finishm 0.0.8 → 0.0.9

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Files changed (41) hide show
  1. checksums.yaml +4 -4
  2. data/Rakefile +2 -1
  3. data/VERSION +1 -1
  4. data/bin/finishm +18 -18
  5. data/ext/mkrf_conf.rb +1 -1
  6. data/finishm.gemspec +23 -19
  7. data/lib/finishm/connect.rb +65 -0
  8. data/lib/priner.rb +3 -3
  9. data/spec/data/gapfilling/5/a.svg +1118 -0
  10. data/spec/data/gapfilling/5/reads.faVanswer.bam +0 -0
  11. data/spec/data/gapfilling/5/reads.faVanswer.bam.bai +0 -0
  12. data/spec/data/gapfilling/5/reads2.fa +17961 -0
  13. data/spec/data/gapfilling/5/to_gapfill.fa +2 -0
  14. data/spec/data/gapfilling/5/velvet23_3.5/Graph2 +8758 -0
  15. data/spec/data/gapfilling/5/velvet23_3.5/LastGraph +8337 -0
  16. data/spec/data/gapfilling/5/velvet23_3.5/Log +210 -0
  17. data/spec/data/gapfilling/5/velvet23_3.5/PreGraph +303 -0
  18. data/spec/data/gapfilling/5/velvet23_3.5/Roadmaps +20440 -0
  19. data/spec/data/gapfilling/5/velvet23_3.5/Sequences +20921 -0
  20. data/spec/data/gapfilling/5/velvet23_3.5/contigs.fa +296 -0
  21. data/spec/data/gapfilling/5/velvet23_3.5/stats.txt +100 -0
  22. data/spec/data/visualise/2_paired_end/a.svg +59 -0
  23. data/spec/data/wander/1/reference.broken.fa +4 -0
  24. data/spec/data/wander/1/reference.fa +2 -0
  25. data/spec/data/wander/1/reference_reads.fa +2004 -0
  26. metadata +23 -20
  27. data/ext/src/third-party/zlib-1.2.3/adler32.o +0 -0
  28. data/ext/src/third-party/zlib-1.2.3/compress.o +0 -0
  29. data/ext/src/third-party/zlib-1.2.3/crc32.o +0 -0
  30. data/ext/src/third-party/zlib-1.2.3/deflate.o +0 -0
  31. data/ext/src/third-party/zlib-1.2.3/example +0 -0
  32. data/ext/src/third-party/zlib-1.2.3/gzio.o +0 -0
  33. data/ext/src/third-party/zlib-1.2.3/infback.o +0 -0
  34. data/ext/src/third-party/zlib-1.2.3/inffast.o +0 -0
  35. data/ext/src/third-party/zlib-1.2.3/inflate.o +0 -0
  36. data/ext/src/third-party/zlib-1.2.3/inftrees.o +0 -0
  37. data/ext/src/third-party/zlib-1.2.3/libz.a +0 -0
  38. data/ext/src/third-party/zlib-1.2.3/minigzip +0 -0
  39. data/ext/src/third-party/zlib-1.2.3/trees.o +0 -0
  40. data/ext/src/third-party/zlib-1.2.3/uncompr.o +0 -0
  41. data/ext/src/third-party/zlib-1.2.3/zutil.o +0 -0
@@ -0,0 +1,296 @@
1
+ >NODE_1_length_131_cov_18.167938
2
+ ACATGCCGGATTCGCTGAAGGCGCAGCATACGGCGTATCTCACCACCGGCAATGTCTGCT
3
+ ATTCCGACATGGGCCGCGTCATGTGCTCCATCATTGGCGATAGTGTGGGCTGGCACGATA
4
+ CCTTCTGCGGAGTGACCGATGCCGCCATGATCGAAGCCCAGTATGGCAAGGCCACGTTTC
5
+ A
6
+ >NODE_2_length_51_cov_71.372551
7
+ GTGACCGATGCCGCCATGATCGAAGCCCAGTATGGCAAGGCCACGTTTCAGACCCACCGC
8
+ AATGCCATGCACCGCAGCGGCAAGGATGGCCTGCTGGTGGA
9
+ >NODE_3_length_87_cov_43.356323
10
+ ACCCACCGCAATGCCATGCACCGCAGCGGCAAGGATGGCCTGCTGGTGGAGCTGGCGAAA
11
+ TACGGTCTGGGCAAGCGCGACCTGGTCGCCAACGTCAATTTTTTCAGCAAGGCGGTGCCG
12
+ GATGACAACGGTGCGCT
13
+ >NODE_4_length_204_cov_44.617645
14
+ TTGCTCTCAGCGGCACAGGCCCCGCCCAGGGTATCGTGGCGGCCACAGGTGTCCGCGGTG
15
+ ATGGTCAGCATGGGCCGGCCTTCATTTGAATACAGCACCGAGCCGGTGGTGAGGTAAAGC
