finishm 0.0.8 → 0.0.9
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/Rakefile +2 -1
- data/VERSION +1 -1
- data/bin/finishm +18 -18
- data/ext/mkrf_conf.rb +1 -1
- data/finishm.gemspec +23 -19
- data/lib/finishm/connect.rb +65 -0
- data/lib/priner.rb +3 -3
- data/spec/data/gapfilling/5/a.svg +1118 -0
- data/spec/data/gapfilling/5/reads.faVanswer.bam +0 -0
- data/spec/data/gapfilling/5/reads.faVanswer.bam.bai +0 -0
- data/spec/data/gapfilling/5/reads2.fa +17961 -0
- data/spec/data/gapfilling/5/to_gapfill.fa +2 -0
- data/spec/data/gapfilling/5/velvet23_3.5/Graph2 +8758 -0
- data/spec/data/gapfilling/5/velvet23_3.5/LastGraph +8337 -0
- data/spec/data/gapfilling/5/velvet23_3.5/Log +210 -0
- data/spec/data/gapfilling/5/velvet23_3.5/PreGraph +303 -0
- data/spec/data/gapfilling/5/velvet23_3.5/Roadmaps +20440 -0
- data/spec/data/gapfilling/5/velvet23_3.5/Sequences +20921 -0
- data/spec/data/gapfilling/5/velvet23_3.5/contigs.fa +296 -0
- data/spec/data/gapfilling/5/velvet23_3.5/stats.txt +100 -0
- data/spec/data/visualise/2_paired_end/a.svg +59 -0
- data/spec/data/wander/1/reference.broken.fa +4 -0
- data/spec/data/wander/1/reference.fa +2 -0
- data/spec/data/wander/1/reference_reads.fa +2004 -0
- metadata +23 -20
- data/ext/src/third-party/zlib-1.2.3/adler32.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/compress.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/crc32.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/deflate.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/example +0 -0
- data/ext/src/third-party/zlib-1.2.3/gzio.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/infback.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/inffast.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/inflate.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/inftrees.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/libz.a +0 -0
- data/ext/src/third-party/zlib-1.2.3/minigzip +0 -0
- data/ext/src/third-party/zlib-1.2.3/trees.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/uncompr.o +0 -0
- data/ext/src/third-party/zlib-1.2.3/zutil.o +0 -0
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA1:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 667e8e59b39401f9da3d1e8d8fc20e54edf4c8a2
|
|
4
|
+
data.tar.gz: 52d9f3995c2058058b623112961262817e7bce74
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 18cbfff08690641b7767fbb6dbc10268a6a6fcdba5fff56a484a596e318ea46a57a8e7650ccd74fa9859f84e970a3f9c8c8ab1c335fe7a46d44a56792f2d175f
|
|
7
|
+
data.tar.gz: d233480875faa70a9d4c1b1fc0cf13cbec848af676c3b5005d5c0bc9230d0287cbda14859337c898065805ad9a59ee5b05d0722ccba5fa9fe8c59cc407d9219b
|
data/Rakefile
CHANGED
|
@@ -16,7 +16,8 @@ Jeweler::Tasks.new do |gem|
|
|
|
16
16
|
# gem is a Gem::Specification... see http://docs.rubygems.org/read/chapter/20 for more options
|
|
17
17
|
gem.name = "finishm"
|
|
18
18
|
gem.homepage = "http://github.com/wwood/finishm"
|
|
19
|
-
gem.license = "
|
|
19
|
+
gem.license = "GPL-3.0+"
|
|
20
|
+
gem.required_ruby_version = '~> 2.3'
|
|
20
21
|
gem.summary = %Q{Genome improvement and finishing with or without further sequencing effort}
|
|
21
22
|
gem.description = %Q{De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving these draft assemblies.}
|
|
22
23
|
gem.email = "donttrustben near gmail.com"
|
data/VERSION
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
0.0.
|
|
1
|
+
0.0.9
|
data/bin/finishm
CHANGED
|
@@ -28,13 +28,13 @@ global = OptionParser.new do |opts|
|
|
|
28
28
|
wander\tTry to connect contigs (experimental)
|
|
29
29
|
gapfill\tFill assembly gaps (N characters) (experimental)
|
|
30
30
|
explore\tWhat happens in the graph beyond the end of my contig(s)? (experimental)
|
|
31
|
+
"+ # primer stuff is not really ready and requires bio-primer3 to be released.
|
|
32
|
+
# Commands for PCR finishing:
|
|
31
33
|
|
|
32
|
-
|
|
33
|
-
|
|
34
|
-
|
|
35
|
-
|
|
36
|
-
finish\tprocess results from multi-primer multi-lane PCR experimental setup (experimental)
|
|
37
|
-
|
|
34
|
+
# primers\tdesign primers for multi-primer multi-lane PCR experimental setup (experimental)
|
|
35
|
+
# primers_check\ttest a set of primers for incompatibility (experimental)
|
|
36
|
+
# finish\tprocess results from multi-primer multi-lane PCR experimental setup (experimental)
|
|
37
|
+
"
|
|
38
38
|
Utility modes:
|
|
39
39
|
|
|
40
40
|
sequence\tGiven a defined sequence of nodes, what is the corresponding sequence?
|
|
@@ -46,18 +46,18 @@ global.order!
|
|
|
46
46
|
|
|
47
47
|
operator = nil
|
|
48
48
|
subcommands = {
|
|
49
|
-
'primers' => lambda {OptionParser.new do |opts|
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
end},
|
|
53
|
-
'primers_check' => lambda {OptionParser.new do |opts|
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
end},
|
|
57
|
-
'finish' => lambda {OptionParser.new do |opts|
|
|
58
|
-
|
|
59
|
-
|
|
60
|
-
end},
|
|
49
|
+
# 'primers' => lambda {OptionParser.new do |opts|
|
|
50
|
+
# operator = Bio::FinishM::Primers.new
|
|
51
|
+
# operator.add_options(opts, options)
|
|
52
|
+
# end},
|
|
53
|
+
# 'primers_check' => lambda {OptionParser.new do |opts|
|
|
54
|
+
# operator = Bio::FinishM::Primers::Checker.new
|
|
55
|
+
# operator.add_options(opts, options)
|
|
56
|
+
# end},
|
|
57
|
+
# 'finish' => lambda {OptionParser.new do |opts|
|
|
58
|
+
# operator = Bio::FinishM::Finisher.new
|
|
59
|
+
# operator.add_options(opts, options)
|
|
60
|
+
# end},
|
|
61
61
|
'gapfill' => lambda {OptionParser.new do |opts|
|
|
62
62
|
operator = Bio::FinishM::GapFiller.new
|
|
63
63
|
operator.add_options(opts, options)
|
data/ext/mkrf_conf.rb
CHANGED
|
@@ -25,7 +25,7 @@ path_external = File.join(File.dirname(__FILE__), "../lib/external")
|
|
|
25
25
|
task :compile do
|
|
26
26
|
cd(File.join(File.dirname(__FILE__),'src')) do
|
|
27
27
|
#sh "patch -p1 < ../bioruby.patch"
|
|
28
|
-
case
|
|
28
|
+
case RbConfig::CONFIG['host_os']
|
|
29
29
|
when /linux/
|
|
30
30
|
|
|
31
31
|
# Create library with default install params
|
data/finishm.gemspec
CHANGED
|
@@ -2,17 +2,17 @@
|
|
|
2
2
|
# DO NOT EDIT THIS FILE DIRECTLY
|
|
3
3
|
# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
|
|
4
4
|
# -*- encoding: utf-8 -*-
|
|
5
|
-
# stub: finishm 0.0.
|
|
5
|
+
# stub: finishm 0.0.9 ruby lib
|
|
6
6
|
# stub: ext/mkrf_conf.rb
|
|
7
7
|
|
|
8
8
|
Gem::Specification.new do |s|
|
|
9
9
|
s.name = "finishm"
|
|
10
|
-
s.version = "0.0.
|
|
10
|
+
s.version = "0.0.9"
|
|
11
11
|
|
|
12
12
|
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
|
13
13
|
s.require_paths = ["lib"]
|
|
14
14
|
s.authors = ["Ben J. Woodcroft"]
|
|
15
|
-
s.date = "2016-08-
|
|
15
|
+
s.date = "2016-08-21"
|
|
16
16
|
s.description = "De-novo assemblies generally only provide draft genomes. FinishM is aimed at improving these draft assemblies."
|
|
17
17
|
s.email = "donttrustben near gmail.com"
|
|
18
18
|
s.executables = ["finishm"]
|
|
@@ -111,7 +111,6 @@ Gem::Specification.new do |s|
|
|
|
111
111
|
"ext/src/third-party/zlib-1.2.3/Makefile.in",
|
|
112
112
|
"ext/src/third-party/zlib-1.2.3/README",
|
|
113
113
|
"ext/src/third-party/zlib-1.2.3/adler32.c",
|
|
114
|
-
"ext/src/third-party/zlib-1.2.3/adler32.o",
|
|
115
114
|
"ext/src/third-party/zlib-1.2.3/algorithm.txt",
|
|
116
115
|
"ext/src/third-party/zlib-1.2.3/amiga/Makefile.pup",
|
|
117
116
|
"ext/src/third-party/zlib-1.2.3/amiga/Makefile.sas",
|
|
@@ -120,7 +119,6 @@ Gem::Specification.new do |s|
|
|
|
120
119
|
"ext/src/third-party/zlib-1.2.3/as400/readme.txt",
|
|
121
120
|
"ext/src/third-party/zlib-1.2.3/as400/zlib.inc",
|
|
122
121
|
"ext/src/third-party/zlib-1.2.3/compress.c",
|
|
123
|
-
"ext/src/third-party/zlib-1.2.3/compress.o",
|
|
124
122
|
"ext/src/third-party/zlib-1.2.3/configure",
|
|
125
123
|
"ext/src/third-party/zlib-1.2.3/contrib/README.contrib",
|
|
126
124
|
"ext/src/third-party/zlib-1.2.3/contrib/ada/buffer_demo.adb",
|
|
@@ -248,11 +246,8 @@ Gem::Specification.new do |s|
|
|
|
248
246
|
"ext/src/third-party/zlib-1.2.3/contrib/vstudio/vc8/zlibvc.vcproj",
|
|
249
247
|
"ext/src/third-party/zlib-1.2.3/crc32.c",
|
|
250
248
|
"ext/src/third-party/zlib-1.2.3/crc32.h",
|
|
251
|
-
"ext/src/third-party/zlib-1.2.3/crc32.o",
|
|
252
249
|
"ext/src/third-party/zlib-1.2.3/deflate.c",
|
|
253
250
|
"ext/src/third-party/zlib-1.2.3/deflate.h",
|
|
254
|
-
"ext/src/third-party/zlib-1.2.3/deflate.o",
|
|
255
|
-
"ext/src/third-party/zlib-1.2.3/example",
|
|
256
251
|
"ext/src/third-party/zlib-1.2.3/example.c",
|
|
257
252
|
"ext/src/third-party/zlib-1.2.3/examples/README.examples",
|
|
258
253
|
"ext/src/third-party/zlib-1.2.3/examples/fitblk.c",
|
|
@@ -265,22 +260,15 @@ Gem::Specification.new do |s|
|
|
|
265
260
|
"ext/src/third-party/zlib-1.2.3/examples/zpipe.c",
|
|
266
261
|
"ext/src/third-party/zlib-1.2.3/examples/zran.c",
|
|
267
262
|
"ext/src/third-party/zlib-1.2.3/gzio.c",
|
|
268
|
-
"ext/src/third-party/zlib-1.2.3/gzio.o",
|
|
269
263
|
"ext/src/third-party/zlib-1.2.3/infback.c",
|
|
270
|
-
"ext/src/third-party/zlib-1.2.3/infback.o",
|
|
271
264
|
"ext/src/third-party/zlib-1.2.3/inffast.c",
|
|
272
265
|
"ext/src/third-party/zlib-1.2.3/inffast.h",
|
|
273
|
-
"ext/src/third-party/zlib-1.2.3/inffast.o",
|
|
274
266
|
"ext/src/third-party/zlib-1.2.3/inffixed.h",
|
|
275
267
|
"ext/src/third-party/zlib-1.2.3/inflate.c",
|
|
276
268
|
"ext/src/third-party/zlib-1.2.3/inflate.h",
|
|
277
|
-
"ext/src/third-party/zlib-1.2.3/inflate.o",
|
|
278
269
|
"ext/src/third-party/zlib-1.2.3/inftrees.c",
|
|
279
270
|
"ext/src/third-party/zlib-1.2.3/inftrees.h",
|
|
280
|
-
"ext/src/third-party/zlib-1.2.3/inftrees.o",
|
|
281
|
-
"ext/src/third-party/zlib-1.2.3/libz.a",
|
|
282
271
|
"ext/src/third-party/zlib-1.2.3/make_vms.com",
|
|
283
|
-
"ext/src/third-party/zlib-1.2.3/minigzip",
|
|
284
272
|
"ext/src/third-party/zlib-1.2.3/minigzip.c",
|
|
285
273
|
"ext/src/third-party/zlib-1.2.3/msdos/Makefile.bor",
|
|
286
274
|
"ext/src/third-party/zlib-1.2.3/msdos/Makefile.dj2",
|
|
@@ -303,9 +291,7 @@ Gem::Specification.new do |s|
|
|
|
303
291
|
"ext/src/third-party/zlib-1.2.3/qnx/package.qpg",
|
|
304
292
|
"ext/src/third-party/zlib-1.2.3/trees.c",
|
|
305
293
|
"ext/src/third-party/zlib-1.2.3/trees.h",
|
|
306
|
-
"ext/src/third-party/zlib-1.2.3/trees.o",
|
|
307
294
|
"ext/src/third-party/zlib-1.2.3/uncompr.c",
|
|
308
|
-
"ext/src/third-party/zlib-1.2.3/uncompr.o",
|
|
309
295
|
"ext/src/third-party/zlib-1.2.3/win32/DLL_FAQ.txt",
|
|
310
296
|
"ext/src/third-party/zlib-1.2.3/win32/Makefile.bor",
|
|
311
297
|
"ext/src/third-party/zlib-1.2.3/win32/Makefile.emx",
|
|
@@ -320,7 +306,6 @@ Gem::Specification.new do |s|
|
|
|
320
306
|
"ext/src/third-party/zlib-1.2.3/zlib.h",
|
|
321
307
|
"ext/src/third-party/zlib-1.2.3/zutil.c",
|
|
322
308
|
"ext/src/third-party/zlib-1.2.3/zutil.h",
|
|
323
|
-
"ext/src/third-party/zlib-1.2.3/zutil.o",
|
|
324
309
|
"finishm.gemspec",
|
|
325
310
|
"lib/assembly/a_b_visualiser.rb",
|
|
326
311
|
"lib/assembly/acyclic_connection_finder.rb",
|
|
@@ -357,6 +342,7 @@ Gem::Specification.new do |s|
|
|
|
357
342
|
"lib/assembly/velvet_graph_sequence_extractor.rb",
|
|
358
343
|
"lib/external/VERSION",
|
|
359
344
|
"lib/finishm/assemble.rb",
|
|
345
|
+
"lib/finishm/connect.rb",
|
|
360
346
|
"lib/finishm/explore.rb",
|
|
361
347
|
"lib/finishm/finisher.rb",
|
|
362
348
|
"lib/finishm/fluff.rb",
|
|
@@ -456,9 +442,22 @@ Gem::Specification.new do |s|
|
|
|
456
442
|
"spec/data/gapfilling/4/HOWTO_recreate",
|
|
457
443
|
"spec/data/gapfilling/4/reads.fa.gz",
|
|
458
444
|
"spec/data/gapfilling/5/HOWTO_RECREATE",
|
|
445
|
+
"spec/data/gapfilling/5/a.svg",
|
|
459
446
|
"spec/data/gapfilling/5/answer.fna",
|
|
460
447
|
"spec/data/gapfilling/5/gappy.fna",
|
|
461
448
|
"spec/data/gapfilling/5/reads.fa",
|
|
449
|
+
"spec/data/gapfilling/5/reads.faVanswer.bam",
|
|
450
|
+
"spec/data/gapfilling/5/reads.faVanswer.bam.bai",
|
|
451
|
+
"spec/data/gapfilling/5/reads2.fa",
|
|
452
|
+
"spec/data/gapfilling/5/to_gapfill.fa",
|
|
453
|
+
"spec/data/gapfilling/5/velvet23_3.5/Graph2",
|
|
454
|
+
"spec/data/gapfilling/5/velvet23_3.5/LastGraph",
|
|
455
|
+
"spec/data/gapfilling/5/velvet23_3.5/Log",
|
|
456
|
+
"spec/data/gapfilling/5/velvet23_3.5/PreGraph",
|
|
457
|
+
"spec/data/gapfilling/5/velvet23_3.5/Roadmaps",
|
|
458
|
+
"spec/data/gapfilling/5/velvet23_3.5/Sequences",
|
|
459
|
+
"spec/data/gapfilling/5/velvet23_3.5/contigs.fa",
|
|
460
|
+
"spec/data/gapfilling/5/velvet23_3.5/stats.txt",
|
|
462
461
|
"spec/data/gapfilling/5/velvet51_3.5/LastGraph",
|
|
463
462
|
"spec/data/gapfilling/5/velvet51_3.5/Sequences",
|
|
464
463
|
"spec/data/gapfilling/6/random1.fa",
|
|
@@ -518,12 +517,16 @@ Gem::Specification.new do |s|
|
|
|
518
517
|
"spec/data/velvet_test_trails_reverse/reads_reversed.fa",
|
|
519
518
|
"spec/data/visualise/1/LastGraph",
|
|
520
519
|
"spec/data/visualise/2_paired_end/HOWTO_RECREATE.txt",
|
|
520
|
+
"spec/data/visualise/2_paired_end/a.svg",
|
|
521
521
|
"spec/data/visualise/2_paired_end/rand1.fa",
|
|
522
522
|
"spec/data/visualise/2_paired_end/rand2.fa",
|
|
523
523
|
"spec/data/visualise/2_paired_end/with_gaps.fa",
|
|
524
524
|
"spec/data/visualise/2_paired_end/with_gaps.read_pairs.fa.gz",
|
|
525
525
|
"spec/data/wander/1/random1.fa",
|
|
526
526
|
"spec/data/wander/1/random1.sammy.fa",
|
|
527
|
+
"spec/data/wander/1/reference.broken.fa",
|
|
528
|
+
"spec/data/wander/1/reference.fa",
|
|
529
|
+
"spec/data/wander/1/reference_reads.fa",
|
|
527
530
|
"spec/depth_first_search_spec.rb",
|
|
528
531
|
"spec/dijkstra_spec.rb",
|
|
529
532
|
"spec/explore_spec.rb",
|
|
@@ -558,7 +561,8 @@ Gem::Specification.new do |s|
|
|
|
558
561
|
"validation/gapfill_simulate_perfect.rb"
|
|
559
562
|
]
|
|
560
563
|
s.homepage = "http://github.com/wwood/finishm"
|
|
561
|
-
s.licenses = ["
|
|
564
|
+
s.licenses = ["GPL-3.0+"]
|
|
565
|
+
s.required_ruby_version = Gem::Requirement.new("~> 2.3")
|
|
562
566
|
s.rubygems_version = "2.5.1"
|
|
563
567
|
s.summary = "Genome improvement and finishing with or without further sequencing effort"
|
|
564
568
|
|
|
@@ -0,0 +1,65 @@
|
|
|
1
|
+
require 'tmpdir'
|
|
2
|
+
|
|
3
|
+
class Bio::FinishM::GapFiller
|
|
4
|
+
include Bio::FinishM::Logging
|
|
5
|
+
|
|
6
|
+
def add_options(optparse_object, options)
|
|
7
|
+
optparse_object.banner = "\nUsage: finishm distance --read-sets <set1.fasta>,<set2.fasta>[,<set3.fasta>...] <assembly-specification>
|
|
8
|
+
|
|
9
|
+
Takes two or more set of reads determines the minimum distance between in a de-Bruijn graph traversal.
