fhir_client 1.0.1
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- checksums.yaml +7 -0
- data/.gitignore +38 -0
- data/.travis.yml +10 -0
- data/Gemfile +9 -0
- data/Gemfile.lock +98 -0
- data/LICENSE +201 -0
- data/README.md +135 -0
- data/Rakefile +25 -0
- data/fhir_client.gemspec +21 -0
- data/lib/client_interface.rb +525 -0
- data/lib/feed_format.rb +10 -0
- data/lib/fhir_api_validation.json +360 -0
- data/lib/fhir_client.rb +41 -0
- data/lib/model/bundle.rb +32 -0
- data/lib/model/client_reply.rb +172 -0
- data/lib/model/tag.rb +57 -0
- data/lib/patch_format.rb +10 -0
- data/lib/resource_address.rb +133 -0
- data/lib/resource_format.rb +10 -0
- data/lib/sections/crud.rb +170 -0
- data/lib/sections/feed.rb +23 -0
- data/lib/sections/history.rb +78 -0
- data/lib/sections/operations.rb +118 -0
- data/lib/sections/search.rb +53 -0
- data/lib/sections/tags.rb +64 -0
- data/lib/sections/transactions.rb +83 -0
- data/lib/sections/validate.rb +49 -0
- data/lib/tasks/tasks.rake +73 -0
- data/test/fixtures/bundle-example.xml +79 -0
- data/test/fixtures/parameters-example.json +18 -0
- data/test/fixtures/parameters-example.xml +17 -0
- data/test/simplecov.rb +17 -0
- data/test/test_helper.rb +8 -0
- data/test/unit/basic_test.rb +17 -0
- data/test/unit/bundle_test.rb +21 -0
- data/test/unit/parameters_test.rb +44 -0
- metadata +177 -0
@@ -0,0 +1,79 @@
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<Bundle xmlns="http://hl7.org/fhir">
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<id value="example"/>
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<meta>
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<versionId value="1"/>
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<lastUpdated value="2014-08-18T01:43:30Z"/>
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</meta>
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<type value="transaction"/>
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<base value="http://example.com/base"/>
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<total value="3"/>
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<link>
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<relation value="next"/>
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<url value="https://example.com/base/MedicationOrder?patient=347&searchId=ff15fd40-ff71-4b48-b366-09c
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706bed9d0&page=2"/>
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</link>
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<link>
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<relation value="self"/>
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<url value="https://example.com/base/MedicationOrder?patient=347"/>
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</link>
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<entry>
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<status value="update"/>
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<resource>
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<MedicationOrder>
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<id value="3123"/>
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<meta>
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<versionId value="1"/>
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<lastUpdated value="2014-08-16T05:31:17Z"/>
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</meta>
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<text>
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<status value="generated"/>
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<div xmlns="http://www.w3.org/1999/xhtml"><!-- Snipped for brevity --></div>
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</text>
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<status value="active"/>
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<patient>
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<reference value="Patient/example"/>
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</patient>
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<prescriber>
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<reference value="Practitioner/example"/>
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</prescriber>
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<medicationReference>
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<reference value="Medication/example"/>
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</medicationReference>
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<dosageInstruction>
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<timing>
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<repeat>
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<frequency value="3"/>
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<duration value="1"/>
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<units value="d"/>
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</repeat>
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</timing>
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<route>
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<coding>
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<system value="http://snomed.info/sct"/>
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<code value="394899003"/>
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<display value="oral administration of treatment"/>
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</coding>
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</route>
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<doseQuantity>
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<value value="5"/>
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<units value="ml"/>
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<system value="http://unitsofmeasure.org"/>
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<code value="ml"/>
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</doseQuantity>
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</dosageInstruction>
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<dispenseRequest>
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<quantity>
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<value value="100"/>
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<units value="ml"/>
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<system value="http://unitsofmeasure.org"/>
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<code value="ml"/>
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</quantity>
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</dispenseRequest>
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</MedicationOrder>
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</resource>
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</entry>
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79
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</Bundle>
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@@ -0,0 +1,18 @@
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1
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{
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2
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"resourceType": "Parameters",
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3
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"id": "example",
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"parameter": [
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{
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"name": "start",
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7
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"valueDate": "2010-01-01"
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8
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},
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9
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{
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"name": "end",
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"resource": {
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"resourceType": "Binary",
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"contentType": "text/plain",
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14
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"content": "VGhpcyBpcyBhIHRlc3QgZXhhbXBsZQ=="
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}
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}
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]
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}
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@@ -0,0 +1,17 @@
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1
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<?xml version="1.0" encoding="UTF-8"?>
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2
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<Parameters xmlns="http://hl7.org/fhir">
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3
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<id value="example"/>
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<parameter>
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5
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<name value="start"/>
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6
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<valueDate value="2010-01-01"/>
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7
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</parameter>
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8
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<parameter>
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<name value="end"/>
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10
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<resource>
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11
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<Binary>
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12
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<contentType value="text/plain"/>
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13
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<content value="VGhpcyBpcyBhIHRlc3QgZXhhbXBsZQ=="/>
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14
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</Binary>
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</resource>
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</parameter>
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17
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</Parameters>
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data/test/simplecov.rb
ADDED
@@ -0,0 +1,17 @@
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1