16
+ TGGCGCTGGCGGGCAATGGTGTCTACCGCGCTGTAGCGCTCTTCGGGATCAGCGGCACTG
17
+ TAAAAAAGCGTATCCACCGCCTGGTTGCCTTCCAGGTCCAGAATGCGGAATATCTGGCCT
18
+ TTCTTCACTTCGGC
19
+ >NODE_5_length_54_cov_25.037037
20
+ GCGGCTTCCACGTATTTTTCCAGATAAAGGCCGGATTCCTTGAAATTGGCGCGTGACAGG
21
+ CGCTGCACCGAGGCAAAGGCTTCGGCCAGTTCCTCTTCGCCCCA
22
+ >NODE_7_length_102_cov_27.735294
23
+ GCAAAGGCTTCGGCCAGTTCCTCTTCGCCCCAGATCAGGCGCATGCCGATGCCGCCACCA
24
+ CCCGCCGTGCTCTTCAGCATCACCGGGTAGCCGATGCGTGCGGCATGCGTGCGGGCTTCG
25
+ GCGACATCTGCCAGCAGGCCGGTGCCCGGCAG
26
+ >NODE_8_length_237_cov_29.637131
27
+ ACAAGGTTAGTCATGTTTCATAAAGTGCTTATTGCGAACCGCGGCGAGATCGCTTGCCGC
28
+ ATCATTCGTACCCTCAAGCAGCTTGGTGTCCGCTCAGTAGCCGTCTATTCCGAAGCCGAT
29
+ GCCGGTGCACGGCATGTGCTGGAGGCGGATGAGGCTGTCTGCGTCGGTCCGGCGCCCGCC
30
+ GCCGAGAGTTACCTGAATATTCCCGCCATTCTGCAAGCGGCGCACCAGACTGGTGCGCAA
31
+ GCCATCCATCCGGGCTATGGCTTTCTGTCTGAAAACCCCGGCTTTGC
32
+ >NODE_9_length_51_cov_28.039215
33
+ ATGCGTGCGGGCTTCGGCGACATCTGCCAGCAGGCCGGTGCCCGGCAGCAGTGGCACGCC
34
+ ATTGGCCTCGGCCAGCGCGCGGGCGGTGTGCTTGAGACCAA
35
+ >NODE_11_length_51_cov_20.803921
36
+ GGCACGCCATTGGCCTCGGCCAGCGCGCGGGCGGTGTGCTTGAGACCAAAGTCACGCATC
37
+ TGTTGGGGAGTGGGGCCGATAAAGGCAATGCCTGCGGCTTC
38
+ >NODE_12_length_288_cov_25.437500
39
+ TTCTTCCGTTACATGGCCAAGCACTACGCCAAGGAAGAGGGCCTGCTGGCAACCATGATG
40
+ CCCAAGCCGTTTGCCGACAAGACCGGCACCGGCGCGCACTTCAACATGTCGCTGTACGAC
41
+ CTCAAGACTGGCAAGAACCTGTTTGCCTGCGACCCCAAGGATGATCCACGCGGCCTGGGC
42
+ CTGACCACATTGGGCTACCAGTTCATCGCCGGTATCCTCAAGCACGGCCCGGCCCTGTGC
43
+ GCGGCCTTTGCGCCTACGGTCAACAGCTACAAGCGCCTGGTGCGCCGCGGTGCCATGAGC
44
+ TACTTCAGCTGGGCGCCGGTATTCAACTCCTACGGCTC
45
+ >NODE_13_length_91_cov_21.835165
46
+ GTGGTAGGTTTCCCATTCCTGGCTCTTGTAGGTGACAAACTCGTCACGCAACTCCTTGCC
47
+ CAGGGTTTTTTCCACCAGCGGATCGGCAGCGAATGCCTCAACCGCTTCCTGCAGGGTTTG
48
+ CGGCAGGAATTGAATGCCACG
49
+ >NODE_15_length_51_cov_25.176470
50
+ GGCAGGAATTGAATGCCACGGCCCATGCGCTCTTCTTCGCTGATGGCGTAGAGGTTGTCT
51
+ TCGTTCGGTGCACCTGGGTCCAGCTGCTCGCGTATGCCTTC
52
+ >NODE_16_length_129_cov_28.604650
53
+ TTGATGGCGGTCGCCATCTTGTCCAGCCAGCCGAAGTTATCCATAAAGCCACGCACGTCG
54
+ TAGCAAGGCTTCACCAGCTTGTCATCGGGGTTAGGGATAGACAGATTGCCATCGGCTTCC
55
+ TGCTTCAGCAGGTAAATCTCGCACTCAATGCCGAGGTTCATGCCAAAGCCCATTTCAGC
56
+ >NODE_18_length_105_cov_26.990477
57
+ TCTTCGTTCGGTGCACCTGGGTCCAGCTGCTCGCGTATGCCTTCCAGACCGGCGGCCAAT
58
+ GCCAGCGTGGCAGCCAGATAAGGGTTCACGGCGCCATCCGCATTCCGGGATTCACAACGG
59
+ CCACCGCCCATGGGCACGCGTACCGAGTTGGTACG
60
+ >NODE_19_length_96_cov_24.291666
61
+ GGCATCTCCGGTGCGGGCAAATACGTGGAAATGCGCGCCGAAATGGATGTGGTGGTGCTG
62
+ ATCTCCAACTGCCCGCAACTGAATAACCCCTGCAATGCCTATAACCCGACGCCAGTTCGC
63
+ CTGCTGGTATGGGATGCCGTCTAGGC
64
+ >NODE_20_length_189_cov_24.730158
65
+ GGCGGGGCCAACCTGGCCGCGCTGTTTTACAACCCGGAAGACAAGCTGGAACGCTACAAC
66
+ ATGCCGGATTCGCTGAAGGCGCAGCATACGGCGTACCTCACCACCGGCAATGTCTGCTAT
67
+ TCCGACATGGGCCGCGTCATGTGTTCCATCATTGGCGATAGCGTGGGCTGGCACGATACC
68
+ TTCTGCGGCGTGACCGATGCCGCCATGATCGAAGCCCAGTATGGCAAGGCCACGTTTCA
69
+ >NODE_22_length_51_cov_24.686274
70
+ CTTTCCGTGTTGATAAAGCCGCGGGCGTTTTGCTCACACTGCGTGCGGCATACATCATCG
71