|
|
10
|
+
|
|
11
|
+
example: finishm distance --read-sets gene1reads.fa,gene2reads.fa,gene3reads.fa --fastq-gz reads.1.fq.gz,reads.2.fq.gz
|
|
12
|
+
\n"
|
|
13
|
+
|
|
14
|
+
options.merge!({
|
|
15
|
+
:graph_search_leash_length => 20000,
|
|
16
|
+
})
|
|
17
|
+
|
|
18
|
+
optparse_object.separator "\nRequired arguments:\n\n"
|
|
19
|
+
optparse_object.on("--read-sets FILES", Array, "comma-separated list of fasta files containing read sets to connect [required]") do |arg|
|
|
20
|
+
options[:read_sets] = arg
|
|
21
|
+
end
|
|
22
|
+
|
|
23
|
+
optparse_object.separator "\nThere must be some definition of of how to do the assembly, or else a path to a previous assembly directory:\n\n"
|
|
24
|
+
Bio::FinishM::ReadInput.new.add_options(optparse_object, options)
|
|
25
|
+
Bio::FinishM::GraphGenerator.new.add_options optparse_object, options
|
|
26
|
+
|
|
27
|
+
optparse_object.separator "\nOptional graph search options:\n\n"
|
|
28
|
+
optparse_object.on("--leash-length NUM", Integer, "Don't explore too far in the graph, only this many base pairs and not (much) more [default: #{options[:graph_search_leash_length] }]") do |arg|
|
|
29
|
+
options[:graph_search_leash_length] = arg
|
|
30
|
+
end
|
|
31
|
+
end
|
|
32
|
+
|
|
33
|
+
def validate_options(options, argv)
|
|
34
|
+
#TODO: give a better description of the error that has occurred
|
|
35
|
+
#TODO: require reads options
|
|
36
|
+
if argv.length != 0
|
|
37
|
+
return "Dangling argument(s) found e.g. #{argv[0] }"
|
|
38
|
+
else
|
|
39
|
+
[
|
|
40
|
+
:read_sets,
|
|
41
|
+
].each do |sym|
|
|
42
|
+
if options[sym].nil?
|
|
43
|
+
return "No option found to specify #{sym}"
|
|
44
|
+
end
|
|
45
|
+
end
|
|
46
|
+
|
|
47
|
+
#if return nil from here, options all were parsed successfully
|
|
48
|
+
return Bio::FinishM::ReadInput.new.validate_options(options, [])
|
|
49
|
+
end
|
|
50
|
+
end
|
|
51
|
+
|
|
52
|
+
def run(options, argv)
|
|
53
|
+
# read in fasta file of read sets
|
|
54
|
+
|
|
55
|
+
# create a finishm graph with each of the reads in the read sets as probes
|
|
56
|
+
|
|
57
|
+
# Determine which nodes contain the reads, and choose two reads from each detected node as examples
|
|
58
|
+
|
|
59
|
+
# Dijkstra out from each of the probe nodes, ignoring direction
|
|
60
|
+
|
|
61
|
+
# Detemine connections between readsets given the minimum distances
|
|
62
|
+
|
|
63
|
+
# Output connectivity information
|
|
64
|
+
end
|
|
65
|
+
end
|
data/lib/priner.rb
CHANGED
|
@@ -51,9 +51,9 @@ require 'assembly/bubbly_assembler'
|
|
|
51
51
|
require 'assembly/bad_format_writer'
|
|
52
52
|
require 'assembly/height_finder'
|
|
53
53
|
|
|
54
|
-
require 'finishm/primers'
|
|
55
|
-
require 'finishm/primers_check'
|
|
56
|
-
require 'finishm/finisher'
|
|
54
|
+
#require 'finishm/primers' # Do not require as bio-primer3 has not been released.
|
|
55
|
+
#require 'finishm/primers_check'
|
|
56
|
+
#require 'finishm/finisher'
|
|
57
57
|
require 'finishm/gapfiller'
|
|
58
58
|
require 'finishm/wander'
|
|
59
59
|
require 'finishm/fluff'
|
|
@@ -0,0 +1,1118 @@
|
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8" standalone="no"?>
|
|
2
|
+
<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN"
|
|
3
|
+
"http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
|
|
4
|
+
<!-- Generated by graphviz version 2.26.3 (20100126.1600)
|
|
5
|
+
-->
|
|
6
|
+
<!-- Title: G Pages: 1 -->
|
|
7
|
+
<svg width="11708pt" height="11678pt"
|
|
8
|
+
viewBox="0.00 0.00 11708.06 11678.24" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
|
|
9
|
+
<g id="graph1" class="graph" transform="scale(1 1) rotate(0) translate(4 11674.2)">
|
|
10
|
+
<title>G</title>
|
|
11
|
+
<polygon fill="white" stroke="white" points="-4,5 -4,-11674.2 11705.1,-11674.2 11705.1,5 -4,5"/>
|
|
12
|
+
<!-- 1 -->
|
|
13
|
+
<g id="node1" class="node"><title>1</title>
|
|
14
|
+
<ellipse fill="none" stroke="black" cx="6007.52" cy="-2662.89" rx="142.128" ry="18.3848"/>
|
|
15
|
+
<text text-anchor="middle" x="6007.52" y="-2659.29" font-family="Times Roman,serif" font-size="14.00">n1_length131_coverage18</text>
|
|
16
|
+
</g>
|
|
17
|
+
<!-- 2 -->
|
|
18
|
+
<g id="node2" class="node"><title>2</title>
|
|
19
|
+
<ellipse fill="none" stroke="black" cx="5801.13" cy="-2914.4" rx="135.765" ry="18.3848"/>
|
|
20
|
+
<text text-anchor="middle" x="5801.13" y="-2910.8" font-family="Times Roman,serif" font-size="14.00">n2_length51_coverage71</text>
|
|
21
|
+
</g>
|
|
22
|
+
<!-- 1->2 -->
|
|
23
|
+
<g id="edge2" class="edge"><title>1->2</title>
|
|
24
|
+
<path fill="none" stroke="black" d="M5992.34,-2681.38C5956.19,-2725.44 5864.86,-2836.73 5822.86,-2887.91"/>
|
|
25
|
+
<polygon fill="black" stroke="black" points="5819.96,-2885.93 5816.33,-2895.88 5825.38,-2890.37 5819.96,-2885.93"/>
|
|
26
|
+
</g>
|
|
27
|
+
<!-- 3 -->
|
|
28
|
+
<g id="node3" class="node"><title>3</title>
|
|
29
|
+
<ellipse fill="none" stroke="black" cx="6040.98" cy="-3075.37" rx="135.765" ry="18.3848"/>
|
|
30
|
+
<text text-anchor="middle" x="6040.98" y="-3071.77" font-family="Times Roman,serif" font-size="14.00">n3_length87_coverage43</text>
|
|
31
|
+
</g>
|
|
32
|
+
<!-- 2->3 -->
|
|
33
|
+
<g id="edge6" class="edge"><title>2->3</title>
|
|
34
|
+
<path fill="none" stroke="black" d="M5828.18,-2932.55C5871.54,-2961.66 5956.66,-3018.78 6005.07,-3051.27"/>
|
|
35
|
+
<polygon fill="black" stroke="black" points="6003.41,-3054.37 6013.66,-3057.04 6007.31,-3048.56 6003.41,-3054.37"/>
|
|
36
|
+
</g>
|
|
37
|
+
<!-- 27 -->
|
|
38
|
+
<g id="node27" class="node"><title>27</title>
|
|
39
|
+
<ellipse fill="none" stroke="black" cx="5838" cy="-3230.98" rx="142.128" ry="18.3848"/>
|
|
40
|
+
<text text-anchor="middle" x="5838" y="-3227.38" font-family="Times Roman,serif" font-size="14.00">n27_length87_coverage22</text>
|
|
41
|
+
</g>
|
|
42
|
+
<!-- 2->27 -->
|
|
43
|
+
<g id="edge4" class="edge"><title>2->27</title>
|
|
44
|
+
<path fill="none" stroke="black" d="M5803.32,-2933.25C5809.88,-2989.56 5829.27,-3156.04 5835.82,-3212.22"/>
|
|
45
|
+
</g>
|
|
46
|
+
<!-- 99 -->
|
|
47
|
+
<g id="node99" class="node"><title>99</title>
|
|
48
|
+
<ellipse fill="none" stroke="black" cx="6103.9" cy="-3366.85" rx="135.765" ry="18.3848"/>
|
|
49
|
+
<text text-anchor="middle" x="6103.9" y="-3363.25" font-family="Times Roman,serif" font-size="14.00">n99_length2_coverage44</text>
|
|
50
|
+
</g>
|
|
51
|
+
<!-- 3->99 -->
|
|
52
|
+
<g id="edge10" class="edge"><title>3->99</title>
|
|
53
|
+
<path fill="none" stroke="black" d="M6045.01,-3094.05C6056.38,-3146.7 6088.58,-3295.87 6099.9,-3348.33"/>
|
|
54
|
+
</g>
|
|
55
|
+
<!-- 4 -->
|
|
56
|
+
<g id="node4" class="node"><title>4</title>
|
|
57
|
+
<ellipse fill="none" stroke="black" cx="7268.04" cy="-4810.11" rx="142.128" ry="18.3848"/>
|
|
58
|
+
<text text-anchor="middle" x="7268.04" y="-4806.51" font-family="Times Roman,serif" font-size="14.00">n4_length204_coverage45</text>
|
|
59
|
+
</g>
|
|
60
|
+
<!-- 45 -->
|
|
61
|
+
<g id="node45" class="node"><title>45</title>
|
|
62
|
+
<ellipse fill="none" stroke="black" cx="7554.02" cy="-4908.22" rx="142.128" ry="18.3848"/>
|
|
63
|
+
<text text-anchor="middle" x="7554.02" y="-4904.62" font-family="Times Roman,serif" font-size="14.00">n45_length45_coverage39</text>
|
|
64
|
+
</g>
|
|
65
|
+
<!-- 4->45 -->
|
|
66
|
+
<g id="edge14" class="edge"><title>4->45</title>
|
|
67
|
+
<path fill="none" stroke="blue" d="M7318.51,-4827.43C7367.47,-4844.22 7441.79,-4869.72 7493.81,-4887.56"/>
|
|
68
|
+
<polygon fill="blue" stroke="blue" points="7492.98,-4890.98 7503.58,-4890.91 7495.25,-4884.36 7492.98,-4890.98"/>
|
|
69
|
+
</g>
|
|
70
|
+
<!-- 46 -->
|
|
71
|
+
<g id="node46" class="node"><title>46</title>
|
|
72
|
+
<ellipse fill="none" stroke="black" cx="7198.57" cy="-4516.53" rx="142.128" ry="18.3848"/>
|
|
73
|
+
<text text-anchor="middle" x="7198.57" y="-4512.93" font-family="Times Roman,serif" font-size="14.00">n46_length43_coverage43</text>
|
|
74
|
+
</g>
|
|
75
|
+
<!-- 4->46 -->
|
|
76
|
+
<g id="edge12" class="edge"><title>4->46</title>
|
|
77
|
+
<path fill="none" stroke="black" d="M7263.59,-4791.3C7251.04,-4738.28 7215.49,-4588.02 7202.99,-4535.18"/>
|
|
78
|
+
</g>
|
|
79
|
+
<!-- 5 -->
|
|
80
|
+
<g id="node5" class="node"><title>5</title>
|
|
81
|
+
<ellipse fill="none" stroke="black" cx="2791.85" cy="-1129.35" rx="135.765" ry="18.3848"/>
|
|
82
|
+
<text text-anchor="middle" x="2791.85" y="-1125.75" font-family="Times Roman,serif" font-size="14.00">n5_length51_coverage25</text>
|
|
83
|
+
</g>
|
|
84
|
+
<!-- 6 -->
|
|
85
|
+
<g id="node6" class="node"><title>6</title>
|
|
86
|
+
<ellipse fill="none" stroke="black" cx="2490.06" cy="-1137.19" rx="128.901" ry="18.3848"/>
|
|
87
|
+
<text text-anchor="middle" x="2490.06" y="-1133.59" font-family="Times Roman,serif" font-size="14.00">n6_length6_coverage43</text>
|
|
88
|
+
</g>
|
|
89
|
+
<!-- 5->6 -->
|
|
90
|
+
<g id="edge16" class="edge"><title>5->6</title>
|
|
91
|
+
<path fill="none" stroke="black" d="M2658.16,-1132.83C2647.99,-1133.09 2637.72,-1133.36 2627.52,-1133.62"/>
|
|
92
|
+
<polygon fill="black" stroke="black" points="2627.27,-1130.13 2617.36,-1133.89 2627.45,-1137.13 2627.27,-1130.13"/>
|
|
93
|
+
</g>
|
|
94
|
+
<!-- 43 -->
|
|
95
|
+
<g id="node43" class="node"><title>43</title>
|
|
96
|
+
<ellipse fill="none" stroke="black" cx="2954.99" cy="-1383.47" rx="142.128" ry="18.3848"/>
|
|
97
|
+
<text text-anchor="middle" x="2954.99" y="-1379.87" font-family="Times Roman,serif" font-size="14.00">n43_length30_coverage45</text>
|
|
98
|
+
</g>
|
|
99
|
+
<!-- 5->43 -->
|
|
100
|
+
<g id="edge18" class="edge"><title>5->43</title>
|
|
101
|
+
<path fill="none" stroke="blue" d="M2803.85,-1148.04C2832.31,-1192.37 2904.02,-1304.07 2937.4,-1356.06"/>
|
|
102
|
+
<polygon fill="blue" stroke="blue" points="2934.63,-1358.23 2942.98,-1364.75 2940.52,-1354.45 2934.63,-1358.23"/>
|
|
103
|
+
</g>
|
|
104
|
+
<!-- 7 -->
|
|
105
|
+
<g id="node7" class="node"><title>7</title>
|
|
106
|
+
<ellipse fill="none" stroke="black" cx="2188.71" cy="-1152.09" rx="142.128" ry="18.3848"/>
|
|
107
|
+
<text text-anchor="middle" x="2188.71" y="-1148.49" font-family="Times Roman,serif" font-size="14.00">n7_length105_coverage27</text>
|
|
108
|
+
</g>
|
|
109
|
+
<!-- 6->7 -->
|
|
110
|
+
<g id="edge22" class="edge"><title>6->7</title>
|
|
111
|
+
<path fill="none" stroke="black" d="M2367.92,-1143.23C2356.07,-1143.82 2343.97,-1144.42 2331.93,-1145.01"/>
|
|
112
|
+
<polygon fill="black" stroke="black" points="2331.66,-1141.52 2321.85,-1145.51 2332.01,-1148.51 2331.66,-1141.52"/>
|
|
113
|
+
</g>
|
|
114
|
+
<!-- 72 -->
|
|
115
|
+
<g id="node72" class="node"><title>72</title>
|
|
116
|
+
<ellipse fill="none" stroke="black" cx="2321.81" cy="-886.917" rx="147.992" ry="18.3848"/>
|
|
117
|
+
<text text-anchor="middle" x="2321.81" y="-883.317" font-family="Times Roman,serif" font-size="14.00">n72_length105_coverage20</text>
|
|
118
|
+
</g>
|
|
119
|
+
<!-- 6->72 -->
|
|
120
|
+
<g id="edge20" class="edge"><title>6->72</title>
|
|
121
|
+
<path fill="none" stroke="black" d="M2477.41,-1118.38C2446.15,-1071.89 2365.54,-951.971 2334.37,-905.606"/>
|
|
122
|
+
</g>
|
|
123
|
+
<!-- 28 -->
|
|
124
|
+
<g id="node28" class="node"><title>28</title>
|
|
125
|
+
<ellipse fill="none" stroke="black" cx="2020.2" cy="-902.53" rx="142.128" ry="18.3848"/>
