fhir_client 1.0.1
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- checksums.yaml +7 -0
- data/.gitignore +38 -0
- data/.travis.yml +10 -0
- data/Gemfile +9 -0
- data/Gemfile.lock +98 -0
- data/LICENSE +201 -0
- data/README.md +135 -0
- data/Rakefile +25 -0
- data/fhir_client.gemspec +21 -0
- data/lib/client_interface.rb +525 -0
- data/lib/feed_format.rb +10 -0
- data/lib/fhir_api_validation.json +360 -0
- data/lib/fhir_client.rb +41 -0
- data/lib/model/bundle.rb +32 -0
- data/lib/model/client_reply.rb +172 -0
- data/lib/model/tag.rb +57 -0
- data/lib/patch_format.rb +10 -0
- data/lib/resource_address.rb +133 -0
- data/lib/resource_format.rb +10 -0
- data/lib/sections/crud.rb +170 -0
- data/lib/sections/feed.rb +23 -0
- data/lib/sections/history.rb +78 -0
- data/lib/sections/operations.rb +118 -0
- data/lib/sections/search.rb +53 -0
- data/lib/sections/tags.rb +64 -0
- data/lib/sections/transactions.rb +83 -0
- data/lib/sections/validate.rb +49 -0
- data/lib/tasks/tasks.rake +73 -0
- data/test/fixtures/bundle-example.xml +79 -0
- data/test/fixtures/parameters-example.json +18 -0
- data/test/fixtures/parameters-example.xml +17 -0
- data/test/simplecov.rb +17 -0
- data/test/test_helper.rb +8 -0
- data/test/unit/basic_test.rb +17 -0
- data/test/unit/bundle_test.rb +21 -0
- data/test/unit/parameters_test.rb +44 -0
- metadata +177 -0
checksums.yaml
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---
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SHA1:
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metadata.gz: 00a173dc4e9ddb7b710daea38e2f89d3790db646
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data.tar.gz: 6b5d0bc26cb16a2771b7ed760fa5be7ce8449868
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SHA512:
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metadata.gz: 6dd8dbf2f5265f2755d7aacf63d052c0d525df7dfee39f9251f908d8de929af40d9d57aaef73233c2ffc4dc3b3ab23048c5af1abcbcfac24b574e27c459ff17b
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data.tar.gz: f915a5d4f7b7bed90935c80f2015533de1b0ff6e943f8935502039b2fb82b906ebc2e9ae763d0913a82971a913a32da35788e657839cef3659cbaf6e2395c071
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data/.gitignore
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*.gem
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*.rbc
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/.config
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/coverage/
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/InstalledFiles
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/pkg/
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/spec/reports/
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/test/tmp/
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/test/version_tmp/
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/tmp/
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## Specific to RubyMotion:
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.dat*
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.repl_history
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build/
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## Documentation cache and generated files:
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/.yardoc/
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/_yardoc/
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/doc/
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/rdoc/
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## Environment normalisation:
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/.bundle/
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/lib/bundler/man/
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# for a library or gem, you might want to ignore these files since the code is
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# intended to run in multiple environments; otherwise, check them in:
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# Gemfile.lock
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# .ruby-version
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# .ruby-gemset
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# unless supporting rvm < 1.11.0 or doing something fancy, ignore this:
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.rvmrc
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# Logs
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*.log
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*.log.*
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data/.travis.yml
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data/Gemfile
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data/Gemfile.lock
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PATH
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remote: .