+ GGCGCGGCGGCCCCGGCATACCAGGCCGTGAGTTTTACTGC
72
+ >NODE_23_length_118_cov_48.813560
73
+ AAGCTGGCATGCAACCTGCTAGAGAATGACGGATACAACGGTCAGTTAGTGTCAGCCAAC
74
+ TGAATCAACCGCTCACCGGGACGGCCCGGTGAGATCTATACCCAGCGGGACGGCCCGCAC
75
+ AAGGTTAGTCATGTTTCATAAAGTGCTTATTGCGAACCGCGGCGAGAT
76
+ >NODE_25_length_101_cov_22.603960
77
+ CTGGAGGTCAACACCCGGCTGCAAGTGGAGCACGGCGTGACCGAGCTGGTAAGCGGCGTG
78
+ GACCTGGTGGGCTGGATGATCCGTCTCGCCGCAGGCGAGCACGACTTTATTGCGGCCTAT
79
+ CAGCATCAGCCTAAGGGCCATGCCATTCAGG
80
+ >NODE_27_length_51_cov_30.862745
81
+ TTTATTGCGGCCTATCAGCATCAGCCTAAGGGCCATGCCATTCAGGTGCGTGTGTATGCC
82
+ GAAGATGCCAACAAGCAGTTTCAGCCCAGCTCGGGCGTGCT
83
+ >NODE_28_length_204_cov_24.857843
84
+ GCCGAAGTGAAGAAAGGCCAGATATTCCGCATTCTGGACCTGGAAGGCAATCAGGCGGTG
85
+ GATACGCTTTTTTACAGCGCCGCTGATCCGGAAGAGCGCTACAGCGCGGTGGATACCATT
86
+ GCCCGCCAGCGGCAGCTTTACCTGACTACCGGCTCGGTGCTGTATTCGAGCGAAGGCCGG
87
+ CCCATGTTGACCATCACCGCGGATACCTGTGGCCGCCACGATACCCTGGGCGGGGCCTGT
88
+ GCCGCTGAGAGCAA
89
+ >NODE_29_length_96_cov_20.645834
90
+ TCCACGTATTTGCCCGCACCGGAGATGCCATCATCAAACTTGAGATGGCCATCGGCGGTG
91
+ ACCGGCACATTCATGAAGAAATTGATGTTGGCGGTAATGTCGCGCTTGCTCATGTGCCGG
92
+ TGCGTGGCACAGCCGCAATGGTTGAG
93
+ >NODE_30_length_126_cov_31.087301
94
+ TACGTGGAAGCCGCGCGCCACATTGAAGTGCAGATTTTTGGCGATGGCGCAGGTCATGTG
95
+ GTGGCGCTGGGCGAGCGCGATTGCTCGGTGCAGCGCCGCAACCAGAAGGTGATAGAAGAA
96
+ ACCCCGGCGCCCAATATCAGCGAGGCGATACGCCAGCAGCTGGCCGAGACAGCGGT
97
+ >NODE_32_length_51_cov_23.725491
98
+ GCGATACGCCAGCAGCTGGCCGAGACAGCGGTGCGTCTGGCCAGTGCCATCGGCTATCGC
99
+ TCGGCGGGCACGGTGGAATTTGTTTACGACAATGCCAGCGG
100
+ >NODE_33_length_174_cov_24.517241
101
+ TAATCCTGTATGGTGCTCATGACGCCGCCATCCAGCACATCCAGCGTGTGTGGGCGGTAA
102
+ ACAAAGCTGTTGAGGTAACGCGTGGTCTGCTGCCCGGCCGGGAATATGCTGTCGGCCAGC
103
+ ACCTGGCGCAGGTACTCCAAGTTGGTTTCAATGCCGGCGAGGCGGGTCTGGTCTAGCGCG
104
+ GTTTGCATGGATTGCACCGCAGCAGCGCGGTCACTGGCATGCAC
105
+ >NODE_34_length_54_cov_45.907406
106
+ AGCGCGGTTTGCATGGATTGCACCGCAGCAGCGCGGTCACTGGCATGCACCAGCACCTTG
107
+ GCCAGCAAGGGGTCGTAATACGGCGAAACCTCGCTGCCCTGCTC
108
+ >NODE_35_length_60_cov_52.799999
109
+ TCACGCATCTGTTGGGGAGTGGGGCCGATAAAGGCAATGCCTGCGGCTTCGCAGGCTTCG
110
+ GCAAAGCCGGGGTTTTCAGACAGAAAGCCATAGCCCGGATGGATGGCTTG
111
+ >NODE_36_length_51_cov_26.823530
112
+ CCGACGCCAGTTCGCCTGCTGGTATGGGATGCCGTCTAGGCCACCACGCAGAAGCTGGCA
113
+ TGCAACCTGCTAGAGAATGACGGATACAACGGTCAGTTAGT
114
+ >NODE_37_length_99_cov_26.727272
115
+ TTCATGCCAAAGCCCATTTCAGCGGCCTGTGCCAGCACGTTTTTCAGTGCGACGCGGGTG
116
+ TTCAGCGCATAGGGCTCGCCCTGAAAGCCATTGTCTGCGGGCATCCAGGCCACTTTTGGT
117
+ TCCCATGGCAAGGGAATGATATGGTCCAG
118
+ >NODE_38_length_148_cov_23.344595
119
+ GCATACCAGGCCGTGAGTTTTACTGCAGCCGGTTTGTATTCGGTGGCAGGATCTAGCGGA
120
+ TGCGGCGCGGCAGATAACACCAGCAACACGTTCATGTCGAAGCGCACATCCACATAATCG
121
+ CCCGCCTTGCTATGGCCGGTGACAAAGCTCAGCGCACCGTTGTCATCCGGCACCGCCTTG
122
+ CTGAAAAAATTGACGTTG
123
+ >NODE_40_length_87_cov_21.885057
124
+ AGCGCACCGTTGTCATCCGGCACCGCCTTGCTGAAAAAATTGACGTTGGCAACCAGATCG
125
+ CGCTTGCCCAGACCGTATTTCGCCAGTTCCACCAGCAGGCCATCCTTGCCGCTGCGGTGC
126
+ ATGGCATTGCGGTGGGT
127
+ >NODE_41_length_135_cov_46.355556
128
