datasketches 0.2.3 → 0.2.6
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- checksums.yaml +4 -4
- data/CHANGELOG.md +12 -0
- data/README.md +8 -8
- data/ext/datasketches/kll_wrapper.cpp +7 -3
- data/ext/datasketches/theta_wrapper.cpp +20 -4
- data/lib/datasketches/version.rb +1 -1
- data/vendor/datasketches-cpp/CMakeLists.txt +25 -5
- data/vendor/datasketches-cpp/MANIFEST.in +3 -0
- data/vendor/datasketches-cpp/NOTICE +6 -5
- data/vendor/datasketches-cpp/README.md +76 -9
- data/vendor/datasketches-cpp/cmake/DataSketchesConfig.cmake.in +10 -0
- data/vendor/datasketches-cpp/common/CMakeLists.txt +18 -13
- data/vendor/datasketches-cpp/common/include/binomial_bounds.hpp +1 -0
- data/vendor/datasketches-cpp/common/include/common_defs.hpp +14 -0
- data/vendor/datasketches-cpp/{kll → common}/include/kolmogorov_smirnov.hpp +5 -3
- data/vendor/datasketches-cpp/{kll → common}/include/kolmogorov_smirnov_impl.hpp +13 -16
- data/vendor/datasketches-cpp/common/include/quantile_sketch_sorted_view.hpp +121 -0
- data/vendor/datasketches-cpp/common/include/quantile_sketch_sorted_view_impl.hpp +91 -0
- data/vendor/datasketches-cpp/common/test/test_type.hpp +2 -0
- data/vendor/datasketches-cpp/cpc/CMakeLists.txt +15 -35
- data/vendor/datasketches-cpp/cpc/include/cpc_compressor_impl.hpp +3 -1
- data/vendor/datasketches-cpp/cpc/include/cpc_confidence.hpp +1 -0
- data/vendor/datasketches-cpp/cpc/include/cpc_sketch_impl.hpp +5 -3
- data/vendor/datasketches-cpp/cpc/include/cpc_union_impl.hpp +10 -6
- data/vendor/datasketches-cpp/cpc/test/cpc_sketch_allocation_test.cpp +17 -0
- data/vendor/datasketches-cpp/cpc/test/cpc_sketch_test.cpp +1 -0
- data/vendor/datasketches-cpp/cpc/test/cpc_union_test.cpp +2 -0
- data/vendor/datasketches-cpp/fi/CMakeLists.txt +5 -15
- data/vendor/datasketches-cpp/fi/include/frequent_items_sketch.hpp +37 -5
- data/vendor/datasketches-cpp/fi/include/frequent_items_sketch_impl.hpp +29 -11
- data/vendor/datasketches-cpp/fi/test/frequent_items_sketch_custom_type_test.cpp +2 -1
- data/vendor/datasketches-cpp/fi/test/frequent_items_sketch_test.cpp +1 -0
- data/vendor/datasketches-cpp/hll/CMakeLists.txt +33 -56
- data/vendor/datasketches-cpp/hll/include/AuxHashMap-internal.hpp +2 -0
- data/vendor/datasketches-cpp/hll/include/CompositeInterpolationXTable-internal.hpp +1 -0
- data/vendor/datasketches-cpp/hll/include/CouponHashSet-internal.hpp +2 -2
- data/vendor/datasketches-cpp/hll/include/CouponList-internal.hpp +1 -0
- data/vendor/datasketches-cpp/hll/include/HllSketch-internal.hpp +6 -4
- data/vendor/datasketches-cpp/hll/include/HllSketchImpl-internal.hpp +2 -0
- data/vendor/datasketches-cpp/hll/include/HllSketchImplFactory.hpp +2 -0
- data/vendor/datasketches-cpp/hll/test/AuxHashMapTest.cpp +1 -0
- data/vendor/datasketches-cpp/hll/test/CouponHashSetTest.cpp +1 -0
- data/vendor/datasketches-cpp/hll/test/CouponListTest.cpp +2 -0
- data/vendor/datasketches-cpp/hll/test/HllArrayTest.cpp +1 -0
- data/vendor/datasketches-cpp/hll/test/HllSketchTest.cpp +59 -0
- data/vendor/datasketches-cpp/hll/test/HllUnionTest.cpp +2 -0
- data/vendor/datasketches-cpp/hll/test/TablesTest.cpp +1 -0
- data/vendor/datasketches-cpp/kll/CMakeLists.txt +5 -19
- data/vendor/datasketches-cpp/kll/include/kll_helper.hpp +0 -4
- data/vendor/datasketches-cpp/kll/include/kll_helper_impl.hpp +5 -2
- data/vendor/datasketches-cpp/kll/include/kll_sketch.hpp +108 -41
- data/vendor/datasketches-cpp/kll/include/kll_sketch_impl.hpp +150 -132
- data/vendor/datasketches-cpp/kll/test/kll_sketch_test.cpp +165 -31
- data/vendor/datasketches-cpp/kll/test/kolmogorov_smirnov_test.cpp +1 -1
- data/vendor/datasketches-cpp/pyproject.toml +1 -1
- data/vendor/datasketches-cpp/python/CMakeLists.txt +8 -1
- data/vendor/datasketches-cpp/python/README.md +13 -9
- data/vendor/datasketches-cpp/python/src/datasketches.cpp +4 -0
- data/vendor/datasketches-cpp/python/src/fi_wrapper.cpp +6 -1
- data/vendor/datasketches-cpp/python/src/kll_wrapper.cpp +48 -13
- data/vendor/datasketches-cpp/python/src/ks_wrapper.cpp +68 -0
- data/vendor/datasketches-cpp/python/src/quantiles_wrapper.cpp +240 -0
- data/vendor/datasketches-cpp/python/src/req_wrapper.cpp +9 -2
- data/vendor/datasketches-cpp/python/src/vector_of_kll.cpp +1 -0
- data/vendor/datasketches-cpp/python/tests/kll_test.py +10 -4
- data/vendor/datasketches-cpp/python/tests/quantiles_test.py +126 -0
- data/vendor/datasketches-cpp/quantiles/CMakeLists.txt +42 -0
- data/vendor/datasketches-cpp/quantiles/include/quantiles_sketch.hpp +656 -0
- data/vendor/datasketches-cpp/quantiles/include/quantiles_sketch_impl.hpp +1373 -0
- data/vendor/datasketches-cpp/quantiles/test/CMakeLists.txt +44 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n1000_v0.3.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n1000_v0.6.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n1000_v0.8.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n1000_v0.8.3.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n50_v0.3.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n50_v0.6.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n50_v0.8.0.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/Qk128_n50_v0.8.3.sk +0 -0
- data/vendor/datasketches-cpp/quantiles/test/kolmogorov_smirnov_test.cpp +110 -0
- data/vendor/datasketches-cpp/quantiles/test/quantiles_compatibility_test.cpp +129 -0
- data/vendor/datasketches-cpp/quantiles/test/quantiles_sketch_test.cpp +975 -0
- data/vendor/datasketches-cpp/req/CMakeLists.txt +6 -21
- data/vendor/datasketches-cpp/req/include/req_common.hpp +0 -5
- data/vendor/datasketches-cpp/req/include/req_compactor.hpp +6 -0
- data/vendor/datasketches-cpp/req/include/req_compactor_impl.hpp +30 -2
- data/vendor/datasketches-cpp/req/include/req_sketch.hpp +73 -23
- data/vendor/datasketches-cpp/req/include/req_sketch_impl.hpp +95 -63
- data/vendor/datasketches-cpp/req/test/req_sketch_test.cpp +74 -3
- data/vendor/datasketches-cpp/sampling/CMakeLists.txt +5 -9
- data/vendor/datasketches-cpp/sampling/include/var_opt_sketch.hpp +44 -7
- data/vendor/datasketches-cpp/sampling/include/var_opt_sketch_impl.hpp +44 -33
- data/vendor/datasketches-cpp/sampling/include/var_opt_union.hpp +41 -6
- data/vendor/datasketches-cpp/sampling/include/var_opt_union_impl.hpp +33 -15
- data/vendor/datasketches-cpp/sampling/test/var_opt_allocation_test.cpp +2 -2
- data/vendor/datasketches-cpp/sampling/test/var_opt_sketch_test.cpp +1 -0
- data/vendor/datasketches-cpp/sampling/test/var_opt_union_test.cpp +1 -0
- data/vendor/datasketches-cpp/setup.py +1 -1
- data/vendor/datasketches-cpp/theta/CMakeLists.txt +26 -45