|
|
126
|
+
<text text-anchor="middle" x="2020.2" y="-898.93" font-family="Times Roman,serif" font-size="14.00">n28_length57_coverage53</text>
|
|
127
|
+
</g>
|
|
128
|
+
<!-- 7->28 -->
|
|
129
|
+
<g id="edge26" class="edge"><title>7->28</title>
|
|
130
|
+
<path fill="none" stroke="black" d="M2176.05,-1133.34C2144.74,-1086.97 2064,-967.399 2032.78,-921.165"/>
|
|
131
|
+
</g>
|
|
132
|
+
<!-- 8 -->
|
|
133
|
+
<g id="node8" class="node"><title>8</title>
|
|
134
|
+
<ellipse fill="none" stroke="black" cx="1846.76" cy="-656.432" rx="142.128" ry="18.3848"/>
|
|
135
|
+
<text text-anchor="middle" x="1846.76" y="-652.832" font-family="Times Roman,serif" font-size="14.00">n8_length288_coverage25</text>
|
|
136
|
+
</g>
|
|
137
|
+
<!-- 8->28 -->
|
|
138
|
+
<g id="edge28" class="edge"><title>8->28</title>
|
|
139
|
+
<path fill="none" stroke="black" d="M1859.79,-674.929C1890.12,-717.953 1965.49,-824.912 2001.05,-875.367"/>
|
|
140
|
+
<polygon fill="black" stroke="black" points="1998.39,-877.66 2007.01,-883.818 2004.11,-873.628 1998.39,-877.66"/>
|
|
141
|
+
</g>
|
|
142
|
+
<!-- 47 -->
|
|
143
|
+
<g id="node47" class="node"><title>47</title>
|
|
144
|
+
<ellipse fill="none" stroke="black" cx="1545.71" cy="-680.455" rx="142.128" ry="18.3848"/>
|
|
145
|
+
<text text-anchor="middle" x="1545.71" y="-676.855" font-family="Times Roman,serif" font-size="14.00">n47_length75_coverage44</text>
|
|
146
|
+
</g>
|
|
147
|
+
<!-- 8->47 -->
|
|
148
|
+
<g id="edge30" class="edge"><title>8->47</title>
|
|
149
|
+
<path fill="none" stroke="blue" d="M1725.61,-666.099C1709.65,-667.373 1693.22,-668.684 1677.09,-669.971"/>
|
|
150
|
+
<polygon fill="blue" stroke="blue" points="1676.79,-666.484 1667.1,-670.768 1677.35,-673.462 1676.79,-666.484"/>
|
|
151
|
+
</g>
|
|
152
|
+
<!-- 9 -->
|
|
153
|
+
<g id="node9" class="node"><title>9</title>
|
|
154
|
+
<ellipse fill="none" stroke="black" cx="8890.42" cy="-6870.79" rx="142.128" ry="18.3848"/>
|
|
155
|
+
<text text-anchor="middle" x="8890.42" y="-6867.19" font-family="Times Roman,serif" font-size="14.00">n9_length237_coverage30</text>
|
|
156
|
+
</g>
|
|
157
|
+
<!-- 40 -->
|
|
158
|
+
<g id="node40" class="node"><title>40</title>
|
|
159
|
+
<ellipse fill="none" stroke="black" cx="8859.4" cy="-6570.07" rx="147.992" ry="18.3848"/>
|
|
160
|
+
<text text-anchor="middle" x="8859.4" y="-6566.47" font-family="Times Roman,serif" font-size="14.00">n40_length118_coverage49</text>
|
|
161
|
+
</g>
|
|
162
|
+
<!-- 9->40 -->
|
|
163
|
+
<g id="edge32" class="edge"><title>9->40</title>
|
|
164
|
+
<path fill="none" stroke="black" d="M8888.48,-6851.98C8882.91,-6797.98 8866.91,-6642.87 8861.34,-6588.88"/>
|
|
165
|
+
</g>
|
|
166
|
+
<!-- 10 -->
|
|
167
|
+
<g id="node10" class="node"><title>10</title>
|
|
168
|
+
<ellipse fill="none" stroke="black" cx="5527.75" cy="-2787.33" rx="147.992" ry="18.3848"/>
|
|
169
|
+
<text text-anchor="middle" x="5527.75" y="-2783.73" font-family="Times Roman,serif" font-size="14.00">n10_length189_coverage25</text>
|
|
170
|
+
</g>
|
|
171
|
+
<!-- 10->2 -->
|
|
172
|
+
<g id="edge8" class="edge"><title>10->2</title>
|
|
173
|
+
<path fill="none" stroke="black" d="M5566.34,-2805.27C5615.49,-2828.12 5700.41,-2867.58 5753.53,-2892.27"/>
|
|
174
|
+
<polygon fill="black" stroke="black" points="5752.19,-2895.51 5762.74,-2896.55 5755.14,-2889.16 5752.19,-2895.51"/>
|
|
175
|
+
</g>
|
|
176
|
+
<!-- 48 -->
|
|
177
|
+
<g id="node48" class="node"><title>48</title>
|
|
178
|
+
<ellipse fill="none" stroke="black" cx="5325.93" cy="-2563.98" rx="147.992" ry="18.3848"/>
|
|
179
|
+
<text text-anchor="middle" x="5325.93" y="-2560.38" font-family="Times Roman,serif" font-size="14.00">n48_length135_coverage46</text>
|
|
180
|
+
</g>
|
|
181
|
+
<!-- 10->48 -->
|
|
182
|
+
<g id="edge36" class="edge"><title>10->48</title>
|
|
183
|
+
<path fill="none" stroke="blue" d="M5510.89,-2768.68C5474.96,-2728.92 5390.78,-2635.76 5349.54,-2590.12"/>
|
|
184
|
+
<polygon fill="blue" stroke="blue" points="5351.9,-2587.5 5342.6,-2582.43 5346.7,-2592.2 5351.9,-2587.5"/>
|
|
185
|
+
</g>
|
|
186
|
+
<!-- 11 -->
|
|
187
|
+
<g id="node11" class="node"><title>11</title>
|
|
188
|
+
<ellipse fill="none" stroke="black" cx="8177.95" cy="-5423.64" rx="142.128" ry="18.3848"/>
|
|
189
|
+
<text text-anchor="middle" x="8177.95" y="-5420.04" font-family="Times Roman,serif" font-size="14.00">n11_length96_coverage21</text>
|
|
190
|
+
</g>
|
|
191
|
+
<!-- 49 -->
|
|
192
|
+
<g id="node49" class="node"><title>49</title>
|
|
193
|
+
<ellipse fill="none" stroke="black" cx="7897.96" cy="-5309.89" rx="142.128" ry="18.3848"/>
|
|
194
|
+
<text text-anchor="middle" x="7897.96" y="-5306.29" font-family="Times Roman,serif" font-size="14.00">n49_length18_coverage59</text>
|
|
195
|
+
</g>
|
|
196
|
+
<!-- 11->49 -->
|
|
197
|
+
<g id="edge38" class="edge"><title>11->49</title>
|
|
198
|
+
<path fill="none" stroke="black" d="M8134.51,-5405.99C8085.05,-5385.9 8004.26,-5353.07 7951.09,-5331.47"/>
|
|
199
|
+
<polygon fill="black" stroke="black" points="7952.09,-5328.1 7941.5,-5327.58 7949.45,-5334.58 7952.09,-5328.1"/>
|
|
200
|
+
</g>
|
|
201
|
+
<!-- 12 -->
|
|
202
|
+
<g id="node12" class="node"><title>12</title>
|
|
203
|
+
<ellipse fill="none" stroke="black" cx="143" cy="-86.4827" rx="142.128" ry="18.3848"/>
|
|
204
|
+
<text text-anchor="middle" x="143" y="-82.8827" font-family="Times Roman,serif" font-size="14.00">n12_length84_coverage15</text>
|
|
205
|
+
</g>
|
|
206
|
+
<!-- 36 -->
|
|
207
|
+
<g id="node36" class="node"><title>36</title>
|
|
208
|
+
<ellipse fill="none" stroke="black" cx="296.57" cy="-334.53" rx="142.128" ry="18.3848"/>
|
|
209
|
+
<text text-anchor="middle" x="296.57" y="-330.93" font-family="Times Roman,serif" font-size="14.00">n36_length99_coverage27</text>
|
|
210
|
+
</g>
|
|
211
|
+
<!-- 12->36 -->
|
|
212
|
+
<g id="edge42" class="edge"><title>12->36</title>
|
|
213
|
+
<path fill="none" stroke="black" d="M154.543,-105.127C181.401,-148.508 248.185,-256.378 279.655,-307.209"/>
|
|
214
|
+
<polygon fill="black" stroke="black" points="276.863,-309.348 285.103,-316.008 282.814,-305.663 276.863,-309.348"/>
|
|
215
|
+
</g>
|
|
216
|
+
<!-- 79 -->
|
|
217
|
+
<g id="node79" class="node"><title>79</title>
|
|
218
|
+
<ellipse fill="none" stroke="black" cx="428.365" cy="-19.5" rx="142.128" ry="18.3848"/>
|
|
219
|
+
<text text-anchor="middle" x="428.365" y="-15.9" font-family="Times Roman,serif" font-size="14.00">n79_length99_coverage24</text>
|
|
220
|
+
</g>
|
|
221
|
+
<!-- 12->79 -->
|
|
222
|
+
<g id="edge44" class="edge"><title>12->79</title>
|
|
223
|
+
<path fill="none" stroke="black" d="M212.079,-70.268C253.55,-60.5337 306.445,-48.1178 349.545,-38.0012"/>
|
|
224
|
+
<polygon fill="black" stroke="black" points="350.493,-41.3739 359.428,-35.6813 348.893,-34.5591 350.493,-41.3739"/>
|
|
225
|
+
</g>
|
|
226
|
+
<!-- 13 -->
|
|
227
|
+
<g id="node13" class="node"><title>13</title>
|
|
228
|
+
<ellipse fill="none" stroke="black" cx="7837.48" cy="-5013.72" rx="142.128" ry="18.3848"/>
|
|
229
|
+
<text text-anchor="middle" x="7837.48" y="-5010.12" font-family="Times Roman,serif" font-size="14.00">n13_length51_coverage26</text>
|
|
230
|
+
</g>
|
|
231
|
+
<!-- 13->45 -->
|
|
232
|
+
<g id="edge46" class="edge"><title>13->45</title>
|
|
233
|
+
<path fill="none" stroke="black" d="M7790.35,-4996.18C7737.93,-4976.67 7653.73,-4945.33 7601.26,-4925.8"/>
|
|
234
|
+
</g>
|
|
235
|
+
<!-- 14 -->
|
|
236
|
+
<g id="node14" class="node"><title>14</title>
|
|
237
|
+
<ellipse fill="none" stroke="black" cx="6390.42" cy="-3462.33" rx="147.992" ry="18.3848"/>
|
|
238
|
+
<text text-anchor="middle" x="6390.42" y="-3458.73" font-family="Times Roman,serif" font-size="14.00">n14_length148_coverage23</text>
|
|
239
|
+
</g>
|
|
240
|
+
<!-- 51 -->
|
|
241
|
+
<g id="node51" class="node"><title>51</title>
|
|
242
|
+
<ellipse fill="none" stroke="black" cx="6465.11" cy="-3753.82" rx="142.128" ry="18.3848"/>
|
|
243
|
+
<text text-anchor="middle" x="6465.11" y="-3750.22" font-family="Times Roman,serif" font-size="14.00">n51_length24_coverage45</text>
|
|
244
|
+
</g>
|
|
245
|
+
<!-- 14->51 -->
|
|
246
|
+
<g id="edge50" class="edge"><title>14->51</title>
|
|
247
|
+
<path fill="none" stroke="black" d="M6395.21,-3481.01C6408.7,-3533.66 6446.92,-3682.84 6460.37,-3735.3"/>
|
|
248
|
+
</g>
|
|
249
|
+
<!-- 14->99 -->
|
|
250
|
+
<g id="edge52" class="edge"><title>14->99</title>
|
|
251
|
+
<path fill="none" stroke="blue" d="M6338.2,-3444.93C6289.53,-3428.71 6216.91,-3404.51 6165.44,-3387.36"/>
|
|
252
|
+
<polygon fill="blue" stroke="blue" points="6166.36,-3383.97 6155.76,-3384.13 6164.14,-3390.62 6166.36,-3383.97"/>
|
|
253
|
+
</g>
|
|
254
|
+
<!-- 15 -->
|
|
255
|
+
<g id="node15" class="node"><title>15</title>
|
|
256
|
+
<ellipse fill="none" stroke="black" cx="3717.59" cy="-1640.31" rx="147.992" ry="18.3848"/>
|
|
257
|
+
<text text-anchor="middle" x="3717.59" y="-1636.71" font-family="Times Roman,serif" font-size="14.00">n15_length267_coverage25</text>
|
|
258
|
+
</g>
|
|
259
|
+
<!-- 16 -->
|
|
260
|
+
<g id="node16" class="node"><title>16</title>
|
|
261
|
+
<ellipse fill="none" stroke="black" cx="3415.97" cy="-1638.6" rx="142.128" ry="18.3848"/>
|
|
262
|
+
<text text-anchor="middle" x="3415.97" y="-1635" font-family="Times Roman,serif" font-size="14.00">n16_length23_coverage44</text>
|
|
263
|
+
</g>
|
|
264
|
+
<!-- 15->16 -->
|
|
265
|
+
<g id="edge54" class="edge"><title>15->16</title>
|
|
266
|
+
<path fill="none" stroke="black" d="M3569.43,-1639.47C3569.08,-1639.47 3568.73,-1639.46 3568.38,-1639.46"/>
|
|
267
|
+
<polygon fill="black" stroke="black" points="3568.28,-1635.96 3558.26,-1639.4 3568.24,-1642.96 3568.28,-1635.96"/>
|
|
268
|
+
</g>
|
|
269
|
+
<!-- 55 -->
|
|
270
|
+
<g id="node55" class="node"><title>55</title>
|
|
271
|
+
<ellipse fill="none" stroke="black" cx="3874.99" cy="-1898.62" rx="142.128" ry="18.3848"/>
|
|
272
|
+
<text text-anchor="middle" x="3874.99" y="-1895.02" font-family="Times Roman,serif" font-size="14.00">n55_length69_coverage45</text>
|
|
273
|
+
</g>
|
|
274
|
+
<!-- 15->55 -->
|
|
275
|
+
<g id="edge56" class="edge"><title>15->55</title>
|
|
276
|
+
<path fill="none" stroke="blue" d="M3728.91,-1658.89C3756.24,-1703.74 3825.94,-1818.14 3858.18,-1871.03"/>
|
|
277
|
+
<polygon fill="blue" stroke="blue" points="3855.37,-1873.15 3863.56,-1879.87 3861.34,-1869.51 3855.37,-1873.15"/>
|
|
278
|
+
</g>
|
|
279
|
+
<!-- 17 -->
|
|
280
|
+
<g id="node17" class="node"><title>17</title>
|
|
281
|
+
<ellipse fill="none" stroke="black" cx="3256.74" cy="-1381.66" rx="142.128" ry="18.3848"/>
|
|
282
|
+
<text text-anchor="middle" x="3256.74" y="-1378.06" font-family="Times Roman,serif" font-size="14.00">n17_length91_coverage22</text>
|
|
283
|
+
</g>
|
|
284
|
+
<!-- 16->17 -->
|
|
285
|
+
<g id="edge60" class="edge"><title>16->17</title>
|
|
286
|
+
<path fill="none" stroke="black" d="M3404.52,-1620.12C3376.87,-1575.51 3306.36,-1461.72 3273.75,-1409.11"/>
|
|
287
|
+
<polygon fill="black" stroke="black" points="3276.55,-1406.97 3268.31,-1400.32 3270.6,-1410.66 3276.55,-1406.97"/>
|
|
288
|
+
</g>
|
|
289
|
+
<!-- 62 -->
|
|
290
|
+
<g id="node62" class="node"><title>62</title>
|
|
291
|
+
<ellipse fill="none" stroke="black" cx="3114.41" cy="-1639.95" rx="142.128" ry="18.3848"/>
|
|
292
|
+
