAATACAGCACTCATGCTTTTGTCCTTGTCTCTTTTTCCCGTTATT
|
158
|
+
GCCCCGCCTTGCGGGCCTTGGGCGTCATCGGGTGTAACGGCGGGATAACCGCCCC
|
159
|
+
>NODE_57_length_124_cov_22.322580
|
160
|
+
CTTGGGCGTCATCGGGTGTAACGGCGGGATAACCGCCCCCATCAGTTGCAACTTGCCGGT
|
161
|
+
AATCACACCACGCAACGCGATGATCTCATTCGCCACGGCCTGCACGGTGAGTGCCGGGCC
|
162
|
+
TTGGACCAGTATCACTTCCATGGTCTGGTTATCGGCCAGATGCACGTGCAGCGA
|
163
|
+
>NODE_59_length_78_cov_30.179487
|
164
|
+
TGCACGTGCAGCGAGCTGATCACTTCATCCAGATGCTGGTACTGCAAATCTGCAATGGTT
|
165
|
+
TTTTGCAGGCCGCGCGTGCCATTGTTGTAAAGAATGGTGATGGTACCCACCATGACCTCA
|
166
|
+
TTGCCTTT
|
167
|
+
>NODE_61_length_69_cov_45.028984
|
168
|
+
GGATTCGAAAGCCGCTCGCAAGCCATCAACGACATGCTGCGCCAGCATCTGGCCGAGCAT
|
169
|
+
AAGCGTGAAAAAGGCAATGAGGTCATGGTGGGTACCATCACCATTCTTTACAACAATGG
|
170
|
+
>NODE_64_length_51_cov_13.745098
|
171
|
+
CTTCGGCCATCCAGGGGTCGCCGGCATCGCATACCTGGTCCAGCACGGCGTTGCGCGGAT
|
172
|
+
CCAATGGGCTTTCGGTCAGCATCTGGCTCATAGGTAATACC
|
173
|
+
>NODE_65_length_84_cov_14.511905
|
174
|
+
GCTGGCTCCGAGCGCTACACCGGCTACGCGCTGGATGGCCTGGGCCAGGCACCAAGCGAT
|
175
|
+
GATGAACTGACCTCGGTTCCTGATCTGGACCATATCATTCCCTTGCCATGGGAACCAAAA
|
176
|
+
GTGGCCTGGATGCC
|
177
|
+
>NODE_66_length_63_cov_46.888889
|
178
|
+
GGCTATCGCTCGGCGGGCACGGTGGAATTTGTTTACGACAATGCCAGCGGCGACTTTTAC
|
179
|
+
TTTCTGGAGGTCAACACCCGGCTGCAAGTGGAGCACGGCGTGACCGAGCTGGT
|
180
|
+
>NODE_67_length_53_cov_17.339622
|
181
|
+
CCATGGGGCCGGAAGGCGGCACGCCGATGTTCCAGTAGCCGGTGCGGCCGGGGTAATCCT
|
182
|
+
GTATGGTGCTCATGACGCCGCCATCCAGCACATCCAGCGTGTG
|
183
|
+
>NODE_70_length_288_cov_27.302084
|
184
|
+
GAGCCGTAGGAGTTGAATACCGGCGCCCAGCTGAAGTAGCTCATGGCACCACGGCGCACC
|
185
|
+
AGGCGCTTGTAGCTGTTGACCGTAGGCGCAAACGCGGCACACAGGGCCGGGCCGTGCTTG
|
186
|
+
AGAATACCGGCGATGAACTGGTAGCCCAGCGTGGTCAAGCCCAGGCCGCGTGGATCATCC
|
187
|
+
TTGGGATCGCAGGCAAACAGGTTCTTGCCGGTCTTGAGGTCGTACAGCGACATGTTGAAG
|
188
|
+
TGCGCGCCAGTGCCGGTCTTGTCGGCAAACGGCTTGGGCATCATGGTCGCCAGCAGGCCC
|
189
|
+
TCTTCCTTGGCGTAGTGCTTGGCCATGTAACGGAAGAA
|
190
|
+
>NODE_71_length_129_cov_27.193798
|
191
|
+
GCTGAAATGGGCTTTGGCATGAACCTCGGCATTGAGTGCGAGATTTACCTCCTGAAGCAG
|
192
|
+
GAATCCGATGGCAAGCTGTCTATCCCTAACCCCGATGACAAGCTGGTCAAGCCTTGCTAC
|
193
|
+
GACGTACGCGGCTTTATGGATAACTTCGGCTGGCTGGACAAGATGGCGACCGCCATCAA
|
194
|
+
>NODE_72_length_75_cov_32.453335
|
195
|
+
ATGGATAACTTCGGCTGGCTGGACAAGATGGCGACCGCCATCAACGACCTCGGCTGGGAT
|
196
|
+