- data/vendor/datasketches-cpp/theta/include/bounds_on_ratios_in_sampled_sets.hpp +1 -0
- data/vendor/datasketches-cpp/theta/include/compact_theta_sketch_parser_impl.hpp +92 -23
- data/vendor/datasketches-cpp/theta/include/theta_helpers.hpp +15 -0
- data/vendor/datasketches-cpp/theta/include/theta_intersection_base_impl.hpp +7 -6
- data/vendor/datasketches-cpp/theta/include/theta_set_difference_base_impl.hpp +3 -2
- data/vendor/datasketches-cpp/theta/include/theta_sketch.hpp +32 -15
- data/vendor/datasketches-cpp/theta/include/theta_sketch_impl.hpp +150 -93
- data/vendor/datasketches-cpp/theta/include/theta_union.hpp +6 -1
- data/vendor/datasketches-cpp/theta/include/theta_union_base.hpp +3 -1
- data/vendor/datasketches-cpp/theta/include/theta_union_base_impl.hpp +9 -2
- data/vendor/datasketches-cpp/theta/include/theta_union_impl.hpp +8 -5
- data/vendor/datasketches-cpp/theta/include/theta_update_sketch_base.hpp +5 -4
- data/vendor/datasketches-cpp/theta/include/theta_update_sketch_base_impl.hpp +34 -9
- data/vendor/datasketches-cpp/theta/test/CMakeLists.txt +1 -0
- data/vendor/datasketches-cpp/theta/test/theta_a_not_b_test.cpp +2 -0
- data/vendor/datasketches-cpp/theta/test/theta_compact_empty_from_java_v1.sk +0 -0
- data/vendor/datasketches-cpp/theta/test/theta_compact_empty_from_java_v2.sk +0 -0
- data/vendor/datasketches-cpp/theta/test/theta_compact_estimation_from_java_v1.sk +0 -0
- data/vendor/datasketches-cpp/theta/test/theta_compact_estimation_from_java_v2.sk +0 -0
- data/vendor/datasketches-cpp/theta/test/theta_compact_exact_from_java.sk +0 -0
- data/vendor/datasketches-cpp/theta/test/theta_intersection_test.cpp +2 -0
- data/vendor/datasketches-cpp/theta/test/theta_setop_test.cpp +446 -0
- data/vendor/datasketches-cpp/theta/test/theta_sketch_test.cpp +429 -1
- data/vendor/datasketches-cpp/theta/test/theta_union_test.cpp +25 -11
- data/vendor/datasketches-cpp/tuple/CMakeLists.txt +18 -33
- data/vendor/datasketches-cpp/tuple/include/array_of_doubles_sketch.hpp +1 -1
- data/vendor/datasketches-cpp/tuple/include/array_of_doubles_sketch_impl.hpp +3 -3
- data/vendor/datasketches-cpp/tuple/include/array_of_doubles_union.hpp +1 -1
- data/vendor/datasketches-cpp/tuple/include/array_of_doubles_union_impl.hpp +3 -3
- data/vendor/datasketches-cpp/tuple/include/tuple_sketch.hpp +29 -9
- data/vendor/datasketches-cpp/tuple/include/tuple_sketch_impl.hpp +34 -14
- data/vendor/datasketches-cpp/tuple/include/tuple_union.hpp +6 -1
- data/vendor/datasketches-cpp/tuple/include/tuple_union_impl.hpp +8 -3
- data/vendor/datasketches-cpp/tuple/test/array_of_doubles_sketch_test.cpp +16 -0
- data/vendor/datasketches-cpp/tuple/test/tuple_a_not_b_test.cpp +1 -0
- data/vendor/datasketches-cpp/tuple/test/tuple_intersection_test.cpp +1 -0
- data/vendor/datasketches-cpp/tuple/test/tuple_sketch_test.cpp +46 -8
- data/vendor/datasketches-cpp/tuple/test/tuple_union_test.cpp +8 -0
- metadata +33 -12
- data/vendor/datasketches-cpp/kll/include/kll_quantile_calculator.hpp +0 -75
- data/vendor/datasketches-cpp/kll/include/kll_quantile_calculator_impl.hpp +0 -184
- data/vendor/datasketches-cpp/req/include/req_quantile_calculator.hpp +0 -69
- data/vendor/datasketches-cpp/req/include/req_quantile_calculator_impl.hpp +0 -60
- data/vendor/datasketches-cpp/theta/test/theta_update_empty_from_java.sk +0 -0
- data/vendor/datasketches-cpp/theta/test/theta_update_estimation_from_java.sk +0 -0
@@ -64,8 +64,8 @@ compactors_(other.compactors_),
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min_value_(nullptr),
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max_value_(nullptr)
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{
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if (other.min_value_ != nullptr) min_value_ = new (
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if (other.max_value_ != nullptr) max_value_ = new (
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if (other.min_value_ != nullptr) min_value_ = new (allocator_.allocate(1)) T(*other.min_value_);
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if (other.max_value_ != nullptr) max_value_ = new (allocator_.allocate(1)) T(*other.max_value_);
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}
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template<typename T, typename C, typename S, typename A>
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@@ -113,6 +113,33 @@ req_sketch<T, C, S, A>& req_sketch<T, C, S, A>::operator=(req_sketch&& other) {
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return *this;
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}
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template<typename T, typename C, typename S, typename A>
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template<typename TT, typename CC, typename SS, typename AA>
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req_sketch<T, C, S, A>::req_sketch(const req_sketch<TT, CC, SS, AA>& other, const A& allocator):
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allocator_(allocator),
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k_(other.k_),
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hra_(other.hra_),
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max_nom_size_(other.max_nom_size_),
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num_retained_(other.num_retained_),
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n_(other.n_),
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compactors_(allocator),
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min_value_(nullptr),
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max_value_(nullptr)
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{
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static_assert(
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std::is_constructible<T, TT>::value,
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"Type converting constructor requires new type to be constructible from existing type"
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);
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compactors_.reserve(other.compactors_.size());
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for (const auto& compactor: other.compactors_) {
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compactors_.push_back(req_compactor<T, C, A>(compactor, allocator_));
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}
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if (!other.is_empty()) {
