datacite-mapping 0.1.17.2 → 0.2.0

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Files changed (205) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGES.md +33 -0
  3. data/README.md +93 -150
  4. data/datacite-mapping.gemspec +1 -1
  5. data/lib/datacite/mapping.rb +12 -27
  6. data/lib/datacite/mapping/alternate_identifier.rb +2 -0
  7. data/lib/datacite/mapping/contributor.rb +6 -2
  8. data/lib/datacite/mapping/creator.rb +33 -3
  9. data/lib/datacite/mapping/date.rb +28 -76
  10. data/lib/datacite/mapping/date_value.rb +116 -0
  11. data/lib/datacite/mapping/description.rb +9 -8
  12. data/lib/datacite/mapping/funding_reference.rb +20 -5
  13. data/lib/datacite/mapping/geo_location.rb +25 -4
  14. data/lib/datacite/mapping/geo_location_box.rb +10 -8
  15. data/lib/datacite/mapping/geo_location_node.rb +68 -0
  16. data/lib/datacite/mapping/geo_location_point.rb +8 -8
  17. data/lib/datacite/mapping/geo_location_polygon.rb +76 -0
  18. data/lib/datacite/mapping/identifier.rb +23 -11
  19. data/lib/datacite/mapping/module_info.rb +3 -3
  20. data/lib/datacite/mapping/name_identifier.rb +1 -0
  21. data/lib/datacite/mapping/namespace_extensions.rb +12 -0
  22. data/lib/datacite/mapping/read_only_nodes.rb +65 -0
  23. data/lib/datacite/mapping/related_identifier.rb +28 -0
  24. data/lib/datacite/mapping/resource.rb +88 -43
  25. data/lib/datacite/mapping/rights.rb +2 -0
  26. data/lib/datacite/mapping/subject.rb +10 -9
  27. data/lib/datacite/mapping/title.rb +7 -11
  28. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3059p-mrt-datacite.xml +0 -0
  29. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r31017-mrt-datacite.xml +0 -0
  30. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3201j-mrt-datacite.xml +0 -0
  31. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r33w26-mrt-datacite.xml +0 -0
  32. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r34s3v-mrt-datacite.xml +0 -0
  33. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r36p4t-mrt-datacite.xml +0 -0
  34. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r39g6f-mrt-datacite.xml +0 -0
  35. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3cc7d-mrt-datacite.xml +0 -0
  36. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3d59d-mrt-datacite.xml +0 -0
  37. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3f59q-mrt-datacite.xml +0 -0
  38. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3g591-mrt-datacite.xml +0 -0
  39. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3k016-mrt-datacite.xml +0 -0
  40. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3kw2j-mrt-datacite.xml +0 -0
  41. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3mw2v-mrt-datacite.xml +0 -0
  42. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3np4v-mrt-datacite.xml +0 -0
  43. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3pp45-mrt-datacite.xml +0 -0
  44. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3rp4s-mrt-datacite.xml +0 -0
  45. data/spec/data/{dash1-datacite-xml → dash1}/dataone-ark+=c5146=r3tg63-mrt-datacite.xml +0 -0
  46. data/spec/data/{dash1-datacite-xml → dash1}/ucb-ark+=b6078=d1159q-mrt-datacite.xml +0 -0
  47. data/spec/data/{dash1-datacite-xml → dash1}/ucb-ark+=b6078=d17g6j-mrt-datacite.xml +0 -0
  48. data/spec/data/{dash1-datacite-xml → dash1}/ucb-ark+=b6078=d1c88g-mrt-datacite.xml +0 -0
  49. data/spec/data/{dash1-datacite-xml → dash1}/ucb-ark+=b6078=d1cc74-mrt-datacite.xml +0 -0
  50. data/spec/data/{dash1-datacite-xml → dash1}/ucb-ark+=b6078=d1h019-mrt-datacite.xml +0 -0
  51. data/spec/data/{dash1-datacite-xml → dash1}/ucb-ark+=b6078=d1ms3x-mrt-datacite.xml +0 -0
  52. data/spec/data/{dash1-datacite-xml → dash1}/ucb-ark+=b6078=d1mw2k-mrt-datacite.xml +0 -0
  53. data/spec/data/{dash1-datacite-xml → dash1}/ucb-ark+=b6078=d1rg66-mrt-datacite.xml +0 -0
  54. data/spec/data/{dash1-datacite-xml → dash1}/ucb-ark+=b6078=d1rp4h-mrt-datacite.xml +0 -0
  55. data/spec/data/{dash1-datacite-xml → dash1}/ucb-ark+=b6078=d1wc7s-mrt-datacite.xml +0 -0
  56. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1001p-mrt-datacite.xml +0 -0
  57. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1059f-mrt-datacite.xml +0 -0
  58. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d11010-mrt-datacite.xml +0 -0
  59. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1159r-mrt-datacite.xml +0 -0
  60. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d12019-mrt-datacite.xml +0 -0
