datasketches 0.2.3 → 0.2.6
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- checksums.yaml +4 -4
- data/CHANGELOG.md +12 -0
- data/README.md +8 -8
- data/ext/datasketches/kll_wrapper.cpp +7 -3
- data/ext/datasketches/theta_wrapper.cpp +20 -4
- data/lib/datasketches/version.rb +1 -1
- data/vendor/datasketches-cpp/CMakeLists.txt +25 -5
- data/vendor/datasketches-cpp/MANIFEST.in +3 -0
- data/vendor/datasketches-cpp/NOTICE +6 -5
- data/vendor/datasketches-cpp/README.md +76 -9
- data/vendor/datasketches-cpp/cmake/DataSketchesConfig.cmake.in +10 -0
- data/vendor/datasketches-cpp/common/CMakeLists.txt +18 -13
- data/vendor/datasketches-cpp/common/include/binomial_bounds.hpp +1 -0
- data/vendor/datasketches-cpp/common/include/common_defs.hpp +14 -0
- data/vendor/datasketches-cpp/{kll → common}/include/kolmogorov_smirnov.hpp +5 -3
- data/vendor/datasketches-cpp/{kll → common}/include/kolmogorov_smirnov_impl.hpp +13 -16
- data/vendor/datasketches-cpp/common/include/quantile_sketch_sorted_view.hpp +121 -0
- data/vendor/datasketches-cpp/common/include/quantile_sketch_sorted_view_impl.hpp +91 -0
- data/vendor/datasketches-cpp/common/test/test_type.hpp +2 -0
- data/vendor/datasketches-cpp/cpc/CMakeLists.txt +15 -35
- data/vendor/datasketches-cpp/cpc/include/cpc_compressor_impl.hpp +3 -1
- data/vendor/datasketches-cpp/cpc/include/cpc_confidence.hpp +1 -0
- data/vendor/datasketches-cpp/cpc/include/cpc_sketch_impl.hpp +5 -3
- data/vendor/datasketches-cpp/cpc/include/cpc_union_impl.hpp +10 -6
- data/vendor/datasketches-cpp/cpc/test/cpc_sketch_allocation_test.cpp +17 -0
- data/vendor/datasketches-cpp/cpc/test/cpc_sketch_test.cpp +1 -0
- data/vendor/datasketches-cpp/cpc/test/cpc_union_test.cpp +2 -0
- data/vendor/datasketches-cpp/fi/CMakeLists.txt +5 -15
- data/vendor/datasketches-cpp/fi/include/frequent_items_sketch.hpp +37 -5
- data/vendor/datasketches-cpp/fi/include/frequent_items_sketch_impl.hpp +29 -11
- data/vendor/datasketches-cpp/fi/test/frequent_items_sketch_custom_type_test.cpp +2 -1
- data/vendor/datasketches-cpp/fi/test/frequent_items_sketch_test.cpp +1 -0
- data/vendor/datasketches-cpp/hll/CMakeLists.txt +33 -56
- data/vendor/datasketches-cpp/hll/include/AuxHashMap-internal.hpp +2 -0
- data/vendor/datasketches-cpp/hll/include/CompositeInterpolationXTable-internal.hpp +1 -0
- data/vendor/datasketches-cpp/hll/include/CouponHashSet-internal.hpp +2 -2
- data/vendor/datasketches-cpp/hll/include/CouponList-internal.hpp +1 -0
- data/vendor/datasketches-cpp/hll/include/HllSketch-internal.hpp +6 -4
- data/vendor/datasketches-cpp/hll/include/HllSketchImpl-internal.hpp +2 -0
- data/vendor/datasketches-cpp/hll/include/HllSketchImplFactory.hpp +2 -0
- data/vendor/datasketches-cpp/hll/test/AuxHashMapTest.cpp +1 -0
- data/vendor/datasketches-cpp/hll/test/CouponHashSetTest.cpp +1 -0
- data/vendor/datasketches-cpp/hll/test/CouponListTest.cpp +2 -0
- data/vendor/datasketches-cpp/hll/test/HllArrayTest.cpp +1 -0
- data/vendor/datasketches-cpp/hll/test/HllSketchTest.cpp +59 -0
- data/vendor/datasketches-cpp/hll/test/HllUnionTest.cpp +2 -0
- data/vendor/datasketches-cpp/hll/test/TablesTest.cpp +1 -0
- data/vendor/datasketches-cpp/kll/CMakeLists.txt +5 -19
- data/vendor/datasketches-cpp/kll/include/kll_helper.hpp +0 -4
- data/vendor/datasketches-cpp/kll/include/kll_helper_impl.hpp +5 -2
- data/vendor/datasketches-cpp/kll/include/kll_sketch.hpp +108 -41
- data/vendor/datasketches-cpp/kll/include/kll_sketch_impl.hpp +150 -132
- data/vendor/datasketches-cpp/kll/test/kll_sketch_test.cpp +165 -31
- data/vendor/datasketches-cpp/kll/test/kolmogorov_smirnov_test.cpp +1 -1
- data/vendor/datasketches-cpp/pyproject.toml +1 -1
- data/vendor/datasketches-cpp/python/CMakeLists.txt +8 -1
- data/vendor/datasketches-cpp/python/README.md +13 -9
- data/vendor/datasketches-cpp/python/src/datasketches.cpp +4 -0
- data/vendor/datasketches-cpp/python/src/fi_wrapper.cpp +6 -1
- data/vendor/datasketches-cpp/python/src/kll_wrapper.cpp +48 -13
- data/vendor/datasketches-cpp/python/src/ks_wrapper.cpp +68 -0
- data/vendor/datasketches-cpp/python/src/quantiles_wrapper.cpp +240 -0
- data/vendor/datasketches-cpp/python/src/req_wrapper.cpp +9 -2
- data/vendor/datasketches-cpp/python/src/vector_of_kll.cpp +1 -0
- data/vendor/datasketches-cpp/python/tests/kll_test.py +10 -4
- data/vendor/datasketches-cpp/python/tests/quantiles_test.py +126 -0
- data/vendor/datasketches-cpp/quantiles/CMakeLists.txt +42 -0
- data/vendor/datasketches-cpp/quantiles/include/quantiles_sketch.hpp +656 -0
- data/vendor/datasketches-cpp/quantiles/include/quantiles_sketch_impl.hpp +1373 -0
- data/vendor/datasketches-cpp/quantiles/test/CMakeLists.txt +44 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n1000_v0.3.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n1000_v0.6.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n1000_v0.8.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n1000_v0.8.3.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n50_v0.3.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n50_v0.6.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n50_v0.8.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n50_v0.8.3.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/kolmogorov_smirnov_test.cpp +110 -0
- data/vendor/datasketches-cpp/quantiles/test/quantiles_compatibility_test.cpp +129 -0
- data/vendor/datasketches-cpp/quantiles/test/quantiles_sketch_test.cpp +975 -0
- data/vendor/datasketches-cpp/req/CMakeLists.txt +6 -21
- data/vendor/datasketches-cpp/req/include/req_common.hpp +0 -5
- data/vendor/datasketches-cpp/req/include/req_compactor.hpp +6 -0
- data/vendor/datasketches-cpp/req/include/req_compactor_impl.hpp +30 -2
- data/vendor/datasketches-cpp/req/include/req_sketch.hpp +73 -23
- data/vendor/datasketches-cpp/req/include/req_sketch_impl.hpp +95 -63
- data/vendor/datasketches-cpp/req/test/req_sketch_test.cpp +74 -3
- data/vendor/datasketches-cpp/sampling/CMakeLists.txt +5 -9
- data/vendor/datasketches-cpp/sampling/include/var_opt_sketch.hpp +44 -7
- data/vendor/datasketches-cpp/sampling/include/var_opt_sketch_impl.hpp +44 -33