CTGTATTCGTTTGATCACGAGGACGGCAACAGCCAGTTCGAGTTTGACTTCAACTACAGC
|
197
|
+
GATGC
|
198
|
+
>NODE_73_length_96_cov_22.000000
|
199
|
+
GCCTAGACGGCATCCCATACCAGCAGGCGAACTGGCGTCGGGTTATAGGCGTTGCAGGGG
|
200
|
+
TTATTCAGTTGCGGGCAGTTGGAGATCAGCACCACGACATCCATTTCGGCGCGCATTTCC
|
201
|
+
ACGTATTTGCCCGCACCGGAGATGCC
|
202
|
+
>NODE_74_length_99_cov_23.818182
|
203
|
+
CTGGACCATATCATTCCCTTGCCATGGGAACCAAAAGTGGCCTGGATGCCTGCTGACAAT
|
204
|
+
GGCTTTCAGGGCGAACCCTATGCCCTGAACACCCGCGTGGCACTGAAAAACGTGCTGGCA
|
205
|
+
CAGGCCGCTGAAATGGGCTTTGGCATGAA
|
206
|
+
>NODE_75_length_148_cov_26.506756
|
207
|
+
CAACGTCAATTTTTTCAGCAAGGCGGTGCCGGATGACAACGGTGCGCTGAACTTTGTCGC
|
208
|
+
CGGGCATAGCAAGGCGGGCGATTATGTGGATGTGCGCTTCGACATGAACGTGCTGCTGGT
|
209
|
+
GCTATCTGCCGCGCCGCATCCGCTAGACCCTGCCACCGAATACAAACCGGCTGCAGTAAA
|
210
|
+
ACTCACGGCCTGGTATGC
|
211
|
+
>NODE_76_length_124_cov_26.887096
|
212
|
+
TCGCTGCACGTGCATCTGGCCGATAACCAGACCATGGAAGTGATACTGGTACAAGGCCCG
|
213
|
+
GCACTCACCGTGCAGGCCGTGGCGAATGAGATCATCGCGCTGCGTGGCGTGATTACCGGC
|
214
|
+
AAGCTGCAACTGATGGGGGCGGTTATCCCGCCGTTACACCCGATGACGCCCAAG
|
215
|
+
>NODE_77_length_65_cov_24.261538
|
216
|
+
GGGGCGGTTATCCCGCCGTTACACCCGATGACGCCCAAGGCCCGCAAGGCTGGGCAATAA
|
217
|
+
CGCGGAAAAGAGACAAGGACAAAAGCATGAGTGCTGTATTTGAACCTGCTGCCGT
|
218
|
+
>NODE_78_length_91_cov_25.835165
|
219
|
+
CGTGGCATTCAATTCCTGCCGCAAACCCTGCAGGAAGCGGTTGAGGCATTTGCTGCCGAT
|
220
|
+
CCGCTGGTGGAAAAAACCCTGGGCAAGGAGCTGCGTGACGAGTTTGTCACCTACAAGAGC
|
221
|
+
CAGGAATGGGAAACCTACCAC
|
222
|
+
>NODE_79_length_78_cov_19.423077
|
223
|
+
TGCACGTGCAGCGAGCTGATCACTTCATCCAGATGCTGGTACTGCAAATCCGCAATGGTT
|
224
|
+
TTTTGCAGGCCTCGCGTACCATTGTTGTAAAGAATGGTGATGGTACCCACCATGACCTCA
|
225
|
+
TTGCCTTT
|
226
|
+
>NODE_80_length_51_cov_18.254902
|
227
|
+
GGCAGGAATTGAATGCCACGGCCCATGCGCTCTTCTTCGCTGATGGCGTACAGGTTGTCT
|
228
|
+
TCGTTCGGTGCACCTGGGTCCAGCTGCTCGCGTATGCCTTC
|
229
|
+
>NODE_81_length_105_cov_20.038095
|
230
|
+
TCTTCGTTCGGTGCACCTGGGTCCAGCTGCTCGCGTATGCCTTCCAGACCAGCGGCCAAT
|
231
|
+
GCCAGCGTGGCAGCCAGATAAGGATTCACGGCACCATCCGCATTGCGGGATTCACAACGG
|
232
|
+
CCACCGCCCATGGGCACGCGTACCGAGTTGGTACG
|
233
|
+
>NODE_82_length_237_cov_22.341772
|
234
|
+
ACAAGGTTAGTCATGTTTCATAAAGTGCTTATTGCGAACCGCGGCGAGATTGCTTGCCGC
|
235
|
+
ATCATTCGTACCCTCAAGCAGCTTGGTGTTCGCTCAGTAGCCGTCTATTCCGAAGCCGAT
|
236
|
+
GCCGGTGCACGCCATGTGCTGGAGGCAGATGAGGCAGTCTGTGTCGGCCCGGCACCCGCC
|
