dor-services 6.0.0 → 6.0.1
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- checksums.yaml +4 -4
- data/lib/dor-services.rb +7 -6
- data/lib/dor/certificate_authenticated_rest_resource_factory.rb +2 -1
- data/lib/dor/config.rb +38 -37
- data/lib/dor/datastreams/administrative_metadata_ds.rb +98 -98
- data/lib/dor/datastreams/content_metadata_ds.rb +26 -17
- data/lib/dor/datastreams/datastream_spec_solrizer.rb +4 -2
- data/lib/dor/datastreams/default_object_rights_ds.rb +10 -7
- data/lib/dor/datastreams/desc_metadata_ds.rb +6 -6
- data/lib/dor/datastreams/embargo_metadata_ds.rb +94 -94
- data/lib/dor/datastreams/events_ds.rb +55 -54
- data/lib/dor/datastreams/geo_metadata_ds.rb +7 -6
- data/lib/dor/datastreams/identity_metadata_ds.rb +128 -125
- data/lib/dor/datastreams/provenance_metadata_ds.rb +3 -1
- data/lib/dor/datastreams/rights_metadata_ds.rb +4 -4
- data/lib/dor/datastreams/role_metadata_ds.rb +42 -42
- data/lib/dor/datastreams/simple_dublin_core_ds.rb +45 -43
- data/lib/dor/datastreams/technical_metadata_ds.rb +3 -1
- data/lib/dor/datastreams/version_metadata_ds.rb +12 -5
- data/lib/dor/datastreams/workflow_definition_ds.rb +74 -73
- data/lib/dor/datastreams/workflow_ds.rb +12 -7
- data/lib/dor/exceptions.rb +2 -0
- data/lib/dor/indexers/data_indexer.rb +16 -0
- data/lib/dor/indexers/describable_indexer.rb +2 -0
- data/lib/dor/indexers/editable_indexer.rb +2 -0
- data/lib/dor/indexers/identifiable_indexer.rb +23 -8
- data/lib/dor/indexers/processable_indexer.rb +2 -0
- data/lib/dor/indexers/releasable_indexer.rb +2 -0
- data/lib/dor/models/abstract.rb +2 -0
- data/lib/dor/models/admin_policy_object.rb +2 -0
- data/lib/dor/models/agreement.rb +2 -0
- data/lib/dor/models/collection.rb +3 -0
- data/lib/dor/models/concerns/assembleable.rb +2 -0
- data/lib/dor/models/concerns/contentable.rb +5 -2
- data/lib/dor/models/concerns/describable.rb +7 -2
- data/lib/dor/models/concerns/editable.rb +28 -21
- data/lib/dor/models/concerns/embargoable.rb +4 -0
- data/lib/dor/models/concerns/eventable.rb +2 -0
- data/lib/dor/models/concerns/geoable.rb +2 -0
- data/lib/dor/models/concerns/governable.rb +7 -2
- data/lib/dor/models/concerns/identifiable.rb +33 -34
- data/lib/dor/models/concerns/itemizable.rb +4 -1
- data/lib/dor/models/concerns/preservable.rb +2 -0
- data/lib/dor/models/concerns/processable.rb +15 -9
- data/lib/dor/models/concerns/publishable.rb +9 -4
- data/lib/dor/models/concerns/releaseable.rb +21 -11
- data/lib/dor/models/concerns/rightsable.rb +2 -0
- data/lib/dor/models/concerns/shelvable.rb +6 -2
- data/lib/dor/models/concerns/versionable.rb +8 -4
- data/lib/dor/models/item.rb +2 -0
- data/lib/dor/models/set.rb +2 -0
- data/lib/dor/models/workflow_object.rb +5 -1
- data/lib/dor/rest_resource_factory.rb +2 -0
- data/lib/dor/services/cleanup_reset_service.rb +2 -1
- data/lib/dor/services/cleanup_service.rb +2 -1
- data/lib/dor/services/digital_stacks_service.rb +3 -1
- data/lib/dor/services/indexing_service.rb +3 -1
- data/lib/dor/services/merge_service.rb +6 -4
- data/lib/dor/services/metadata_handlers/catalog_handler.rb +2 -0
- data/lib/dor/services/metadata_service.rb +4 -4
- data/lib/dor/services/public_desc_metadata_service.rb +16 -8
- data/lib/dor/services/public_xml_service.rb +7 -4
- data/lib/dor/services/registration_service.rb +25 -20
- data/lib/dor/services/reset_workspace_service.rb +4 -4
- data/lib/dor/services/sdr_ingest_service.rb +4 -2
- data/lib/dor/services/search_service.rb +8 -9
- data/lib/dor/services/suri_service.rb +3 -2
- data/lib/dor/services/technical_metadata_service.rb +15 -9
- data/lib/dor/services/thumbnail_service.rb +14 -10
- data/lib/dor/utils/hydrus_shims.rb +2 -0
- data/lib/dor/utils/ng_tidy.rb +3 -7
- data/lib/dor/utils/predicate_patch.rb +2 -0
- data/lib/dor/utils/sdr_client.rb +3 -0
- data/lib/dor/utils/solr_doc_helper.rb +4 -2
- data/lib/dor/version.rb +3 -1
- data/lib/dor/workflow/document.rb +113 -108
- data/lib/dor/workflow/process.rb +90 -87
- data/lib/tasks/rdoc.rake +4 -3
- metadata +4 -4
@@ -1,3 +1,5 @@
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# frozen_string_literal: true
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module Dor
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class Collection < Dor::Set
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include Releaseable
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has_object_type 'collection'
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self.resource_indexer = CompositeIndexer.new(
