dcm_dict 0.1.0

data/spec/dcm_dict/refine/string_refine_spec.rb

@@ -0,0 +1,87 @@
+#
+#  Copyright (C) 2014  Enrico Rivarola
+#
+#  This file is part of DcmDict gem (dcm_dict).
+#
+#  DcmDict is free software: you can redistribute it and/or modify
+#  it under the terms of the GNU General Public License as published by
+#  the Free Software Foundation, either version 3 of the License, or
+#  (at your option) any later version.
+#
+#  DcmDict is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public License
+#  along with DcmDict.  If not, see <http://www.gnu.org/licenses/>.
+#
+#  This software has neither been tested nor approved for clinical use
+#  or for incorporation in a medical device.
+#  It is the redistributor's or user's responsibility to comply with any
+#  applicable local, state, national or international regulations.
+#
+require 'spec_helper'
+
+describe "String refinement" do
+  using DcmDict::Refine::StringRefine
+  describe "should permit access to single data element dictionary information" do
+
+    include_examples "refinement for standard tag",
+                     ["(0010,1005)", "Patient's Birth Name", "PatientBirthName", "(0010,1005)", "00101005",
+                      '(60XX,0040)', "Overlay Type", "OverlayType", "(6022,0040)", "60220040",
+                      '(0028,1200)', "Gray Lookup Table Data", "GrayLookupTableData", "(0028,1200)", "00281200",
+                      '(0014,3050)', "Dark Current Counts", "DarkCurrentCounts", "(0014,3050)", "00143050",
+                     ],
+                     Proc.new{|tag| tag.inspect}
+
+
+    multi_str_data = { '(6046,0040)' => {
+                         tag_multiple: true,
+                         tag_name: "Overlay Type",
+                         tag_keyword: "OverlayType",
+                         tag_key: "OverlayType",
+                         tag_vr: [:CS], tag_vm: ["1"],
+                         tag: [0x6046, 0x0040], tag_ary: [0x6046, 0x0040],
+                         tag_ps: "(60XX,0040)",
+                         tag_sym: :overlay_type,
+                         tag_ndm: "60460040",
+                         tag_str: "(6046,0040)",
+                         tag_group: 0x6046,
+                         tag_element: 0x0040 } }
+
+    include_examples "refinement for multiple tag",
+                     multi_str_data,
+                     Proc.new {|tag| tag.inspect}
+
+  end
+
+
+  describe "should permit access to single data uid dictionary information" do
+    describe "for regular uids" do
+      [
+        '1.2.840.10008.1.1', "Verification SOP Class",
+        '1.2.840.10008.1.2.1', "Explicit VR Little Endian",
+        '1.2.840.10008.5.1.4.1.2.1.1', "Patient Root Query/Retrieve Information Model - FIND",
+        '1.2.3.4.5.6'
+      ].each do |uid|
+        describe "as #{uid.inspect}" do
+          obj = DcmDict::Dictionary::TheUidDictionary.record_at(uid)
+          DcmDict::Dictionary::UidMethod.each do |method|
+            expr = "#{uid.inspect}.#{method.to_s}"
+            it "with #{expr} > #{obj.send(method).inspect}" do
+              value = eval(expr)
+              expect(value).to eq(obj.send(method))
+            end
+          end
+        end
+      end
+    end
+  end
+
+  include_examples "Raise exception for wrong input",
+                   [ '123g123m' ],
+                   [ 'this string is not an uid' ],
+                   Proc.new {|tag| tag.inspect}
+
+end

data/spec/dcm_dict/refine/symbol_refine_spec.rb

@@ -0,0 +1,41 @@
+#
+#  Copyright (C) 2014  Enrico Rivarola
+#
+#  This file is part of DcmDict gem (dcm_dict).
+#
+#  DcmDict is free software: you can redistribute it and/or modify
+#  it under the terms of the GNU General Public License as published by
+#  the Free Software Foundation, either version 3 of the License, or
+#  (at your option) any later version.
+#
+#  DcmDict is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public License
+#  along with DcmDict.  If not, see <http://www.gnu.org/licenses/>.
+#
+#  This software has neither been tested nor approved for clinical use
+#  or for incorporation in a medical device.
+#  It is the redistributor's or user's responsibility to comply with any
+#  applicable local, state, national or international regulations.
+#
+require 'spec_helper'
+
+describe "Symbol refinement" do
+  using DcmDict::Refine::SymbolRefine
+  describe "should permit access to single data element dictionary information" do
+
+    include_examples "refinement for standard tag",
+                     [:patient_birth_name, :gray_lookup_table_data, :dark_current_counts],
+                     Proc.new{|tag| tag.inspect}
+
+  end
+
+  include_examples "Raise exception for wrong input",
+                   [ :wrong_data_element ],
+                   [],
+                   Proc.new {|tag| tag.inspect}
+
+end