<text text-anchor="middle" x="3114.41" y="-1636.35" font-family="Times Roman,serif" font-size="14.00">n62_length91_coverage26</text>
|
|
293
|
+
</g>
|
|
294
|
+
<!-- 16->62 -->
|
|
295
|
+
<g id="edge58" class="edge"><title>16->62</title>
|
|
296
|
+
<path fill="none" stroke="black" d="M3274.02,-1639.23C3268.22,-1639.26 3262.39,-1639.28 3256.59,-1639.31"/>
|
|
297
|
+
</g>
|
|
298
|
+
<!-- 17->43 -->
|
|
299
|
+
<g id="edge64" class="edge"><title>17->43</title>
|
|
300
|
+
<path fill="none" stroke="black" d="M3114.7,-1382.51C3108.9,-1382.55 3103.07,-1382.58 3097.26,-1382.62"/>
|
|
301
|
+
</g>
|
|
302
|
+
<!-- 18 -->
|
|
303
|
+
<g id="node18" class="node"><title>18</title>
|
|
304
|
+
<ellipse fill="none" stroke="black" cx="8273.32" cy="-6020.76" rx="142.128" ry="18.3848"/>
|
|
305
|
+
<text text-anchor="middle" x="8273.32" y="-6017.16" font-family="Times Roman,serif" font-size="14.00">n18_length96_coverage24</text>
|
|
306
|
+
</g>
|
|
307
|
+
<!-- 53 -->
|
|
308
|
+
<g id="node53" class="node"><title>53</title>
|
|
309
|
+
<ellipse fill="none" stroke="black" cx="8229.55" cy="-5721.65" rx="142.128" ry="18.3848"/>
|
|
310
|
+
<text text-anchor="middle" x="8229.55" y="-5718.05" font-family="Times Roman,serif" font-size="14.00">n53_length21_coverage47</text>
|
|
311
|
+
</g>
|
|
312
|
+
<!-- 18->53 -->
|
|
313
|
+
<g id="edge68" class="edge"><title>18->53</title>
|
|
314
|
+
<path fill="none" stroke="blue" d="M8270.58,-6002.05C8263.17,-5951.37 8242.65,-5811.21 8233.76,-5750.41"/>
|
|
315
|
+
<polygon fill="blue" stroke="blue" points="8237.19,-5749.74 8232.28,-5740.35 8230.27,-5750.76 8237.19,-5749.74"/>
|
|
316
|
+
</g>
|
|
317
|
+
<!-- 98 -->
|
|
318
|
+
<g id="node98" class="node"><title>98</title>
|
|
319
|
+
<ellipse fill="none" stroke="black" cx="8549.42" cy="-6142.34" rx="135.765" ry="18.3848"/>
|
|
320
|
+
<text text-anchor="middle" x="8549.42" y="-6138.74" font-family="Times Roman,serif" font-size="14.00">n98_length9_coverage52</text>
|
|
321
|
+
</g>
|
|
322
|
+
<!-- 18->98 -->
|
|
323
|
+
<g id="edge66" class="edge"><title>18->98</title>
|
|
324
|
+
<path fill="none" stroke="black" d="M8313.76,-6038.57C8366.04,-6061.59 8456.54,-6101.44 8508.87,-6124.48"/>
|
|
325
|
+
</g>
|
|
326
|
+
<!-- 19 -->
|
|
327
|
+
<g id="node19" class="node"><title>19</title>
|
|
328
|
+
<ellipse fill="none" stroke="black" cx="9188.32" cy="-7303.87" rx="142.128" ry="18.3848"/>
|
|
329
|
+
<text text-anchor="middle" x="9188.32" y="-7300.27" font-family="Times Roman,serif" font-size="14.00">n19_length51_coverage21</text>
|
|
330
|
+
</g>
|
|
331
|
+
<!-- 41 -->
|
|
332
|
+
<g id="node41" class="node"><title>41</title>
|
|
333
|
+
<ellipse fill="none" stroke="black" cx="9161.74" cy="-7002.93" rx="142.128" ry="18.3848"/>
|
|
334
|
+
<text text-anchor="middle" x="9161.74" y="-6999.33" font-family="Times Roman,serif" font-size="14.00">n41_length60_coverage53</text>
|
|
335
|
+
</g>
|
|
336
|
+
<!-- 19->41 -->
|
|
337
|
+
<g id="edge72" class="edge"><title>19->41</title>
|
|
338
|
+
<path fill="none" stroke="blue" d="M9186.66,-7285.04C9182.16,-7234.06 9169.7,-7093.04 9164.29,-7031.87"/>
|
|
339
|
+
<polygon fill="blue" stroke="blue" points="9167.77,-7031.4 9163.4,-7021.75 9160.79,-7032.02 9167.77,-7031.4"/>
|
|
340
|
+
</g>
|
|
341
|
+
<!-- 90 -->
|
|
342
|
+
<g id="node90" class="node"><title>90</title>
|
|
343
|
+
<ellipse fill="none" stroke="black" cx="9458.03" cy="-7439.64" rx="135.765" ry="18.3848"/>
|
|
344
|
+
<text text-anchor="middle" x="9458.03" y="-7436.04" font-family="Times Roman,serif" font-size="14.00">n90_length1_coverage54</text>
|
|
345
|
+
</g>
|
|
346
|
+
<!-- 19->90 -->
|
|
347
|
+
<g id="edge70" class="edge"><title>19->90</title>
|
|
348
|
+
<path fill="none" stroke="black" d="M9224.14,-7321.9C9275.87,-7347.94 9370.93,-7395.79 9422.5,-7421.75"/>
|
|
349
|
+
</g>
|
|
350
|
+
<!-- 20 -->
|
|
351
|
+
<g id="node20" class="node"><title>20</title>
|
|
352
|
+
<ellipse fill="none" stroke="black" cx="7485.14" cy="-4614.12" rx="147.992" ry="18.3848"/>
|
|
353
|
+
<text text-anchor="middle" x="7485.14" y="-4610.52" font-family="Times Roman,serif" font-size="14.00">n20_length204_coverage25</text>
|
|
354
|
+
</g>
|
|
355
|
+
<!-- 20->45 -->
|
|
356
|
+
<g id="edge76" class="edge"><title>20->45</title>
|
|
357
|
+
<path fill="none" stroke="blue" d="M7489.55,-4632.96C7501.29,-4683.07 7533.33,-4819.86 7547.33,-4879.63"/>
|
|
358
|
+
<polygon fill="blue" stroke="blue" points="7543.96,-4880.59 7549.65,-4889.53 7550.77,-4878.99 7543.96,-4880.59"/>
|
|
359
|
+
</g>
|
|
360
|
+
<!-- 20->46 -->
|
|
361
|
+
<g id="edge74" class="edge"><title>20->46</title>
|
|
362
|
+
<path fill="none" stroke="black" d="M7433.91,-4596.67C7381.75,-4578.91 7301.36,-4551.53 7249.36,-4533.82"/>
|
|
363
|
+
</g>
|
|
364
|
+
<!-- 21 -->
|
|
365
|
+
<g id="node21" class="node"><title>21</title>
|
|
366
|
+
<ellipse fill="none" stroke="black" cx="10978.9" cy="-10202" rx="135.765" ry="18.3848"/>
|
|
367
|
+
<text text-anchor="middle" x="10978.9" y="-10198.4" font-family="Times Roman,serif" font-size="14.00">n21_length4_coverage60</text>
|
|
368
|
+
</g>
|
|
369
|
+
<!-- 22 -->
|
|
370
|
+
<g id="node22" class="node"><title>22</title>
|
|
371
|
+
<ellipse fill="none" stroke="black" cx="10928.9" cy="-10500.1" rx="142.128" ry="18.3848"/>
|
|
372
|
+
<text text-anchor="middle" x="10928.9" y="-10496.5" font-family="Times Roman,serif" font-size="14.00">n22_length51_coverage31</text>
|
|
373
|
+
</g>
|
|
374
|
+
<!-- 21->22 -->
|
|
375
|
+
<g id="edge78" class="edge"><title>21->22</title>
|
|
376
|
+
<path fill="none" stroke="black" d="M10975.7,-10220.7C10967.3,-10271.2 10943.9,-10410.8 10933.7,-10471.4"/>
|
|
377
|
+
<polygon fill="black" stroke="black" points="10930.2,-10471 10932,-10481.5 10937.1,-10472.2 10930.2,-10471"/>
|
|
378
|
+
</g>
|
|
379
|
+
<!-- 35 -->
|
|
380
|
+
<g id="node35" class="node"><title>35</title>
|
|
381
|
+
<ellipse fill="none" stroke="black" cx="11014" cy="-9901.59" rx="147.992" ry="18.3848"/>
|
|
382
|
+
<text text-anchor="middle" x="11014" y="-9897.99" font-family="Times Roman,serif" font-size="14.00">n35_length101_coverage23</text>
|
|
383
|
+
</g>
|
|
384
|
+
<!-- 21->35 -->
|
|
385
|
+
<g id="edge82" class="edge"><title>21->35</title>
|
|
386
|
+
<path fill="none" stroke="blue" d="M10981.1,-10183.2C10987,-10132.3 11003.5,-9991.54 11010.6,-9930.47"/>
|
|
387
|
+
<polygon fill="blue" stroke="blue" points="11014.1,-9930.71 11011.8,-9920.37 11007.2,-9929.9 11014.1,-9930.71"/>
|
|
388
|
+
</g>
|
|
389
|
+
<!-- 77 -->
|
|
390
|
+
<g id="node77" class="node"><title>77</title>
|
|
391
|
+
<ellipse fill="none" stroke="black" cx="10741.7" cy="-10018.1" rx="147.992" ry="18.3848"/>
|
|
392
|
+
<text text-anchor="middle" x="10741.7" y="-10014.5" font-family="Times Roman,serif" font-size="14.00">n77_length101_coverage23</text>
|
|
393
|
+
</g>
|
|
394
|
+
<!-- 21->77 -->
|
|
395
|
+
<g id="edge84" class="edge"><title>21->77</title>
|
|
396
|
+
<path fill="none" stroke="blue" d="M10955.3,-10183.7C10912.4,-10150.5 10821.7,-10080.2 10773.5,-10042.8"/>
|
|
397
|
+
<polygon fill="blue" stroke="blue" points="10775.6,-10040 10765.5,-10036.6 10771.3,-10045.5 10775.6,-10040"/>
|
|
398
|
+
</g>
|
|
399
|
+
<!-- 92 -->
|
|
400
|
+
<g id="node92" class="node"><title>92</title>
|
|
401
|
+
<ellipse fill="none" stroke="black" cx="11208.5" cy="-10395.1" rx="142.128" ry="18.3848"/>
|
|
402
|
+
<text text-anchor="middle" x="11208.5" y="-10391.5" font-family="Times Roman,serif" font-size="14.00">n92_length51_coverage26</text>
|
|
403
|
+
</g>
|
|
404
|
+
<!-- 21->92 -->
|
|
405
|
+
<g id="edge80" class="edge"><title>21->92</title>
|
|
406
|
+
<path fill="none" stroke="black" d="M11000.9,-10220.5C11042.4,-10255.4 11132.1,-10330.9 11178.9,-10370.2"/>
|
|
407
|
+
<polygon fill="black" stroke="black" points="11176.6,-10372.9 11186.5,-10376.6 11181.1,-10367.5 11176.6,-10372.9"/>
|
|
408
|
+
</g>
|
|
409
|
+
<!-- 56 -->
|
|
410
|
+
<g id="node56" class="node"><title>56</title>
|
|
411
|
+
<ellipse fill="none" stroke="black" cx="11157.6" cy="-10693.2" rx="142.128" ry="18.3848"/>
|
|
412
|
+
<text text-anchor="middle" x="11157.6" y="-10689.6" font-family="Times Roman,serif" font-size="14.00">n56_length45_coverage44</text>
|
|
413
|
+
</g>
|
|
414
|
+
<!-- 22->56 -->
|
|
415
|
+
<g id="edge86" class="edge"><title>22->56</title>
|
|
416
|
+
<path fill="none" stroke="black" d="M10950.8,-10518.6C10992.1,-10553.4 11081.2,-10628.7 11127.8,-10668.1"/>
|
|
417
|
+
<polygon fill="black" stroke="black" points="11125.8,-10671 11135.7,-10674.8 11130.3,-10665.6 11125.8,-10671"/>
|
|
418
|
+
</g>
|
|
419
|
+
<!-- 23 -->
|
|
420
|
+
<g id="node23" class="node"><title>23</title>
|
|
421
|
+
<ellipse fill="none" stroke="black" cx="11226.5" cy="-11475" rx="147.992" ry="18.3848"/>
|
|
422
|
+
<text text-anchor="middle" x="11226.5" y="-11471.4" font-family="Times Roman,serif" font-size="14.00">n23_length174_coverage25</text>
|
|
423
|
+
</g>
|
|
424
|
+
<!-- 59 -->
|
|
425
|
+
<g id="node59" class="node"><title>59</title>
|
|
426
|
+
<ellipse fill="none" stroke="black" cx="11316.4" cy="-11187.1" rx="142.128" ry="18.3848"/>
|
|
427
|
+
<text text-anchor="middle" x="11316.4" y="-11183.5" font-family="Times Roman,serif" font-size="14.00">n59_length54_coverage46</text>
|
|
428
|
+
</g>
|
|
429
|
+
<!-- 23->59 -->
|
|
430
|
+
<g id="edge88" class="edge"><title>23->59</title>
|
|
431
|
+
<path fill="none" stroke="black" d="M11232.4,-11456.1C11248.7,-11403.8 11294.4,-11257.6 11310.6,-11205.7"/>
|
|
432
|
+
</g>
|
|
433
|
+
<!-- 24 -->
|
|
434
|
+
<g id="node24" class="node"><title>24</title>
|
|
435
|
+
<ellipse fill="none" stroke="black" cx="10293.2" cy="-9081.87" rx="147.992" ry="18.3848"/>
|
|
436
|
+
<text text-anchor="middle" x="10293.2" y="-9078.27" font-family="Times Roman,serif" font-size="14.00">n24_length126_coverage31</text>
|
|
437
|
+
</g>
|
|
438
|
+
<!-- 70 -->
|
|
439
|
+
<g id="node70" class="node"><title>70</title>
|
|
440
|
+
<ellipse fill="none" stroke="black" cx="10547.4" cy="-9243.88" rx="142.128" ry="18.3848"/>
|
|
441
|
+
<text text-anchor="middle" x="10547.4" y="-9240.28" font-family="Times Roman,serif" font-size="14.00">n70_length18_coverage45</text>
|
|
442
|
+
</g>
|
|
443
|
+
<!-- 24->70 -->
|
|
444
|
+
<g id="edge92" class="edge"><title>24->70</title>
|
|
445
|
+
<path fill="none" stroke="black" d="M10321.9,-9100.14C10370.8,-9131.34 10470,-9194.52 10518.8,-9225.68"/>
|
|
446
|
+
</g>
|
|
447
|
+
<!-- 25 -->
|
|
448
|
+
<g id="node25" class="node"><title>25</title>
|
|
449
|
+
<ellipse fill="none" stroke="black" cx="1245.77" cy="-712.399" rx="142.128" ry="18.3848"/>
|
|
450
|
+
<text text-anchor="middle" x="1245.77" y="-708.799" font-family="Times Roman,serif" font-size="14.00">n25_length75_coverage27</text>
|
|
451
|
+
</g>
|
|
452
|
+
<!-- 25->47 -->
|
|
453
|
+
<g id="edge96" class="edge"><title>25->47</title>
|
|
454
|
+
<path fill="none" stroke="black" d="M1355.75,-700.686C1381.84,-697.908 1409.66,-694.945 1435.74,-692.167"/>
|
|
455
|
+
</g>
|
|
456
|
+
<!-- 97 -->
|
|
457
|
+
<g id="node97" class="node"><title>97</title>
|
|
458
|
+
<ellipse fill="none" stroke="black" cx="1068.25" cy="-470.554" rx="135.765" ry="18.3848"/>
|
|
459
|
+
<text text-anchor="middle" x="1068.25" y="-466.954" font-family="Times Roman,serif" font-size="14.00">n97_length6_coverage65</text>
|
|
460
|
+
</g>
|
|