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DataIndexer,
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DescribableIndexer,
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IdentifiableIndexer,
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ProcessableIndexer,
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# frozen_string_literal: true
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module Dor
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module Contentable
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extend ActiveSupport::Concern
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xml = datastreams['contentMetadata'].ng_xml
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# make sure the resource exists
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raise 'resource doesnt exist.' if xml.search('//resource[@id=\'' + resource + '\']').length == 0
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sftp = Net::SFTP.start(Config.content.content_server, Config.content.content_user, :auth_methods => ['publickey'])
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druid_tools = DruidTools::Druid.new(pid, Config.content.content_base_dir)
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location = druid_tools.path(file_name)
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sha1 = Digest::SHA1.file(file.path).hexdigest
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size = File.size?(file.path)
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# update contentmd
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file_hash = {:name => file_name, :md5 => md5, :publish => publish, :shelve => shelve, :preserve => preserve, :size => size.to_s, :sha1 => sha1, :mime_type => mime_type}
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file_hash = { :name => file_name, :md5 => md5, :publish => publish, :shelve => shelve, :preserve => preserve, :size => size.to_s, :sha1 => sha1, :mime_type => mime_type }
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begin
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sftp.stat!(location.gsub(file_name, ''))
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begin
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sha1 = Digest::SHA1.file(file.path).hexdigest
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size = File.size?(file.path)
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# update contentmd
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file_hash = {:name => file_name, :md5 => md5, :size => size.to_s, :sha1 => sha1}
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file_hash = { :name => file_name, :md5 => md5, :size => size.to_s, :sha1 => sha1 }
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begin
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sftp.stat!(location)
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sftp.upload!(file.path, location)
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# frozen_string_literal: true
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module Dor
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module Describable
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extend ActiveSupport::Concern
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MODS_TO_DC_XSLT = Nokogiri::XSLT(File.new(File.expand_path(File.dirname(__FILE__) + "/mods2dc.xslt")))
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XMLNS_OAI_DC = 'http://www.openarchives.org/OAI/2.0/oai_dc/'
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XMLNS_DC = 'http://purl.org/dc/elements/1.1/'
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XMLNS_OAI_DC = 'http://www.openarchives.org/OAI/2.0/oai_dc/'
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XMLNS_DC = 'http://purl.org/dc/elements/1.1/'
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class CrosswalkError < Exception; end
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def build_descMetadata_datastream(ds)
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content = fetch_descMetadata_datastream
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return nil if content.nil?
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ds.dsLabel = 'Descriptive Metadata'
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ds.ng_xml = Nokogiri::XML(content)
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ds.ng_xml.normalize_text!