data/spec/dcm_dict/rubies/rb_ext_spec.rb

@@ -0,0 +1,46 @@
+#
+#  Copyright (C) 2014  Enrico Rivarola
+#
+#  This file is part of DcmDict gem (dcm_dict).
+#
+#  DcmDict is free software: you can redistribute it and/or modify
+#  it under the terms of the GNU General Public License as published by
+#  the Free Software Foundation, either version 3 of the License, or
+#  (at your option) any later version.
+#
+#  DcmDict is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public License
+#  along with DcmDict.  If not, see <http://www.gnu.org/licenses/>.
+#
+#  This software has neither been tested nor approved for clinical use
+#  or for incorporation in a medical device.
+#  It is the redistributor's or user's responsibility to comply with any
+#  applicable local, state, national or international regulations.
+#
+require 'spec_helper'
+
+describe "Rubies dedicate extension" do
+  it "should check for Fixnum::bit_length method" do
+    {(-2**12-1) => 13,
+     (-2**12)   => 12,
+     (-2**12+1) => 12,
+     -0x101    => 9,
+     -0x100    => 8,
+     -0xff     => 8,
+     -2        => 1,
+     -1        => 0,
+     0         => 0,
+     1         => 1,
+     0xff      => 8,
+     0x100     => 9,
+     (2**12-1) => 12,
+     (2**12)   => 13,
+     (2**12+1) => 13}.each do |num, expected_bit_length|
+      expect(num.bit_length).to eq(expected_bit_length)
+    end
+  end
+end

data/spec/dcm_dict/source_data/data_elements_data_spec.rb

@@ -0,0 +1,40 @@
+#
+#  Copyright (C) 2014  Enrico Rivarola
+#
+#  This file is part of DcmDict gem (dcm_dict).
+#
+#  DcmDict is free software: you can redistribute it and/or modify
+#  it under the terms of the GNU General Public License as published by
+#  the Free Software Foundation, either version 3 of the License, or
+#  (at your option) any later version.
+#
+#  DcmDict is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public License
+#  along with DcmDict.  If not, see <http://www.gnu.org/licenses/>.
+#
+#  This software has neither been tested nor approved for clinical use
+#  or for incorporation in a medical device.
+#  It is the redistributor's or user's responsibility to comply with any
+#  applicable local, state, national or international regulations.
+#
+require 'spec_helper'
+require 'set'
+
+describe "DcmDict::SourceData::DataElementsData" do
+  it "All record must have valid field" do
+    supported_keys = [:tag_ps, :tag_name, :tag_key, :tag_vr, :tag_vm, :tag_str, :tag_sym, :tag_ndm, :tag_ary, :tag_multiple, :tag_note].to_set
+    not_empty_keys = supported_keys-[:tag_multiple, :tag_note]
+    DcmDict::SourceData::DataElementsData.each do |record|
+      supported_keys.each do |key|
+        expect(record).to have_key(key)
+      end
+      not_empty_keys.each do |key|
+        expect(record[key].empty?).to be_falsy, "Error on check #{key} not empty for #{record[:tag_ps]} - '#{record[key].inspect}'"
+      end
+    end
+  end
+end