237
|
+
GCCGAGAGTTACCTGAATATTCCTGCCATCCTGCAAGCGGCGCACCAGACTGGTGCACAA
|
238
|
+
GCCATCCATCCGGGCTATGGCTTTCTGTCTGAAAACCCCGGCTTTGC
|
239
|
+
>NODE_83_length_126_cov_24.801588
|
240
|
+
ACCGCTGTCTCGGCCAGCTGCTGGCGTATCGCCTCGCTGATATTGGGCGCAGGGGTTTCT
|
241
|
+
TCTATCACCTTCTGGTTGCGGCGCTGCACCGAACAATCGCGCTCACCCAGCGCCACCACA
|
242
|
+
TGCCCGGCGCCATCGCCAAAAATCTGCACTTCAATGTGGCGCGCGGCTTCCACGTA
|
243
|
+
>NODE_84_length_174_cov_24.965517
|
244
|
+
GTGCATGCCAGTGACCGCGCTGCTGCGGTGCAATCCATGCAAACCGCGCTCGACCAGACC
|
245
|
+
CGCCTCGCCGGCATTGAAACCAACCTGGAGTACCTGCGTCAGGTGCTGGCCGACAGCGTA
|
246
|
+
TTCCCGGCAGGGCAGCAGACCACGCGCTACCTCAACAGCTTTGTTTACCGTCCGCACACG
|
247
|
+
CTGGATGTGCTGGATGGCGGCGTCATGAGCACCATACAGGATTA
|
248
|
+
>NODE_85_length_51_cov_24.941177
|
249
|
+
GAAGCCGCAGGCATTGCCTTTATCGGCCCCACTCCCCAACAGATGCGTGATTTTGGTCTC
|
250
|
+
AAGCACACCGCCCGCGCGCTGGCCGAGGCCAATGGCGTGCC
|
251
|
+
>NODE_87_length_51_cov_14.313725
|
252
|
+
AGCAACACCGTGCGCTATGCCCTGGAAAAGCGCCCCATGCACAGCTGCCGTGACAGTTTC
|
253
|
+
ATGCATGCGCTCAACCATTGCGGCTGTGCCACGCACCGGCA
|
254
|
+
>NODE_88_length_267_cov_24.277153
|
255
|
+
AGATGCTGGCGCAGCATGTCGTTGATGGCTTGCGAGCGGCTTTCGAATCCGCGCTCAATC
|
256
|
+
ACCATGGAATCAAGCTCGGCATGCAGCTCATCCGGCAAGGAGATACTGATGCGATTTACC
|
257
|
+
GGTGCCTTTTTGCTTTTCTCGTTCATGTTTCCTCCTGTGTGACTTGCCGGTTTGGCGCGA
|
258
|
+
CTAAAGGCGCCATCATGGCAGACCGGGGAAGGCCTTGCAGCCTGCCCCGTCAACACCTTG
|
259
|
+
GCTTAGAACATGTAGCTGTAACGATCGATTTCCCACTGGCTCACGGTCAGGTGGTAGGTT
|
260
|
+
TCCCATTCCTGGCTCTT
|
261
|
+
>NODE_89_length_96_cov_20.604166
|
262
|
+
CTCAACCATTGCGGCTGTGCCACGCACCGGCACATGAGCAAGCGCGACATCACCGCCAAC
|
263
|
+
ATCAATTTCTTCATGAATGTGCCGGTCACCGCCGACGGCCATCTCAAGTTTGATGATGGC
|
264
|
+
ATCTCCGGTGCGGGCAAATACGTGGA
|
265
|
+
>NODE_90_length_101_cov_23.009901
|
266
|
+
CTGGAGGTCAACACCCGGCTGCAAGTGGAGCACGGCGTGACCGAGCTGGTGAGCGGCGTG
|
267
|
+
GACCTGGTGGGCTGGATGATCCGCCTGGCCGCAGGCGAGCGCGACTTTATTGCGGCCTAT
|
268
|
+
CAGCATCAGCCTAAGGGCCATGCCATTCAGG
|
269
|
+
>NODE_91_length_51_cov_15.941176
|
270
|
+
GCAGTAAAACTCACGGCCTGGTATGCCGGGGCCGCCGCGCCCGATGATGTGTGCCGCACG
|
271
|
+
CAGTGTGAGCAAAACGCCCGCGGCTTTATCAACACGGAAAG
|
272
|
+
>NODE_92_length_102_cov_23.372549
|
273
|
+
CTGCCGGGCACCGGCCTGCTGGCAGATGTCGCCGAAGCCCGCACGCATGCGGCACGCATC
|
274
|
+
GGCTACCCGGTGATGCTGAAGAGCACGGCAGGTGGTGGCGGTATCGGCATGCGCCTGATC
|
275
|
+
TGGGGCGAAGAGGAACTGGCCGAAGCCTTTGC
|
276
|
+