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min_value_ = new (allocator_.allocate(1)) T(other.get_min_value());
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max_value_ = new (allocator_.allocate(1)) T(other.get_max_value());
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}
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}
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template<typename T, typename C, typename S, typename A>
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uint16_t req_sketch<T, C, S, A>::get_k() const {
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return k_;
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return *max_value_;
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}
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template<typename T, typename C, typename S, typename A>
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C req_sketch<T, C, S, A>::get_comparator() const {
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return C();
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}
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template<typename T, typename C, typename S, typename A>
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template<bool inclusive>
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double req_sketch<T, C, S, A>::get_rank(const T& item) const {
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template<bool inclusive>
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auto req_sketch<T, C, S, A>::get_PMF(const T* split_points, uint32_t size) const -> vector_double {
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auto buckets = get_CDF<inclusive>(split_points, size);
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if (is_empty()) return buckets;
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for (uint32_t i = size; i > 0; --i) {
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buckets[i] -= buckets[i - 1];
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}
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template<typename T, typename C, typename S, typename A>
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template<bool inclusive>
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auto req_sketch<T, C, S, A>::get_quantile(double rank) const -> quantile_return_type {
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if (is_empty()) return get_invalid_value();
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if (rank == 0.0) return *min_value_;
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if (rank == 1.0) return *max_value_;
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if ((rank < 0.0) || (rank > 1.0)) {
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throw std::invalid_argument("Rank cannot be less than zero or greater than 1.0");
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}
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// possible side-effect of sorting level zero
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return get_sorted_view<inclusive>(true).get_quantile(rank);
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}
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template<typename T, typename C, typename S, typename A>
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std::vector<T, A> req_sketch<T, C, S, A>::get_quantiles(const double* ranks, uint32_t size) const {
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std::vector<T, A> quantiles(allocator_);
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if (is_empty()) return quantiles;
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QuantileCalculatorPtr quantile_calculator(nullptr, calculator_deleter(allocator_));
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quantiles.reserve(size);
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// possible side-effect of sorting level zero
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auto view = get_sorted_view<inclusive>(true);
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for (uint32_t i = 0; i < size; ++i) {
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const double rank = ranks[i];
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if ((rank < 0.0) || (rank > 1.0)) {
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if (rank == 0.0) quantiles.push_back(*min_value_);
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else if (rank == 1.0) quantiles.push_back(*max_value_);
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else {
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quantile_calculator = const_cast<req_sketch*>(this)->get_quantile_calculator<inclusive>();
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}
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quantiles.push_back(*(quantile_calculator->get_quantile(rank)));
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quantiles.push_back(view.get_quantile(rank));
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}
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}
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return quantiles;
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}
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template<typename T, typename C, typename S, typename A>
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class req_sketch<T, C, S, A>::calculator_deleter {
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public:
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calculator_deleter(const AllocCalc& allocator): allocator_(allocator) {}
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void operator() (QuantileCalculator* ptr) {
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if (ptr != nullptr) {
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ptr->~QuantileCalculator();
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allocator_.deallocate(ptr, 1);
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}
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}
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private:
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AllocCalc allocator_;
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};
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template<bool inclusive>
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quantile_sketch_sorted_view<T, C, A> req_sketch<T, C, S, A>::get_sorted_view(bool cumulative) const {
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if (!compactors_[0].is_sorted()) {