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dc_doc.xpath('/oai_dc:dc/*[count(text()) = 0]', oai_dc: XMLNS_OAI_DC).remove # Remove empty nodes
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raise CrosswalkError, "Dor::Item#generate_dublin_core produced incorrect xml (no root):\n#{dc_doc.to_xml}" if dc_doc.root.nil?
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raise CrosswalkError, "Dor::Item#generate_dublin_core produced incorrect xml (no children):\n#{dc_doc.to_xml}" if dc_doc.root.children.size == 0
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dc_doc
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end
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unless force || descMetadata.new?
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raise 'Cannot proceed, there is already content in the descriptive metadata datastream: ' + descMetadata.content.to_s
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end
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label = self.label
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builder = Nokogiri::XML::Builder.new { |xml|
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xml.mods(Dor::DescMetadataDS::MODS_HEADER_CONFIG) {
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# frozen_string_literal: true
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module Dor
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## This is basically used just by APOs. Arguably "editable" is the wrong name.
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module Editable
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# TODO: need some way to do versioning. for instance, what happens when a new version of an existing license comes
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# out, since it will presumably use the same license code, but a different title and URI?
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CREATIVE_COMMONS_USE_LICENSES = {
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'by' =>
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'by-sa' =>
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'by_sa' =>
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'by-nd' =>
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'by-nc' =>
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'by' => { :human_readable => 'Attribution 3.0 Unported',
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:uri => 'https://creativecommons.org/licenses/by/3.0/' },
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'by-sa' => { :human_readable => 'Attribution Share Alike 3.0 Unported',
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:uri => 'https://creativecommons.org/licenses/by-sa/3.0/' },
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'by_sa' => { :human_readable => 'Attribution Share Alike 3.0 Unported',
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:uri => 'https://creativecommons.org/licenses/by-sa/3.0/',
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:deprecation_warning => 'license code "by_sa" was a typo in argo, prefer "by-sa"' },
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'by-nd' => { :human_readable => 'Attribution No Derivatives 3.0 Unported',
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:uri => 'https://creativecommons.org/licenses/by-nd/3.0/' },
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'by-nc' => { :human_readable => 'Attribution Non-Commercial 3.0 Unported',
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:uri => 'https://creativecommons.org/licenses/by-nc/3.0/' },
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'by-nc-sa' => { :human_readable => 'Attribution Non-Commercial Share Alike 3.0 Unported',
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:uri => 'https://creativecommons.org/licenses/by-nc-sa/3.0/' },
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'by-nc-nd' => { :human_readable => 'Attribution Non-Commercial, No Derivatives 3.0 Unported',
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:uri => 'https://creativecommons.org/licenses/by-nc-nd/3.0/' },
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'pdm' =>
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'pdm' => { :human_readable => 'Public Domain Mark 1.0',
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:uri => 'https://creativecommons.org/publicdomain/mark/1.0/' }
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}.freeze
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OPEN_DATA_COMMONS_USE_LICENSES = {
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'pddl' =>
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'odc-by' =>
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'pddl' => { :human_readable => 'Open Data Commons Public Domain Dedication and License 1.0',
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:uri => 'http://opendatacommons.org/licenses/pddl/1.0/' },
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'odc-by' => { :human_readable => 'Open Data Commons Attribution License 1.0',
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:uri => 'http://opendatacommons.org/licenses/by/1.0/' },
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'odc-odbl' => { :human_readable => 'Open Data Commons Open Database License 1.0',
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:uri => 'http://opendatacommons.org/licenses/odbl/1.0/' }
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}.freeze
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end
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def mods_title=(val)
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descMetadata.update_values({[:title_info, :main_title] => val})
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descMetadata.update_values({ [:title_info, :main_title] => val })
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end
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# get all collections listed for this APO, used during registration
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administrativeMetadata.ng_xml_will_change!
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administrativeMetadata.add_child_node(administrativeMetadata, :descMetadata)
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end
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administrativeMetadata.update_values({[:descMetadata, :source] => val})
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administrativeMetadata.update_values({ [:descMetadata, :source] => val })
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end
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def use_statement
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def use_license
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return creative_commons_license unless creative_commons_license.blank?