>NODE_93_length_51_cov_24.568628
|
277
|
+
CCGCTGGCATTGTCGTAAACAAATTCCACCGTGCCCGCCGAGCGATAGCCTATGGCACTG
|
278
|
+
GCCAGACGCACCGCTGTCTCGGCCAGCTGCTGGCGTATCGC
|
279
|
+
>NODE_94_length_51_cov_25.686274
|
280
|
+
TTTATTGCGGCCTATCAGCATCAGCCTAAGGGCCATGCCATTCAGGTGCGGGTGTATGCC
|
281
|
+
GAAGATGCCAACAAGCAGTTTCAGCCCAGCTCGGGCGTGCT
|
282
|
+
>NODE_95_length_51_cov_22.529411
|
283
|
+
ACTAACTGACCGTTGTATCCGTCATTCTCTAGCAGGTTGCATGCCAGCTTGTGCGTGGTG
|
284
|
+
GCCTAGACGGCATCCCATACCAGCAGGCGAACTGGCGTCGG
|
285
|
+
>NODE_96_length_51_cov_23.549019
|
286
|
+
CTTCGGCCATCCAGGGGTCGCCGGCATCGCATACCTGGTCCAGCACGGCGCTGCGCGGAT
|
287
|
+
CCAATGGGCTTTCGGTCAGCATCTGGCTCATAGGTAATACC
|
288
|
+
>NODE_97_length_54_cov_26.703703
|
289
|
+
GCGGCTTCCACGTATTTTTCCAGATAAAGGCCGGATTCCTTGAAATTGGCACGCGACAGG
|
290
|
+
CGCTGCACCGAGGCAAAGGCTTCGGCCAGTTCCTCTTCGCCCCA
|
291
|
+
>NODE_98_length_51_cov_24.529411
|
292
|
+
ACCTTGGCCAGCAAGGGGTCGTAATACGGCGAAACCTCGCTGCCCTGCTCCACCCAGGCA
|
293
|
+
TCCACCCGCACATCGGAGGGGAACACCACTTCGGTCAGCAC
|
294
|
+
>NODE_99_length_51_cov_22.588236
|
295
|
+
TTGGTCTCAAGCACACCGCCCGCGCGCTGGCCGAGGCCAATGGCGTGCCATTGCTGCCGG
|
296
|
+
GCACCGGCCTGCTGGCAGATGTCGCCGAAGCCCGCACGCAT
|
@@ -0,0 +1,100 @@
|
|
1
|
+
ID lgth out in long_cov short1_cov short1_Ocov short2_cov short2_Ocov long_nb short1_nb short2_nb
|
2
|
+
1 131 1 0 0.000000 18.167939 18.167939 0.000000 0.000000 0 70 0
|
3
|
+
2 51 2 2 0.000000 71.372549 71.372549 0.000000 0.000000 0 74 0
|
4
|
+
3 87 1 1 0.000000 43.356322 43.356322 0.000000 0.000000 0 64 0
|
5
|
+
4 204 1 1 0.000000 44.617647 44.617647 0.000000 0.000000 0 91 0
|
6
|
+
5 54 1 1 0.000000 25.037037 25.037037 0.000000 0.000000 0 35 0
|
7
|
+
6 18 2 2 0.000000 54.722222 54.722222 0.000000 0.000000 0 40 0
|
8
|
+
7 102 1 1 0.000000 27.735294 27.735294 0.000000 0.000000 0 45 0
|
9
|
+
8 237 1 1 0.000000 29.637131 29.637131 0.000000 0.000000 0 87 0
|
10
|
+
9 51 1 1 0.000000 28.039216 28.039216 0.000000 0.000000 0 24 0
|
11
|
+
10 1 2 2 0.000000 54.000000 54.000000 0.000000 0.000000 0 29 0
|
12
|
+
11 51 1 1 0.000000 20.803922 20.803922 0.000000 0.000000 0 23 0
|
13
|
+
12 288 1 1 0.000000 25.437500 25.437500 0.000000 0.000000 0 78 0
|
14
|
+
13 91 1 1 0.000000 21.835165 21.835165 0.000000 0.000000 0 24 0
|
15
|
+
14 30 2 2 0.000000 45.000000 45.000000 0.000000 0.000000 0 33 0
|
16
|
+