+ AAAAGAGACAAGGACAAAAGCATGAGTGCTGTATTTGAACCTGCTGCCGTGCTGTGGGAA
129
+ GAAACCATCCCCGGCGGCAATCACTGGTCAGGCCTGATACGCCGAGGCACTGCGCTGCGT
130
+ ATCACCGACCTGGAGGGCGGGGCCAACCTGGCCGCGCTGTTTTACAACCCGGAAGACAAG
131
+ CTGGA
132
+ >NODE_42_length_75_cov_26.973333
133
+ ATGGATAACTTCGGCTGGCTGGACAAGATGGCGACCGCCATCAACGACCTGGGCTGGGAT
134
+ CTGTATTCGTTTGACCACGAGGACGGCAACAGCCAGTTCGAGTTTGACTTCAACTACAGC
135
+ GATGC
136
+ >NODE_43_length_75_cov_44.013332
137
+ CACGAGGACGGCAACAGCCAGTTCGAGTTTGACTTCAACTACAGCGATGCGCTGACCATG
138
+ TGCGACCGCTTCACCTTCTTCCGTTACATGGCCAAGCACTACGCCAAGGAAGAGGGCCTG
139
+ CTGGC
140
+ >NODE_44_length_57_cov_53.122807
141
+ CGGGATTCACAACGGCCACCGCCCATGGGCACGCGTACCGAGTTGGTACGGTTGTTGGAG
142
+ CCGTAGGAGTTGAATACCGGCGCCCAGCTGAAGTAGCTCATGGCACC
143
+ >NODE_46_length_267_cov_25.217228
144
+ AGATGCTGGCGCAGCATGTCGTTGATGGCTTGCGAGCGGCTTTCGAATCCCCGCTCAATC
145
+ ACCATGGAATCGAGCTCGGCATGCAGTTCATCCGGCAAGGAGATACTGATGCGATTTACC
146
+ GGTGCCTTTTTGTTTTTCTCGTTCATGTTTCCTCCTGTGTGACTTGCCGGTTTGGCGCGA
147
+ CCAAAGGCGCCATCATGGCAGACCGAAGCAGGCCTTGCAGCCTGCCCCGTCAACACCTCG
148
+ GCTTAGAACATGTAGCTGTAACGATCAATTTCCCACTGGCTCACGGTCAGGTGGTAGGTT
149
+ TCCCATTCCTGGCTCTT
150
+ >NODE_47_length_51_cov_25.784313
151
+ ACCTTGGCCAGCAAGGGGTCGTAATACGGCGAAACCTCGCTGCCCTGCTCTACCCAGGCA
152
+ TCCACCCGCACATCGGAGGGGAACACCACTTCGGTCAGCAC
153
+ >NODE_53_length_51_cov_26.156862
154
+ TGCCGGTGCGTGGCACAGCCGCAATGGTTGAGCGCATGCATGAAACTGTCGCGGCAGCTG
155
+ TGCATGGGGCGCTTTTCCAGGGCATAGCGCACGGTGTTGCT
156
+ >NODE_55_length_65_cov_23.953846
157
+ ACGGCAGCAGGTTCAAATACAGCACTCATGCTTTTGTCCTTGTCTCTTTTTCCCGTTATT
158
+ GCCCCGCCTTGCGGGCCTTGGGCGTCATCGGGTGTAACGGCGGGATAACCGCCCC
159
+ >NODE_57_length_124_cov_22.322580
160
+ CTTGGGCGTCATCGGGTGTAACGGCGGGATAACCGCCCCCATCAGTTGCAACTTGCCGGT
161
+ AATCACACCACGCAACGCGATGATCTCATTCGCCACGGCCTGCACGGTGAGTGCCGGGCC
162
+ TTGGACCAGTATCACTTCCATGGTCTGGTTATCGGCCAGATGCACGTGCAGCGA
163
+ >NODE_59_length_78_cov_30.179487
164
+ TGCACGTGCAGCGAGCTGATCACTTCATCCAGATGCTGGTACTGCAAATCTGCAATGGTT
165
+ TTTTGCAGGCCGCGCGTGCCATTGTTGTAAAGAATGGTGATGGTACCCACCATGACCTCA
166
+ TTGCCTTT
167
+ >NODE_61_length_69_cov_45.028984
168
+ GGATTCGAAAGCCGCTCGCAAGCCATCAACGACATGCTGCGCCAGCATCTGGCCGAGCAT
169
+ AAGCGTGAAAAAGGCAATGAGGTCATGGTGGGTACCATCACCATTCTTTACAACAATGG
170
+ >NODE_64_length_51_cov_13.745098
171
+ CTTCGGCCATCCAGGGGTCGCCGGCATCGCATACCTGGTCCAGCACGGCGTTGCGCGGAT
172
+ CCAATGGGCTTTCGGTCAGCATCTGGCTCATAGGTAATACC
173
+ >NODE_65_length_84_cov_14.511905
174
+ GCTGGCTCCGAGCGCTACACCGGCTACGCGCTGGATGGCCTGGGCCAGGCACCAAGCGAT
175
+ GATGAACTGACCTCGGTTCCTGATCTGGACCATATCATTCCCTTGCCATGGGAACCAAAA
176
+ GTGGCCTGGATGCC
177
+ >NODE_66_length_63_cov_46.888889
178
+ GGCTATCGCTCGGCGGGCACGGTGGAATTTGTTTACGACAATGCCAGCGGCGACTTTTAC
179
+ TTTCTGGAGGTCAACACCCGGCTGCAAGTGGAGCACGGCGTGACCGAGCTGGT
180
+ >NODE_67_length_53_cov_17.339622
181
+ CCATGGGGCCGGAAGGCGGCACGCCGATGTTCCAGTAGCCGGTGCGGCCGGGGTAATCCT
182
+ GTATGGTGCTCATGACGCCGCCATCCAGCACATCCAGCGTGTG
183
+ >NODE_70_length_288_cov_27.302084
184
+ GAGCCGTAGGAGTTGAATACCGGCGCCCAGCTGAAGTAGCTCATGGCACCACGGCGCACC
185