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require 'simplecov'
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2
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SimpleCov.command_name 'Unit Tests'
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3
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SimpleCov.start do
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4
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add_filter "test/"
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5
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add_group "Library", "lib"
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6
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end
|
7
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|
8
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class SimpleCov::Formatter::QualityFormatter
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9
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def format(result)
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10
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SimpleCov::Formatter::HTMLFormatter.new.format(result)
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11
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File.open("coverage/covered_percent", "w") do |f|
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12
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f.puts result.source_files.covered_percent.to_f
|
13
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end
|
14
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end
|
15
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end
|
16
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|
17
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SimpleCov.formatter = SimpleCov::Formatter::QualityFormatter
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data/test/test_helper.rb
ADDED
@@ -0,0 +1,17 @@
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1
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require_relative '../test_helper'
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2
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3
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class BasicTest < Test::Unit::TestCase
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4
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5
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TESTING_ENDPOINT = 'http://fhirtest.uhn.ca/baseDstu3'
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6
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|
7
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def test_client_initialization
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8
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client = FHIR::Client.new(TESTING_ENDPOINT)
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9
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assert !client.use_format_param, "Using _format instead of [Accept] headers."
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10
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end
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11
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12
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def test_conformance
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13
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client = FHIR::Client.new(TESTING_ENDPOINT)
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14
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assert !client.conformanceStatement.nil?, "Unable to retrieve conformance statement."
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15
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end
|
16
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|
17
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end
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@@ -0,0 +1,21 @@
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require_relative '../test_helper'
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2
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3
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class BundleTest < Test::Unit::TestCase
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4
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|
5
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def test_example_bundle
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6
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client = FHIR::Client.new("feed-test")
|
7
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root = File.expand_path '..', File.dirname(File.absolute_path(__FILE__))
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8
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bundle_xml = File.read(File.join(root, 'fixtures', 'bundle-example.xml'))
|
9
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response = {
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10
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:code => '200',
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11
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:headers => {},
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12
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:body => bundle_xml
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13
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}
|
14
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clientReply = FHIR::ClientReply.new('feed-test', response)
|
15
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|
16
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bundle = client.parse_reply(FHIR::Bundle, FHIR::Formats::FeedFormat::FEED_XML, clientReply)
|
17
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|
18
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assert !bundle.nil?, "Failed to parse example Bundle."
|
19
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end
|
20
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|
21
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end
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@@ -0,0 +1,44 @@
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1
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require_relative '../test_helper'
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2
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3
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class ParametersTest < Test::Unit::TestCase
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4
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# <?xml version="1.0" encoding="UTF-8"?>
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5
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# <Parameters xmlns="http://hl7.org/fhir">
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6
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# <id value="example"/>
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7
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# <parameter>
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8
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# <name value="start"/>
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9
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# <valueDate value="2010-01-01"/>
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10
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# </parameter>
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11
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# <parameter>
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12
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# <name value="end"/>
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13
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# <resource>
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14
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# <Binary>
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15
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# <contentType value="text/plain"/>
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16
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# <content value="VGhpcyBpcyBhIHRlc3QgZXhhbXBsZQ=="/>
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17
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# </Binary>
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18
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# </resource>
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19
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# </parameter>
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20
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# </Parameters>
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21
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def test_example_parameters_xml
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22
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root = File.expand_path '..', File.dirname(File.absolute_path(__FILE__))
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23
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xml = File.read(File.join(root, 'fixtures', 'parameters-example.xml'))
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24
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parameters = FHIR::Xml.from_xml(xml)
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25
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check_params(parameters)
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26
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end
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27
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|
28
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def test_example_parameters_json
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29
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root = File.expand_path '..', File.dirname(File.absolute_path(__FILE__))
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30
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json = File.read(File.join(root, 'fixtures', 'parameters-example.json'))
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31
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parameters = FHIR::Json.from_json(json)
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32
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check_params(parameters)
|
33
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end
|
34
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|
35
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def check_params(parameters)
|
36
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message = "Failed to parse example Parameters."