- data/vendor/datasketches-cpp/sampling/include/var_opt_union.hpp +41 -6
- data/vendor/datasketches-cpp/sampling/include/var_opt_union_impl.hpp +33 -15
- data/vendor/datasketches-cpp/sampling/test/var_opt_allocation_test.cpp +2 -2
- data/vendor/datasketches-cpp/sampling/test/var_opt_sketch_test.cpp +1 -0
- data/vendor/datasketches-cpp/sampling/test/var_opt_union_test.cpp +1 -0
- data/vendor/datasketches-cpp/setup.py +1 -1
- data/vendor/datasketches-cpp/theta/CMakeLists.txt +26 -45
- data/vendor/datasketches-cpp/theta/include/bounds_on_ratios_in_sampled_sets.hpp +1 -0
- data/vendor/datasketches-cpp/theta/include/compact_theta_sketch_parser_impl.hpp +92 -23
- data/vendor/datasketches-cpp/theta/include/theta_helpers.hpp +15 -0
- data/vendor/datasketches-cpp/theta/include/theta_intersection_base_impl.hpp +7 -6
- data/vendor/datasketches-cpp/theta/include/theta_set_difference_base_impl.hpp +3 -2
- data/vendor/datasketches-cpp/theta/include/theta_sketch.hpp +32 -15
- data/vendor/datasketches-cpp/theta/include/theta_sketch_impl.hpp +150 -93
- data/vendor/datasketches-cpp/theta/include/theta_union.hpp +6 -1
- data/vendor/datasketches-cpp/theta/include/theta_union_base.hpp +3 -1
- data/vendor/datasketches-cpp/theta/include/theta_union_base_impl.hpp +9 -2
- data/vendor/datasketches-cpp/theta/include/theta_union_impl.hpp +8 -5
- data/vendor/datasketches-cpp/theta/include/theta_update_sketch_base.hpp +5 -4
- data/vendor/datasketches-cpp/theta/include/theta_update_sketch_base_impl.hpp +34 -9
- data/vendor/datasketches-cpp/theta/test/CMakeLists.txt +1 -0
- data/vendor/datasketches-cpp/theta/test/theta_a_not_b_test.cpp +2 -0
- data/vendor/datasketches-cpp/theta/test/theta_compact_empty_from_java_v1.sk +0 -0
- data/vendor/datasketches-cpp/theta/test/theta_compact_empty_from_java_v2.sk +0 -0
- data/vendor/datasketches-cpp/theta/test/theta_compact_estimation_from_java_v1.sk +0 -0
- data/vendor/datasketches-cpp/theta/test/theta_compact_estimation_from_java_v2.sk +0 -0
- data/vendor/datasketches-cpp/theta/test/theta_compact_exact_from_java.sk +0 -0
- data/vendor/datasketches-cpp/theta/test/theta_intersection_test.cpp +2 -0
- data/vendor/datasketches-cpp/theta/test/theta_setop_test.cpp +446 -0
- data/vendor/datasketches-cpp/theta/test/theta_sketch_test.cpp +429 -1
- data/vendor/datasketches-cpp/theta/test/theta_union_test.cpp +25 -11
- data/vendor/datasketches-cpp/tuple/CMakeLists.txt +18 -33
- data/vendor/datasketches-cpp/tuple/include/array_of_doubles_sketch.hpp +1 -1
- data/vendor/datasketches-cpp/tuple/include/array_of_doubles_sketch_impl.hpp +3 -3
- data/vendor/datasketches-cpp/tuple/include/array_of_doubles_union.hpp +1 -1
- data/vendor/datasketches-cpp/tuple/include/array_of_doubles_union_impl.hpp +3 -3
- data/vendor/datasketches-cpp/tuple/include/tuple_sketch.hpp +29 -9
- data/vendor/datasketches-cpp/tuple/include/tuple_sketch_impl.hpp +34 -14
- data/vendor/datasketches-cpp/tuple/include/tuple_union.hpp +6 -1
- data/vendor/datasketches-cpp/tuple/include/tuple_union_impl.hpp +8 -3
- data/vendor/datasketches-cpp/tuple/test/array_of_doubles_sketch_test.cpp +16 -0
- data/vendor/datasketches-cpp/tuple/test/tuple_a_not_b_test.cpp +1 -0
- data/vendor/datasketches-cpp/tuple/test/tuple_intersection_test.cpp +1 -0
- data/vendor/datasketches-cpp/tuple/test/tuple_sketch_test.cpp +46 -8
- data/vendor/datasketches-cpp/tuple/test/tuple_union_test.cpp +8 -0
- metadata +33 -12
- data/vendor/datasketches-cpp/kll/include/kll_quantile_calculator.hpp +0 -75
- data/vendor/datasketches-cpp/kll/include/kll_quantile_calculator_impl.hpp +0 -184
- data/vendor/datasketches-cpp/req/include/req_quantile_calculator.hpp +0 -69
- data/vendor/datasketches-cpp/req/include/req_quantile_calculator_impl.hpp +0 -60
- data/vendor/datasketches-cpp/theta/test/theta_update_empty_from_java.sk +0 -0
- data/vendor/datasketches-cpp/theta/test/theta_update_estimation_from_java.sk +0 -0
@@ -22,6 +22,7 @@
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#include <sstream>
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#include <vector>
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#include <stdexcept>
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#include "serde.hpp"
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#include "binomial_bounds.hpp"
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@@ -31,64 +32,72 @@
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namespace datasketches {
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template<typename A>
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bool
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bool base_theta_sketch_alloc<A>::is_estimation_mode() const {
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return get_theta64() < theta_constants::MAX_THETA && !is_empty();
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}
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template<typename A>
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double
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double base_theta_sketch_alloc<A>::get_theta() const {
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return static_cast<double>(get_theta64()) / theta_constants::MAX_THETA;
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}
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template<typename A>
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double
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double base_theta_sketch_alloc<A>::get_estimate() const {
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return get_num_retained() / get_theta();
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}
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template<typename A>
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double
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double base_theta_sketch_alloc<A>::get_lower_bound(uint8_t num_std_devs) const {
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if (!is_estimation_mode()) return get_num_retained();