  61. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d12s30-mrt-datacite.xml +0 -0
  62. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1301m-mrt-datacite.xml +0 -0
  63. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d13s39-mrt-datacite.xml +0 -0
  64. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d13w2z-mrt-datacite.xml +0 -0
  65. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d14s3m-mrt-datacite.xml +0 -0
  66. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d15k5m-mrt-datacite.xml +0 -0
  67. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d15p48-mrt-datacite.xml +0 -0
  68. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d16k5x-mrt-datacite.xml +0 -0
  69. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d16p4k-mrt-datacite.xml +0 -0
  70. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d17g6k-mrt-datacite.xml +0 -0
  71. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d17p4w-mrt-datacite.xml +0 -0
  72. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d18g6w-mrt-datacite.xml +0 -0
  73. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1988w-mrt-datacite.xml +0 -0
  74. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d19g66-mrt-datacite.xml +0 -0
  75. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1b886-mrt-datacite.xml +0 -0
  76. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1bc7v-mrt-datacite.xml +0 -0
  77. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1c88h-mrt-datacite.xml +0 -0
  78. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1cc75-mrt-datacite.xml +0 -0
  79. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1d595-mrt-datacite.xml +0 -0
  80. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1f30c-mrt-datacite.xml +0 -0
  81. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1f59g-mrt-datacite.xml +0 -0
  82. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1g011-mrt-datacite.xml +0 -0
  83. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1g59s-mrt-datacite.xml +0 -0
  84. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1h01b-mrt-datacite.xml +0 -0
  85. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1h593-mrt-datacite.xml +0 -0
  86. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1j01n-mrt-datacite.xml +0 -0
  87. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1js3b-mrt-datacite.xml +0 -0
  88. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1k01z-mrt-datacite.xml +0 -0
  89. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1ks3n-mrt-datacite.xml +0 -0
  90. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1kw29-mrt-datacite.xml +0 -0
  91. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1ms3z-mrt-datacite.xml +0 -0
  92. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1mw2m-mrt-datacite.xml +0 -0
  93. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1np4m-mrt-datacite.xml +0 -0
  94. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1pk58-mrt-datacite.xml +0 -0
  95. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1pp4x-mrt-datacite.xml +0 -0
  96. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1qg6x-mrt-datacite.xml +0 -0
  97. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1qp47-mrt-datacite.xml +0 -0
  98. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1rg67-mrt-datacite.xml +0 -0
  99. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1rp4j-mrt-datacite.xml +0 -0
  100. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1sg6j-mrt-datacite.xml +0 -0
  101. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1t88j-mrt-datacite.xml +0 -0
  102. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1tg6v-mrt-datacite.xml +0 -0
  103. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1v88v-mrt-datacite.xml +0 -0
  104. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1vc7h-mrt-datacite.xml +0 -0
  105. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1w885-mrt-datacite.xml +0 -0
  106. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1wc7t-mrt-datacite.xml +0 -0
  107. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1x59t-mrt-datacite.xml +0 -0
  108. data/spec/data/{dash1-datacite-xml → dash1}/uci-ark+=b7280=d1z594-mrt-datacite.xml +0 -0
  109. data/spec/data/{dash1-datacite-xml → dash1}/ucla-ark+=b5060=d2qr4v2t-mrt-datacite.xml +0 -0
  110. data/spec/data/{dash1-datacite-xml → dash1}/ucla-ark+=b5068=d1cc7x-mrt-datacite.xml +0 -0
  111. data/spec/data/{dash1-datacite-xml → dash1}/ucla-ark+=b5068=d1h59v-mrt-datacite.xml +0 -0