461
|
+
<!-- 25->97 -->
|
|
462
|
+
<g id="edge98" class="edge"><title>25->97</title>
|
|
463
|
+
<path fill="none" stroke="blue" d="M1232.13,-693.824C1200.96,-651.356 1124.38,-547.026 1088.03,-497.496"/>
|
|
464
|
+
<polygon fill="blue" stroke="blue" points="1090.67,-495.183 1081.93,-489.193 1085.03,-499.325 1090.67,-495.183"/>
|
|
465
|
+
</g>
|
|
466
|
+
<!-- 26 -->
|
|
467
|
+
<g id="node26" class="node"><title>26</title>
|
|
468
|
+
<ellipse fill="none" stroke="black" cx="11093.8" cy="-10988.2" rx="142.128" ry="18.3848"/>
|
|
469
|
+
<text text-anchor="middle" x="11093.8" y="-10984.6" font-family="Times Roman,serif" font-size="14.00">n26_length51_coverage26</text>
|
|
470
|
+
</g>
|
|
471
|
+
<!-- 26->56 -->
|
|
472
|
+
<g id="edge100" class="edge"><title>26->56</title>
|
|
473
|
+
<path fill="none" stroke="black" d="M11097.9,-10969.3C11109.4,-10916 11142,-10765 11153.5,-10712"/>
|
|
474
|
+
</g>
|
|
475
|
+
<!-- 26->59 -->
|
|
476
|
+
<g id="edge102" class="edge"><title>26->59</title>
|
|
477
|
+
<path fill="none" stroke="blue" d="M11114.4,-11006.5C11154.4,-11042.3 11242.8,-11121.3 11288.2,-11161.9"/>
|
|
478
|
+
<polygon fill="blue" stroke="blue" points="11286.1,-11164.7 11295.9,-11168.8 11290.8,-11159.5 11286.1,-11164.7"/>
|
|
479
|
+
</g>
|
|
480
|
+
<!-- 63 -->
|
|
481
|
+
<g id="node63" class="node"><title>63</title>
|
|
482
|
+
<ellipse fill="none" stroke="black" cx="1719.34" cy="-925.927" rx="147.992" ry="18.3848"/>
|
|
483
|
+
<text text-anchor="middle" x="1719.34" y="-922.327" font-family="Times Roman,serif" font-size="14.00">n63_length288_coverage27</text>
|
|
484
|
+
</g>
|
|
485
|
+
<!-- 28->63 -->
|
|
486
|
+
<g id="edge108" class="edge"><title>28->63</title>
|
|
487
|
+
<path fill="none" stroke="blue" d="M1898.26,-912.013C1884.23,-913.103 1869.87,-914.221 1855.67,-915.325"/>
|
|
488
|
+
<polygon fill="blue" stroke="blue" points="1855.06,-911.861 1845.37,-916.126 1855.61,-918.84 1855.06,-911.861"/>
|
|
489
|
+
</g>
|
|
490
|
+
<!-- 28->72 -->
|
|
491
|
+
<g id="edge106" class="edge"><title>28->72</title>
|
|
492
|
+
<path fill="none" stroke="black" d="M2152.49,-895.682C2159.89,-895.299 2167.35,-894.913 2174.79,-894.527"/>
|
|
493
|
+
<polygon fill="black" stroke="black" points="2175.13,-898.015 2184.94,-894.002 2174.77,-891.024 2175.13,-898.015"/>
|
|
494
|
+
</g>
|
|
495
|
+
<!-- 29 -->
|
|
496
|
+
<g id="node29" class="node"><title>29</title>
|
|
497
|
+
<ellipse fill="none" stroke="black" cx="10036.7" cy="-8627.87" rx="142.128" ry="18.3848"/>
|
|
498
|
+
<text text-anchor="middle" x="10036.7" y="-8624.27" font-family="Times Roman,serif" font-size="14.00">n29_length54_coverage25</text>
|
|
499
|
+
</g>
|
|
500
|
+
<!-- 52 -->
|
|
501
|
+
<g id="node52" class="node"><title>52</title>
|
|
502
|
+
<ellipse fill="none" stroke="black" cx="10297.2" cy="-8780.28" rx="142.128" ry="18.3848"/>
|
|
503
|
+
<text text-anchor="middle" x="10297.2" y="-8776.68" font-family="Times Roman,serif" font-size="14.00">n52_length36_coverage51</text>
|
|
504
|
+
</g>
|
|
505
|
+
<!-- 29->52 -->
|
|
506
|
+
<g id="edge112" class="edge"><title>29->52</title>
|
|
507
|
+
<path fill="none" stroke="blue" d="M10067.6,-8645.95C10115,-8673.68 10205.6,-8726.69 10257.7,-8757.17"/>
|
|
508
|
+
<polygon fill="blue" stroke="blue" points="10256,-8760.19 10266.4,-8762.22 10259.5,-8754.15 10256,-8760.19"/>
|
|
509
|
+
</g>
|
|
510
|
+
<!-- 60 -->
|
|
511
|
+
<g id="node60" class="node"><title>60</title>
|
|
512
|
+
<ellipse fill="none" stroke="black" cx="10029.2" cy="-8326.41" rx="142.128" ry="18.3848"/>
|
|
513
|
+
<text text-anchor="middle" x="10029.2" y="-8322.81" font-family="Times Roman,serif" font-size="14.00">n60_length18_coverage55</text>
|
|
514
|
+
</g>
|
|
515
|
+
<!-- 29->60 -->
|
|
516
|
+
<g id="edge110" class="edge"><title>29->60</title>
|
|
517
|
+
<path fill="none" stroke="black" d="M10036.2,-8609.01C10035,-8557.94 10031.4,-8416.68 10029.9,-8355.39"/>
|
|
518
|
+
<polygon fill="black" stroke="black" points="10033.4,-8355.17 10029.7,-8345.26 10026.4,-8355.34 10033.4,-8355.17"/>
|
|
519
|
+
</g>
|
|
520
|
+
<!-- 30 -->
|
|
521
|
+
<g id="node30" class="node"><title>30</title>
|
|
522
|
+
<ellipse fill="none" stroke="black" cx="8823.08" cy="-6269.77" rx="142.128" ry="18.3848"/>
|
|
523
|
+
<text text-anchor="middle" x="8823.08" y="-6266.17" font-family="Times Roman,serif" font-size="14.00">n30_length51_coverage27</text>
|
|
524
|
+
</g>
|
|
525
|
+
<!-- 30->40 -->
|
|
526
|
+
<g id="edge114" class="edge"><title>30->40</title>
|
|
527
|
+
<path fill="none" stroke="black" d="M8825.35,-6288.55C8831.51,-6339.43 8848.53,-6480.15 8855.91,-6541.2"/>
|
|
528
|
+
<polygon fill="black" stroke="black" points="8852.45,-6541.79 8857.13,-6551.3 8859.4,-6540.95 8852.45,-6541.79"/>
|
|
529
|
+
</g>
|
|
530
|
+
<!-- 30->98 -->
|
|
531
|
+
<g id="edge116" class="edge"><title>30->98</title>
|
|
532
|
+
<path fill="none" stroke="blue" d="M8784.74,-6251.91C8735.62,-6229.04 8650.47,-6189.39 8597.18,-6164.58"/>
|
|
533
|
+
<polygon fill="blue" stroke="blue" points="8598.49,-6161.33 8587.94,-6160.28 8595.53,-6167.67 8598.49,-6161.33"/>
|
|
534
|
+
</g>
|
|
535
|
+
<!-- 31 -->
|
|
536
|
+
<g id="node31" class="node"><title>31</title>
|
|
537
|
+
<ellipse fill="none" stroke="black" cx="4034.12" cy="-2156" rx="142.128" ry="18.3848"/>
|
|
538
|
+
<text text-anchor="middle" x="4034.12" y="-2152.4" font-family="Times Roman,serif" font-size="14.00">n31_length78_coverage30</text>
|
|
539
|
+
</g>
|
|
540
|
+
<!-- 85 -->
|
|
541
|
+
<g id="node85" class="node"><title>85</title>
|
|
542
|
+
<ellipse fill="none" stroke="black" cx="4335.63" cy="-2157.57" rx="142.128" ry="18.3848"/>
|
|
543
|
+
<text text-anchor="middle" x="4335.63" y="-2153.97" font-family="Times Roman,serif" font-size="14.00">n85_length36_coverage56</text>
|
|
544
|
+
</g>
|
|
545
|
+
<!-- 31->85 -->
|
|
546
|
+
<g id="edge118" class="edge"><title>31->85</title>
|
|
547
|
+
<path fill="none" stroke="black" d="M4176.04,-2156.74C4178.49,-2156.75 4180.94,-2156.76 4183.4,-2156.78"/>
|
|
548
|
+
<polygon fill="black" stroke="black" points="4183.46,-2160.28 4193.47,-2156.83 4183.49,-2153.28 4183.46,-2160.28"/>
|
|
549
|
+
</g>
|
|
550
|
+
<!-- 32 -->
|
|
551
|
+
<g id="node32" class="node"><title>32</title>
|
|
552
|
+
<ellipse fill="none" stroke="black" cx="10013.4" cy="-8024.97" rx="147.992" ry="18.3848"/>
|
|
553
|
+
<text text-anchor="middle" x="10013.4" y="-8021.37" font-family="Times Roman,serif" font-size="14.00">n32_length102_coverage28</text>
|
|
554
|
+
</g>
|
|
555
|
+
<!-- 95 -->
|
|
556
|
+
<g id="node95" class="node"><title>95</title>
|
|
557
|
+
<ellipse fill="none" stroke="black" cx="9748.04" cy="-7880.29" rx="135.765" ry="18.3848"/>
|
|
558
|
+
<text text-anchor="middle" x="9748.04" y="-7876.69" font-family="Times Roman,serif" font-size="14.00">n95_length2_coverage47</text>
|
|
559
|
+
</g>
|
|
560
|
+
<!-- 32->95 -->
|
|
561
|
+
<g id="edge122" class="edge"><title>32->95</title>
|
|
562
|
+
<path fill="none" stroke="black" d="M9980.09,-8006.79C9931.89,-7980.52 9842.77,-7931.94 9790.11,-7903.23"/>
|
|
563
|
+
<polygon fill="black" stroke="black" points="9791.49,-7900 9781.03,-7898.28 9788.14,-7906.14 9791.49,-7900"/>
|
|
564
|
+
</g>
|
|
565
|
+
<!-- 33 -->
|
|
566
|
+
<g id="node33" class="node"><title>33</title>
|
|
567
|
+
<ellipse fill="none" stroke="black" cx="6374" cy="-6256.5" rx="135.765" ry="18.3848"/>
|
|
568
|
+
<text text-anchor="middle" x="6374" y="-6252.9" font-family="Times Roman,serif" font-size="14.00">n33_length23_coverage5</text>
|
|
569
|
+
</g>
|
|
570
|
+
<!-- 34 -->
|
|
571
|
+
<g id="node34" class="node"><title>34</title>
|
|
572
|
+
<ellipse fill="none" stroke="black" cx="889.1" cy="-230.795" rx="147.992" ry="18.3848"/>
|
|
573
|
+
<text text-anchor="middle" x="889.1" y="-227.195" font-family="Times Roman,serif" font-size="14.00">n34_length129_coverage29</text>
|
|
574
|
+
</g>
|
|
575
|
+
<!-- 34->97 -->
|
|
576
|
+
<g id="edge126" class="edge"><title>34->97</title>
|
|
577
|
+
<path fill="none" stroke="black" d="M903.157,-249.608C936.647,-294.428 1020.83,-407.097 1054.26,-451.828"/>
|
|
578
|
+
</g>
|
|
579
|
+
<!-- 78 -->
|
|
580
|
+
<g id="node78" class="node"><title>78</title>
|
|
581
|
+
<ellipse fill="none" stroke="black" cx="10775.5" cy="-9718.02" rx="142.128" ry="18.3848"/>
|
|
582
|
+
<text text-anchor="middle" x="10775.5" y="-9714.42" font-family="Times Roman,serif" font-size="14.00">n78_length63_coverage47</text>
|
|
583
|
+
</g>
|
|
584
|
+
<!-- 35->78 -->
|
|
585
|
+
<g id="edge130" class="edge"><title>35->78</title>
|
|
586
|
+
<path fill="none" stroke="black" d="M10990.3,-9883.31C10947.2,-9850.14 10856,-9779.98 10807.5,-9742.63"/>
|
|
587
|
+
<polygon fill="black" stroke="black" points="10809.6,-9739.82 10799.5,-9736.49 10805.3,-9745.36 10809.6,-9739.82"/>
|
|
588
|
+
</g>
|
|
589
|
+
<!-- 54 -->
|
|
590
|
+
<g id="node54" class="node"><title>54</title>
|
|
591
|
+
<ellipse fill="none" stroke="black" cx="590.479" cy="-270.753" rx="142.128" ry="18.3848"/>
|
|
592
|
+
<text text-anchor="middle" x="590.479" y="-267.153" font-family="Times Roman,serif" font-size="14.00">n54_length27_coverage59</text>
|
|
593
|
+
</g>
|
|
594
|
+
<!-- 36->54 -->
|
|
595
|
+
<g id="edge132" class="edge"><title>36->54</title>
|
|
596
|
+
<path fill="none" stroke="black" d="M369.977,-318.601C411.699,-309.547 464.078,-298.181 507.316,-288.799"/>
|
|
597
|
+
<polygon fill="black" stroke="black" points="508.213,-292.186 517.244,-286.645 506.729,-285.345 508.213,-292.186"/>
|
|
598
|
+
</g>
|
|
599
|
+
<!-- 37 -->
|
|
600
|
+
<g id="node37" class="node"><title>37</title>
|
|
601
|
+
<ellipse fill="none" stroke="black" cx="4503.77" cy="-2409.35" rx="147.992" ry="18.3848"/>
|
|
602
|
+
<text text-anchor="middle" x="4503.77" y="-2405.75" font-family="Times Roman,serif" font-size="14.00">n37_length124_coverage22</text>
|
|
603
|
+
</g>
|
|
604
|
+
<!-- 37->85 -->
|
|
605
|
+
<g id="edge134" class="edge"><title>37->85</title>
|
|
606
|
+
<path fill="none" stroke="black" d="M4491.41,-2390.83C4460.31,-2344.27 4379.12,-2222.7 4348.01,-2176.11"/>
|
|
607
|
+
</g>
|
|
608
|
+
<!-- 38 -->
|
|
609
|
+
<g id="node38" class="node"><title>38</title>
|
|
610
|
+
<ellipse fill="none" stroke="black" cx="7122.92" cy="-4224.41" rx="142.128" ry="18.3848"/>
|
|
611
|
+
<text text-anchor="middle" x="7122.92" y="-4220.81" font-family="Times Roman,serif" font-size="14.00">n38_length51_coverage14</text>
|
|
612
|
+
</g>
|
|
613
|
+
<!-- 38->46 -->
|
|
614
|
+
<g id="edge140" class="edge"><title>38->46</title>
|
|
615
|
+
<path fill="none" stroke="blue" d="M7127.77,-4243.13C7140.66,-4292.9 7175.84,-4428.77 7191.22,-4488.14"/>
|
|
616
|
+
<polygon fill="blue" stroke="blue" points="7187.87,-4489.16 7193.77,-4497.97 7194.65,-4487.41 7187.87,-4489.16"/>
|
|
617
|
+
</g>
|
|
618
|
+
<!-- 58 -->
|
|
619
|
+
<g id="node58" class="node"><title>58</title>
|
|
620
|
+
<ellipse fill="none" stroke="black" cx="6833.96" cy="-4133.28" rx="142.128" ry="18.3848"/>
|
|
621
|
+
<text text-anchor="middle" x="6833.96" y="-4129.68" font-family="Times Roman,serif" font-size="14.00">n58_length49_coverage46</text>
|
|
622
|
+
</g>
|
|
623
|
+
<!-- 38->58 -->
|
|
624
|
+
<g id="edge138" class="edge"><title>38->58</title>
|
|
625
|
+
<path fill="none" stroke="black" d="M7068.57,-4207.27C7020.19,-4192.01 6949.36,-4169.68 6898.2,-4153.54"/>