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return binomial_bounds::get_lower_bound(get_num_retained(), get_theta(), num_std_devs);
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}
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template<typename A>
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double
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double base_theta_sketch_alloc<A>::get_upper_bound(uint8_t num_std_devs) const {
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if (!is_estimation_mode()) return get_num_retained();
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return binomial_bounds::get_upper_bound(get_num_retained(), get_theta(), num_std_devs);
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}
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template<typename A>
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string<A>
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string<A> base_theta_sketch_alloc<A>::to_string(bool print_details) const {
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// Using a temporary stream for implementation here does not comply with AllocatorAwareContainer requirements.
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// The stream does not support passing an allocator instance, and alternatives are complicated.
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std::ostringstream os;
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os << "### Theta sketch summary:" << std::endl;
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os << " num retained entries : " << get_num_retained() << std::endl;
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os << " seed hash : " << get_seed_hash() << std::endl;
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os << " empty? : " << (is_empty() ? "true" : "false") << std::endl;
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os << " ordered? : " << (is_ordered() ? "true" : "false") << std::endl;
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os << " estimation mode? : " << (is_estimation_mode() ? "true" : "false") << std::endl;
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os << " theta (fraction) : " << get_theta() << std::endl;
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os << " theta (raw 64-bit) : " << get_theta64() << std::endl;
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os << " num retained entries : " << this->get_num_retained() << std::endl;
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os << " seed hash : " << this->get_seed_hash() << std::endl;
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os << " empty? : " << (this->is_empty() ? "true" : "false") << std::endl;
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os << " ordered? : " << (this->is_ordered() ? "true" : "false") << std::endl;
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os << " estimation mode? : " << (this->is_estimation_mode() ? "true" : "false") << std::endl;
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os << " theta (fraction) : " << this->get_theta() << std::endl;
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os << " theta (raw 64-bit) : " << this->get_theta64() << std::endl;
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os << " estimate : " << this->get_estimate() << std::endl;
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os << " lower bound 95% conf : " << this->get_lower_bound(2) << std::endl;
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os << " upper bound 95% conf : " << this->get_upper_bound(2) << std::endl;
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print_specifics(os);
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os << "### End sketch summary" << std::endl;
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if (
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if (print_details) {
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print_items(os);
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}
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return string<A>(os.str().c_str(), this->get_allocator());
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}
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template<typename A>
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void theta_sketch_alloc<A>::print_items(std::ostringstream& os) const {
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os << "### Retained entries" << std::endl;
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for (const auto& hash: *this) {
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os << hash << std::endl;
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}
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os << "### End retained entries" << std::endl;
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}
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return os.str();
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}
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// update sketch
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template<typename A>
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update_theta_sketch_alloc<A>::update_theta_sketch_alloc(uint8_t lg_cur_size, uint8_t lg_nom_size, resize_factor rf,
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uint64_t theta, uint64_t seed, const A& allocator):
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table_(lg_cur_size, lg_nom_size, rf, theta, seed, allocator)
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float p, uint64_t theta, uint64_t seed, const A& allocator):
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table_(lg_cur_size, lg_nom_size, rf, p, theta, seed, allocator)
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{}
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template<typename A>
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template<typename A>
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bool update_theta_sketch_alloc<A>::is_ordered() const {