  112. data/spec/data/{dash1-datacite-xml → dash1}/ucla-ark+=b5068=d1rp49-mrt-datacite.xml +0 -0
  113. data/spec/data/{dash1-datacite-xml → dash1}/ucla-ark+=b5068=d1wc7k-mrt-datacite.xml +0 -0
  114. data/spec/data/{dash1-datacite-xml → dash1}/ucm-ark+=13030=m51g217t-mrt-datacite.xml +0 -0
  115. data/spec/data/{dash1-datacite-xml → dash1}/ucm-ark+=b6071=z7wc73-mrt-datacite.xml +0 -0
  116. data/spec/data/{dash1-datacite-xml → dash1}/ucop-ark+=b5060=d8301x-mrt-datacite.xml +0 -0
  117. data/spec/data/{dash1-datacite-xml → dash1}/ucop-ark+=b5060=d86p4w-mrt-datacite.xml +0 -0
  118. data/spec/data/{dash1-datacite-xml → dash1}/ucop-ark+=b5060=d8bc75-mrt-datacite.xml +0 -0
  119. data/spec/data/{dash1-datacite-xml → dash1}/ucop-ark+=b5060=d8g593-mrt-datacite.xml +0 -0
  120. data/spec/data/{dash1-datacite-xml → dash1}/ucop-ark+=b5060=d8h59d-mrt-datacite.xml +0 -0
  121. data/spec/data/{dash1-datacite-xml → dash1}/ucop-ark+=b5060=d8kw2m-mrt-datacite.xml +0 -0
  122. data/spec/data/{dash1-datacite-xml → dash1}/ucop-ark+=b5060=d8rp4v-mrt-datacite.xml +0 -0
  123. data/spec/data/{dash1-datacite-xml → dash1}/ucop-ark+=b5060=d8z59f-mrt-datacite.xml +0 -0
  124. data/spec/data/{dash1-datacite-xml → dash1}/ucsc-ark+=b7291=d11592-mrt-datacite.xml +0 -0
  125. data/spec/data/{dash1-datacite-xml → dash1}/ucsc-ark+=b7291=d17p46-mrt-datacite.xml +0 -0
  126. data/spec/data/{dash1-datacite-xml → dash1}/ucsc-ark+=b7291=d1h59d-mrt-datacite.xml +0 -0
  127. data/spec/data/{dash1-datacite-xml → dash1}/ucsc-ark+=b7291=d1mw2x-mrt-datacite.xml +0 -0
  128. data/spec/data/{dash1-datacite-xml → dash1}/ucsc-ark+=b7291=d1wc74-mrt-datacite.xml +0 -0
  129. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6057cv6-mrt-datacite.xml +0 -0
  130. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6154f00-mrt-datacite.xml +0 -0
  131. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q61z429d-mrt-datacite.xml +0 -0
  132. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q62z13fs-mrt-datacite.xml +0 -0
  133. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q65q4t1r-mrt-datacite.xml +0 -0
  134. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q66q1v54-mrt-datacite.xml +0 -0
  135. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q67p8w9z-mrt-datacite.xml +0 -0
  136. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q68g8hmp-mrt-datacite.xml +0 -0
  137. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6bg2kwf-mrt-datacite.xml +0 -0
  138. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6c8276k-mrt-datacite.xml +0 -0
  139. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6cc0xmh-mrt-datacite.xml +0 -0
  140. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6d798bd-mrt-datacite.xml +0 -0
  141. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6h12zxh-mrt-datacite.xml +0 -0
  142. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6h41pb7-mrt-datacite.xml +0 -0
  143. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6kw5cxv-mrt-datacite.xml +0 -0
  144. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6ms3qnx-mrt-datacite.xml +0 -0
  145. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6mw2f2n-mrt-datacite.xml +0 -0
  146. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6pn93h6-mrt-datacite.xml +0 -0
  147. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6qn64nk-mrt-datacite.xml +0 -0
  148. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6rf5rzx-mrt-datacite.xml +0 -0
  149. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6rn35sz-mrt-datacite.xml +0 -0
  150. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6sf2t3q-mrt-datacite.xml +0 -0
  151. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6td9v7j-mrt-datacite.xml +0 -0
  152. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6w66hpn-mrt-datacite.xml +0 -0
  153. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6x63jt1-mrt-datacite.xml +0 -0
  154. data/spec/data/{dash1-datacite-xml → dash1}/ucsf-ark+=b7272=q6z60kzd-mrt-datacite.xml +0 -0
  155. data/spec/data/datacite-4-synthetic.xml +110 -0
  156. data/spec/data/datacite3/datacite-example-Box_dateCollected_DataCollector-v3.0.xml +46 -0
  157. data/spec/data/datacite3/datacite-example-GeoLocation-v3.0.xml +50 -0
  158. data/spec/data/datacite3/datacite-example-HasMetadata-v3.0.xml +52 -0
  159. data/spec/data/datacite3/datacite-example-ResearchGroup_Methods-v3.0.xml +36 -0
  160. data/spec/data/datacite3/datacite-example-ResourceTypeGeneral_Collection-v3.0.xml +38 -0