|
|
626
|
+
<polygon fill="black" stroke="black" points="6899.15,-4150.17 6888.56,-4150.5 6897.05,-4156.85 6899.15,-4150.17"/>
|
|
627
|
+
</g>
|
|
628
|
+
<!-- 39 -->
|
|
629
|
+
<g id="node39" class="node"><title>39</title>
|
|
630
|
+
<ellipse fill="none" stroke="black" cx="9726.06" cy="-7579.15" rx="142.128" ry="18.3848"/>
|
|
631
|
+
<text text-anchor="middle" x="9726.06" y="-7575.55" font-family="Times Roman,serif" font-size="14.00">n39_length51_coverage28</text>
|
|
632
|
+
</g>
|
|
633
|
+
<!-- 39->90 -->
|
|
634
|
+
<g id="edge142" class="edge"><title>39->90</title>
|
|
635
|
+
<path fill="none" stroke="black" d="M9691.57,-7561.2C9643.15,-7536 9555.03,-7490.13 9501.98,-7462.52"/>
|
|
636
|
+
<polygon fill="black" stroke="black" points="9503.3,-7459.26 9492.82,-7457.75 9500.07,-7465.47 9503.3,-7459.26"/>
|
|
637
|
+
</g>
|
|
638
|
+
<!-- 66 -->
|
|
639
|
+
<g id="node66" class="node"><title>66</title>
|
|
640
|
+
<ellipse fill="none" stroke="black" cx="8586.03" cy="-6442.49" rx="142.128" ry="18.3848"/>
|
|
641
|
+
<text text-anchor="middle" x="8586.03" y="-6438.89" font-family="Times Roman,serif" font-size="14.00">n66_length51_coverage23</text>
|
|
642
|
+
</g>
|
|
643
|
+
<!-- 40->66 -->
|
|
644
|
+
<g id="edge148" class="edge"><title>40->66</title>
|
|
645
|
+
<path fill="none" stroke="blue" d="M8821.1,-6552.2C8772.03,-6529.3 8686.97,-6489.59 8633.74,-6464.75"/>
|
|
646
|
+
<polygon fill="blue" stroke="blue" points="8635.05,-6461.5 8624.51,-6460.44 8632.09,-6467.85 8635.05,-6461.5"/>
|
|
647
|
+
</g>
|
|
648
|
+
<!-- 74 -->
|
|
649
|
+
<g id="node74" class="node"><title>74</title>
|
|
650
|
+
<ellipse fill="none" stroke="black" cx="9130.84" cy="-6702.16" rx="147.992" ry="18.3848"/>
|
|
651
|
+
<text text-anchor="middle" x="9130.84" y="-6698.56" font-family="Times Roman,serif" font-size="14.00">n74_length237_coverage22</text>
|
|
652
|
+
</g>
|
|
653
|
+
<!-- 40->74 -->
|
|
654
|
+
<g id="edge146" class="edge"><title>40->74</title>
|
|
655
|
+
<path fill="none" stroke="black" d="M8896.29,-6588.03C8948.04,-6613.21 9041.65,-6658.76 9093.59,-6684.04"/>
|
|
656
|
+
</g>
|
|
657
|
+
<!-- 41->9 -->
|
|
658
|
+
<g id="edge34" class="edge"><title>41->9</title>
|
|
659
|
+
<path fill="none" stroke="black" d="M9124.86,-6984.97C9075.93,-6961.14 8989.55,-6919.07 8936.41,-6893.19"/>
|
|
660
|
+
<polygon fill="black" stroke="black" points="8937.74,-6889.94 8927.21,-6888.71 8934.67,-6896.24 8937.74,-6889.94"/>
|
|
661
|
+
</g>
|
|
662
|
+
<!-- 41->74 -->
|
|
663
|
+
<g id="edge150" class="edge"><title>41->74</title>
|
|
664
|
+
<path fill="none" stroke="black" d="M9159.8,-6984.12C9154.57,-6933.16 9140.09,-6792.22 9133.81,-6731.08"/>
|
|
665
|
+
<polygon fill="black" stroke="black" points="9137.27,-6730.56 9132.77,-6720.97 9130.31,-6731.27 9137.27,-6730.56"/>
|
|
666
|
+
</g>
|
|
667
|
+
<!-- 42 -->
|
|
668
|
+
<g id="node42" class="node"><title>42</title>
|
|
669
|
+
<ellipse fill="none" stroke="black" cx="6544.24" cy="-4044.55" rx="142.128" ry="18.3848"/>
|
|
670
|
+
<text text-anchor="middle" x="6544.24" y="-4040.95" font-family="Times Roman,serif" font-size="14.00">n42_length51_coverage25</text>
|
|
671
|
+
</g>
|
|
672
|
+
<!-- 42->51 -->
|
|
673
|
+
<g id="edge154" class="edge"><title>42->51</title>
|
|
674
|
+
<path fill="none" stroke="black" d="M6539.17,-4025.92C6525.72,-3976.5 6489.06,-3841.81 6472.92,-3782.5"/>
|
|
675
|
+
<polygon fill="black" stroke="black" points="6476.25,-3781.4 6470.24,-3772.67 6469.49,-3783.24 6476.25,-3781.4"/>
|
|
676
|
+
</g>
|
|
677
|
+
<!-- 43->62 -->
|
|
678
|
+
<g id="edge158" class="edge"><title>43->62</title>
|
|
679
|
+
<path fill="none" stroke="black" d="M2966.46,-1401.91C2994.14,-1446.44 3064.74,-1560.03 3097.38,-1612.55"/>
|
|
680
|
+
<polygon fill="black" stroke="black" points="3094.58,-1614.68 3102.83,-1621.32 3100.53,-1610.98 3094.58,-1614.68"/>
|
|
681
|
+
</g>
|
|
682
|
+
<!-- 80 -->
|
|
683
|
+
<g id="node80" class="node"><title>80</title>
|
|
684
|
+
<ellipse fill="none" stroke="black" cx="2653.46" cy="-1390.69" rx="142.128" ry="18.3848"/>
|
|
685
|
+
<text text-anchor="middle" x="2653.46" y="-1387.09" font-family="Times Roman,serif" font-size="14.00">n80_length51_coverage18</text>
|
|
686
|
+
</g>
|
|
687
|
+
<!-- 43->80 -->
|
|
688
|
+
<g id="edge160" class="edge"><title>43->80</title>
|
|
689
|
+
<path fill="none" stroke="blue" d="M2815.26,-1386.82C2811.41,-1386.91 2807.56,-1387 2803.7,-1387.09"/>
|
|
690
|
+
<polygon fill="blue" stroke="blue" points="2803.41,-1383.6 2793.5,-1387.34 2803.58,-1390.6 2803.41,-1383.6"/>
|
|
691
|
+
</g>
|
|
692
|
+
<!-- 44 -->
|
|
693
|
+
<g id="node44" class="node"><title>44</title>
|
|
694
|
+
<ellipse fill="none" stroke="black" cx="5102.9" cy="-2381.94" rx="142.128" ry="18.3848"/>
|
|
695
|
+
<text text-anchor="middle" x="5102.9" y="-2378.34" font-family="Times Roman,serif" font-size="14.00">n44_length65_coverage24</text>
|
|
696
|
+
</g>
|
|
697
|
+
<!-- 88 -->
|
|
698
|
+
<g id="node88" class="node"><title>88</title>
|
|
699
|
+
<ellipse fill="none" stroke="black" cx="4805.41" cy="-2401.69" rx="142.128" ry="18.3848"/>
|
|
700
|
+
<text text-anchor="middle" x="4805.41" y="-2398.09" font-family="Times Roman,serif" font-size="14.00">n88_length11_coverage46</text>
|
|
701
|
+
</g>
|
|
702
|
+
<!-- 44->88 -->
|
|
703
|
+
<g id="edge162" class="edge"><title>44->88</title>
|
|
704
|
+
<path fill="none" stroke="black" d="M4976.31,-2390.34C4965.17,-2391.08 4953.86,-2391.83 4942.64,-2392.58"/>
|
|
705
|
+
<polygon fill="black" stroke="black" points="4942.11,-2389.11 4932.37,-2393.26 4942.58,-2396.09 4942.11,-2389.11"/>
|
|
706
|
+
</g>
|
|
707
|
+
<!-- 65 -->
|
|
708
|
+
<g id="node65" class="node"><title>65</title>
|
|
709
|
+
<ellipse fill="none" stroke="black" cx="7615.12" cy="-5203.86" rx="142.128" ry="18.3848"/>
|
|
710
|
+
<text text-anchor="middle" x="7615.12" y="-5200.26" font-family="Times Roman,serif" font-size="14.00">n65_length51_coverage14</text>
|
|
711
|
+
</g>
|
|
712
|
+
<!-- 45->65 -->
|
|
713
|
+
<g id="edge166" class="edge"><title>45->65</title>
|
|
714
|
+
<path fill="none" stroke="black" d="M7557.84,-4926.71C7568.17,-4976.68 7596.69,-5114.67 7609.15,-5175"/>
|
|
715
|
+
<polygon fill="black" stroke="black" points="7605.77,-5175.91 7611.22,-5184.99 7612.62,-5174.49 7605.77,-5175.91"/>
|
|
716
|
+
</g>
|
|
717
|
+
<!-- 82 -->
|
|
718
|
+
<g id="node82" class="node"><title>82</title>
|
|
719
|
+
<ellipse fill="none" stroke="black" cx="1368.21" cy="-438.022" rx="142.128" ry="18.3848"/>
|
|
720
|
+
<text text-anchor="middle" x="1368.21" y="-434.422" font-family="Times Roman,serif" font-size="14.00">n82_length75_coverage32</text>
|
|
721
|
+
</g>
|
|
722
|
+
<!-- 47->82 -->
|
|
723
|
+
<g id="edge170" class="edge"><title>47->82</title>
|
|
724
|
+
<path fill="none" stroke="black" d="M1532.08,-661.834C1499.04,-616.708 1414.98,-501.898 1381.89,-456.706"/>
|
|
725
|
+
</g>
|
|
726
|
+
<!-- 48->44 -->
|
|
727
|
+
<g id="edge164" class="edge"><title>48->44</title>
|
|
728
|
+
<path fill="none" stroke="black" d="M5303.31,-2545.53C5263.07,-2512.68 5179,-2444.05 5133.59,-2406.98"/>
|
|
729
|
+
<polygon fill="black" stroke="black" points="5135.53,-2404.05 5125.57,-2400.44 5131.11,-2409.48 5135.53,-2404.05"/>
|
|
730
|
+
</g>
|
|
731
|
+
<!-- 87 -->
|
|
732
|
+
<g id="node87" class="node"><title>87</title>
|
|
733
|
+
<ellipse fill="none" stroke="black" cx="5011.16" cy="-2617.73" rx="142.128" ry="18.3848"/>
|
|
734
|
+
<text text-anchor="middle" x="5011.16" y="-2614.13" font-family="Times Roman,serif" font-size="14.00">n87_length65_coverage24</text>
|
|
735
|
+
</g>
|
|
736
|
+
<!-- 48->87 -->
|
|
737
|
+
<g id="edge174" class="edge"><title>48->87</title>
|
|
738
|
+
<path fill="none" stroke="black" d="M5238.25,-2578.96C5197.58,-2585.9 5149.12,-2594.17 5107.44,-2601.29"/>
|
|
739
|
+
<polygon fill="black" stroke="black" points="5106.82,-2597.85 5097.55,-2602.98 5108,-2604.75 5106.82,-2597.85"/>
|
|
740
|
+
</g>
|
|
741
|
+
<!-- 49->13 -->
|
|
742
|
+
<g id="edge48" class="edge"><title>49->13</title>
|
|
743
|
+
<path fill="none" stroke="black" d="M7894.18,-5291.36C7883.93,-5241.19 7855.59,-5102.4 7843.29,-5042.2"/>
|
|
744
|
+
<polygon fill="black" stroke="black" points="7846.69,-5041.34 7841.26,-5032.24 7839.83,-5042.74 7846.69,-5041.34"/>
|
|
745
|
+
</g>
|
|
746
|
+
<!-- 49->65 -->
|
|
747
|
+
<g id="edge178" class="edge"><title>49->65</title>
|
|
748
|
+
<path fill="none" stroke="black" d="M7851.25,-5292.38C7798.85,-5272.73 7714.33,-5241.05 7661.89,-5221.39"/>
|
|
749
|
+
</g>
|
|
750
|
+
<!-- 76 -->
|
|
751
|
+
<g id="node76" class="node"><title>76</title>
|
|
752
|
+
<ellipse fill="none" stroke="black" cx="7950.15" cy="-5607.46" rx="142.128" ry="18.3848"/>
|
|
753
|
+
<text text-anchor="middle" x="7950.15" y="-5603.86" font-family="Times Roman,serif" font-size="14.00">n76_length96_coverage21</text>
|
|
754
|
+
</g>
|
|
755
|
+
<!-- 49->76 -->
|
|
756
|
+
<g id="edge180" class="edge"><title>49->76</title>
|
|
757
|
+
<path fill="none" stroke="blue" d="M7901.23,-5328.5C7910.07,-5378.92 7934.53,-5518.36 7945.14,-5578.85"/>
|
|
758
|
+
<polygon fill="blue" stroke="blue" points="7941.72,-5579.61 7946.89,-5588.86 7948.61,-5578.4 7941.72,-5579.61"/>
|
|
759
|
+
</g>
|
|
760
|
+
<!-- 50 -->
|
|
761
|
+
<g id="node50" class="node"><title>50</title>
|
|
762
|
+
<ellipse fill="none" stroke="black" cx="10794.9" cy="-9416.32" rx="142.128" ry="18.3848"/>
|
|
763
|
+
<text text-anchor="middle" x="10794.9" y="-9412.72" font-family="Times Roman,serif" font-size="14.00">n50_length51_coverage24</text>
|
|
764
|
+
</g>
|
|
765
|
+
<!-- 50->70 -->
|
|
766
|
+
<g id="edge184" class="edge"><title>50->70</title>
|
|
767
|
+
<path fill="none" stroke="blue" d="M10768.4,-9397.87C10723.3,-9366.49 10631.9,-9302.78 10581.9,-9267.95"/>
|
|
768
|
+
<polygon fill="blue" stroke="blue" points="10583.9,-9265.05 10573.7,-9262.2 10579.9,-9270.79 10583.9,-9265.05"/>
|
|
769
|
+
</g>
|
|
770
|
+
<!-- 50->78 -->
|
|
771
|
+
<g id="edge182" class="edge"><title>50->78</title>
|
|
772
|
+
<path fill="none" stroke="black" d="M10793.6,-9435.2C10790.2,-9489.38 10780.2,-9644.98 10776.7,-9699.16"/>
|
|
773
|
+
</g>
|
|
774
|
+
<!-- 68 -->
|
|
775
|
+
<g id="node68" class="node"><title>68</title>
|
|
776
|
+
<ellipse fill="none" stroke="black" cx="6176.99" cy="-3659.33" rx="147.992" ry="18.3848"/>
|
|
777
|
+
<text text-anchor="middle" x="6176.99" y="-3655.73" font-family="Times Roman,serif" font-size="14.00">n68_length148_coverage27</text>
|
|
778
|
+
</g>
|
|
779
|
+
<!-- 51->68 -->
|
|
780
|
+
<g id="edge186" class="edge"><title>51->68</title>
|
|
781
|
+
<path fill="none" stroke="black" d="M6412.6,-3736.6C6360.82,-3719.62 6282.11,-3693.8 6230.12,-3676.76"/>
|
|
782
|
+
</g>
|
|
783
|
+
<!-- 52->24 -->
|
|
784
|
+
<g id="edge94" class="edge"><title>52->24</title>
|
|
785
|
+
<path fill="none" stroke="black" d="M10297,-8799.15C10296.3,-8850.24 10294.4,-8991.56 10293.6,-9052.87"/>
|
|
786
|
+
<polygon fill="black" stroke="black" points="10290.1,-9052.96 10293.5,-9063.01 10297.1,-9053.06 10290.1,-9052.96"/>
|
|
787
|
+
</g>
|
|
788
|
+
<!-- 71 -->
|
|
789
|
+
<g id="node71" class="node"><title>71</title>
|
|
790
|
+
<ellipse fill="none" stroke="black" cx="10552.4" cy="-8941.83" rx="147.992" ry="18.3848"/>
|
|
791
|
+
<text text-anchor="middle" x="10552.4" y="-8938.23" font-family="Times Roman,serif" font-size="14.00">n71_length126_coverage25</text>