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specs:
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fhir_client (1.0.0)
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activesupport (>= 3)
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addressable (>= 2.3)
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fhir_models (~> 0.3)
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oauth2 (~> 1.1)
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rest-client (~> 1.8)
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tilt (>= 1.1)
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GEM
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remote: http://rubygems.org/
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specs:
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activesupport (4.0.13)
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i18n (~> 0.6, >= 0.6.9)
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minitest (~> 4.2)
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multi_json (~> 1.3)
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thread_safe (~> 0.1)
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tzinfo (~> 0.3.37)
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addressable (2.4.0)
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ansi (1.5.0)
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awesome_print (1.6.1)
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bcp47 (0.3.3)
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i18n
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coderay (1.1.1)
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date_time_precision (0.8.1)
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docile (1.1.5)
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domain_name (0.5.20160310)
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unf (>= 0.0.5, < 1.0.0)
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faraday (0.9.2)
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multipart-post (>= 1.2, < 3)
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fhir_models (0.3.0)
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bcp47 (>= 0.3)
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date_time_precision (>= 0.8)
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mime-types (>= 1.16, < 3)
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nokogiri (>= 1.6)
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rake (>= 0.8.7)
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http-cookie (1.0.2)
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domain_name (~> 0.5)
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i18n (0.7.0)
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json (1.8.2)
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jwt (1.5.1)
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method_source (0.8.2)
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mime-types (2.99.2)
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mini_portile2 (2.0.0)
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minitest (4.7.5)
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multi_json (1.12.1)
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multi_xml (0.5.5)
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multipart-post (2.0.0)
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netrc (0.11.0)
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nokogiri (1.6.7.2)
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mini_portile2 (~> 2.0.0.rc2)
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oauth2 (1.1.0)
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faraday (>= 0.8, < 0.10)
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jwt (~> 1.0, < 1.5.2)
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multi_json (~> 1.3)
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multi_xml (~> 0.5)
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rack (>= 1.2, < 3)
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pry (0.10.3)
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coderay (~> 1.1.0)
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method_source (~> 0.8.1)
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slop (~> 3.4)
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rack (1.6.4)
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rake (11.1.2)
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rest-client (1.8.0)
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http-cookie (>= 1.0.2, < 2.0)
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mime-types (>= 1.16, < 3.0)
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netrc (~> 0.7)
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simplecov (0.10.0)
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docile (~> 1.1.0)
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json (~> 1.8)
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simplecov-html (~> 0.10.0)
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simplecov-html (0.10.0)
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slop (3.6.0)
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thread_safe (0.3.5)
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tilt (2.0.4)
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turn (0.9.7)
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ansi
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minitest (~> 4)
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tzinfo (0.3.49)
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unf (0.1.4)
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unf_ext
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unf_ext (0.0.7.2)
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PLATFORMS
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ruby
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DEPENDENCIES
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awesome_print
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fhir_client!
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minitest (~> 4.0)
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pry
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simplecov
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turn
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BUNDLED WITH
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1.11.2
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data/LICENSE
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Apache License
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incurred by, or claims asserted against, such Contributor by reason
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of your accepting any such warranty or additional liability.
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END OF TERMS AND CONDITIONS
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APPENDIX: How to apply the Apache License to your work.
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To apply the Apache License to your work, attach the following
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boilerplate notice, with the fields enclosed by brackets "{}"
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replaced with your own identifying information. (Don't include
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the brackets!) The text should be enclosed in the appropriate
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comment syntax for the file format. We also recommend that a
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file or class name and description of purpose be included on the
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same "printed page" as the copyright notice for easier
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identification within third-party archives.
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Copyright {yyyy} {name of copyright owner}
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Licensed under the Apache License, Version 2.0 (the "License");
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you may not use this file except in compliance with the License.
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You may obtain a copy of the License at
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http://www.apache.org/licenses/LICENSE-2.0
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Unless required by applicable law or agreed to in writing, software
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distributed under the License is distributed on an "AS IS" BASIS,
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WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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See the License for the specific language governing permissions and
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limitations under the License.
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data/README.md
ADDED
@@ -0,0 +1,135 @@
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1
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+
# FHIR Client [![Build Status](https://travis-ci.org/fhir-crucible/fhir_client.svg?branch=master)](https://travis-ci.org/fhir-crucible/fhir_client)
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Ruby FHIR client.