  161. data/spec/data/datacite3/datacite-example-complicated-v3.0.xml +48 -0
  162. data/spec/data/datacite3/datacite-example-dataset-v3.0.xml +35 -0
  163. data/spec/data/datacite3/datacite-example-full-v3.1.xml +61 -0
  164. data/spec/data/datacite3/datacite-example-relationTypeIsIdenticalTo-v3.0.xml +48 -0
  165. data/spec/data/datacite3/datacite-example-video-v3.0.xml +26 -0
  166. data/spec/data/datacite3/datacite-example-workflow-v3.0.xml +43 -0
  167. data/spec/data/{metadata.xsd → datacite3/metadata.xsd} +0 -0
  168. data/spec/data/datacite4/datacite-example-Box_dateCollected_DataCollector-v4.0.xml +52 -0
  169. data/spec/data/datacite4/datacite-example-GeoLocation-v4.0.xml +66 -0
  170. data/spec/data/datacite4/datacite-example-HasMetadata-v4.0.xml +62 -0
  171. data/spec/data/datacite4/datacite-example-ResearchGroup_Methods-v4.0.xml +44 -0
  172. data/spec/data/datacite4/datacite-example-ResourceTypeGeneral_Collection-v4.0.xml +52 -0
  173. data/spec/data/datacite4/datacite-example-complicated-v4.0.xml +54 -0
  174. data/spec/data/datacite4/datacite-example-dataset-v4.0.xml +39 -0
  175. data/spec/data/{resource.xml → datacite4/datacite-example-full-v4.0.xml} +14 -4
  176. data/spec/data/{kernel-4.0 → datacite4}/datacite-example-fundingReference-v.4.0.xml +0 -0
  177. data/spec/data/datacite4/datacite-example-relationTypeIsIdenticalTo-v4.0.xml +65 -0
  178. data/spec/data/datacite4/datacite-example-video-v4.0.xml +31 -0
  179. data/spec/data/datacite4/datacite-example-workflow-v4.0.xml +55 -0
  180. data/spec/data/{kernel-4.0 → datacite4}/metadata.xsd +0 -0
  181. data/spec/rspec_custom_matchers.rb +5 -1
  182. data/spec/spec_helper.rb +1 -1
  183. data/spec/unit/datacite/mapping/contributor_spec.rb +7 -0
  184. data/spec/unit/datacite/mapping/creator_spec.rb +92 -0
  185. data/spec/unit/datacite/mapping/date_spec.rb +25 -214
  186. data/spec/unit/datacite/mapping/date_value_spec.rb +143 -0
  187. data/spec/unit/datacite/mapping/description_spec.rb +4 -3
  188. data/spec/unit/datacite/mapping/funding_reference_spec.rb +5 -5
  189. data/spec/unit/datacite/mapping/geo_location_box_spec.rb +0 -36
  190. data/spec/unit/datacite/mapping/geo_location_point_spec.rb +0 -25
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+ <resource xsi:schemaLocation="http://datacite.org/schema/kernel-3 http://schema.datacite.org/meta/kernel-3/metadata.xsd" xmlns="http://datacite.org/schema/kernel-3" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
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+ <identifier identifierType="DOI">10.5072/100044</identifier>
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+ <creators>
5
+ <creator>
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+ <creatorName>Luo, R</creatorName>
7
+ </creator>
8
+ <creator>
9
+ <creatorName>Liu, B</creatorName>
10
+ </creator>
11
+ <creator>
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+ <creatorName>Xie, Y</creatorName>
13
+ </creator>
14
+ <creator>
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+ <creatorName>Li, Z</creatorName>
16
+ </creator>
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+ </creators>
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+ <titles>
19
+ <title>Software and supporting material for "SOAPdenovo2: An empirically improved memory-efficient short read de novo assembly"</title>
20
+ </titles>
21
+ <publisher>GigaScience Database</publisher>
22
+ <publicationYear>2012</publicationYear>
23
+ <subjects>
24
+ <subject>DNA (Genetics)</subject>
25
+ <subject>Computer Program</subject>
26
+ </subjects>
27
+ <dates>
28
+ <date dateType="Available">2012-12-13</date>
29
+ </dates>
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+ <language>eng</language>
31
+ <resourceType resourceTypeGeneral="Workflow">Software</resourceType>
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+ <relatedIdentifiers>
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+ <relatedIdentifier relatedIdentifierType="DOI" relationType="IsReferencedBy">10.5072/2047-217X-1-1</relatedIdentifier>
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+ <relatedIdentifier relatedIdentifierType="DOI" relationType="Compiles">10.5072/100038</relatedIdentifier>
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+ </relatedIdentifiers>
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+ <sizes>
37
+ <size>31 MB</size>
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+ </sizes>