|
|
792
|
+
</g>
|
|
793
|
+
<!-- 52->71 -->
|
|
794
|
+
<g id="edge190" class="edge"><title>52->71</title>
|
|
795
|
+
<path fill="none" stroke="black" d="M10326,-8798.5C10375.2,-8829.61 10474.7,-8892.62 10523.8,-8923.68"/>
|
|
796
|
+
</g>
|
|
797
|
+
<!-- 81 -->
|
|
798
|
+
<g id="node81" class="node"><title>81</title>
|
|
799
|
+
<ellipse fill="none" stroke="black" cx="10290.4" cy="-8478.45" rx="142.128" ry="18.3848"/>
|
|
800
|
+
<text text-anchor="middle" x="10290.4" y="-8474.85" font-family="Times Roman,serif" font-size="14.00">n81_length54_coverage27</text>
|
|
801
|
+
</g>
|
|
802
|
+
<!-- 52->81 -->
|
|
803
|
+
<g id="edge192" class="edge"><title>52->81</title>
|
|
804
|
+
<path fill="none" stroke="blue" d="M10296.8,-8761.4C10295.7,-8710.27 10292.5,-8568.83 10291.1,-8507.47"/>
|
|
805
|
+
<polygon fill="blue" stroke="blue" points="10294.6,-8507.24 10290.8,-8497.32 10287.6,-8507.4 10294.6,-8507.24"/>
|
|
806
|
+
</g>
|
|
807
|
+
<!-- 53->11 -->
|
|
808
|
+
<g id="edge40" class="edge"><title>53->11</title>
|
|
809
|
+
<path fill="none" stroke="black" d="M8226.32,-5703.01C8217.58,-5652.52 8193.4,-5512.87 8182.91,-5452.29"/>
|
|
810
|
+
<polygon fill="black" stroke="black" points="8186.33,-5451.53 8181.17,-5442.27 8179.43,-5452.72 8186.33,-5451.53"/>
|
|
811
|
+
</g>
|
|
812
|
+
<!-- 53->76 -->
|
|
813
|
+
<g id="edge194" class="edge"><title>53->76</title>
|
|
814
|
+
<path fill="none" stroke="black" d="M8186.2,-5703.93C8133.78,-5682.51 8046.07,-5646.66 7993.6,-5625.22"/>
|
|
815
|
+
</g>
|
|
816
|
+
<!-- 96 -->
|
|
817
|
+
<g id="node96" class="node"><title>96</title>
|
|
818
|
+
<ellipse fill="none" stroke="black" cx="8506.13" cy="-5842.92" rx="142.128" ry="18.3848"/>
|
|
819
|
+
<text text-anchor="middle" x="8506.13" y="-5839.32" font-family="Times Roman,serif" font-size="14.00">n96_length96_coverage22</text>
|
|
820
|
+
</g>
|
|
821
|
+
<!-- 53->96 -->
|
|
822
|
+
<g id="edge196" class="edge"><title>53->96</title>
|
|
823
|
+
<path fill="none" stroke="blue" d="M8270.06,-5739.41C8319.46,-5761.07 8402.94,-5797.67 8456.25,-5821.05"/>
|
|
824
|
+
<polygon fill="blue" stroke="blue" points="8454.95,-5824.3 8465.51,-5825.11 8457.76,-5817.89 8454.95,-5824.3"/>
|
|
825
|
+
</g>
|
|
826
|
+
<!-- 54->34 -->
|
|
827
|
+
<g id="edge128" class="edge"><title>54->34</title>
|
|
828
|
+
<path fill="none" stroke="black" d="M689.915,-257.448C718.145,-253.67 749.062,-249.533 777.938,-245.669"/>
|
|
829
|
+
<polygon fill="black" stroke="black" points="778.612,-249.111 788.059,-244.315 777.683,-242.172 778.612,-249.111"/>
|
|
830
|
+
</g>
|
|
831
|
+
<!-- 75 -->
|
|
832
|
+
<g id="node75" class="node"><title>75</title>
|
|
833
|
+
<ellipse fill="none" stroke="black" cx="770.048" cy="-510.317" rx="147.992" ry="18.3848"/>
|
|
834
|
+
<text text-anchor="middle" x="770.048" y="-506.717" font-family="Times Roman,serif" font-size="14.00">n75_length129_coverage27</text>
|
|
835
|
+
</g>
|
|
836
|
+
<!-- 54->75 -->
|
|
837
|
+
<g id="edge198" class="edge"><title>54->75</title>
|
|
838
|
+
<path fill="none" stroke="black" d="M604.569,-289.551C636.236,-331.798 713.125,-434.376 749.859,-483.383"/>
|
|
839
|
+
<polygon fill="black" stroke="black" points="747.225,-485.704 756.023,-491.606 752.826,-481.506 747.225,-485.704"/>
|
|
840
|
+
</g>
|
|
841
|
+
<!-- 55->31 -->
|
|
842
|
+
<g id="edge120" class="edge"><title>55->31</title>
|
|
843
|
+
<path fill="none" stroke="black" d="M3886.43,-1917.13C3914.06,-1961.82 3984.54,-2075.81 4017.12,-2128.51"/>
|
|
844
|
+
<polygon fill="black" stroke="black" points="4014.33,-2130.65 4022.56,-2137.31 4020.28,-2126.96 4014.33,-2130.65"/>
|
|
845
|
+
</g>
|
|
846
|
+
<!-- 61 -->
|
|
847
|
+
<g id="node61" class="node"><title>61</title>
|
|
848
|
+
<ellipse fill="none" stroke="black" cx="3573.49" cy="-1896.62" rx="147.992" ry="18.3848"/>
|
|
849
|
+
<text text-anchor="middle" x="3573.49" y="-1893.02" font-family="Times Roman,serif" font-size="14.00">n61_length267_coverage24</text>
|
|
850
|
+
</g>
|
|
851
|
+
<!-- 55->61 -->
|
|
852
|
+
<g id="edge204" class="edge"><title>55->61</title>
|
|
853
|
+
<path fill="none" stroke="blue" d="M3733.06,-1897.68C3732.59,-1897.68 3732.11,-1897.67 3731.63,-1897.67"/>
|
|
854
|
+
<polygon fill="blue" stroke="blue" points="3731.62,-1894.17 3721.6,-1897.6 3731.57,-1901.17 3731.62,-1894.17"/>
|
|
855
|
+
</g>
|
|
856
|
+
<!-- 84 -->
|
|
857
|
+
<g id="node84" class="node"><title>84</title>
|
|
858
|
+
<ellipse fill="none" stroke="black" cx="4176.36" cy="-1900.23" rx="142.128" ry="18.3848"/>
|
|
859
|
+
<text text-anchor="middle" x="4176.36" y="-1896.63" font-family="Times Roman,serif" font-size="14.00">n84_length78_coverage19</text>
|
|
860
|
+
</g>
|
|
861
|
+
<!-- 55->84 -->
|
|
862
|
+
<g id="edge202" class="edge"><title>55->84</title>
|
|
863
|
+
<path fill="none" stroke="black" d="M4017.29,-1899.38C4019.58,-1899.4 4021.87,-1899.41 4024.17,-1899.42"/>
|
|
864
|
+
<polygon fill="black" stroke="black" points="4024.2,-1902.92 4034.22,-1899.47 4024.24,-1895.92 4024.2,-1902.92"/>
|
|
865
|
+
</g>
|
|
866
|
+
<!-- 73 -->
|
|
867
|
+
<g id="node73" class="node"><title>73</title>
|
|
868
|
+
<ellipse fill="none" stroke="black" cx="11380.6" cy="-10891.8" rx="142.128" ry="18.3848"/>
|
|
869
|
+
<text text-anchor="middle" x="11380.6" y="-10888.2" font-family="Times Roman,serif" font-size="14.00">n73_length51_coverage25</text>
|
|
870
|
+
</g>
|
|
871
|
+
<!-- 56->73 -->
|
|
872
|
+
<g id="edge206" class="edge"><title>56->73</title>
|
|
873
|
+
<path fill="none" stroke="black" d="M11178.1,-10711.6C11218.1,-10747.1 11306.3,-10825.7 11352,-10866.3"/>
|
|
874
|
+
<polygon fill="black" stroke="black" points="11349.9,-10869.2 11359.7,-10873.2 11354.6,-10864 11349.9,-10869.2"/>
|
|
875
|
+
</g>
|
|
876
|
+
<!-- 57 -->
|
|
877
|
+
<g id="node57" class="node"><title>57</title>
|
|
878
|
+
<ellipse fill="none" stroke="black" cx="11458.5" cy="-11650.7" rx="142.128" ry="18.3848"/>
|
|
879
|
+
<text text-anchor="middle" x="11458.5" y="-11647.1" font-family="Times Roman,serif" font-size="14.00">n57_length53_coverage17</text>
|
|
880
|
+
</g>
|
|
881
|
+
<!-- 57->23 -->
|
|
882
|
+
<g id="edge90" class="edge"><title>57->23</title>
|
|
883
|
+
<path fill="none" stroke="black" d="M11434.2,-11632.3C11392.1,-11600.4 11306,-11535.2 11259,-11499.6"/>
|
|
884
|
+
<polygon fill="black" stroke="black" points="11261,-11496.7 11250.9,-11493.5 11256.8,-11502.3 11261,-11496.7"/>
|
|
885
|
+
</g>
|
|
886
|
+
<!-- 83 -->
|
|
887
|
+
<g id="node83" class="node"><title>83</title>
|
|
888
|
+
<ellipse fill="none" stroke="black" cx="11550.6" cy="-11371.8" rx="147.992" ry="18.3848"/>
|
|
889
|
+
<text text-anchor="middle" x="11550.6" y="-11368.2" font-family="Times Roman,serif" font-size="14.00">n83_length174_coverage25</text>
|
|
890
|
+
</g>
|
|
891
|
+
<!-- 57->83 -->
|
|
892
|
+
<g id="edge210" class="edge"><title>57->83</title>
|
|
893
|
+
<path fill="none" stroke="black" d="M11464.7,-11632C11480.5,-11584.2 11522.4,-11457.3 11541.2,-11400.3"/>
|
|
894
|
+
<polygon fill="black" stroke="black" points="11544.6,-11401.1 11544.4,-11390.5 11538,-11398.9 11544.6,-11401.1"/>
|
|
895
|
+
</g>
|
|
896
|
+
<!-- 58->42 -->
|
|
897
|
+
<g id="edge156" class="edge"><title>58->42</title>
|
|
898
|
+
<path fill="none" stroke="black" d="M6778.1,-4116.18C6729.91,-4101.42 6660.25,-4080.08 6609.5,-4064.54"/>
|
|
899
|
+
<polygon fill="black" stroke="black" points="6610.52,-4061.19 6599.93,-4061.61 6608.47,-4067.88 6610.52,-4061.19"/>
|
|
900
|
+
</g>
|
|
901
|
+
<!-- 86 -->
|
|
902
|
+
<g id="node86" class="node"><title>86</title>
|
|
903
|
+
<ellipse fill="none" stroke="black" cx="6754.97" cy="-3842.46" rx="142.128" ry="18.3848"/>
|
|
904
|
+
<text text-anchor="middle" x="6754.97" y="-3838.86" font-family="Times Roman,serif" font-size="14.00">n86_length51_coverage16</text>
|
|
905
|
+
</g>
|
|
906
|
+
<!-- 58->86 -->
|
|
907
|
+
<g id="edge212" class="edge"><title>58->86</title>
|
|
908
|
+
<path fill="none" stroke="black" d="M6828.9,-4114.65C6815.47,-4065.21 6778.87,-3930.48 6762.76,-3871.15"/>
|
|
909
|
+
<polygon fill="black" stroke="black" points="6766.09,-3870.05 6760.09,-3861.32 6759.33,-3871.89 6766.09,-3870.05"/>
|
|
910
|
+
</g>
|
|
911
|
+
<!-- 93 -->
|
|
912
|
+
<g id="node93" class="node"><title>93</title>
|
|
913
|
+
<ellipse fill="none" stroke="black" cx="6910.12" cy="-4424.93" rx="142.128" ry="18.3848"/>
|
|
914
|
+
<text text-anchor="middle" x="6910.12" y="-4421.33" font-family="Times Roman,serif" font-size="14.00">n93_length51_coverage24</text>
|
|
915
|
+
</g>
|
|
916
|
+
<!-- 58->93 -->
|
|
917
|
+
<g id="edge214" class="edge"><title>58->93</title>
|
|
918
|
+
<path fill="none" stroke="blue" d="M6838.84,-4151.97C6851.82,-4201.67 6887.24,-4337.31 6902.72,-4396.59"/>
|
|
919
|
+
<polygon fill="blue" stroke="blue" points="6899.37,-4397.61 6905.28,-4406.4 6906.14,-4395.84 6899.37,-4397.61"/>
|
|
920
|
+
</g>
|
|
921
|
+
<!-- 59->83 -->
|
|
922
|
+
<g id="edge216" class="edge"><title>59->83</title>
|
|
923
|
+
<path fill="none" stroke="black" d="M11339.7,-11205.5C11384.6,-11240.9 11482.5,-11318.2 11527.3,-11353.5"/>
|
|
924
|
+
</g>
|
|
925
|
+
<!-- 60->32 -->
|
|
926
|
+
<g id="edge124" class="edge"><title>60->32</title>
|
|
927
|
+
<path fill="none" stroke="black" d="M10028.2,-8307.55C10025.5,-8256.48 10018.2,-8115.23 10014.9,-8053.96"/>
|
|
928
|
+
<polygon fill="black" stroke="black" points="10018.4,-8053.62 10014.4,-8043.82 10011.4,-8053.99 10018.4,-8053.62"/>
|
|
929
|
+
</g>
|
|
930
|
+
<!-- 94 -->
|
|
931
|
+
<g id="node94" class="node"><title>94</title>
|
|
932
|
+
<ellipse fill="none" stroke="black" cx="9764.15" cy="-8181.49" rx="147.992" ry="18.3848"/>
|
|
933
|
+
<text text-anchor="middle" x="9764.15" y="-8177.89" font-family="Times Roman,serif" font-size="14.00">n94_length102_coverage23</text>
|
|
934
|
+
</g>
|
|
935
|
+
<!-- 60->94 -->
|
|
936
|
+
<g id="edge220" class="edge"><title>60->94</title>
|
|
937
|
+
<path fill="none" stroke="black" d="M9996.17,-8308.35C9948.12,-8282.08 9858.96,-8233.33 9806.26,-8204.52"/>
|
|
938
|
+
<polygon fill="black" stroke="black" points="9807.63,-8201.28 9797.18,-8199.55 9804.27,-8207.42 9807.63,-8201.28"/>
|
|
939
|
+
</g>
|
|
940
|
+
<!-- 61->16 -->
|
|
941
|
+
<g id="edge62" class="edge"><title>61->16</title>
|
|
942
|
+
<path fill="none" stroke="black" d="M3562.16,-1878.06C3534.81,-1833.26 3465.05,-1718.99 3432.8,-1666.15"/>
|
|
943
|
+
<polygon fill="black" stroke="black" points="3435.61,-1664.04 3427.41,-1657.33 3429.63,-1667.69 3435.61,-1664.04"/>
|
|
944
|
+
</g>
|
|
945
|
+
<!-- 63->47 -->
|
|
946
|
+
<g id="edge172" class="edge"><title>63->47</title>
|
|
947
|
+
<path fill="none" stroke="black" d="M1706.29,-907.477C1675.93,-864.562 1600.47,-757.876 1564.87,-707.549"/>
|
|
948
|
+
<polygon fill="black" stroke="black" points="1567.54,-705.263 1558.91,-699.12 1561.83,-709.305 1567.54,-705.263"/>
|
|
949
|
+
</g>
|
|
950
|
+
<!-- 64 -->
|
|
951
|
+
<g id="node64" class="node"><title>64</title>
|
|
952
|
+
<ellipse fill="none" stroke="black" cx="4636.6" cy="-2151.72" rx="147.992" ry="18.3848"/>
|
|
953
|
+
<text text-anchor="middle" x="4636.6" y="-2148.12" font-family="Times Roman,serif" font-size="14.00">n64_length124_coverage27</text>
|
|
954
|
+
</g>
|
|
955
|
+
<!-- 64->88 -->
|
|
956
|
+
<g id="edge224" class="edge"><title>64->88</title>