15 51 1 1 0.000000 25.176471 25.176471 0.000000 0.000000 0 24 0
|
17
|
+
16 129 1 1 0.000000 28.604651 28.604651 0.000000 0.000000 0 39 0
|
18
|
+
17 6 2 2 0.000000 43.166667 43.166667 0.000000 0.000000 0 25 0
|
19
|
+
18 105 1 1 0.000000 26.990476 26.990476 0.000000 0.000000 0 43 0
|
20
|
+
19 96 1 1 0.000000 24.291667 24.291667 0.000000 0.000000 0 34 0
|
21
|
+
20 189 1 1 0.000000 24.730159 24.730159 0.000000 0.000000 0 54 0
|
22
|
+
21 49 2 2 0.000000 45.714286 45.714286 0.000000 0.000000 0 42 0
|
23
|
+
22 51 1 1 0.000000 24.686275 24.686275 0.000000 0.000000 0 27 0
|
24
|
+
23 118 2 2 0.000000 48.813559 48.813559 0.000000 0.000000 0 87 0
|
25
|
+
24 2 2 2 0.000000 47.000000 47.000000 0.000000 0.000000 0 27 0
|
26
|
+
25 101 1 1 0.000000 22.603960 22.603960 0.000000 0.000000 0 33 0
|
27
|
+
26 4 2 2 0.000000 60.250000 60.250000 0.000000 0.000000 0 35 0
|
28
|
+
27 51 1 1 0.000000 30.862745 30.862745 0.000000 0.000000 0 28 0
|
29
|
+
28 204 1 1 0.000000 24.857843 24.857843 0.000000 0.000000 0 64 0
|
30
|
+
29 96 1 1 0.000000 20.645833 20.645833 0.000000 0.000000 0 36 0
|
31
|
+
30 126 1 1 0.000000 31.087302 31.087302 0.000000 0.000000 0 51 0
|
32
|
+
31 18 2 2 0.000000 45.277778 45.277778 0.000000 0.000000 0 29 0
|
33
|
+
32 51 1 1 0.000000 23.725490 23.725490 0.000000 0.000000 0 21 0
|
34
|
+
33 174 1 1 0.000000 24.517241 24.517241 0.000000 0.000000 0 53 0
|
35
|
+
34 54 2 2 0.000000 45.907407 45.907407 0.000000 0.000000 0 54 0
|
36
|
+
35 60 2 2 0.000000 52.800000 52.800000 0.000000 0.000000 0 45 0
|
37
|
+
36 51 1 1 0.000000 26.823529 26.823529 0.000000 0.000000 0 29 0
|
38
|
+
37 99 1 1 0.000000 26.727273 26.727273 0.000000 0.000000 0 34 0
|
39
|
+
38 148 1 1 0.000000 23.344595 23.344595 0.000000 0.000000 0 45 0
|
40
|
+
39 2 2 2 0.000000 43.500000 43.500000 0.000000 0.000000 0 26 0
|
41
|
+
40 87 1 1 0.000000 21.885057 21.885057 0.000000 0.000000 0 25 0
|
42
|
+
41 135 2 2 0.000000 46.355556 46.355556 0.000000 0.000000 0 90 0
|
43
|
+
42 75 1 1 0.000000 26.973333 26.973333 0.000000 0.000000 0 27 0
|
44
|
+
43 75 2 2 0.000000 44.013333 44.013333 0.000000 0.000000 0 51 0
|
45
|
+
44 57 2 2 0.000000 53.122807 53.122807 0.000000 0.000000 0 57 0
|
46
|
+
45 24 2 2 0.000000 44.750000 44.750000 0.000000 0.000000 0 19 0
|
47
|
+
46 267 1 1 0.000000 25.217228 25.217228 0.000000 0.000000 0 83 0