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+ <rightsList><rights rightsURI="http://creativecommons.org/publicdomain/zero/1.0/">CC0 1.0 Universal</rights> </rightsList>
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+ <descriptions>
41
+ <description descriptionType="Abstract">SOAPdenovo2 is the latest de novo genome assembly package from BGI's SOAP (short oligonucleotide analysis package) suite of tools (homepage here: http://soap.genomics.org.cn/). Compared to SOAPdenovo1, this new version has the advantage of a new algorithm design that reduces memory consumption in graph construction, resolves more repeat regions in contig assembly, increases coverage and length in scaffold construction, improves gap closure, and is optimized for large genomes. Using new sequencing data from the YH (Homo sapiens) diploid genome - the first sequenced Han Chinese individual, an updated assembly was produced (see dataset here: doi:10.5524/100038), with the N50 scores for the contig and scaffold being 3-fold and 50-fold longer, respectively, than the first published version. The genome coverage increased from 81.16% to 93.91%, and memory consumption was ~2/3 times lower during the point of largest memory consumption. Benchmarking with Assemblathon1 and GAGE datasets shows that SOAPdenovo2 greatly surpasses its predecessor SOAPdenovo1 and is competitive to other assemblers on both assembly length and accuracy. In order to facilitate readers to repeat and recreate these findings, configured packages with the compressed pipelines containing all of the necessary shell scripts and tools are available from the BGI FTP server (ftp://public.genomics.org.cn/BGI/SOAPdenovo2). The latest version of SOAPdenovo2 is available from Sourceforge: http://soapdenovo2.sourceforge.net/ These pipelines will also soon be made available from our data platform as Galaxy workflows: http://galaxy.cbiit.cuhk.edu.hk/</description>
42
+ </descriptions>
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+ </resource>
@@ -0,0 +1,52 @@
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+ <?xml version="1.0" encoding="UTF-8"?>
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+ <resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
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+ <identifier identifierType="DOI">10.5072/DataCollector_dateCollected_geoLocationBox</identifier>
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+ <creators>
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+ <creator>
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+ <creatorName>Peach, A.</creatorName>
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+ </creator>
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+ </creators>
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+ <titles>
10
+ <title>
11
+ Temperature and Humidity in School Classrooms, Ponhook Lake, N.S., 1961-1962
12
+ </title>
13
+ </titles>
14
+ <publisher>National Research Council Canada</publisher>
15
+ <publicationYear>1963</publicationYear>
16
+ <subjects>
17
+ <subject schemeURI="http://lccn.loc.gov/sh85062931" subjectScheme="LCCN">Temperature</subject>
18
+ <subject schemeURI="http://lccn.loc.gov/sh85133712" subjectScheme="LCCN">Humidity</subject>
19
+ <subject schemeURI="http://lccn.loc.gov/sh88003345" subjectScheme="LCCN">Classrooms</subject>
20
+ <subject>Ponhook Lake (N.S.)</subject>
21
+ </subjects>
22
+ <contributors>
23
+ <contributor contributorType="DataCollector">
24
+ <contributorName>Pomegranate, B.</contributorName>
25
+ </contributor>
26
+ </contributors>
27
+ <dates>
28
+ <date dateType="Collected">1961-06-01/1962-10-12</date>
29
+ </dates>
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+ <language>en</language>
31
+ <resourceType resourceTypeGeneral="Text">report</resourceType>
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+ <sizes>
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+ <size>10 p.</size>
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+ </sizes>
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+ <descriptions>
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+ <description descriptionType="Abstract">
37
+ The Division has been taking records of temperatures and humidities in groups of houses at various locations in Canada over the past several years. This survey has more recently been extended to include schools. Records obtained from classrooms in
38
+ six schools in Ponhook Lake, Nova Scotia from June 1, 1961-October 12, 1962 are now reported.