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const_cast<Compactor&>(compactors_[0]).sort(); // allow this side effect
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}
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QuantileCalculatorPtr quantile_calculator(
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new (ac.allocate(1)) req_quantile_calculator<T, C, A>(n_, ac),
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calculator_deleter(ac)
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);
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quantile_sketch_sorted_view<T, C, A> view(get_num_retained(), allocator_);
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for (auto& compactor: compactors_) {
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view.add(compactor.begin(), compactor.end(), 1 << compactor.get_lg_weight());
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}
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if (cumulative) view.template convert_to_cummulative<inclusive>();
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return view;
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}
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template<typename T, typename C, typename S, typename A>
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@@ -348,8 +364,8 @@ double req_sketch<T, C, S, A>::relative_rse_factor() {
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// implementation for fixed-size arithmetic types (integral and floating point)
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template<typename T, typename C, typename S, typename A>
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template<typename TT, typename std::enable_if<std::is_arithmetic<TT>::value, int>::type>
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size_t req_sketch<T, C, S, A>::get_serialized_size_bytes() const {
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template<typename TT, typename SerDe, typename std::enable_if<std::is_arithmetic<TT>::value, int>::type>
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size_t req_sketch<T, C, S, A>::get_serialized_size_bytes(const SerDe& sd) const {
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} else {
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for (const auto& compactor: compactors_) size += compactor.get_serialized_size_bytes(
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for (const auto& compactor: compactors_) size += compactor.get_serialized_size_bytes(sd);
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}
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return size;
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template<typename TT, typename std::enable_if<!std::is_arithmetic<TT>::value, int>::type>
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size_t req_sketch<T, C, S, A>::get_serialized_size_bytes() const {
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template<typename TT, typename SerDe, typename std::enable_if<!std::is_arithmetic<TT>::value, int>::type>
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size_t req_sketch<T, C, S, A>::get_serialized_size_bytes(const SerDe& sd) const {
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size += sizeof(n_);
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size +=
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size +=
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size += sd.size_of_item(*min_value_);
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size += sd.size_of_item(*max_value_);
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}
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size +=
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size += sd.size_of_item(*compactors_[0].begin());
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} else {
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for (const auto& compactor: compactors_) size += compactor.get_serialized_size_bytes(
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for (const auto& compactor: compactors_) size += compactor.get_serialized_size_bytes(sd);
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}
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return size;
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}
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template<typename T, typename C, typename S, typename A>
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template<typename SerDe>
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void req_sketch<T, C, S, A>::serialize(std::ostream& os, const SerDe& sd) const {
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const uint8_t preamble_ints = is_estimation_mode() ? 4 : 2;
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write(os, preamble_ints);
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const uint8_t serial_version = SERIAL_VERSION;
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write(os, n_);
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sd.serialize(os, min_value_, 1);
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sd.serialize(os, max_value_, 1);
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}
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sd.serialize(os, compactors_[0].begin(), num_raw_items);
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} else {
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for (const auto& compactor: compactors_) compactor.serialize(os,
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for (const auto& compactor: compactors_) compactor.serialize(os, sd);
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}
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}
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template<typename T, typename C, typename S, typename A>
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template<typename SerDe>
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auto req_sketch<T, C, S, A>::serialize(unsigned header_size_bytes, const SerDe& sd) const -> vector_bytes {
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const size_t size = header_size_bytes + get_serialized_size_bytes(sd);
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vector_bytes bytes(size, 0, allocator_);
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uint8_t* ptr = bytes.data() + header_size_bytes;
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const uint8_t* end_ptr = ptr + size;