+ AGGCGCTTGTAGCTGTTGACCGTAGGCGCAAACGCGGCACACAGGGCCGGGCCGTGCTTG
186
+ AGAATACCGGCGATGAACTGGTAGCCCAGCGTGGTCAAGCCCAGGCCGCGTGGATCATCC
187
+ TTGGGATCGCAGGCAAACAGGTTCTTGCCGGTCTTGAGGTCGTACAGCGACATGTTGAAG
188
+ TGCGCGCCAGTGCCGGTCTTGTCGGCAAACGGCTTGGGCATCATGGTCGCCAGCAGGCCC
189
+ TCTTCCTTGGCGTAGTGCTTGGCCATGTAACGGAAGAA
190
+ >NODE_71_length_129_cov_27.193798
191
+ GCTGAAATGGGCTTTGGCATGAACCTCGGCATTGAGTGCGAGATTTACCTCCTGAAGCAG
192
+ GAATCCGATGGCAAGCTGTCTATCCCTAACCCCGATGACAAGCTGGTCAAGCCTTGCTAC
193
+ GACGTACGCGGCTTTATGGATAACTTCGGCTGGCTGGACAAGATGGCGACCGCCATCAA
194
+ >NODE_72_length_75_cov_32.453335
195
+ ATGGATAACTTCGGCTGGCTGGACAAGATGGCGACCGCCATCAACGACCTCGGCTGGGAT
196
+ CTGTATTCGTTTGATCACGAGGACGGCAACAGCCAGTTCGAGTTTGACTTCAACTACAGC
197
+ GATGC
198
+ >NODE_73_length_96_cov_22.000000
199
+ GCCTAGACGGCATCCCATACCAGCAGGCGAACTGGCGTCGGGTTATAGGCGTTGCAGGGG
200
+ TTATTCAGTTGCGGGCAGTTGGAGATCAGCACCACGACATCCATTTCGGCGCGCATTTCC
201
+ ACGTATTTGCCCGCACCGGAGATGCC
202
+ >NODE_74_length_99_cov_23.818182
203
+ CTGGACCATATCATTCCCTTGCCATGGGAACCAAAAGTGGCCTGGATGCCTGCTGACAAT
204
+ GGCTTTCAGGGCGAACCCTATGCCCTGAACACCCGCGTGGCACTGAAAAACGTGCTGGCA
205
+ CAGGCCGCTGAAATGGGCTTTGGCATGAA
206
+ >NODE_75_length_148_cov_26.506756
207
+ CAACGTCAATTTTTTCAGCAAGGCGGTGCCGGATGACAACGGTGCGCTGAACTTTGTCGC
208
+ CGGGCATAGCAAGGCGGGCGATTATGTGGATGTGCGCTTCGACATGAACGTGCTGCTGGT
209
+ GCTATCTGCCGCGCCGCATCCGCTAGACCCTGCCACCGAATACAAACCGGCTGCAGTAAA
210
+ ACTCACGGCCTGGTATGC
211
+ >NODE_76_length_124_cov_26.887096
212
+ TCGCTGCACGTGCATCTGGCCGATAACCAGACCATGGAAGTGATACTGGTACAAGGCCCG
213
+ GCACTCACCGTGCAGGCCGTGGCGAATGAGATCATCGCGCTGCGTGGCGTGATTACCGGC
214
+ AAGCTGCAACTGATGGGGGCGGTTATCCCGCCGTTACACCCGATGACGCCCAAG
215
+ >NODE_77_length_65_cov_24.261538
216
+ GGGGCGGTTATCCCGCCGTTACACCCGATGACGCCCAAGGCCCGCAAGGCTGGGCAATAA
217
+ CGCGGAAAAGAGACAAGGACAAAAGCATGAGTGCTGTATTTGAACCTGCTGCCGT
218
+ >NODE_78_length_91_cov_25.835165
219
+ CGTGGCATTCAATTCCTGCCGCAAACCCTGCAGGAAGCGGTTGAGGCATTTGCTGCCGAT
220
+ CCGCTGGTGGAAAAAACCCTGGGCAAGGAGCTGCGTGACGAGTTTGTCACCTACAAGAGC
221
+ CAGGAATGGGAAACCTACCAC
222
+ >NODE_79_length_78_cov_19.423077
223
+ TGCACGTGCAGCGAGCTGATCACTTCATCCAGATGCTGGTACTGCAAATCCGCAATGGTT
224
+ TTTTGCAGGCCTCGCGTACCATTGTTGTAAAGAATGGTGATGGTACCCACCATGACCTCA
225
+ TTGCCTTT
226
+ >NODE_80_length_51_cov_18.254902
227
+ GGCAGGAATTGAATGCCACGGCCCATGCGCTCTTCTTCGCTGATGGCGTACAGGTTGTCT
228
+ TCGTTCGGTGCACCTGGGTCCAGCTGCTCGCGTATGCCTTC
229
+ >NODE_81_length_105_cov_20.038095
230
+ TCTTCGTTCGGTGCACCTGGGTCCAGCTGCTCGCGTATGCCTTCCAGACCAGCGGCCAAT
231
+ GCCAGCGTGGCAGCCAGATAAGGATTCACGGCACCATCCGCATTGCGGGATTCACAACGG
232
+ CCACCGCCCATGGGCACGCGTACCGAGTTGGTACG
233
+ >NODE_82_length_237_cov_22.341772
234
+ ACAAGGTTAGTCATGTTTCATAAAGTGCTTATTGCGAACCGCGGCGAGATTGCTTGCCGC
235
+ ATCATTCGTACCCTCAAGCAGCTTGGTGTTCGCTCAGTAGCCGTCTATTCCGAAGCCGAT
236
+ GCCGGTGCACGCCATGTGCTGGAGGCAGATGAGGCAGTCTGTGTCGGCCCGGCACCCGCC
237
+ GCCGAGAGTTACCTGAATATTCCTGCCATCCTGCAAGCGGCGCACCAGACTGGTGCACAA
238
+ GCCATCCATCCGGGCTATGGCTTTCTGTCTGAAAACCCCGGCTTTGC
239
+ >NODE_83_length_126_cov_24.801588
240
+ ACCGCTGTCTCGGCCAGCTGCTGGCGTATCGCCTCGCTGATATTGGGCGCAGGGGTTTCT