39
+ </description>
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+ </descriptions>
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+ <geoLocations>
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+ <geoLocation>
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+ <geoLocationPlace>Ponhook Lake, Nova Scotia</geoLocationPlace>
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+ <geoLocationBox>
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+ <westBoundLongitude>-64.2</westBoundLongitude>
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+ <eastBoundLongitude>-63.8</eastBoundLongitude>
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+ <southBoundLatitude>44.7167</southBoundLatitude>
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+ <northBoundLatitude>44.9667</northBoundLatitude>
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+ </geoLocationBox>
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+ </geoLocation>
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+ </geoLocations>
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+ </resource>
@@ -0,0 +1,66 @@
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+ <?xml version="1.0" encoding="UTF-8"?>
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+ <resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
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+ <identifier identifierType="DOI">10.5072/geoPointExample</identifier>
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+ <creators>
5
+ <creator>
6
+ <creatorName>Schumann, Kai</creatorName>
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+ </creator>
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+ <creator>
9
+ <creatorName>Völker, David</creatorName>
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+ </creator>
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+ <creator>
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+ <creatorName>Weinrebe, Wilhelm Reiber</creatorName>
13
+ </creator>
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+ </creators>
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+ <titles>
16
+ <title>
17
+ Gridded results of swath bathymetric mapping of Disko Bay, Western Greenland, 2007-2008
18
+ </title>
19
+ </titles>
20
+ <publisher>
21
+ PANGAEA - Data Publisher for Earth &amp; Environmental Science
22
+ </publisher>
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+ <publicationYear>2011</publicationYear>
24
+ <subjects>
25
+ <subject subjectScheme="DDC">551 Geology, hydrology, meteorology</subject>
26
+ </subjects>
27
+ <contributors>
28
+ <contributor contributorType="HostingInstitution">
29
+ <contributorName>
30
+ IFM-GEOMAR Leibniz-Institute of Marine Sciences, Kiel University
31
+ </contributorName>
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+ </contributor>
33
+ </contributors>
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+ <language>en</language>
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+ <resourceType resourceTypeGeneral="Dataset"/>
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+ <relatedIdentifiers>
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+ <relatedIdentifier relatedIdentifierType="DOI" relationType="Continues">10.5072/timeSeries</relatedIdentifier>
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+ </relatedIdentifiers>
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+ <sizes>
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+ <size>4 datasets</size>
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+ </sizes>
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+ <formats>
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+ <format>application/zip</format>
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+ </formats>
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+ <rightsList>
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+ <rights rightsURI="http://creativecommons.org/licenses/by/3.0/deed">Creative Commons Attribution 3.0 Unported</rights>
47
+ </rightsList>
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+ <descriptions>
49
+ <description descriptionType="Abstract">
50
+ A ship-based acoustic mapping campaign was conducted at the exit of Ilulissat Ice Fjord and in the sedimentary basin of Disko Bay to the west of the fjord mouth. Submarine landscape and sediment distribution patterns are interpreted in terms of
51
+ glaciomarine facies types that are related to variations in the past position of the glacier front. In particular, asymmetric ridges that form a curved entity and a large sill at the fjord mouth may represent moraines hat depict at least two
52
+ relatively stable positions of the ice front in the Disko Bay and at the fjord mouth. In this respect, Ilulissat Glacier shows prominent differences to the East Greenland Kangerlussuaq Glacier which is comparable in present size and present role for
53
+ the ice discharge from the inland ice sheet. Two linear clusters of pockmarks in the center of the sedimentary basin seem to be linked to ongoing methane release due to dissociation of gas hydrates, a process fueled by climate warming in the Arctic
54
+ realm.
55
+ </description>
56
+ </descriptions>
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+ <geoLocations>
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+ <geoLocation>
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+ <geoLocationPlace>Disko Bay</geoLocationPlace>
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+ <geoLocationPoint>
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+ <pointLongitude>-52.000000</pointLongitude>
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+ <pointLatitude>69.000000</pointLatitude>
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+ </geoLocationPoint>
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+ </geoLocation>