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@@ -445,13 +463,13 @@ auto req_sketch<T, C, S, A>::serialize(unsigned header_size_bytes) const -> vect
|
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if (!is_empty()) {
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if (is_estimation_mode()) {
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ptr += copy_to_mem(n_, ptr);
|
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-
ptr +=
|
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-
ptr +=
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+
ptr += sd.serialize(ptr, end_ptr - ptr, min_value_, 1);
|
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+
ptr += sd.serialize(ptr, end_ptr - ptr, max_value_, 1);
|
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}
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if (raw_items) {
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ptr +=
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+
ptr += sd.serialize(ptr, end_ptr - ptr, compactors_[0].begin(), num_raw_items);
|
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} else {
|
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for (const auto& compactor: compactors_) ptr += compactor.serialize(ptr, end_ptr - ptr,
|
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+
for (const auto& compactor: compactors_) ptr += compactor.serialize(ptr, end_ptr - ptr, sd);
|
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}
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}
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return bytes;
|
@@ -459,6 +477,12 @@ auto req_sketch<T, C, S, A>::serialize(unsigned header_size_bytes) const -> vect
|
|
459
477
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|
460
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template<typename T, typename C, typename S, typename A>
|
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req_sketch<T, C, S, A> req_sketch<T, C, S, A>::deserialize(std::istream& is, const A& allocator) {
|
480
|
+
return deserialize(is, S(), allocator);
|
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|
+
}
|
482
|
+
|
483
|
+
template<typename T, typename C, typename S, typename A>
|
484
|
+
template<typename SerDe>
|
485
|
+
req_sketch<T, C, S, A> req_sketch<T, C, S, A>::deserialize(std::istream& is, const SerDe& sd, const A& allocator) {
|
462
486
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const auto preamble_ints = read<uint8_t>(is);
|
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const auto serial_version = read<uint8_t>(is);
|
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const auto family_id = read<uint8_t>(is);
|
@@ -490,19 +514,19 @@ req_sketch<T, C, S, A> req_sketch<T, C, S, A>::deserialize(std::istream& is, con
|
|
490
514
|
uint64_t n = 1;
|
491
515
|
if (num_levels > 1) {
|
492
516
|
n = read<uint64_t>(is);
|
493
|
-
|
517
|
+
sd.deserialize(is, min_value_buffer.get(), 1);
|
494
518
|
// serde call did not throw, repackage with destrtuctor
|
495
519
|
min_value = std::unique_ptr<T, item_deleter>(min_value_buffer.release(), item_deleter(allocator));
|
496
|
-
|
520
|
+
sd.deserialize(is, max_value_buffer.get(), 1);
|
497
521
|
// serde call did not throw, repackage with destrtuctor
|
498
522
|
max_value = std::unique_ptr<T, item_deleter>(max_value_buffer.release(), item_deleter(allocator));
|
499
523
|
}
|
500
524
|
|
501
525
|
if (raw_items) {
|
502
|
-
compactors.push_back(Compactor::deserialize(is,
|
526
|
+
compactors.push_back(Compactor::deserialize(is, sd, allocator, is_level_0_sorted, k, num_raw_items, hra));
|
503
527
|
} else {
|
504
528
|
for (size_t i = 0; i < num_levels; ++i) {
|
505
|
-
compactors.push_back(Compactor::deserialize(is,
|
529
|
+
compactors.push_back(Compactor::deserialize(is, sd, allocator, i == 0 ? is_level_0_sorted : true, hra));
|
506
530
|
}
|
507
531
|
}
|
508
532
|
if (num_levels == 1) {
|
@@ -529,6 +553,12 @@ req_sketch<T, C, S, A> req_sketch<T, C, S, A>::deserialize(std::istream& is, con
|
|
529
553
|
|
530
554
|
template<typename T, typename C, typename S, typename A>
|
531
555
|
req_sketch<T, C, S, A> req_sketch<T, C, S, A>::deserialize(const void* bytes, size_t size, const A& allocator) {
|
556
|
+
return deserialize(bytes, size, S(), allocator);
|
557
|
+
}
|
558
|
+
|
559
|
+
template<typename T, typename C, typename S, typename A>
|
560
|
+
template<typename SerDe>
|
561
|
+
req_sketch<T, C, S, A> req_sketch<T, C, S, A>::deserialize(const void* bytes, size_t size, const SerDe& sd, const A& allocator) {
|
532
562
|
ensure_minimum_memory(size, 8);
|
533
563
|
const char* ptr = static_cast<const char*>(bytes);
|
534
564
|
const char* end_ptr = static_cast<const char*>(bytes) + size;
|
@@ -571,21 +601,21 @@ req_sketch<T, C, S, A> req_sketch<T, C, S, A>::deserialize(const void* bytes, si
|
|
571
601
|
if (num_levels > 1) {
|
572
602
|
ensure_minimum_memory(end_ptr - ptr, sizeof(n));
|
573
603
|
ptr += copy_from_mem(ptr, n);
|
574
|
-
ptr +=
|
604
|
+
ptr += sd.deserialize(ptr, end_ptr - ptr, min_value_buffer.get(), 1);
|
575
605
|
// serde call did not throw, repackage with destrtuctor
|
576
606
|
min_value = std::unique_ptr<T, item_deleter>(min_value_buffer.release(), item_deleter(allocator));
|
577
|
-
ptr +=
|
607
|
+
ptr += sd.deserialize(ptr, end_ptr - ptr, max_value_buffer.get(), 1);
|
578
608
|
// serde call did not throw, repackage with destrtuctor
|
579
609
|
max_value = std::unique_ptr<T, item_deleter>(max_value_buffer.release(), item_deleter(allocator));
|
580
610
|
}
|
581
611
|
|
582
612
|
if (raw_items) {
|
583
|
-
auto pair = Compactor::deserialize(ptr, end_ptr - ptr,
|
613
|
+
auto pair = Compactor::deserialize(ptr, end_ptr - ptr, sd, allocator, is_level_0_sorted, k, num_raw_items, hra);
|
584
614
|
compactors.push_back(std::move(pair.first));
|
585
615
|
ptr += pair.second;
|
586
616
|
} else {
|
587
617
|
for (size_t i = 0; i < num_levels; ++i) {
|
588
|
-
auto pair = Compactor::deserialize(ptr, end_ptr - ptr,
|
618
|
+
auto pair = Compactor::deserialize(ptr, end_ptr - ptr, sd, allocator, i == 0 ? is_level_0_sorted : true, hra);
|
589
619
|
compactors.push_back(std::move(pair.first));
|
590
620
|
ptr += pair.second;
|
591
621
|
}
|
@@ -653,7 +683,9 @@ void req_sketch<T, C, S, A>::compress() {
|
|
653
683
|
|
654
684
|
template<typename T, typename C, typename S, typename A>
|
655
685
|
string<A> req_sketch<T, C, S, A>::to_string(bool print_levels, bool print_items) const {
|
656
|
-
|
686
|
+
// Using a temporary stream for implementation here does not comply with AllocatorAwareContainer requirements.