data/spec/dcm_dict/source_data/detached_data_spec.rb

@@ -0,0 +1,55 @@
+#
+#  Copyright (C) 2014  Enrico Rivarola
+#
+#  This file is part of DcmDict gem (dcm_dict).
+#
+#  DcmDict is free software: you can redistribute it and/or modify
+#  it under the terms of the GNU General Public License as published by
+#  the Free Software Foundation, either version 3 of the License, or
+#  (at your option) any later version.
+#
+#  DcmDict is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public License
+#  along with DcmDict.  If not, see <http://www.gnu.org/licenses/>.
+#
+#  This software has neither been tested nor approved for clinical use
+#  or for incorporation in a medical device.
+#  It is the redistributor's or user's responsibility to comply with any
+#  applicable local, state, national or international regulations.
+#
+require 'spec_helper'
+require 'data_element_sample_spec_helper'
+
+describe "DcmDict::SourceData::DetachedData" do
+
+  DataElementSampleSpecHelper.unknown_group_length_sample.each do |tag, expected_data|
+    it "create data for 'group length' record for tag=#{tag.inspect}" do
+      data = DcmDict::SourceData::DetachedData.make_group_length_data(tag)
+      expected_data.each do |key, val|
+        expect(data[key]).to eq(val)
+      end
+    end
+  end
+
+  DataElementSampleSpecHelper.private_creator_sample.each do |tag, expected_data|
+    it "create data for 'private creator' record for tag=#{tag.inspect}" do
+      data = DcmDict::SourceData::DetachedData.make_private_creator_data(tag)
+      expected_data.each do |key, val|
+        expect(data[key]).to eq(val)
+      end
+    end
+  end
+
+  DataElementSampleSpecHelper.unknown_sample.each do |tag, expected_data|
+    it "create data for 'unknown tag' record for tag=#{tag.inspect}" do
+      data = DcmDict::SourceData::DetachedData.make_unknown_data(tag)
+      expected_data.each do |key, val|
+        expect(data[key]).to eq(val)
+      end
+    end
+  end
+end

data/spec/dcm_dict/source_data/uid_values_data_spec.rb

@@ -0,0 +1,37 @@
+#
+#  Copyright (C) 2014  Enrico Rivarola
+#
+#  This file is part of DcmDict gem (dcm_dict).
+#
+#  DcmDict is free software: you can redistribute it and/or modify
+#  it under the terms of the GNU General Public License as published by
+#  the Free Software Foundation, either version 3 of the License, or
+#  (at your option) any later version.
+#
+#  DcmDict is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public License
+#  along with DcmDict.  If not, see <http://www.gnu.org/licenses/>.
+#
+#  This software has neither been tested nor approved for clinical use
+#  or for incorporation in a medical device.
+#  It is the redistributor's or user's responsibility to comply with any
+#  applicable local, state, national or international regulations.
+#
+require 'spec_helper'
+
+describe "DcmDict::SourceData::UidValuesData" do
+  it "All record must have valid field" do
+    supported_keys = [:uid_value, :uid_name, :uid_type]
+    DcmDict::SourceData::UidValuesData.each do |record|
+      supported_keys.each do |key|
+        expect(record).to have_key(key)
+        expect(record.nil_or_empty?).to be_falsy
+      end
+    end
+  end
+
+end

data/spec/dcm_dict/version_spec.rb

@@ -0,0 +1,30 @@
+#
+#  Copyright (C) 2014  Enrico Rivarola
+#
+#  This file is part of DcmDict gem (dcm_dict).
+#
+#  DcmDict is free software: you can redistribute it and/or modify
+#  it under the terms of the GNU General Public License as published by
+#  the Free Software Foundation, either version 3 of the License, or
+#  (at your option) any later version.
+#
+#  DcmDict is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public License
+#  along with DcmDict.  If not, see <http://www.gnu.org/licenses/>.
+#
+#  This software has neither been tested nor approved for clinical use
+#  or for incorporation in a medical device.
+#  It is the redistributor's or user's responsibility to comply with any
+#  applicable local, state, national or international regulations.
+#
+require 'spec_helper'
+
+describe "DcmDict version" do
+  it "may be defined" do
+    expect(DcmDict::VERSION).not_to be_nil
+  end
+end