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+ </geoLocations>
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+ </resource>
@@ -0,0 +1,62 @@
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+ <?xml version="1.0" encoding="UTF-8"?>
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+ <resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
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+ <identifier identifierType="DOI">10.5072/example</identifier>
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+ <creators>
5
+ <creator>
6
+ <creatorName>Mari, Bernard</creatorName>
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+ </creator>
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+ <creator>
9
+ <creatorName>Puissegur, Marie-Pierre</creatorName>
10
+ </creator>
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+ <creator>
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+ <creatorName>Barbry, Pascal</creatorName>
13
+ </creator>
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+ <creator>
15
+ <creatorName>Lebrigand, Kevin</creatorName>
16
+ </creator>
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+ </creators>
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+ <titles>
19
+ <title>
20
+ Identification of putative novel specific targets of mir-210 in A549 human adenocarcinoma cells
21
+ </title>
22
+ </titles>
23
+ <publisher>
24
+ Institut de Pharmacologie Moleculaire et Cellulaire (IPMC), CNRS UMR6097, Universite de Nice Sophia-Antipolis, 660 route des lucioles, 06560 Valbonne - Sophia-Antipolis, France
25
+ </publisher>
26
+ <publicationYear>2010</publicationYear>
27
+ <subjects>
28
+ <subject schemeURI="http://www.nlm.nih.gov/mesh/meshhome.html" subjectScheme="Mesh">Neoplasms</subject>
29
+ <subject schemeURI="http://purl.obolibrary.org/obo/obi" subjectScheme="OBI">Transcription profiling</subject>
30
+ <subject schemeURI="http://www.ncbi.nlm.nih.gov/Taxonomy/" subjectScheme="NCBITaxon">Homo sapiens</subject>
31
+ <subject schemeURI="http://www.ebi.ac.uk/efo" subjectScheme="Mesh">A549</subject>
32
+ <subject schemeURI="http://purl.obolibrary.org/obo/obi" subjectScheme="OBI">DNA microarray</subject>
33
+ </subjects>
34
+ <contributors>
35
+ <contributor contributorType="HostingInstitution">
36
+ <contributorName>INIST-CNRS</contributorName>
37
+ </contributor>
38
+ </contributors>
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+ <language>eng</language>
40
+ <resourceType resourceTypeGeneral="Text">Experiment report</resourceType>
41
+ <relatedIdentifiers>
42
+ <relatedIdentifier relatedIdentifierType="URL" relatedMetadataScheme="ISA-Tab" relationType="HasMetadata" schemeType="Text" schemeURI="http://isatab.sourceforge.net/docs/ISA-TAB_release-candidate-1_v1.0_24nov08.pdf">http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE18695</relatedIdentifier>
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+ </relatedIdentifiers>
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+ <sizes>
45
+ <size>183 ko</size>
46
+ <size>3 pages</size>
47
+ </sizes>
48
+ <formats>
49
+ <format>PDF</format>
50
+ </formats>
51
+ <rightsList>
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+ <rights rightsURI="http://creativecommons.org/licenses/by-nc-nd/3.0/">
53
+ Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported
54
+ </rights>
55
+ </rightsList>
56
+ <descriptions>
57
+ <description descriptionType="Abstract">
58
+ To identify putative novel specific targets of mir-210, we overexpressed miR-210 as well as miR-34a and a siRNA targeted against E2F3 in A549 human adenocarcinoma cells by transfecting them with synthetic pre-miRNAs or a synthetic negative pre-miRNA
59
+ as control (miR-Neg). RNA samples were harvested at 48 hours post-transfection and 2 independent experiments performed in dye-swap: miR-210 versus miR-Neg ; miR-34a versus miR-Neg ; si-E2F3 versus miR-Neg ; si-control versus miR-Neg.
60
+ </description>
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+ </descriptions>
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+ </resource>
@@ -0,0 +1,44 @@
1
+ <?xml version="1.0" encoding="UTF-8"?>
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+ <resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
3
+ <identifier identifierType="DOI">10.5072/FK25H7QRS</identifier>
4
+ <creators>
5
+ <creator>
6
+ <creatorName>Rizk-Jackson, Angela</creatorName>
7
+ <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0002-1732-8550</nameIdentifier>
8
+ </creator>
9
+ </creators>
10
+ <titles>
11
+ <title>Analysis of ADNI data: Normal to MCI conversion</title>
12
+ </titles>
13
+ <publisher>University of California, San Francisco</publisher>
14
+ <publicationYear>2013</publicationYear>
15
+ <subjects>
16
+ <subject>Aging</subject>
17
+ <subject>Cognition</subject>
18
+ <subject>Risk-factor</subject>
19
+ <subject>Mild Cognitive Impairment</subject>
20
+ <subject>Prediction</subject>
21
+ <subject>Modeling</subject>
22
+ </subjects>
23
+ <contributors>
24
+ <contributor contributorType="ResearchGroup">
25
+ <contributorName>Center for Imaging of Neurodegenerative Disease</contributorName>
26
+ </contributor>
27
+ </contributors>
28
+ <resourceType resourceTypeGeneral="Dataset"/>
29
+ <relatedIdentifiers>
30
+ <relatedIdentifier relatedIdentifierType="DOI" relationType="IsReferencedBy">10.5072/j.jalz.2012.05.911</relatedIdentifier>
31
+ </relatedIdentifiers>
32
+ <descriptions>
33
+ <description descriptionType="Abstract">
34
+ This study replication data resource includes information referencing specific items in the Alzheimer's Disease Neuroimaging Initiative (ADNI) database that were used with the included analysis scripts (R statistical software) to reach conclusions
35
+ presented in the referenced publication (DOI: 10.1016/j.jalz.2012.05.911).