|
687
|
+
// The stream does not support passing an allocator instance, and alternatives are complicated.
|
688
|
+
std::ostringstream os;
|
657
689
|
os << "### REQ sketch summary:" << std::endl;
|
658
690
|
os << " K : " << k_ << std::endl;
|
659
691
|
os << " High Rank Acc : " << (hra_ ? "true" : "false") << std::endl;
|
@@ -693,7 +725,7 @@ string<A> req_sketch<T, C, S, A>::to_string(bool print_levels, bool print_items)
|
|
693
725
|
}
|
694
726
|
os << "### End sketch data" << std::endl;
|
695
727
|
}
|
696
|
-
return os.str();
|
728
|
+
return string<A>(os.str().c_str(), allocator_);
|
697
729
|
}
|
698
730
|
|
699
731
|
template<typename T, typename C, typename S, typename A>
|
@@ -24,6 +24,7 @@
|
|
24
24
|
#include <fstream>
|
25
25
|
#include <sstream>
|
26
26
|
#include <limits>
|
27
|
+
#include <stdexcept>
|
27
28
|
|
28
29
|
namespace datasketches {
|
29
30
|
|
@@ -34,7 +35,7 @@ const std::string input_path = "test/";
|
|
34
35
|
#endif
|
35
36
|
|
36
37
|
TEST_CASE("req sketch: empty", "[req_sketch]") {
|
37
|
-
std::cout << "sizeof(req_float_sketch)=" << sizeof(req_sketch<float>) << "\n";
|
38
|
+
//std::cout << "sizeof(req_float_sketch)=" << sizeof(req_sketch<float>) << "\n";
|
38
39
|
req_sketch<float> sketch(12);
|
39
40
|
REQUIRE(sketch.get_k() == 12);
|
40
41
|
REQUIRE(sketch.is_HRA());
|
@@ -51,6 +52,10 @@ TEST_CASE("req sketch: empty", "[req_sketch]") {
|
|
51
52
|
REQUIRE(std::isnan(sketch.get_quantile(1)));
|
52
53
|
const double ranks[3] {0, 0.5, 1};
|
53
54
|
REQUIRE(sketch.get_quantiles(ranks, 3).size() == 0);
|
55
|
+
|
56
|
+
const float split_points[1] {0};
|
57
|
+
REQUIRE(sketch.get_CDF(split_points, 1).empty());
|
58
|
+
REQUIRE(sketch.get_PMF(split_points, 1).empty());
|
54
59
|
}
|
55
60
|
|
56
61
|
TEST_CASE("req sketch: single value, lra", "[req_sketch]") {
|
@@ -240,7 +245,7 @@ TEST_CASE("req sketch: byte serialize-deserialize single item", "[req_sketch]")
|
|
240
245
|
auto bytes = sketch.serialize();
|
241
246
|
REQUIRE(bytes.size() == sketch.get_serialized_size_bytes());
|
242
247
|
auto sketch2 = req_sketch<float>::deserialize(bytes.data(), bytes.size());
|
243
|
-
std::cout << sketch2.to_string(true);
|
248
|
+
//std::cout << sketch2.to_string(true);
|
244
249
|
REQUIRE(bytes.size() == sketch2.get_serialized_size_bytes());
|
245
250
|
REQUIRE(sketch2.is_empty() == sketch.is_empty());
|
246
251
|
REQUIRE(sketch2.is_estimation_mode() == sketch.is_estimation_mode());
|
@@ -277,7 +282,7 @@ TEST_CASE("req sketch: byte serialize-deserialize exact mode", "[req_sketch]") {
|
|
277
282
|
auto bytes = sketch.serialize();
|
278
283
|
REQUIRE(bytes.size() == sketch.get_serialized_size_bytes());
|
279
284
|
auto sketch2 = req_sketch<float>::deserialize(bytes.data(), bytes.size());
|
280
|
-
std::cout << sketch2.to_string(true);
|
285
|
+
//std::cout << sketch2.to_string(true);
|
281
286
|
REQUIRE(bytes.size() == sketch2.get_serialized_size_bytes());
|
282
287
|
REQUIRE(sketch2.is_empty() == sketch.is_empty());
|
283
288
|
REQUIRE(sketch2.is_estimation_mode() == sketch.is_estimation_mode());
|
@@ -480,6 +485,72 @@ TEST_CASE("req sketch: merge incompatible HRA and LRA", "[req_sketch]") {
|
|
480
485
|
REQUIRE_THROWS_AS(sketch1.merge(sketch2), std::invalid_argument);
|
481
486
|
}
|
482
487
|
|
488
|
+
TEST_CASE("req sketch: type conversion - empty", "[req_sketch]") {
|
489
|
+
req_sketch<double> req_double(12);
|
490
|
+
req_sketch<float> req_float(req_double);
|
491
|
+
REQUIRE(req_float.is_empty());
|
492
|
+
REQUIRE(req_float.get_k() == req_double.get_k());
|
493
|
+
REQUIRE(req_float.get_n() == 0);
|
494
|
+
REQUIRE(req_float.get_num_retained() == 0);
|
495
|
+
}
|
496
|
+
|
497
|
+
TEST_CASE("req sketch: type conversion - several levels", "[req_sketch]") {
|
498
|
+
req_sketch<double> req_double(12);
|
499
|
+
for (int i = 0; i < 1000; ++i) req_double.update(static_cast<double>(i));
|
500
|
+
req_sketch<float> req_float(req_double);
|
501
|
+
REQUIRE(!req_float.is_empty());
|
502
|
+
REQUIRE(req_float.get_k() == req_double.get_k());
|
503
|
+
REQUIRE(req_float.get_n() == req_double.get_n());
|
504
|
+
REQUIRE(req_float.get_num_retained() == req_double.get_num_retained());
|
505
|
+
|
506
|
+
auto sv_float = req_float.get_sorted_view(false);
|
507
|
+
auto sv_double = req_double.get_sorted_view(false);
|
508
|
+
auto sv_float_it = sv_float.begin();
|
509
|
+
auto sv_double_it = sv_double.begin();
|
510
|
+