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return open_data_commons_license unless open_data_commons_license.blank?
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nil
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end
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def use_license_uri
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return defaultObjectRights.creative_commons.uri.first unless defaultObjectRights.creative_commons.uri.blank?
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return defaultObjectRights.open_data_commons.uri.first unless defaultObjectRights.open_data_commons.uri.blank?
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+
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nil
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end
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def use_license_human
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return creative_commons_license_human unless creative_commons_license_human.blank?
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return open_data_commons_license_human unless open_data_commons_license_human.blank?
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nil
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end
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@@ -293,7 +298,7 @@ module Dor
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administrativeMetadata.ng_xml_will_change!
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administrativeMetadata.add_child_node(administrativeMetadata.ng_xml.root, :metadata_format)
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end
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administrativeMetadata.update_values({[:metadata_format] => format})
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administrativeMetadata.update_values({ [:metadata_format] => format })
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end
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def desc_metadata_source
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administrativeMetadata.ng_xml_will_change!
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administrativeMetadata.add_child_node(administrativeMetadata.ng_xml.root, :metadata_source)
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end
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administrativeMetadata.update_values({[:metadata_source] => format})
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administrativeMetadata.update_values({ [:metadata_source] => format })
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end
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# List of default workflows, used to provide choices at registration
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# @param wf [String] the name of the workflow, ex. 'digitizationWF'
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def default_workflow=(wf)
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fail ArgumentError, 'Must have a valid workflow for default' if wf.blank?
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+
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xml = administrativeMetadata.ng_xml
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administrativeMetadata.ng_xml_will_change!
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nodes = xml.search('//registration/workflow')
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def agreement=(val)
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fail ArgumentError, 'agreement must have a valid druid' if val.blank?
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self.agreement_object = Dor.find val.to_s, :cast => true
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end
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end
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# frozen_string_literal: true
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module Dor
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module Embargoable
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extend ActiveSupport::Concern
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@@ -68,6 +70,7 @@ module Dor
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if new_date.past?
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raise ArgumentError, 'You cannot set the embargo date to a past date.'
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end
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updated = false
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rightsMetadata.ng_xml.search('//embargoReleaseDate').each do |node|
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node.content = new_date.beginning_of_day.utc.xmlschema
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rightsMetadata.ng_xml_will_change!
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rightsMetadata.save
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raise 'No release date in rights metadata, cannot proceed!' unless updated
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embargoMetadata.ng_xml.xpath('//releaseDate').each do |node|
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node.content = new_date.beginning_of_day.utc.xmlschema
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end
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@@ -1,3 +1,5 @@
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# frozen_string_literal: true
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module Dor
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module Governable
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extend ActiveSupport::Concern
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@@ -16,13 +18,14 @@ module Dor
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# and APO, or if the APO does not have a default_lane
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# @return [String] the lane id
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def default_workflow_lane
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return 'default' if admin_policy_object.nil?
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return 'default' if admin_policy_object.nil? # TODO: log warning?
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admin_md = admin_policy_object.datastreams['administrativeMetadata']
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return 'default' unless admin_md.respond_to?(:default_workflow_lane) # Some APOs don't have this datastream
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lane = admin_md.default_workflow_lane
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return 'default' if lane.blank?
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lane
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end
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@@ -81,8 +84,10 @@ module Dor
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def rights
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return nil unless self.respond_to? :rightsMetadata
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return nil if rightsMetadata.nil?
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+
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xml = rightsMetadata.ng_xml
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-
return nil if xml.search('//rightsMetadata').length != 1
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return nil if xml.search('//rightsMetadata').length != 1 # ORLY?