data/spec/dcm_dict/xml/tag_field_data_spec.rb

@@ -0,0 +1,62 @@
+#
+#  Copyright (C) 2014  Enrico Rivarola
+#
+#  This file is part of DcmDict gem (dcm_dict).
+#
+#  DcmDict is free software: you can redistribute it and/or modify
+#  it under the terms of the GNU General Public License as published by
+#  the Free Software Foundation, either version 3 of the License, or
+#  (at your option) any later version.
+#
+#  DcmDict is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public License
+#  along with DcmDict.  If not, see <http://www.gnu.org/licenses/>.
+#
+#  This software has neither been tested nor approved for clinical use
+#  or for incorporation in a medical device.
+#  It is the redistributor's or user's responsibility to comply with any
+#  applicable local, state, national or international regulations.
+#
+require 'spec_helper'
+require 'xml_sample_spec_helper'
+
+
+
+describe "XML management for Data Element" do
+
+  RSpec.shared_examples "XML management for Data Element" do |xml_mod, desc|
+    describe "should extract data from single node set data (#{desc})" do
+      XmlSampleSpecHelper.xml_tag_single_set.each do |xml_string, expected_data|
+        xml_data = xml_mod.extract_data_element_field_from_xml_tr(xml_string)
+        describe "for '#{expected_data[:tag_name]}'" do
+          expected_data.each do |key, expected_value|
+            it "with key #{key.inspect}" do
+              expect(xml_data[key]).to eq(expected_value)
+            end
+          end
+          it "from XML doc" do
+            doc = xml_mod.create_xml_doc(xml_string)
+            data = {}
+            xml_mod.each_tr_set(doc, '//xmlns:tr') do |trset|
+              data = xml_mod.extract_data_element_field_from_tr_set(trset)
+            end
+            expect(data).to eq(expected_data)
+          end
+        end
+      end
+    end
+  end
+
+  if DcmDict::XML.nokogiri_enable?
+    include_examples "XML management for Data Element", DcmDict::XML::NokogiriTool, "with Nokogiri"
+  end
+
+  include_examples "XML management for Data Element", DcmDict::XML::RexmlTool, "with REXML"
+
+  include_examples "XML management for Data Element", DcmDict::XML::XmlTool, "with general XML module"
+
+end

data/spec/dcm_dict/xml/uid_field_data_spec.rb

@@ -0,0 +1,60 @@
+#
+#  Copyright (C) 2014  Enrico Rivarola
+#
+#  This file is part of DcmDict gem (dcm_dict).
+#
+#  DcmDict is free software: you can redistribute it and/or modify
+#  it under the terms of the GNU General Public License as published by
+#  the Free Software Foundation, either version 3 of the License, or
+#  (at your option) any later version.
+#
+#  DcmDict is distributed in the hope that it will be useful,
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#  GNU General Public License for more details.
+#
+#  You should have received a copy of the GNU General Public License
+#  along with DcmDict.  If not, see <http://www.gnu.org/licenses/>.
+#
+#  This software has neither been tested nor approved for clinical use
+#  or for incorporation in a medical device.
+#  It is the redistributor's or user's responsibility to comply with any
+#  applicable local, state, national or international regulations.
+#
+require 'spec_helper'
+require 'xml_sample_spec_helper'
+
+describe "XML management for UID" do
+
+  RSpec.shared_examples "XML management for UID" do |xml_mod, desc|
+    describe "should extract data from single node set data (#{desc})" do
+      XmlSampleSpecHelper.xml_uid_set.each do |xml_string, expected_data|
+        xml_data = xml_mod.extract_uid_field_from_xml_tr(xml_string)
+        describe "for '#{expected_data[:uid_name]}'" do
+          expected_data.each do |key, expected_value|
+            it "with key #{key.inspect}" do
+              expect(xml_data[key]).to eq(expected_value)
+            end
+          end
+          it "from XML doc" do
+            doc = xml_mod.create_xml_doc(xml_string)
+            data = {}
+            xml_mod.each_tr_set(doc, '//xmlns:tr') do |trset|
+              data = xml_mod.extract_uid_field_from_tr_set(trset)
+            end
+            expect(data).to eq(expected_data)
+          end
+        end
+      end
+    end
+  end
+
+  if DcmDict::XML.nokogiri_enable?
+    include_examples "XML management for UID", DcmDict::XML::NokogiriTool, "with Nokogiri"
+  end
+
+  include_examples "XML management for UID", DcmDict::XML::RexmlTool, "with REXML"
+
+  include_examples "XML management for UID", DcmDict::XML::XmlTool, "with general XML module"
+
+end