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return false;
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return table_.num_entries_ > 1 ? false : true;
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}
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template<typename A>
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uint64_t update_theta_sketch_alloc<A>::get_theta64() const {
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return table_.theta_;
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return is_empty() ? theta_constants::MAX_THETA : table_.theta_;
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}
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template<typename A>
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@@ -202,6 +211,11 @@ void update_theta_sketch_alloc<A>::trim() {
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table_.trim();
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}
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template<typename A>
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void update_theta_sketch_alloc<A>::reset() {
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table_.reset();
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}
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template<typename A>
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auto update_theta_sketch_alloc<A>::begin() -> iterator {
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return iterator(table_.entries_, 1 << table_.lg_cur_size_, 0);
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@@ -228,7 +242,7 @@ compact_theta_sketch_alloc<A> update_theta_sketch_alloc<A>::compact(bool ordered
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}
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template<typename A>
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void update_theta_sketch_alloc<A>::print_specifics(
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void update_theta_sketch_alloc<A>::print_specifics(std::ostringstream& os) const {
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os << " lg nominal size : " << static_cast<int>(table_.lg_nom_size_) << std::endl;
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os << " lg current size : " << static_cast<int>(table_.lg_cur_size_) << std::endl;
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os << " resize factor : " << (1 << table_.rf_) << std::endl;
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@@ -241,7 +255,7 @@ update_theta_sketch_alloc<A>::builder::builder(const A& allocator): theta_base_b
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template<typename A>
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update_theta_sketch_alloc<A> update_theta_sketch_alloc<A>::builder::build() const {
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return update_theta_sketch_alloc(this->starting_lg_size(), this->lg_k_, this->rf_, this->starting_theta(), this->seed_, this->allocator_);
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return update_theta_sketch_alloc(this->starting_lg_size(), this->lg_k_, this->rf_, this->p_, this->starting_theta(), this->seed_, this->allocator_);
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}
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// compact sketch
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@@ -255,16 +269,18 @@ seed_hash_(other.get_seed_hash()),
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theta_(other.get_theta64()),
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entries_(other.get_allocator())
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{
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if (!other.is_empty()) {
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entries_.reserve(other.get_num_retained());
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std::copy(other.begin(), other.end(), std::back_inserter(entries_));
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if (ordered && !other.is_ordered()) std::sort(entries_.begin(), entries_.end());
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}
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}
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template<typename A>
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compact_theta_sketch_alloc<A>::compact_theta_sketch_alloc(bool is_empty, bool is_ordered, uint16_t seed_hash, uint64_t theta,
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is_empty_(is_empty),
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is_ordered_(is_ordered),
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is_ordered_(is_ordered || (entries.size() <= 1ULL)),
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theta_(theta),
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}
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template<typename A>
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void compact_theta_sketch_alloc<A>::print_specifics(
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void compact_theta_sketch_alloc<A>::print_specifics(std::ostringstream&) const {}
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template<typename A>
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void compact_theta_sketch_alloc<A>::serialize(std::ostream& os) const {
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@@ -400,78 +416,107 @@ compact_theta_sketch_alloc<A> compact_theta_sketch_alloc<A>::deserialize(std::is
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const auto preamble_longs = read<uint8_t>(is);
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const auto serial_version = read<uint8_t>(is);
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const auto type = read<uint8_t>(is);
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switch (serial_version) {
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read<uint16_t>(is); // unused
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const auto flags_byte = read<uint8_t>(is);