241
+ TCTATCACCTTCTGGTTGCGGCGCTGCACCGAACAATCGCGCTCACCCAGCGCCACCACA
242
+ TGCCCGGCGCCATCGCCAAAAATCTGCACTTCAATGTGGCGCGCGGCTTCCACGTA
243
+ >NODE_84_length_174_cov_24.965517
244
+ GTGCATGCCAGTGACCGCGCTGCTGCGGTGCAATCCATGCAAACCGCGCTCGACCAGACC
245
+ CGCCTCGCCGGCATTGAAACCAACCTGGAGTACCTGCGTCAGGTGCTGGCCGACAGCGTA
246
+ TTCCCGGCAGGGCAGCAGACCACGCGCTACCTCAACAGCTTTGTTTACCGTCCGCACACG
247
+ CTGGATGTGCTGGATGGCGGCGTCATGAGCACCATACAGGATTA
248
+ >NODE_85_length_51_cov_24.941177
249
+ GAAGCCGCAGGCATTGCCTTTATCGGCCCCACTCCCCAACAGATGCGTGATTTTGGTCTC
250
+ AAGCACACCGCCCGCGCGCTGGCCGAGGCCAATGGCGTGCC
251
+ >NODE_87_length_51_cov_14.313725
252
+ AGCAACACCGTGCGCTATGCCCTGGAAAAGCGCCCCATGCACAGCTGCCGTGACAGTTTC
253
+ ATGCATGCGCTCAACCATTGCGGCTGTGCCACGCACCGGCA
254
+ >NODE_88_length_267_cov_24.277153
255
+ AGATGCTGGCGCAGCATGTCGTTGATGGCTTGCGAGCGGCTTTCGAATCCGCGCTCAATC
256
+ ACCATGGAATCAAGCTCGGCATGCAGCTCATCCGGCAAGGAGATACTGATGCGATTTACC
257
+ GGTGCCTTTTTGCTTTTCTCGTTCATGTTTCCTCCTGTGTGACTTGCCGGTTTGGCGCGA
258
+ CTAAAGGCGCCATCATGGCAGACCGGGGAAGGCCTTGCAGCCTGCCCCGTCAACACCTTG
259
+ GCTTAGAACATGTAGCTGTAACGATCGATTTCCCACTGGCTCACGGTCAGGTGGTAGGTT
260
+ TCCCATTCCTGGCTCTT
261
+ >NODE_89_length_96_cov_20.604166
262
+ CTCAACCATTGCGGCTGTGCCACGCACCGGCACATGAGCAAGCGCGACATCACCGCCAAC
263
+ ATCAATTTCTTCATGAATGTGCCGGTCACCGCCGACGGCCATCTCAAGTTTGATGATGGC
264
+ ATCTCCGGTGCGGGCAAATACGTGGA
265
+ >NODE_90_length_101_cov_23.009901
266
+ CTGGAGGTCAACACCCGGCTGCAAGTGGAGCACGGCGTGACCGAGCTGGTGAGCGGCGTG
267
+ GACCTGGTGGGCTGGATGATCCGCCTGGCCGCAGGCGAGCGCGACTTTATTGCGGCCTAT
268
+ CAGCATCAGCCTAAGGGCCATGCCATTCAGG
269
+ >NODE_91_length_51_cov_15.941176
270
+ GCAGTAAAACTCACGGCCTGGTATGCCGGGGCCGCCGCGCCCGATGATGTGTGCCGCACG
271
+ CAGTGTGAGCAAAACGCCCGCGGCTTTATCAACACGGAAAG
272
+ >NODE_92_length_102_cov_23.372549
273
+ CTGCCGGGCACCGGCCTGCTGGCAGATGTCGCCGAAGCCCGCACGCATGCGGCACGCATC
274
+ GGCTACCCGGTGATGCTGAAGAGCACGGCAGGTGGTGGCGGTATCGGCATGCGCCTGATC
275
+ TGGGGCGAAGAGGAACTGGCCGAAGCCTTTGC
276
+ >NODE_93_length_51_cov_24.568628
277
+ CCGCTGGCATTGTCGTAAACAAATTCCACCGTGCCCGCCGAGCGATAGCCTATGGCACTG
278
+ GCCAGACGCACCGCTGTCTCGGCCAGCTGCTGGCGTATCGC
279
+ >NODE_94_length_51_cov_25.686274
280
+ TTTATTGCGGCCTATCAGCATCAGCCTAAGGGCCATGCCATTCAGGTGCGGGTGTATGCC
281
+ GAAGATGCCAACAAGCAGTTTCAGCCCAGCTCGGGCGTGCT
282
+ >NODE_95_length_51_cov_22.529411
283
+ ACTAACTGACCGTTGTATCCGTCATTCTCTAGCAGGTTGCATGCCAGCTTGTGCGTGGTG
284
+ GCCTAGACGGCATCCCATACCAGCAGGCGAACTGGCGTCGG
285
+ >NODE_96_length_51_cov_23.549019
286
+ CTTCGGCCATCCAGGGGTCGCCGGCATCGCATACCTGGTCCAGCACGGCGCTGCGCGGAT
287
+ CCAATGGGCTTTCGGTCAGCATCTGGCTCATAGGTAATACC
288
+ >NODE_97_length_54_cov_26.703703
289
+ GCGGCTTCCACGTATTTTTCCAGATAAAGGCCGGATTCCTTGAAATTGGCACGCGACAGG
290
+ CGCTGCACCGAGGCAAAGGCTTCGGCCAGTTCCTCTTCGCCCCA
291
+ >NODE_98_length_51_cov_24.529411
292
+ ACCTTGGCCAGCAAGGGGTCGTAATACGGCGAAACCTCGCTGCCCTGCTCCACCCAGGCA
293
+ TCCACCCGCACATCGGAGGGGAACACCACTTCGGTCAGCAC
294
+ >NODE_99_length_51_cov_22.588236
295
+ TTGGTCTCAAGCACACCGCCCGCGCGCTGGCCGAGGCCAATGGCGTGCCATTGCTGCCGG
296
+ GCACCGGCCTGCTGGCAGATGTCGCCGAAGCCCGCACGCAT