while (sv_float_it != sv_float.end()) {
|
511
|
+
REQUIRE(sv_double_it != sv_double.end());
|
512
|
+
auto float_pair = *sv_float_it;
|
513
|
+
auto double_pair = *sv_double_it;
|
514
|
+
REQUIRE(float_pair.first == Approx(double_pair.first).margin(0.01));
|
515
|
+
REQUIRE(float_pair.second == double_pair.second);
|
516
|
+
++sv_float_it;
|
517
|
+
++sv_double_it;
|
518
|
+
}
|
519
|
+
REQUIRE(sv_double_it == sv_double.end());
|
520
|
+
}
|
521
|
+
|
522
|
+
class A {
|
523
|
+
int val;
|
524
|
+
public:
|
525
|
+
A(int val): val(val) {}
|
526
|
+
int get_val() const { return val; }
|
527
|
+
};
|
528
|
+
|
529
|
+
struct less_A {
|
530
|
+
bool operator()(const A& a1, const A& a2) const { return a1.get_val() < a2.get_val(); }
|
531
|
+
};
|
532
|
+
|
533
|
+
class B {
|
534
|
+
int val;
|
535
|
+
public:
|
536
|
+
explicit B(const A& a): val(a.get_val()) {}
|
537
|
+
int get_val() const { return val; }
|
538
|
+
};
|
539
|
+
|
540
|
+
struct less_B {
|
541
|
+
bool operator()(const B& b1, const B& b2) const { return b1.get_val() < b2.get_val(); }
|
542
|
+
};
|
543
|
+
|
544
|
+
TEST_CASE("req sketch: type conversion - custom types") {
|
545
|
+
req_sketch<A, less_A> sa(4);
|
546
|
+
sa.update(1);
|
547
|
+
sa.update(2);
|
548
|
+
sa.update(3);
|
549
|
+
|
550
|
+
req_sketch<B, less_B> sb(sa);
|
551
|
+
REQUIRE(sb.get_n() == 3);
|
552
|
+
}
|
553
|
+
|
483
554
|
//TEST_CASE("for manual comparison with Java") {
|
484
555
|
// req_sketch<float> sketch(12, false);
|
485
556
|
// for (size_t i = 0; i < 100000; ++i) sketch.update(i);
|
@@ -32,17 +32,13 @@ target_include_directories(sampling
|
|
32
32
|
target_link_libraries(sampling INTERFACE common)
|
33
33
|
target_compile_features(sampling INTERFACE cxx_std_11)
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34
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-
set(sampling_HEADERS "include/var_opt_sketch.hpp;include/var_opt_sketch_impl.hpp")
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-
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install(TARGETS sampling
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EXPORT ${PROJECT_NAME}
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)
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-
install(FILES
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+
install(FILES
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+
include/var_opt_sketch.hpp
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+
include/var_opt_sketch_impl.hpp
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+
include/var_opt_union.hpp
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+
include/var_opt_union_impl.hpp
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DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/DataSketches")
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-
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-
target_sources(sampling
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-
INTERFACE
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-
${CMAKE_CURRENT_SOURCE_DIR}/include/var_opt_sketch.hpp
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-
${CMAKE_CURRENT_SOURCE_DIR}/include/var_opt_sketch_impl.hpp
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-
)
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@@ -58,7 +58,11 @@ namespace var_opt_constants {
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const uint32_t MAX_K = ((uint32_t) 1 << 31) - 2;
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}
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-
template
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+
template<
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typename T,
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+
typename S = serde<T>, // deprecated, to be removed in the next major version
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+
typename A = std::allocator<T>
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+
>
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class var_opt_sketch {
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public:
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@@ -135,18 +139,20 @@ class var_opt_sketch {
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/**
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* Computes size needed to serialize the current state of the sketch.