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const auto seed_hash = read<uint16_t>(is);
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checker<true>::check_sketch_type(type, SKETCH_TYPE);
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checker<true>::check_serial_version(serial_version, SERIAL_VERSION);
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const bool is_empty = flags_byte & (1 << flags::IS_EMPTY);
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if (!is_empty) checker<true>::check_seed_hash(seed_hash, compute_seed_hash(seed));
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uint64_t theta = theta_constants::MAX_THETA;
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uint32_t num_entries = 0;
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if (!is_empty) {
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if (preamble_longs == 1) {
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num_entries = 1;
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} else {
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num_entries = read<uint32_t>(is);
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read<uint32_t>(is); // unused
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if (preamble_longs > 2) {
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theta = read<uint64_t>(is);
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}
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}
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}
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std::vector<uint64_t, A> entries(num_entries, 0, allocator);
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if (!is_empty) read(is, entries.data(), sizeof(uint64_t) * entries.size());
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const bool is_ordered = flags_byte & (1 << flags::IS_ORDERED);
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if (!is.good()) throw std::runtime_error("error reading from std::istream");
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return compact_theta_sketch_alloc(is_empty, is_ordered, seed_hash, theta, std::move(entries));
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}
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case 1: {
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const auto seed_hash = compute_seed_hash(seed);
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checker<true>::check_sketch_type(type, SKETCH_TYPE);
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read<uint8_t>(is); // unused
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read<uint32_t>(is); // unused
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const auto num_entries = read<uint32_t>(is);
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read<uint32_t>(is); //unused
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const auto theta = read<uint64_t>(is);
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std::vector<uint64_t, A> entries(num_entries, 0, allocator);
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bool is_empty = (num_entries == 0) && (theta == theta_constants::MAX_THETA);
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if (!is_empty)
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read(is, entries.data(), sizeof(uint64_t) * entries.size());
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if (!is.good())
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throw std::runtime_error("error reading from std::istream");
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return compact_theta_sketch_alloc(is_empty, true, seed_hash, theta, std::move(entries));
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}
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case 2: {
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checker<true>::check_sketch_type(type, SKETCH_TYPE);
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read<uint8_t>(is); // unused
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read<uint16_t>(is); // unused
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const uint16_t seed_hash = read<uint16_t>(is);
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checker<true>::check_seed_hash(seed_hash, compute_seed_hash(seed));
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if (preamble_longs == 1) {
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if (!is.good())
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throw std::runtime_error("error reading from std::istream");
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std::vector<uint64_t, A> entries(0, 0, allocator);
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return compact_theta_sketch_alloc(true, true, seed_hash, theta_constants::MAX_THETA, std::move(entries));
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+
} else if (preamble_longs == 2) {
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+
const uint32_t num_entries = read<uint32_t>(is);
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+
read<uint32_t>(is); // unused
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+
std::vector<uint64_t, A> entries(num_entries, 0, allocator);
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+
if (num_entries == 0) {
|
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+
return compact_theta_sketch_alloc(true, true, seed_hash, theta_constants::MAX_THETA, std::move(entries));
|
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+
}
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+
read(is, entries.data(), entries.size() * sizeof(uint64_t));
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|
+
if (!is.good())
|
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+
throw std::runtime_error("error reading from std::istream");
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|
+
return compact_theta_sketch_alloc(false, true, seed_hash, theta_constants::MAX_THETA, std::move(entries));
|
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|
+
} else if (preamble_longs == 3) {