@@ -0,0 +1,100 @@
1
+ ID lgth out in long_cov short1_cov short1_Ocov short2_cov short2_Ocov long_nb short1_nb short2_nb
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3
+ 2 51 2 2 0.000000 71.372549 71.372549 0.000000 0.000000 0 74 0
4
+ 3 87 1 1 0.000000 43.356322 43.356322 0.000000 0.000000 0 64 0
5
+ 4 204 1 1 0.000000 44.617647 44.617647 0.000000 0.000000 0 91 0
6
+ 5 54 1 1 0.000000 25.037037 25.037037 0.000000 0.000000 0 35 0
7
+ 6 18 2 2 0.000000 54.722222 54.722222 0.000000 0.000000 0 40 0
8
+ 7 102 1 1 0.000000 27.735294 27.735294 0.000000 0.000000 0 45 0
9
+ 8 237 1 1 0.000000 29.637131 29.637131 0.000000 0.000000 0 87 0
10
+ 9 51 1 1 0.000000 28.039216 28.039216 0.000000 0.000000 0 24 0
11
+ 10 1 2 2 0.000000 54.000000 54.000000 0.000000 0.000000 0 29 0
12
+ 11 51 1 1 0.000000 20.803922 20.803922 0.000000 0.000000 0 23 0
13
+ 12 288 1 1 0.000000 25.437500 25.437500 0.000000 0.000000 0 78 0
14
+ 13 91 1 1 0.000000 21.835165 21.835165 0.000000 0.000000 0 24 0
15
+ 14 30 2 2 0.000000 45.000000 45.000000 0.000000 0.000000 0 33 0
16
+ 15 51 1 1 0.000000 25.176471 25.176471 0.000000 0.000000 0 24 0
17
+ 16 129 1 1 0.000000 28.604651 28.604651 0.000000 0.000000 0 39 0
18
+ 17 6 2 2 0.000000 43.166667 43.166667 0.000000 0.000000 0 25 0
19
+ 18 105 1 1 0.000000 26.990476 26.990476 0.000000 0.000000 0 43 0
20
+ 19 96 1 1 0.000000 24.291667 24.291667 0.000000 0.000000 0 34 0
21
+ 20 189 1 1 0.000000 24.730159 24.730159 0.000000 0.000000 0 54 0
22
+ 21 49 2 2 0.000000 45.714286 45.714286 0.000000 0.000000 0 42 0
23
+ 22 51 1 1 0.000000 24.686275 24.686275 0.000000 0.000000 0 27 0
24
+ 23 118 2 2 0.000000 48.813559 48.813559 0.000000 0.000000 0 87 0
25
+ 24 2 2 2 0.000000 47.000000 47.000000 0.000000 0.000000 0 27 0
26
+ 25 101 1 1 0.000000 22.603960 22.603960 0.000000 0.000000 0 33 0
27
+ 26 4 2 2 0.000000 60.250000 60.250000 0.000000 0.000000 0 35 0
28
+ 27 51 1 1 0.000000 30.862745 30.862745 0.000000 0.000000 0 28 0
29
+ 28 204 1 1 0.000000 24.857843 24.857843 0.000000 0.000000 0 64 0
30
+ 29 96 1 1 0.000000 20.645833 20.645833 0.000000 0.000000 0 36 0
31
+ 30 126 1 1 0.000000 31.087302 31.087302 0.000000 0.000000 0 51 0
32
+ 31 18 2 2 0.000000 45.277778 45.277778 0.000000 0.000000 0 29 0
33
+ 32 51 1 1 0.000000 23.725490 23.725490 0.000000 0.000000 0 21 0
34
+ 33 174 1 1 0.000000 24.517241 24.517241 0.000000 0.000000 0 53 0
35
+ 34 54 2 2 0.000000 45.907407 45.907407 0.000000 0.000000 0 54 0
36
+ 35 60 2 2 0.000000 52.800000 52.800000 0.000000 0.000000 0 45 0
37
+ 36 51 1 1 0.000000 26.823529 26.823529 0.000000 0.000000 0 29 0
38
+ 37 99 1 1 0.000000 26.727273 26.727273 0.000000 0.000000 0 34 0
39
+ 38 148 1 1 0.000000 23.344595 23.344595 0.000000 0.000000 0 45 0
40
+ 39 2 2 2 0.000000 43.500000 43.500000 0.000000 0.000000 0 26 0
41
+ 40 87 1 1 0.000000 21.885057 21.885057 0.000000 0.000000 0 25 0
42
+ 41 135 2 2 0.000000 46.355556 46.355556 0.000000 0.000000 0 90 0
43
+ 42 75 1 1 0.000000 26.973333 26.973333 0.000000 0.000000 0 27 0