|
48
|
+
47 51 1 1 0.000000 25.784314 25.784314 0.000000 0.000000 0 29 0
|
49
|
+
48 45 2 2 0.000000 44.133333 44.133333 0.000000 0.000000 0 53 0
|
50
|
+
49 36 2 2 0.000000 51.083333 51.083333 0.000000 0.000000 0 44 0
|
51
|
+
50 45 2 2 0.000000 39.155556 39.155556 0.000000 0.000000 0 44 0
|
52
|
+
51 43 2 2 0.000000 43.209302 43.209302 0.000000 0.000000 0 46 0
|
53
|
+
52 18 2 2 0.000000 59.055556 59.055556 0.000000 0.000000 0 35 0
|
54
|
+
53 51 1 1 0.000000 26.156863 26.156863 0.000000 0.000000 0 24 0
|
55
|
+
54 23 2 2 0.000000 43.565217 43.565217 0.000000 0.000000 0 37 0
|
56
|
+
55 65 1 1 0.000000 23.953846 23.953846 0.000000 0.000000 0 31 0
|
57
|
+
56 11 2 2 0.000000 46.363636 46.363636 0.000000 0.000000 0 30 0
|
58
|
+
57 124 1 1 0.000000 22.322581 22.322581 0.000000 0.000000 0 38 0
|
59
|
+
58 36 2 2 0.000000 55.861111 55.861111 0.000000 0.000000 0 39 0
|
60
|
+
59 78 1 1 0.000000 30.179487 30.179487 0.000000 0.000000 0 39 0
|
61
|
+
60 21 2 2 0.000000 46.761905 46.761905 0.000000 0.000000 0 24 0
|
62
|
+
61 69 2 2 0.000000 45.028986 45.028986 0.000000 0.000000 0 49 0
|
63
|
+
62 6 2 2 0.000000 65.166667 65.166667 0.000000 0.000000 0 34 0
|
64
|
+
63 27 2 2 0.000000 59.259259 59.259259 0.000000 0.000000 0 51 0
|
65
|
+
64 51 1 1 0.000000 13.745098 13.745098 0.000000 0.000000 0 12 0
|
66
|
+
65 84 2 0 0.000000 14.511905 14.511905 0.000000 0.000000 0 40 0
|
67
|
+
66 63 2 2 0.000000 46.888889 46.888889 0.000000 0.000000 0 56 0
|
68
|
+
67 53 2 0 0.000000 17.339623 17.339623 0.000000 0.000000 0 23 0
|
69
|
+
68 9 2 2 0.000000 52.444444 52.444444 0.000000 0.000000 0 29 0
|
70
|
+
69 23 0 0 0.000000 4.652174 4.652174 0.000000 0.000000 0 11 0
|
71
|
+
70 288 1 1 0.000000 27.302083 27.302083 0.000000 0.000000 0 103 0
|
72
|
+
71 129 1 1 0.000000 27.193798 27.193798 0.000000 0.000000 0 63 0
|
73
|
+
72 75 1 1 0.000000 32.453333 32.453333 0.000000 0.000000 0 46 0
|
74
|
+
73 96 1 1 0.000000 22.000000 22.000000 0.000000 0.000000 0 29 0
|
75
|
+
74 99 1 1 0.000000 23.818182 23.818182 0.000000 0.000000 0 48 0
|
76
|
+
75 148 1 1 0.000000 26.506757 26.506757 0.000000 0.000000 0 46 0
|
77
|
+
76 124 1 1 0.000000 26.887097 26.887097 0.000000 0.000000 0 50 0
|
78
|
+
77 65 1 1 0.000000 24.261538 24.261538 0.000000 0.000000 0 23 0
|
79
|
+