|
|
957
|
+
<path fill="none" stroke="black" d="M4649.28,-2170.51C4680.65,-2216.95 4761.53,-2336.72 4792.8,-2383.03"/>
|
|
958
|
+
</g>
|
|
959
|
+
<!-- 66->98 -->
|
|
960
|
+
<g id="edge228" class="edge"><title>66->98</title>
|
|
961
|
+
<path fill="none" stroke="black" d="M8583.74,-6423.71C8577.54,-6372.86 8560.39,-6232.22 8552.94,-6171.2"/>
|
|
962
|
+
<polygon fill="black" stroke="black" points="8556.4,-6170.61 8551.71,-6161.11 8549.45,-6171.46 8556.4,-6170.61"/>
|
|
963
|
+
</g>
|
|
964
|
+
<!-- 67 -->
|
|
965
|
+
<g id="node67" class="node"><title>67</title>
|
|
966
|
+
<ellipse fill="none" stroke="black" cx="5503.49" cy="-2291.14" rx="142.128" ry="18.3848"/>
|
|
967
|
+
<text text-anchor="middle" x="5503.49" y="-2287.54" font-family="Times Roman,serif" font-size="14.00">n67_length50_coverage13</text>
|
|
968
|
+
</g>
|
|
969
|
+
<!-- 67->48 -->
|
|
970
|
+
<g id="edge176" class="edge"><title>67->48</title>
|
|
971
|
+
<path fill="none" stroke="black" d="M5491.28,-2309.89C5460.48,-2357.22 5379.5,-2481.66 5343.55,-2536.9"/>
|
|
972
|
+
<polygon fill="black" stroke="black" points="5340.5,-2535.17 5337.98,-2545.46 5346.37,-2538.99 5340.5,-2535.17"/>
|
|
973
|
+
</g>
|
|
974
|
+
<!-- 68->99 -->
|
|
975
|
+
<g id="edge230" class="edge"><title>68->99</title>
|
|
976
|
+
<path fill="none" stroke="blue" d="M6172.31,-3640.59C6159.86,-3590.76 6125.86,-3454.72 6111.01,-3395.28"/>
|
|
977
|
+
<polygon fill="blue" stroke="blue" points="6114.37,-3394.29 6108.55,-3385.44 6107.58,-3395.99 6114.37,-3394.29"/>
|
|
978
|
+
</g>
|
|
979
|
+
<!-- 69 -->
|
|
980
|
+
<g id="node69" class="node"><title>69</title>
|
|
981
|
+
<ellipse fill="none" stroke="black" cx="10529.3" cy="-9545.11" rx="142.128" ry="18.3848"/>
|
|
982
|
+
<text text-anchor="middle" x="10529.3" y="-9541.51" font-family="Times Roman,serif" font-size="14.00">n69_length51_coverage25</text>
|
|
983
|
+
</g>
|
|
984
|
+
<!-- 69->70 -->
|
|
985
|
+
<g id="edge232" class="edge"><title>69->70</title>
|
|
986
|
+
<path fill="none" stroke="black" d="M10530.5,-9526.27C10533.5,-9475.23 10542,-9334.08 10545.7,-9272.85"/>
|
|
987
|
+
<polygon fill="black" stroke="black" points="10549.2,-9272.91 10546.3,-9262.72 10542.2,-9272.49 10549.2,-9272.91"/>
|
|
988
|
+
</g>
|
|
989
|
+
<!-- 70->71 -->
|
|
990
|
+
<g id="edge236" class="edge"><title>70->71</title>
|
|
991
|
+
<path fill="none" stroke="black" d="M10547.7,-9224.99C10548.6,-9173.69 10550.9,-9031.6 10551.9,-8970.44"/>
|
|
992
|
+
<polygon fill="black" stroke="black" points="10555.5,-8970.39 10552.1,-8960.33 10548.5,-8970.27 10555.5,-8970.39"/>
|
|
993
|
+
</g>
|
|
994
|
+
<!-- 73->59 -->
|
|
995
|
+
<g id="edge218" class="edge"><title>73->59</title>
|
|
996
|
+
<path fill="none" stroke="black" d="M11376.4,-10910.7C11365.5,-10961 11335.7,-11098.4 11322.6,-11158.4"/>
|
|
997
|
+
<polygon fill="black" stroke="black" points="11319.2,-11157.8 11320.5,-11168.3 11326,-11159.3 11319.2,-11157.8"/>
|
|
998
|
+
</g>
|
|
999
|
+
<!-- 75->97 -->
|
|
1000
|
+
<g id="edge238" class="edge"><title>75->97</title>
|
|
1001
|
+
<path fill="none" stroke="black" d="M871.422,-496.8C903.587,-492.511 939.065,-487.78 970.937,-483.53"/>
|
|
1002
|
+
</g>
|
|
1003
|
+
<!-- 77->78 -->
|
|
1004
|
+
<g id="edge240" class="edge"><title>77->78</title>
|
|
1005
|
+
<path fill="none" stroke="black" d="M10743.8,-9999.37C10749.5,-9948.52 10765.4,-9807.89 10772.3,-9746.88"/>
|
|
1006
|
+
<polygon fill="black" stroke="black" points="10775.8,-9747.12 10773.4,-9736.79 10768.8,-9746.33 10775.8,-9747.12"/>
|
|
1007
|
+
</g>
|
|
1008
|
+
<!-- 78->69 -->
|
|
1009
|
+
<g id="edge234" class="edge"><title>78->69</title>
|
|
1010
|
+
<path fill="none" stroke="black" d="M10749.2,-9699.52C10704.4,-9668.06 10613.4,-9604.16 10563.7,-9569.24"/>
|
|
1011
|
+
<polygon fill="black" stroke="black" points="10565.7,-9566.36 10555.5,-9563.48 10561.7,-9572.09 10565.7,-9566.36"/>
|
|
1012
|
+
</g>
|
|
1013
|
+
<!-- 79->54 -->
|
|
1014
|
+
<g id="edge200" class="edge"><title>79->54</title>
|
|
1015
|
+
<path fill="none" stroke="black" d="M440.286,-37.9752C468.568,-81.8079 539.83,-192.254 572.996,-243.658"/>
|
|
1016
|
+
<polygon fill="black" stroke="black" points="570.178,-245.746 578.541,-252.251 576.06,-241.951 570.178,-245.746"/>
|
|
1017
|
+
</g>
|
|
1018
|
+
<!-- 80->6 -->
|
|
1019
|
+
<g id="edge24" class="edge"><title>80->6</title>
|
|
1020
|
+
<path fill="none" stroke="black" d="M2641.44,-1372.05C2612.93,-1327.83 2541.11,-1216.39 2507.68,-1164.53"/>
|
|
1021
|
+
<polygon fill="black" stroke="black" points="2510.45,-1162.37 2502.09,-1155.86 2504.56,-1166.16 2510.45,-1162.37"/>
|
|
1022
|
+
</g>
|
|
1023
|
+
<!-- 81->60 -->
|
|
1024
|
+
<g id="edge222" class="edge"><title>81->60</title>
|
|
1025
|
+
<path fill="none" stroke="black" d="M10259.2,-8460.26C10211.7,-8432.62 10121.3,-8380.04 10069.1,-8349.66"/>
|
|
1026
|
+
<polygon fill="black" stroke="black" points="10070.9,-8346.62 10060.5,-8344.62 10067.4,-8352.67 10070.9,-8346.62"/>
|
|
1027
|
+
</g>
|
|
1028
|
+
<!-- 82->97 -->
|
|
1029
|
+
<g id="edge242" class="edge"><title>82->97</title>
|
|
1030
|
+
<path fill="none" stroke="blue" d="M1259.07,-449.858C1234.92,-452.477 1209.25,-455.262 1184.82,-457.911"/>
|
|
1031
|
+
<polygon fill="blue" stroke="blue" points="1184.37,-454.44 1174.8,-458.998 1185.12,-461.399 1184.37,-454.44"/>
|
|
1032
|
+
</g>
|
|
1033
|
+
<!-- 84->85 -->
|
|
1034
|
+
<g id="edge244" class="edge"><title>84->85</title>
|
|
1035
|
+
<path fill="none" stroke="black" d="M4187.81,-1918.74C4215.47,-1963.42 4286,-2077.39 4318.62,-2130.08"/>
|
|
1036
|
+
<polygon fill="black" stroke="black" points="4315.82,-2132.22 4324.06,-2138.88 4321.78,-2128.54 4315.82,-2132.22"/>
|
|
1037
|
+
</g>
|
|
1038
|
+
<!-- 85->64 -->
|
|
1039
|
+
<g id="edge226" class="edge"><title>85->64</title>
|
|
1040
|
+
<path fill="none" stroke="black" d="M4476.42,-2154.83C4477.57,-2154.81 4478.71,-2154.79 4479.86,-2154.77"/>
|
|
1041
|
+
<polygon fill="black" stroke="black" points="4480.28,-2158.26 4490.21,-2154.56 4480.14,-2151.26 4480.28,-2158.26"/>
|
|
1042
|
+
</g>
|
|
1043
|
+
<!-- 86->51 -->
|
|
1044
|
+
<g id="edge188" class="edge"><title>86->51</title>
|
|
1045
|
+
<path fill="none" stroke="black" d="M6699.08,-3825.37C6650.86,-3810.62 6581.17,-3789.31 6530.4,-3773.79"/>
|
|
1046
|
+
<polygon fill="black" stroke="black" points="6531.41,-3770.44 6520.83,-3770.86 6529.37,-3777.13 6531.41,-3770.44"/>
|
|
1047
|
+
</g>
|
|
1048
|
+
<!-- 87->88 -->
|
|
1049
|
+
<g id="edge246" class="edge"><title>87->88</title>
|
|
1050
|
+
<path fill="none" stroke="black" d="M4993.62,-2599.31C4956.95,-2560.81 4872.1,-2471.72 4830.01,-2427.52"/>
|
|
1051
|
+
<polygon fill="black" stroke="black" points="4832.34,-2424.89 4822.91,-2420.07 4827.27,-2429.72 4832.34,-2424.89"/>
|
|
1052
|
+
</g>
|
|
1053
|
+
<!-- 88->37 -->
|
|
1054
|
+
<g id="edge136" class="edge"><title>88->37</title>
|
|
1055
|
+
<path fill="none" stroke="black" d="M4665.63,-2405.24C4663.46,-2405.3 4661.29,-2405.35 4659.12,-2405.41"/>
|
|
1056
|
+
<polygon fill="black" stroke="black" points="4658.86,-2401.91 4648.96,-2405.66 4659.04,-2408.91 4658.86,-2401.91"/>
|
|
1057
|
+
</g>
|
|
1058
|
+
<!-- 89 -->
|
|
1059
|
+
<g id="node89" class="node"><title>89</title>
|
|
1060
|
+
<ellipse fill="none" stroke="black" cx="9480.14" cy="-7740.67" rx="142.128" ry="18.3848"/>
|
|
1061
|
+
<text text-anchor="middle" x="9480.14" y="-7737.07" font-family="Times Roman,serif" font-size="14.00">n89_length51_coverage23</text>
|
|
1062
|
+
</g>
|
|
1063
|
+
<!-- 89->90 -->
|
|
1064
|
+
<g id="edge248" class="edge"><title>89->90</title>
|
|
1065
|
+
<path fill="none" stroke="black" d="M9478.76,-7721.84C9475.01,-7670.84 9464.65,-7529.78 9460.16,-7468.59"/>
|
|
1066
|
+
<polygon fill="black" stroke="black" points="9463.64,-7468.18 9459.42,-7458.47 9456.66,-7468.7 9463.64,-7468.18"/>
|
|
1067
|
+
</g>
|
|
1068
|
+
<!-- 91 -->
|
|
1069
|
+
<g id="node91" class="node"><title>91</title>
|
|
1070
|
+
<ellipse fill="none" stroke="black" cx="9431.5" cy="-7138.66" rx="142.128" ry="18.3848"/>
|
|
1071
|
+
<text text-anchor="middle" x="9431.5" y="-7135.06" font-family="Times Roman,serif" font-size="14.00">n91_length51_coverage25</text>
|
|
1072
|
+
</g>
|
|
1073
|
+
<!-- 90->91 -->
|
|
1074
|
+
<g id="edge252" class="edge"><title>90->91</title>
|
|
1075
|
+
<path fill="none" stroke="black" d="M9456.37,-7420.82C9451.88,-7369.83 9439.45,-7228.79 9434.05,-7167.6"/>
|
|
1076
|
+
<polygon fill="black" stroke="black" points="9437.52,-7167.14 9433.16,-7157.48 9430.55,-7167.75 9437.52,-7167.14"/>
|
|
1077
|
+
</g>
|
|
1078
|
+
<!-- 91->41 -->
|
|
1079
|
+
<g id="edge152" class="edge"><title>91->41</title>
|
|
1080
|
+
<path fill="none" stroke="black" d="M9395.68,-7120.64C9347,-7096.15 9259.98,-7052.36 9206.89,-7025.65"/>
|
|
1081
|
+
<polygon fill="black" stroke="black" points="9208.21,-7022.4 9197.71,-7021.03 9205.07,-7028.65 9208.21,-7022.4"/>
|
|
1082
|
+
</g>
|
|
1083
|
+
<!-- 92->56 -->
|
|
1084
|
+
<g id="edge208" class="edge"><title>92->56</title>
|
|
1085
|
+
<path fill="none" stroke="black" d="M11205.3,-10413.7C11196.7,-10464.2 11172.8,-10604 11162.5,-10664.6"/>
|
|
1086
|
+
<polygon fill="black" stroke="black" points="11159,-10664.1 11160.7,-10674.6 11165.9,-10665.3 11159,-10664.1"/>
|
|
1087
|
+
</g>
|
|
1088
|
+
<!-- 93->46 -->
|
|
1089
|
+
<g id="edge168" class="edge"><title>93->46</title>
|
|
1090
|
+
<path fill="none" stroke="black" d="M6964.04,-4442.05C7012.45,-4457.43 7083.57,-4480.01 7134.79,-4496.27"/>
|
|
1091
|
+
<polygon fill="black" stroke="black" points="7133.84,-4499.65 7144.43,-4499.34 7135.96,-4492.97 7133.84,-4499.65"/>
|
|
1092
|
+
</g>
|
|
1093
|
+
<!-- 94->95 -->
|
|
1094
|
+
<g id="edge254" class="edge"><title>94->95</title>
|
|
1095
|
+
<path fill="none" stroke="black" d="M9763.14,-8162.65C9760.41,-8111.63 9752.86,-7970.48 9749.58,-7909.26"/>
|
|
1096
|
+
<polygon fill="black" stroke="black" points="9753.07,-7908.93 9749.04,-7899.13 9746.08,-7909.3 9753.07,-7908.93"/>
|
|
1097
|
+
</g>
|
|
1098
|
+
<!-- 95->39 -->
|
|
1099
|
+
<g id="edge144" class="edge"><title>95->39</title>
|
|
1100
|
+
<path fill="none" stroke="black" d="M9746.66,-7861.46C9742.94,-7810.44 9732.64,-7669.32 9728.17,-7608.11"/>
|
|
1101
|
+
<polygon fill="black" stroke="black" points="9731.65,-7607.7 9727.43,-7597.98 9724.67,-7608.21 9731.65,-7607.7"/>
|
|
1102
|
+
</g>
|
|
1103
|
+
<!-- 95->89 -->
|
|
1104
|
+
<g id="edge250" class="edge"><title>95->89</title>
|
|
1105
|
+
<path fill="none" stroke="black" d="M9713.56,-7862.33C9665.17,-7837.11 9577.09,-7791.2 9524.06,-7763.57"/>
|
|
1106
|
+
<polygon fill="black" stroke="black" points="9525.39,-7760.31 9514.91,-7758.79 9522.16,-7766.52 9525.39,-7760.31"/>
|
|
1107
|
+
</g>
|
|
1108
|
+
<!-- 96->98 -->
|
|
1109
|
+
<g id="edge256" class="edge"><title>96->98</title>
|
|
1110
|
+
<path fill="none" stroke="black" d="M8508.84,-5861.65C8516.62,-5915.42 8538.94,-6069.85 8546.72,-6123.62"/>
|
|
1111
|
+
</g>
|
|
1112
|
+
<!-- 99->27 -->
|
|
1113
|
+
<g id="edge104" class="edge"><title>99->27</title>
|
|
1114
|
+
<path fill="none" stroke="black" d="M6068.87,-3348.95C6020.84,-3324.41 5934.56,-3280.32 5882.17,-3253.55"/>
|
|
1115
|
+
<polygon fill="black" stroke="black" points="5883.61,-3250.35 5873.11,-3248.92 5880.43,-3256.58 5883.61,-3250.35"/>
|
|
1116
|
+
</g>
|
|
1117
|
+
</g>
|
|
1118
|
+
</svg>
|