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if xml.search('//rightsMetadata/access[@type=\'read\']/machine/group').length == 1
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'Stanford'
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elsif xml.search('//rightsMetadata/access[@type=\'read\']/machine/world').length == 1
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@@ -1,10 +1,12 @@
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+
# frozen_string_literal: true
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+
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module Dor
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module Identifiable
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extend ActiveSupport::Concern
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6
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# ids for previous and current catkeys
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-
CATKEY_TYPE_ID = 'catkey'
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-
PREVIOUS_CATKEY_TYPE_ID = 'previous_catkey'
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+
CATKEY_TYPE_ID = 'catkey'
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PREVIOUS_CATKEY_TYPE_ID = 'previous_catkey'
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included do
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has_metadata :name => 'DC', :type => SimpleDublinCoreDs, :label => 'Dublin Core Record for self object'
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@@ -22,6 +24,7 @@ module Dor
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# than the default Fedora sequence
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def assign_pid(_obj)
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return Dor::SuriService.mint_id if Dor::Config.suri.mint_ids
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+
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super
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end
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end
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@@ -33,7 +36,7 @@ module Dor
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# helper method to get just the content type tag
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def content_type_tag
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-
content_tag = tags.select {|tag| tag.include?('Process : Content Type')}
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+
content_tag = tags.select { |tag| tag.include?('Process : Content Type') }
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content_tag.size == 1 ? content_tag[0].split(':').last.strip : ''
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end
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@@ -62,7 +65,6 @@ module Dor
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# @param [String] catkey the new source identifier
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# @return [String] same value, as per Ruby assignment convention
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def catkey=(val)
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-
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if val != catkey && !catkey.blank? # if there was already a catkey in the record, store that in the "previous" spot (assuming there is no change)
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identityMetadata.add_otherId("#{PREVIOUS_CATKEY_TYPE_ID}:#{catkey}")
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end
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@@ -70,9 +72,9 @@ module Dor
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if val.blank? # if we are setting the catkey to blank, remove the node from XML
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remove_other_Id(CATKEY_TYPE_ID)
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elsif catkey.blank? # if there is no current catkey, then add it
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add_other_Id(CATKEY_TYPE_ID,val)
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-
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-
update_other_Id(CATKEY_TYPE_ID,val)
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+
add_other_Id(CATKEY_TYPE_ID, val)
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+
else # if there is a current catkey, update the current catkey to the new value
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+
update_other_Id(CATKEY_TYPE_ID, val)
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end
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val
|
@@ -88,29 +90,30 @@ module Dor
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88
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if identityMetadata.otherId(type).length > 0
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raise 'There is an existing entry for ' + type + ', consider using update_other_Id().'
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end
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+
|
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identityMetadata.add_otherId(type + ':' + val)
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end
|
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96
|
|
94
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def update_other_Id(type, new_val, val = nil)
|
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identityMetadata.ng_xml.search('//otherId[@name=\'' + type + '\']')
|
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-
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-
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-
|
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-
|
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+
.select { |node| val.nil? || node.content == val }
|
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|
+
.each { identityMetadata.ng_xml_will_change! }
|
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|
+
.each { |node| node.content = new_val }
|
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|
+
.any?
|
100
103
|
end
|
101
104
|
|
102
105
|
def remove_other_Id(type, val = nil)
|
103
106
|
identityMetadata.ng_xml.search('//otherId[@name=\'' + type + '\']')
|
104
|
-
|
105
|
-
|
106
|
-
|
107
|
-
|
107
|
+
.select { |node| val.nil? || node.content == val }
|
108
|
+
.each { identityMetadata.ng_xml_will_change! }
|
109
|
+
.each(&:remove)
|
110
|
+
.any?
|
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111
|
end
|
109
112
|
|
110
113
|
# turns a tag string into an array with one element per tag part.
|
111
114
|
# split on ":", disregard leading and trailing whitespace on tokens.
|
112
115
|
def split_tag_to_arr(tag_str)
|
113
|
-
tag_str.split(':').map {|str| str.strip}
|
116
|
+
tag_str.split(':').map { |str| str.strip }
|
114
117
|
end
|
115
118
|
|
116
119
|
# turn a tag array back into a tag string with a standard format
|
@@ -136,6 +139,7 @@ module Dor
|
|
136
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|
if dupe_existing_tag
|
137
140
|
raise "An existing tag (#{dupe_existing_tag}) is the same, consider using update_tag?"