78 91 1 1 0.000000 25.835165 25.835165 0.000000 0.000000 0 34 0
|
80
|
+
79 78 1 1 0.000000 19.423077 19.423077 0.000000 0.000000 0 27 0
|
81
|
+
80 51 1 1 0.000000 18.254902 18.254902 0.000000 0.000000 0 22 0
|
82
|
+
81 105 1 1 0.000000 20.038095 20.038095 0.000000 0.000000 0 32 0
|
83
|
+
82 237 1 1 0.000000 22.341772 22.341772 0.000000 0.000000 0 69 0
|
84
|
+
83 126 1 1 0.000000 24.801587 24.801587 0.000000 0.000000 0 41 0
|
85
|
+
84 174 1 1 0.000000 24.965517 24.965517 0.000000 0.000000 0 47 0
|
86
|
+
85 51 1 1 0.000000 24.941176 24.941176 0.000000 0.000000 0 25 0
|
87
|
+
86 50 0 1 0.000000 13.020000 13.020000 0.000000 0.000000 0 17 0
|
88
|
+
87 51 1 1 0.000000 14.313725 14.313725 0.000000 0.000000 0 21 0
|
89
|
+
88 267 1 1 0.000000 24.277154 24.277154 0.000000 0.000000 0 80 0
|
90
|
+
89 96 1 1 0.000000 20.604167 20.604167 0.000000 0.000000 0 24 0
|
91
|
+
90 101 1 1 0.000000 23.009901 23.009901 0.000000 0.000000 0 42 0
|
92
|
+
91 51 1 1 0.000000 15.941176 15.941176 0.000000 0.000000 0 17 0
|
93
|
+
92 102 1 1 0.000000 23.372549 23.372549 0.000000 0.000000 0 27 0
|
94
|
+
93 51 1 1 0.000000 24.568627 24.568627 0.000000 0.000000 0 23 0
|
95
|
+
94 51 1 1 0.000000 25.686275 25.686275 0.000000 0.000000 0 25 0
|
96
|
+
95 51 1 1 0.000000 22.529412 22.529412 0.000000 0.000000 0 23 0
|
97
|
+
96 51 1 1 0.000000 23.549020 23.549020 0.000000 0.000000 0 24 0
|
98
|
+
97 54 1 1 0.000000 26.703704 26.703704 0.000000 0.000000 0 24 0
|
99
|
+
98 51 1 1 0.000000 24.529412 24.529412 0.000000 0.000000 0 27 0
|
100
|
+
99 51 1 1 0.000000 22.588235 22.588235 0.000000 0.000000 0 20 0
|
@@ -0,0 +1,59 @@
|
|
1
|
+
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|
2
|
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|
9
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<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(620.065 145.026)">
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10
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+
<title>G</title>
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11
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+
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+
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17
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18
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