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|
+
const uint32_t num_entries = read<uint32_t>(is);
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|
+
read<uint32_t>(is); // unused
|
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+
const auto theta = read<uint64_t>(is);
|
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|
+
bool is_empty = (num_entries == 0) && (theta == theta_constants::MAX_THETA);
|
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|
+
std::vector<uint64_t, A> entries(num_entries, 0, allocator);
|
493
|
+
if (is_empty) {
|
494
|
+
if (!is.good())
|
495
|
+
throw std::runtime_error("error reading from std::istream");
|
496
|
+
return compact_theta_sketch_alloc(true, true, seed_hash, theta, std::move(entries));
|
497
|
+
} else {
|
498
|
+
read(is, entries.data(), sizeof(uint64_t) * entries.size());
|
499
|
+
if (!is.good())
|
500
|
+
throw std::runtime_error("error reading from std::istream");
|
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|
+
return compact_theta_sketch_alloc(false, true, seed_hash, theta, std::move(entries));
|
502
|
+
}
|
503
|
+
} else {
|
504
|
+
throw std::invalid_argument(std::to_string(preamble_longs) + " longs of premable, but expected 1, 2, or 3");
|
421
505
|
}
|
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|
-
}
|
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506
|
}
|
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|
-
|
425
|
-
|
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|
-
|
427
|
-
|
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|
-
|
429
|
-
|
507
|
+
default:
|
508
|
+
// this should always fail since the valid cases are handled above
|
509
|
+
checker<true>::check_serial_version(serial_version, SERIAL_VERSION);
|
510
|
+
// this throw is never reached, because check_serial_version will throw an informative exception.
|
511
|
+
// This is only here to avoid a compiler warning about a path without a return value.
|
512
|
+
throw std::invalid_argument("unexpected sketch serialization version");
|
513
|
+
}
|
430
514
|
}
|
431
515
|
|
432
516
|
template<typename A>
|
433
517
|
compact_theta_sketch_alloc<A> compact_theta_sketch_alloc<A>::deserialize(const void* bytes, size_t size, uint64_t seed, const A& allocator) {
|
434
|
-
|
435
|
-
|
436
|
-
const char* base = ptr;
|
437
|
-
uint8_t preamble_longs;
|
438
|
-
ptr += copy_from_mem(ptr, preamble_longs);
|
439
|
-
uint8_t serial_version;
|
440
|
-
ptr += copy_from_mem(ptr, serial_version);
|
441
|
-
uint8_t type;
|
442
|
-
ptr += copy_from_mem(ptr, type);
|
443
|
-
ptr += sizeof(uint16_t); // unused
|
444
|
-
uint8_t flags_byte;
|
445
|
-
ptr += copy_from_mem(ptr, flags_byte);
|
446
|
-
uint16_t seed_hash;
|
447
|
-
ptr += copy_from_mem(ptr, seed_hash);
|
448
|
-
checker<true>::check_sketch_type(type, SKETCH_TYPE);
|
449
|
-
checker<true>::check_serial_version(serial_version, SERIAL_VERSION);
|
450
|
-
const bool is_empty = flags_byte & (1 << flags::IS_EMPTY);
|
451
|
-
if (!is_empty) checker<true>::check_seed_hash(seed_hash, compute_seed_hash(seed));
|
452
|
-
|
453
|
-
uint64_t theta = theta_constants::MAX_THETA;
|
454
|
-
uint32_t num_entries = 0;
|
455
|
-
if (!is_empty) {
|
456
|
-
if (preamble_longs == 1) {
|
457
|
-
num_entries = 1;
|
458
|
-
} else {
|
459
|
-
ensure_minimum_memory(size, 8); // read the first prelong before this method
|
460
|
-
ptr += copy_from_mem(ptr, num_entries);
|
461
|
-
ptr += sizeof(uint32_t); // unused
|
462
|
-
if (preamble_longs > 2) {
|
463
|
-
ensure_minimum_memory(size, (preamble_longs - 1) << 3);
|
464
|
-
ptr += copy_from_mem(ptr, theta);
|
465
|
-
}
|
466
|
-
}
|
467
|
-
}
|
468
|
-
const size_t entries_size_bytes = sizeof(uint64_t) * num_entries;
|
469
|
-
check_memory_size(ptr - base + entries_size_bytes, size);
|
470
|
-
std::vector<uint64_t, A> entries(num_entries, 0, allocator);
|
471
|
-
if (!is_empty) ptr += copy_from_mem(ptr, entries.data(), entries_size_bytes);
|
472
|
-
|
473
|
-
const bool is_ordered = flags_byte & (1 << flags::IS_ORDERED);
|
474
|
-
return compact_theta_sketch_alloc(is_empty, is_ordered, seed_hash, theta, std::move(entries));
|
518
|
+
auto data = compact_theta_sketch_parser<true>::parse(bytes, size, seed, false);
|
519
|
+
return compact_theta_sketch_alloc(data.is_empty, data.is_ordered, data.seed_hash, data.theta, std::vector<uint64_t, A>(data.entries, data.entries + data.num_entries, allocator));
|
475
520
|
}
|
476
521
|
|
477
522
|
// wrapped compact sketch
|
@@ -533,6 +578,18 @@ auto wrapped_compact_theta_sketch_alloc<A>::end() const -> const_iterator {
|
|
533
578
|
return entries_ + num_entries_;
|
534
579
|
}
|
535
580
|
|
581
|
+
template<typename A>
|
582
|
+
void wrapped_compact_theta_sketch_alloc<A>::print_specifics(std::ostringstream&) const {}
|
583
|
+
|
584
|
+
template<typename A>
|
585
|
+
void wrapped_compact_theta_sketch_alloc<A>::print_items(std::ostringstream& os) const {
|
586
|
+
os << "### Retained entries" << std::endl;
|
587
|
+
for (const auto& hash: *this) {
|
588
|
+
os << hash << std::endl;
|
589
|
+
}
|
590
|
+
os << "### End retained entries" << std::endl;
|
591
|
+
}
|
592
|
+
|
536
593
|
} /* namespace datasketches */
|
537
594
|
|
538
595
|
#endif
|
@@ -60,11 +60,16 @@ public:
|
|
60
60
|
*/
|
61
61
|
CompactSketch get_result(bool ordered = true) const;
|
62
62
|
|
63
|
+
/**
|
64
|
+
* Reset the union to the initial empty state
|
65
|
+
*/
|
66
|
+
void reset();
|
67
|
+
|
63
68
|
private:
|
64
69
|
State state_;
|
65
70
|
|
66
71
|
// for builder
|
67
|
-
theta_union_alloc(uint8_t lg_cur_size, uint8_t lg_nom_size, resize_factor rf, uint64_t theta, uint64_t seed, const Allocator& allocator);
|
72
|
+
theta_union_alloc(uint8_t lg_cur_size, uint8_t lg_nom_size, resize_factor rf, float p, uint64_t theta, uint64_t seed, const Allocator& allocator);
|
68
73
|
};
|
69
74
|
|
70
75
|
template<typename A>
|
@@ -38,7 +38,7 @@ public:
|
|
38
38
|
using resize_factor = typename hash_table::resize_factor;
|
39
39
|
using comparator = compare_by_key<ExtractKey>;
|
40
40
|
|
41
|
-