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* This version is for fixed-size arithmetic types (integral and floating point).
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142
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+
* @param instance of a SerDe
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* @return size in bytes needed to serialize this sketch
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139
144
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*/
|
140
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-
template<typename TT = T, typename std::enable_if<std::is_arithmetic<TT>::value, int>::type = 0>
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141
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-
inline size_t get_serialized_size_bytes() const;
|
145
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+
template<typename TT = T, typename SerDe = S, typename std::enable_if<std::is_arithmetic<TT>::value, int>::type = 0>
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146
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+
inline size_t get_serialized_size_bytes(const SerDe& sd = SerDe()) const;
|
142
147
|
|
143
148
|
/**
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144
149
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* Computes size needed to serialize the current state of the sketch.
|
145
150
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* This version is for all other types and can be expensive since every item needs to be looked at.
|
151
|
+
* @param instance of a SerDe
|
146
152
|
* @return size in bytes needed to serialize this sketch
|
147
153
|
*/
|
148
|
-
template<typename TT = T, typename std::enable_if<!std::is_arithmetic<TT>::value, int>::type = 0>
|
149
|
-
inline size_t get_serialized_size_bytes() const;
|
154
|
+
template<typename TT = T, typename SerDe = S, typename std::enable_if<!std::is_arithmetic<TT>::value, int>::type = 0>
|
155
|
+
inline size_t get_serialized_size_bytes(const SerDe& sd = SerDe()) const;
|
150
156
|
|
151
157
|
// This is a convenience alias for users
|
152
158
|
// The type returned by the following serialize method
|
@@ -158,30 +164,61 @@ class var_opt_sketch {
|
|
158
164
|
* It is a blank space of a given size.
|
159
165
|
* This header is used in Datasketches PostgreSQL extension.
|
160
166
|
* @param header_size_bytes space to reserve in front of the sketch
|
167
|
+
* @param instance of a SerDe
|
161
168
|
*/
|
162
|
-
|
169
|
+
template<typename SerDe = S>
|
170
|
+
vector_bytes serialize(unsigned header_size_bytes = 0, const SerDe& sd = SerDe()) const;
|
163
171
|
|
164
172
|
/**
|
165
173
|
* This method serializes the sketch into a given stream in a binary form
|
166
174
|
* @param os output stream
|
175
|
+
* @param instance of a SerDe
|
167
176
|
*/
|
168
|
-
|
177
|
+
template<typename SerDe = S>
|
178
|
+
void serialize(std::ostream& os, const SerDe& sd = SerDe()) const;
|
169
179
|
|
170
180
|
/**
|
171
181
|
* This method deserializes a sketch from a given stream.
|
172
182
|
* @param is input stream
|
183
|
+
* @param instance of an Allocator
|
173
184
|
* @return an instance of a sketch
|
185
|
+
*
|
186
|
+
* Deprecated, to be removed in the next major version
|
174
187
|
*/
|
175
188
|
static var_opt_sketch deserialize(std::istream& is, const A& allocator = A());
|
176
189
|
|
190
|
+
/**
|
191
|
+
* This method deserializes a sketch from a given stream.
|
192
|
+
* @param is input stream
|
193
|
+
* @param instance of a SerDe
|
194
|
+
* @param instance of an Allocator
|
195
|
+
* @return an instance of a sketch
|
196
|
+
*/
|
197
|
+
template<typename SerDe = S>
|
198
|
+
static var_opt_sketch deserialize(std::istream& is, const SerDe& sd = SerDe(), const A& allocator = A());
|
199
|
+
|
177
200
|
/**
|
178
201
|
* This method deserializes a sketch from a given array of bytes.
|
179
202
|
* @param bytes pointer to the array of bytes
|
180
203
|
* @param size the size of the array
|
204
|
+
* @param instance of an Allocator
|
181
205
|
* @return an instance of a sketch
|
206
|
+
*
|
207
|
+
* Deprecated, to be removed in the next major version
|
182
208
|
*/
|
183
209
|
static var_opt_sketch deserialize(const void* bytes, size_t size, const A& allocator = A());
|
184
210
|
|
211
|
+
/**
|
212
|
+
* This method deserializes a sketch from a given array of bytes.
|
213
|
+
* @param bytes pointer to the array of bytes
|
214
|
+
* @param size the size of the array
|
215
|
+
* @param instance of a SerDe
|
216
|
+
* @param instance of an Allocator
|
217
|
+
* @return an instance of a sketch
|
218
|
+
*/
|
219
|
+
template<typename SerDe = S>
|
220
|
+
static var_opt_sketch deserialize(const void* bytes, size_t size, const SerDe& sd = SerDe(), const A& allocator = A());
|
221
|
+
|
185
222
|
/**
|
186
223
|
* Prints a summary of the sketch.
|
187
224
|
* @return the summary as a string
|