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+
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Supports:
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* FHIR STU3
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* XML and JSON
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* All CRUD, including version read and history
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* Transactions and Batches
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* Search
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* Operations (e.g. `$everything`, `$validate`)
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* Support for OAuth2
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+
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### Getting Started
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$ bundle install
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$ bundle exec rake fhir:console
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+
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### Creating a Client
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```ruby
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client = FHIR::Client.new(url)
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```
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+
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### Searching
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```ruby
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reply = client.search(FHIR::Patient, search: {parameters: {name: 'P'}})
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bundle = reply.resource
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patient = bundle.entry.first.resource
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+
```
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### Fetching a Bundle
|
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+
```ruby
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|
+
reply = client.read_feed(FHIR::Patient) # fetch Bundle of Patients
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|
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bundle = reply.resource
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bundle.entry.each do |entry|
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patient = entry.resource
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puts patient.name[0].text
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|
+
end
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puts reply.code # HTTP 200 (or whatever was returned)
|
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|
+
puts reply.body # Raw XML or JSON
|
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+
```
|
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|
+
|
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+
### CRUD Examples
|
44
|
+
```ruby
|
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|
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# read an existing patient with id "example"
|
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|
+
patient = client.read(FHIR::Patient, "example").resource
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47
|
+
|
48
|
+
# read specifying Formats
|
49
|
+
patient = client.read(FHIR::Patient, "example", FHIR::Formats::FeedFormat::FEED_JSON).resource
|
50
|
+
|
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|
+
# create a patient
|
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|
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patient = FHIR::Patient.new
|
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|
+
patient_id = client.create(patient).id
|
54
|
+
|
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|
+
# update the patient
|
56
|
+
patient.gender = 'female'
|
57
|
+
client.update(patient, patient_id)
|
58
|
+
|
59
|
+
# conditional update
|
60
|
+
p_identifier = FHIR::Identifier.new
|
61
|
+
p_identifier.use = 'official'
|
62
|
+
p_identifier.system = 'http://projectcrucible.org'
|
63
|
+
p_identifier.value = '123'
|
64
|
+
patient.identifier = [ p_identifier ]
|
65
|
+
searchParams = { :identifier => 'http://projectcrucible.org|123' }
|
66
|
+
client.conditional_update(patient, patient_id, searchParams)
|
67
|
+
|
68
|
+
# conditional create
|
69
|
+
ifNoneExist = { :identifier => 'http://projectcrucible.org|123' }
|
70
|
+
client.conditional_create(patient, ifNoneExist)
|
71
|
+
|
72
|
+
# destroy the patient
|
73
|
+
client.destroy(FHIR::Patient, patient_id)
|
74
|
+
```
|
75
|
+
|
76
|
+
### Transactions
|
77
|
+
```ruby
|
78
|
+
# Create a patient
|
79
|
+
@patient = FHIR::Patient.new
|
80
|
+
@patient.id = 'temporary_id'
|
81
|
+
|
82
|
+
# Create an observation
|
83
|
+
@observation = FHIR::Observation.new
|
84
|
+
@observation.status = 'final'
|
85
|
+
@coding = FHIR::Coding.new
|
86
|
+
@coding.system = 'http://loinc.org'
|
87
|
+
@coding.code='8302-2'
|
88
|
+
@observation.code = FHIR::CodeableConcept.new
|
89
|
+
@observation.code.coding = [ @coding ]
|
90
|
+
@quantity = FHIR::Quantity.new
|
91
|
+
@quantity.value = 170
|
92
|
+
@quantity.unit = 'cm'
|
93
|
+
@quantity.system = 'http://unitsofmeasure.org'
|
94
|
+
@observation.valueQuantity = @quantity
|
95
|
+
@reference = FHIR::Reference.new
|
96
|
+
@reference.reference = "Patient/#{@patient.id}"
|
97
|
+
@observation.subject = @reference
|
98
|
+
|
99
|
+
# Submit them both as a transaction
|
100
|
+
@client.begin_transaction
|
101
|
+
@client.add_transaction_request('POST',nil,@patient)
|
102
|
+
@client.add_transaction_request('POST',nil,@observation)
|
103
|
+
reply = @client.end_transaction
|
104
|
+
```
|
105
|
+
|
106
|
+
### OAuth2 Support
|
107
|
+
```ruby
|
108
|
+
client = FHIR::Client.new(url)
|
109
|
+
client_id = 'example'
|
110
|
+
client_secret = 'secret'
|
111
|
+
options = client.get_oauth2_metadata_from_conformance
|
112
|
+
if options.empty?
|
113
|
+
puts 'This server does not support the expected OAuth2 extensions.'
|
114
|
+
else
|
115
|
+
client.set_oauth2_auth(client_id,client_secret,options[:site],options[:authorize_url],options[:token_url])
|
116
|
+
reply = client.read_feed(FHIR::Patient)
|
117
|
+
puts reply.body
|
118
|
+
end
|
119
|
+
```
|
120
|
+
|
121
|
+
# License
|
122
|
+
|
123
|
+
Copyright 2014-2016 The MITRE Corporation
|
124
|
+
|
125
|
+
Licensed under the Apache License, Version 2.0 (the "License");
|
126
|
+
you may not use this file except in compliance with the License.
|
127
|
+
You may obtain a copy of the License at
|
128
|
+
|
129
|
+
http://www.apache.org/licenses/LICENSE-2.0
|
130
|
+
|
131
|
+
Unless required by applicable law or agreed to in writing, software
|
132
|
+
distributed under the License is distributed on an "AS IS" BASIS,
|
133
|
+
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
134
|
+
See the License for the specific language governing permissions and
|
135
|
+
limitations under the License.
|