|
37
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assert parameters.parameter.length==2, message
|
38
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assert parameters.parameter[0].name=='start', message
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39
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assert parameters.parameter[0].valueDate=='2010-01-01', message
|
40
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assert parameters.parameter[1].name=='end', message
|
41
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assert !parameters.parameter[1].resource.nil? && parameters.parameter[1].resource.class==FHIR::Binary, message
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42
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end
|
43
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|
44
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end
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metadata
ADDED
@@ -0,0 +1,177 @@
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1
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--- !ruby/object:Gem::Specification
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2
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name: fhir_client
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3
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version: !ruby/object:Gem::Version
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4
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version: 1.0.1
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5
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platform: ruby
|
6
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authors:
|
7
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- Andre Quina
|
8
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- Jason Walonoski
|
9
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- Janoo Fernandes
|
10
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autorequire:
|
11
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bindir: bin
|
12
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cert_chain: []
|
13
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date: 2016-06-08 00:00:00.000000000 Z
|
14
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dependencies:
|
15
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- !ruby/object:Gem::Dependency
|
16
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name: fhir_models
|
17
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requirement: !ruby/object:Gem::Requirement
|
18
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requirements:
|
19
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- - "~>"
|
20
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+
- !ruby/object:Gem::Version
|
21
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version: '0.3'
|
22
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type: :runtime
|
23
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prerelease: false
|
24
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version_requirements: !ruby/object:Gem::Requirement
|
25
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requirements:
|
26
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+
- - "~>"
|
27
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+
- !ruby/object:Gem::Version
|
28
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version: '0.3'
|
29
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- !ruby/object:Gem::Dependency
|
30
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name: tilt
|
31
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requirement: !ruby/object:Gem::Requirement
|
32
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requirements:
|
33
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+
- - ">="
|
34
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+
- !ruby/object:Gem::Version
|
35
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version: '1.1'
|
36
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type: :runtime
|
37
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prerelease: false
|
38
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version_requirements: !ruby/object:Gem::Requirement
|
39
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requirements:
|
40
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+
- - ">="
|
41
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+
- !ruby/object:Gem::Version
|
42
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version: '1.1'
|
43
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+
- !ruby/object:Gem::Dependency
|
44
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+
name: rest-client
|
45
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+
requirement: !ruby/object:Gem::Requirement
|
46