|
138
141
|
end
|
142
|
+
|
139
143
|
normalized_tag
|
140
144
|
end
|
141
145
|
|
@@ -147,9 +151,10 @@ module Dor
|
|
147
151
|
if tag_arr.length < 2
|
148
152
|
raise ArgumentError, "Invalid tag structure: tag '#{tag_str}' must have at least 2 elements"
|
149
153
|
end
|
150
|
-
if tag_arr.detect {|str| str.empty?}
|
154
|
+
if tag_arr.detect { |str| str.empty? }
|
151
155
|
raise ArgumentError, "Invalid tag structure: tag '#{tag_str}' contains empty elements"
|
152
156
|
end
|
157
|
+
|
153
158
|
tag_arr
|
154
159
|
end
|
155
160
|
|
@@ -164,25 +169,19 @@ module Dor
|
|
164
169
|
def remove_tag(tag)
|
165
170
|
normtag = normalize_tag(tag)
|
166
171
|
identityMetadata.ng_xml.search('//tag')
|
167
|
-
|
168
|
-
|
169
|
-
|
170
|
-
|
172
|
+
.select { |node| normalize_tag(node.content) == normtag }
|
173
|
+
.each { identityMetadata.ng_xml_will_change! }
|
174
|
+
.each(&:remove)
|
175
|
+
.any?
|
171
176
|
end
|
172
177
|
|
173
178
|
def update_tag(old_tag, new_tag)
|
174
179
|
normtag = normalize_tag(old_tag)
|
175
180
|
identityMetadata.ng_xml.search('//tag')
|
176
|
-
|
177
|
-
|
178
|
-
|
179
|
-
|
180
|
-
end
|
181
|
-
|
182
|
-
def get_related_obj_display_title(related_obj, default_title)
|
183
|
-
return default_title unless related_obj
|
184
|
-
|
185
|
-
related_obj.full_title || default_title
|
181
|
+
.select { |node| normalize_tag(node.content) == normtag }
|
182
|
+
.each { identityMetadata.ng_xml_will_change! }
|
183
|
+
.each { |node| node.content = normalize_tag(new_tag) }
|
184
|
+
.any?
|
186
185
|
end
|
187
186
|
|
188
187
|
# a regex that can be used to identify the last part of a druid (e.g. oo000oo0001)
|
@@ -199,9 +198,9 @@ module Dor
|
|
199
198
|
|
200
199
|
# Since purl does not use the druid: prefix but much of dor does, use this function to strip the druid: if needed
|
201
200
|
# @return [String] the druid sans the druid: or if there was no druid: prefix, the entire string you passed
|
202
|
-
def remove_druid_prefix(druid=id)
|
203
|
-
result=druid.match(/#{pid_regex}/)
|
204
|
-
result.nil? ? druid : result[0]
|
201
|
+
def remove_druid_prefix(druid = id)
|
202
|
+
result = druid.match(/#{pid_regex}/)
|
203
|
+
result.nil? ? druid : result[0] # if no matches, return the string passed in, otherwise return the match
|
205
204
|
end
|
206
205
|
|
207
206
|
# Override ActiveFedora::Core#adapt_to_cmodel (used with associations, among other places) to
|
@@ -1,3 +1,5 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
1
3
|
require 'fileutils'
|
2
4
|
require 'uri'
|
3
5
|
|
@@ -9,13 +11,14 @@ module Dor
|
|
9
11
|
has_metadata :name => 'contentMetadata', :type => Dor::ContentMetadataDS, :label => 'Content Metadata', :control_group => 'M'
|
10
12
|
end
|
11
13
|
|
12
|
-
DIFF_FILENAME = 'cm_inv_diff'
|
14
|
+
DIFF_FILENAME = 'cm_inv_diff'
|
13
15
|
|
14
16
|
# Deletes all cm_inv_diff files in the workspace for the Item
|
15
17
|
def clear_diff_cache
|
16
18
|
if Dor::Config.stacks.local_workspace_root.nil?
|
17
19
|
raise ArgumentError, 'Missing Dor::Config.stacks.local_workspace_root'
|
18
20
|
end
|
21
|
+
|
19
22
|
druid = DruidTools::Druid.new(pid, Dor::Config.stacks.local_workspace_root)
|
20
23
|
diff_pattern = File.join(druid.temp_dir, DIFF_FILENAME + '.*')
|
21
24
|
FileUtils.rm_f Dir.glob(diff_pattern)
|