theta_union_base(uint8_t lg_cur_size, uint8_t lg_nom_size, resize_factor rf, uint64_t theta, uint64_t seed, const Policy& policy, const Allocator& allocator);
|
41
|
+
theta_union_base(uint8_t lg_cur_size, uint8_t lg_nom_size, resize_factor rf, float p, uint64_t theta, uint64_t seed, const Policy& policy, const Allocator& allocator);
|
42
42
|
|
43
43
|
template<typename FwdSketch>
|
44
44
|
void update(FwdSketch&& sketch);
|
@@ -47,6 +47,8 @@ public:
|
|
47
47
|
|
48
48
|
const Policy& get_policy() const;
|
49
49
|
|
50
|
+
void reset();
|
51
|
+
|
50
52
|
private:
|
51
53
|
Policy policy_;
|
52
54
|
hash_table table_;
|
@@ -21,6 +21,7 @@
|
|
21
21
|
#define THETA_UNION_BASE_IMPL_HPP_
|
22
22
|
|
23
23
|
#include <algorithm>
|
24
|
+
#include <stdexcept>
|
24
25
|
|
25
26
|
#include "conditional_forward.hpp"
|
26
27
|
|
@@ -28,9 +29,9 @@ namespace datasketches {
|
|
28
29
|
|
29
30
|
template<typename EN, typename EK, typename P, typename S, typename CS, typename A>
|
30
31
|
theta_union_base<EN, EK, P, S, CS, A>::theta_union_base(uint8_t lg_cur_size, uint8_t lg_nom_size, resize_factor rf,
|
31
|
-
uint64_t theta, uint64_t seed, const P& policy, const A& allocator):
|
32
|
+
float p, uint64_t theta, uint64_t seed, const P& policy, const A& allocator):
|
32
33
|
policy_(policy),
|
33
|
-
table_(lg_cur_size, lg_nom_size, rf, theta, seed, allocator),
|
34
|
+
table_(lg_cur_size, lg_nom_size, rf, p, theta, seed, allocator),
|
34
35
|
union_theta_(table_.theta_)
|
35
36
|
{}
|
36
37
|
|
@@ -84,6 +85,12 @@ const P& theta_union_base<EN, EK, P, S, CS, A>::get_policy() const {
|
|
84
85
|
return policy_;
|
85
86
|
}
|
86
87
|
|
88
|
+
template<typename EN, typename EK, typename P, typename S, typename CS, typename A>
|
89
|
+
void theta_union_base<EN, EK, P, S, CS, A>::reset() {
|
90
|
+
table_.reset();
|
91
|
+
union_theta_ = table_.theta_;
|
92
|
+
}
|
93
|
+
|
87
94
|
} /* namespace datasketches */
|
88
95
|
|
89
96
|
#endif
|
@@ -23,8 +23,8 @@
|
|
23
23
|
namespace datasketches {
|
24
24
|
|
25
25
|
template<typename A>
|
26
|
-
theta_union_alloc<A>::theta_union_alloc(uint8_t lg_cur_size, uint8_t lg_nom_size, resize_factor rf, uint64_t theta, uint64_t seed, const A& allocator):
|
27
|
-
state_(lg_cur_size, lg_nom_size, rf, theta, seed, nop_policy(), allocator)
|
26
|
+
theta_union_alloc<A>::theta_union_alloc(uint8_t lg_cur_size, uint8_t lg_nom_size, resize_factor rf, float p, uint64_t theta, uint64_t seed, const A& allocator):
|
27
|
+
state_(lg_cur_size, lg_nom_size, rf, p, theta, seed, nop_policy(), allocator)
|
28
28
|
{}
|
29
29
|
|
30
30
|
template<typename A>
|
@@ -38,14 +38,17 @@ auto theta_union_alloc<A>::get_result(bool ordered) const -> CompactSketch {
|
|
38
38
|
return state_.get_result(ordered);
|
39
39
|
}
|
40
40
|
|
41
|
+
template<typename A>
|
42
|
+
void theta_union_alloc<A>::reset() {
|
43
|
+
state_.reset();
|
44
|
+
}
|
45
|
+
|
41
46
|
template<typename A>
|
42
47
|
theta_union_alloc<A>::builder::builder(const A& allocator): theta_base_builder<builder, A>(allocator) {}
|
43
48
|
|
44
49
|
template<typename A>
|
45
50
|
auto theta_union_alloc<A>::builder::build() const -> theta_union_alloc {
|
46
|
-
return theta_union_alloc(
|
47
|
-
this->starting_sub_multiple(this->lg_k_ + 1, this->MIN_LG_K, static_cast<uint8_t>(this->rf_)),
|
48
|
-
this->lg_k_, this->rf_, this->starting_theta(), this->seed_, this->allocator_);
|
51
|
+
return theta_union_alloc(this->starting_lg_size(), this->lg_k_, this->rf_, this->p_, this->starting_theta(), this->seed_, this->allocator_);
|
49
52
|
}
|
50
53
|
|
51
54
|
} /* namespace datasketches */
|
@@ -40,8 +40,8 @@ struct theta_update_sketch_base {
|
|
40
40
|
using resize_factor = theta_constants::resize_factor;
|
41
41
|
using comparator = compare_by_key<ExtractKey>;
|
42
42
|
|
43
|
-
theta_update_sketch_base(uint8_t lg_cur_size, uint8_t lg_nom_size, resize_factor rf,
|
44
|
-
uint64_t seed, const Allocator& allocator, bool is_empty = true);
|
43
|
+
theta_update_sketch_base(uint8_t lg_cur_size, uint8_t lg_nom_size, resize_factor rf, float p,
|
44
|
+
uint64_t theta, uint64_t seed, const Allocator& allocator, bool is_empty = true);
|
45
45
|
theta_update_sketch_base(const theta_update_sketch_base& other);
|
46
46
|
theta_update_sketch_base(theta_update_sketch_base&& other) noexcept;
|
47
47
|
~theta_update_sketch_base();
|
@@ -75,6 +75,7 @@ struct theta_update_sketch_base {
|
|
75
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uint8_t lg_cur_size_;
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uint8_t lg_nom_size_;
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resize_factor rf_;
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float p_;
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uint32_t num_entries_;
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uint64_t theta_;
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uint64_t seed_;
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@@ -83,6 +84,7 @@ struct theta_update_sketch_base {
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void resize();
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void rebuild();
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void trim();
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void reset();
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static inline uint32_t get_capacity(uint8_t lg_cur_size, uint8_t lg_nom_size);
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static inline uint32_t get_stride(uint64_t key, uint8_t lg_size);
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@@ -94,7 +96,7 @@ struct theta_update_sketch_base {
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template<typename Derived, typename Allocator>
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class theta_base_builder {
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public:
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// TODO: Redundant and deprecated. Will be removed in next major
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// TODO: Redundant and deprecated. Will be removed in next major version release.