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requirements:
|
47
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+
- - "~>"
|
48
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+
- !ruby/object:Gem::Version
|
49
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+
version: '1.8'
|
50
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+
type: :runtime
|
51
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+
prerelease: false
|
52
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+
version_requirements: !ruby/object:Gem::Requirement
|
53
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requirements:
|
54
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+
- - "~>"
|
55
|
+
- !ruby/object:Gem::Version
|
56
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+
version: '1.8'
|
57
|
+
- !ruby/object:Gem::Dependency
|
58
|
+
name: oauth2
|
59
|
+
requirement: !ruby/object:Gem::Requirement
|
60
|
+
requirements:
|
61
|
+
- - "~>"
|
62
|
+
- !ruby/object:Gem::Version
|
63
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+
version: '1.1'
|
64
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+
type: :runtime
|
65
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+
prerelease: false
|
66
|
+
version_requirements: !ruby/object:Gem::Requirement
|
67
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+
requirements:
|
68
|
+
- - "~>"
|
69
|
+
- !ruby/object:Gem::Version
|
70
|
+
version: '1.1'
|
71
|
+
- !ruby/object:Gem::Dependency
|
72
|
+
name: activesupport
|
73
|
+
requirement: !ruby/object:Gem::Requirement
|
74
|
+
requirements:
|
75
|
+
- - ">="
|
76
|
+
- !ruby/object:Gem::Version
|
77
|
+
version: '3'
|
78
|
+
type: :runtime
|
79
|
+
prerelease: false
|
80
|
+
version_requirements: !ruby/object:Gem::Requirement
|
81
|
+
requirements:
|
82
|
+
- - ">="
|
83
|
+
- !ruby/object:Gem::Version
|
84
|
+
version: '3'
|
85
|
+
- !ruby/object:Gem::Dependency
|
86
|
+
name: addressable
|
87
|
+
requirement: !ruby/object:Gem::Requirement
|
88
|
+
requirements:
|
89
|
+
- - ">="
|
90
|
+
- !ruby/object:Gem::Version
|
91
|
+
version: '2.3'
|
92
|
+
type: :runtime
|
93
|
+
prerelease: false
|
94
|
+
version_requirements: !ruby/object:Gem::Requirement
|
95
|
+
requirements:
|
96
|
+
- - ">="
|
97
|
+
- !ruby/object:Gem::Version
|
98
|
+
version: '2.3'
|
99
|
+
- !ruby/object:Gem::Dependency
|
100
|
+
name: pry
|
101
|
+
requirement: !ruby/object:Gem::Requirement
|
102
|
+
requirements:
|
103
|
+
- - ">="
|
104
|
+
- !ruby/object:Gem::Version
|
105
|
+
version: '0'
|
106
|
+
type: :development
|
107
|
+
prerelease: false
|
108
|
+
version_requirements: !ruby/object:Gem::Requirement
|
109
|
+
requirements:
|
110
|
+
- - ">="
|
111
|
+
- !ruby/object:Gem::Version
|
112
|
+
version: '0'
|
113
|
+
description: A Gem for handling FHIR client requests in ruby
|
114
|
+
email: aquina@mitre.org
|
115
|
+
executables: []
|
116
|
+
extensions: []
|
117
|
+
extra_rdoc_files: []
|
118
|
+
files:
|
119
|
+
- ".gitignore"
|
120
|
+
- ".travis.yml"
|
121
|
+
- Gemfile
|
122
|
+
- Gemfile.lock
|
123
|
+
- LICENSE
|
124
|
+
- README.md
|
125
|
+
- Rakefile
|
126
|
+
- fhir_client.gemspec
|
127
|
+
- lib/client_interface.rb
|
128
|
+
- lib/feed_format.rb
|
129
|
+
- lib/fhir_api_validation.json
|
130
|
+
- lib/fhir_client.rb
|
131
|
+
- lib/model/bundle.rb
|
132
|
+
- lib/model/client_reply.rb
|
133
|
+
- lib/model/tag.rb
|
134
|
+
- lib/patch_format.rb
|
135
|
+
- lib/resource_address.rb
|
136
|
+
- lib/resource_format.rb
|
137
|
+
- lib/sections/crud.rb
|
138
|
+
- lib/sections/feed.rb
|
139
|
+
- lib/sections/history.rb
|
140
|
+
- lib/sections/operations.rb
|
141
|
+
- lib/sections/search.rb
|
142
|
+
- lib/sections/tags.rb
|
143
|
+
- lib/sections/transactions.rb
|
144
|
+
- lib/sections/validate.rb
|
145
|
+
- lib/tasks/tasks.rake
|
146
|
+
- test/fixtures/bundle-example.xml
|
147
|
+
- test/fixtures/parameters-example.json
|
148
|
+
- test/fixtures/parameters-example.xml
|
149
|
+
- test/simplecov.rb
|
150
|
+
- test/test_helper.rb
|
151
|
+
- test/unit/basic_test.rb
|
152
|
+
- test/unit/bundle_test.rb
|
153
|
+
- test/unit/parameters_test.rb
|
154
|
+
homepage: https://github.com/hl7-fhir/fhir-svn
|
155
|
+
licenses: []
|
156
|
+
metadata: {}
|
157
|
+
post_install_message:
|
158
|
+
rdoc_options: []
|
159
|
+
require_paths:
|
160
|
+
- lib
|
161
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
162
|
+
requirements:
|
163
|
+
- - ">="
|
164
|
+
- !ruby/object:Gem::Version
|
165
|
+
version: '0'
|
166
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
167
|
+
requirements:
|
168
|
+
- - ">="
|
169
|
+
- !ruby/object:Gem::Version
|
170
|
+
version: '0'
|
171
|
+
requirements: []
|
172
|
+
rubyforge_project:
|
173
|
+
rubygems_version: 2.4.3
|
174
|
+
signing_key:
|
175
|
+
specification_version: 4
|
176
|
+
summary: A Gem for handling FHIR client requests in ruby
|
177
|
+
test_files: []
|