44
+ 43 75 2 2 0.000000 44.013333 44.013333 0.000000 0.000000 0 51 0
45
+ 44 57 2 2 0.000000 53.122807 53.122807 0.000000 0.000000 0 57 0
46
+ 45 24 2 2 0.000000 44.750000 44.750000 0.000000 0.000000 0 19 0
47
+ 46 267 1 1 0.000000 25.217228 25.217228 0.000000 0.000000 0 83 0
48
+ 47 51 1 1 0.000000 25.784314 25.784314 0.000000 0.000000 0 29 0
49
+ 48 45 2 2 0.000000 44.133333 44.133333 0.000000 0.000000 0 53 0
50
+ 49 36 2 2 0.000000 51.083333 51.083333 0.000000 0.000000 0 44 0
51
+ 50 45 2 2 0.000000 39.155556 39.155556 0.000000 0.000000 0 44 0
52
+ 51 43 2 2 0.000000 43.209302 43.209302 0.000000 0.000000 0 46 0
53
+ 52 18 2 2 0.000000 59.055556 59.055556 0.000000 0.000000 0 35 0
54
+ 53 51 1 1 0.000000 26.156863 26.156863 0.000000 0.000000 0 24 0
55
+ 54 23 2 2 0.000000 43.565217 43.565217 0.000000 0.000000 0 37 0
56
+ 55 65 1 1 0.000000 23.953846 23.953846 0.000000 0.000000 0 31 0
57
+ 56 11 2 2 0.000000 46.363636 46.363636 0.000000 0.000000 0 30 0
58
+ 57 124 1 1 0.000000 22.322581 22.322581 0.000000 0.000000 0 38 0
59
+ 58 36 2 2 0.000000 55.861111 55.861111 0.000000 0.000000 0 39 0
60
+ 59 78 1 1 0.000000 30.179487 30.179487 0.000000 0.000000 0 39 0
61
+ 60 21 2 2 0.000000 46.761905 46.761905 0.000000 0.000000 0 24 0
62
+ 61 69 2 2 0.000000 45.028986 45.028986 0.000000 0.000000 0 49 0
63
+ 62 6 2 2 0.000000 65.166667 65.166667 0.000000 0.000000 0 34 0
64
+ 63 27 2 2 0.000000 59.259259 59.259259 0.000000 0.000000 0 51 0
65
+ 64 51 1 1 0.000000 13.745098 13.745098 0.000000 0.000000 0 12 0
66
+ 65 84 2 0 0.000000 14.511905 14.511905 0.000000 0.000000 0 40 0
67
+ 66 63 2 2 0.000000 46.888889 46.888889 0.000000 0.000000 0 56 0
68
+ 67 53 2 0 0.000000 17.339623 17.339623 0.000000 0.000000 0 23 0
69
+ 68 9 2 2 0.000000 52.444444 52.444444 0.000000 0.000000 0 29 0
70
+ 69 23 0 0 0.000000 4.652174 4.652174 0.000000 0.000000 0 11 0
71
+ 70 288 1 1 0.000000 27.302083 27.302083 0.000000 0.000000 0 103 0
72
+ 71 129 1 1 0.000000 27.193798 27.193798 0.000000 0.000000 0 63 0
73
+ 72 75 1 1 0.000000 32.453333 32.453333 0.000000 0.000000 0 46 0
74
+ 73 96 1 1 0.000000 22.000000 22.000000 0.000000 0.000000 0 29 0
75
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76
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80
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83
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84
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85
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86
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88
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89
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91
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92
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93
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94
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99
+ 98 51 1 1 0.000000 24.529412 24.529412 0.000000 0.000000 0 27 0
100
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