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using resize_factor = theta_constants::resize_factor;
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static const uint8_t MIN_LG_K = theta_constants::MIN_LG_K;
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static const uint8_t MAX_LG_K = theta_constants::MAX_LG_K;
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@@ -149,7 +151,6 @@ protected:
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uint64_t starting_theta() const;
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uint8_t starting_lg_size() const;
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static uint8_t starting_sub_multiple(uint8_t lg_tgt, uint8_t lg_min, uint8_t lg_rf);
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};
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// key extractor
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@@ -23,16 +23,20 @@
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#include <iostream>
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#include <sstream>
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#include <algorithm>
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#include <stdexcept>
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#include "theta_helpers.hpp"
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namespace datasketches {
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template<typename EN, typename EK, typename A>
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-
theta_update_sketch_base<EN, EK, A>::theta_update_sketch_base(uint8_t lg_cur_size, uint8_t lg_nom_size, resize_factor rf, uint64_t theta, uint64_t seed, const A& allocator, bool is_empty):
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theta_update_sketch_base<EN, EK, A>::theta_update_sketch_base(uint8_t lg_cur_size, uint8_t lg_nom_size, resize_factor rf, float p, uint64_t theta, uint64_t seed, const A& allocator, bool is_empty):
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allocator_(allocator),
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is_empty_(is_empty),
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lg_cur_size_(lg_cur_size),
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lg_nom_size_(lg_nom_size),
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rf_(rf),
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p_(p),
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num_entries_(0),
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theta_(theta),
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seed_(seed),
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@@ -52,6 +56,7 @@ is_empty_(other.is_empty_),
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lg_cur_size_(other.lg_cur_size_),
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lg_nom_size_(other.lg_nom_size_),
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rf_(other.rf_),
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+
p_(other.p_),
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num_entries_(other.num_entries_),
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theta_(other.theta_),
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seed_(other.seed_),
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@@ -77,6 +82,7 @@ is_empty_(other.is_empty_),
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lg_cur_size_(other.lg_cur_size_),
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lg_nom_size_(other.lg_nom_size_),
|
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rf_(other.rf_),
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+
p_(other.p_),
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num_entries_(other.num_entries_),
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theta_(other.theta_),
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seed_(other.seed_),
|
@@ -105,6 +111,7 @@ theta_update_sketch_base<EN, EK, A>& theta_update_sketch_base<EN, EK, A>::operat
|
|
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|
std::swap(lg_cur_size_, copy.lg_cur_size_);
|
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|
std::swap(lg_nom_size_, copy.lg_nom_size_);
|
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|
std::swap(rf_, copy.rf_);
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|
+
std::swap(p_, copy.p_);
|
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|
std::swap(num_entries_, copy.num_entries_);
|
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|
std::swap(theta_, copy.theta_);
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std::swap(seed_, copy.seed_);
|
@@ -119,6 +126,7 @@ theta_update_sketch_base<EN, EK, A>& theta_update_sketch_base<EN, EK, A>::operat
|
|
119
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|
std::swap(lg_cur_size_, other.lg_cur_size_);
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|
std::swap(lg_nom_size_, other.lg_nom_size_);
|
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|
std::swap(rf_, other.rf_);
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|
+
std::swap(p_, other.p_);
|
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std::swap(num_entries_, other.num_entries_);
|
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|
std::swap(theta_, other.theta_);
|
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|
std::swap(seed_, other.seed_);
|
@@ -247,6 +255,29 @@ void theta_update_sketch_base<EN, EK, A>::trim() {
|
|
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if (num_entries_ > static_cast<uint32_t>(1 << lg_nom_size_)) rebuild();
|
248
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|
}
|
249
257
|
|
258
|
+
template<typename EN, typename EK, typename A>
|
259
|
+
void theta_update_sketch_base<EN, EK, A>::reset() {
|
260
|
+
const size_t cur_size = 1ULL << lg_cur_size_;
|
261
|
+
for (size_t i = 0; i < cur_size; ++i) {
|
262
|
+
if (EK()(entries_[i]) != 0) {
|
263
|
+
entries_[i].~EN();
|
264
|
+
EK()(entries_[i]) = 0;
|
265
|
+
}
|
266
|
+
}
|
267
|
+
const uint8_t starting_lg_size = theta_build_helper<true>::starting_sub_multiple(
|
268
|
+
lg_nom_size_ + 1, theta_constants::MIN_LG_K, static_cast<uint8_t>(rf_));
|
269
|
+
if (starting_lg_size != lg_cur_size_) {
|
270
|
+
allocator_.deallocate(entries_, cur_size);
|
271
|
+
lg_cur_size_ = starting_lg_size;
|
272
|
+
const size_t new_size = 1ULL << starting_lg_size;
|
273
|
+
entries_ = allocator_.allocate(new_size);
|
274
|
+
for (size_t i = 0; i < new_size; ++i) EK()(entries_[i]) = 0;
|
275
|
+
}
|
276
|
+
num_entries_ = 0;
|
277
|
+
theta_ = theta_build_helper<true>::starting_theta_from_p(p_);
|
278
|
+
is_empty_ = true;
|
279
|
+
}
|
280
|
+
|
250
281
|
template<typename EN, typename EK, typename A>
|
251
282
|
void theta_update_sketch_base<EN, EK, A>::consolidate_non_empty(EN* entries, size_t size, size_t num) {
|
252
283
|
// find the first empty slot
|
@@ -310,18 +341,12 @@ Derived& theta_base_builder<Derived, Allocator>::set_seed(uint64_t seed) {
|
|
310
341
|
|
311
342
|
template<typename Derived, typename Allocator>
|
312
343
|
uint64_t theta_base_builder<Derived, Allocator>::starting_theta() const {
|
313
|
-
|
314
|
-
return theta_constants::MAX_THETA;
|
344
|
+
return theta_build_helper<true>::starting_theta_from_p(p_);
|
315
345
|
}
|
316
346
|
|
317
347
|
template<typename Derived, typename Allocator>
|
318
348
|
uint8_t theta_base_builder<Derived, Allocator>::starting_lg_size() const {
|
319
|
-
return starting_sub_multiple(lg_k_ + 1, MIN_LG_K, static_cast<uint8_t>(rf_));
|
320
|
-
}
|
321
|
-
|
322
|
-
template<typename Derived, typename Allocator>
|
323
|
-
uint8_t theta_base_builder<Derived, Allocator>::starting_sub_multiple(uint8_t lg_tgt, uint8_t lg_min, uint8_t lg_rf) {
|
324
|
-
return (lg_tgt <= lg_min) ? lg_min : (lg_rf == 0) ? lg_tgt : ((lg_tgt - lg_min) % lg_rf) + lg_min;
|
349
|
+
return theta_build_helper<true>::starting_sub_multiple(lg_k_ + 1, MIN_LG_K, static_cast<uint8_t>(rf_));
|
325
350
|
}
|
326
351
|
|
327
352
|
// iterator
|
Binary file
|