36
+ </description>
37
+ <description descriptionType="Methods">
38
+ Utilizing the ADNI database, we identified 41 individuals who remained stable for 48-months (NC) and 16 who converted to MCI (CNV). Of these 57 subjects, all had available baseline clinical and MRI data, but only 16 NC and 11 CNV had available
39
+ FDG-PET data. Wilcoxon Rank Sum tests assessed baseline demographic and clinical imbalances between CNV and NC. The effect of conversion status on neuroimaging measures at baseline was tested using linear regression modeling. Finally, linear
40
+ discriminant analysis (LDA) models were created using features from an a-priori subset of clinical metrics, MRI measures, and FDG-PET measures obtained at baseline to predict which individuals would later convert to MCI and which would remain stable.
41
+ We used a leave-one-out cross validation strategy and permutation analysis to confirm significance.
42
+ </description>
43
+ </descriptions>
44
+ </resource>
@@ -0,0 +1,52 @@
1
+ <?xml version="1.0" encoding="UTF-8"?>
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+ <resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
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+ <identifier identifierType="DOI">10.5072/1003496</identifier>
4
+ <creators>
5
+ <creator>
6
+ <creatorName>Barton, T.</creatorName>
7
+ </creator>
8
+ <creator>
9
+ <creatorName>Bowler, D.</creatorName>
10
+ </creator>
11
+ </creators>
12
+ <titles>
13
+ <title>
14
+ Archaeological Evaluation, 64 Kenneth Street, Stornoway Isle of Lewis
15
+ </title>
16
+ </titles>
17
+ <publisher>Scottish Urban Archaeological Trust Ltd.</publisher>
18
+ <publicationYear>2008</publicationYear>
19
+ <subjects>
20
+ <subject>Archaeology</subject>
21
+ <subject>Grey Literature</subject>
22
+ </subjects>
23
+ <language>eng</language>
24
+ <resourceType resourceTypeGeneral="Collection">Report</resourceType>
25
+ <alternateIdentifiers>
26
+ <alternateIdentifier alternateIdentifierType="ADS Grey Lit ID">4335</alternateIdentifier>
27
+ <alternateIdentifier alternateIdentifierType="OASIS ID">suatltd1-48159</alternateIdentifier>
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+ </alternateIdentifiers>
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+ <sizes>
30
+ <size>Doc: 46 kb</size>
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+ <size>PDF: 750 kb</size>
32
+ <size>JPG: 700 kb</size>
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+ </sizes>
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+ <formats>
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+ <format>application/msword</format>
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+ <format>application/pdf</format>
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+ <format>image/jpeg</format>
38
+ </formats>
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+ <rightsList>
40
+ <rights rightsURI="http://archaeologydataservice.ac.uk/advice/termsOfUseAndAccess">Terms of Use and Access to ADS Resources</rights>
41
+ </rightsList>
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+ <descriptions>
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+ <description descriptionType="Other">
44
+ Unpublished fieldwork reports (Grey Literature Library)
45
+ </description>
46
+ </descriptions>
47
+ <geoLocations>
48
+ <geoLocation>
49
+ <geoLocationPlace>Stornoway, Western Isles, Scotland</geoLocationPlace>
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+ </geoLocation>
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+ </geoLocations>
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+ </resource>
@@ -0,0 +1,54 @@
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+ <?xml version="1.0" encoding="UTF-8"?>
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+ <identifier identifierType="DOI">10.5072/testpub</identifier>
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+ <creators>
5
+ <creator>
6
+ <creatorName>Smith, John</creatorName>
7
+ </creator>
8
+ <creator>
9
+ <creatorName>つまらないものですが</creatorName>
10
+ <nameIdentifier nameIdentifierScheme="ISNI" schemeURI="http://isni.org/isni/">0000000134596520</nameIdentifier>
11
+ </creator>
12
+ </creators>
13
+ <titles>
14
+ <title>Właściwości rzutowań podprzestrzeniowych</title>
15
+ <title titleType="TranslatedTitle">Translation of Polish titles</title>
16
+ </titles>
17
+ <publisher>Springer</publisher>
18
+ <publicationYear>2010</publicationYear>
19
+ <subjects>
20
+ <subject subjectScheme="DDC">830 German &amp; related literatures</subject>
21
+ <subject>Polish Literature</subject>
22
+ </subjects>
23
+ <contributors>
24
+ <contributor contributorType="DataCollector">
25
+ <contributorName>Doe, John</contributorName>
26
+ <nameIdentifier nameIdentifierScheme="ORCID" schemeURI="http://orcid.org/">0000-0001-5393-1421</nameIdentifier>
27
+ </contributor>
28
+ </contributors>
29
+ <language>GER</language>
30
+ <resourceType resourceTypeGeneral="Text">Monograph</resourceType>
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+ <alternateIdentifier alternateIdentifierType="ISBN">937-0-4523-12357-6</alternateIdentifier>
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+ <relatedIdentifier relatedIdentifierType="DOI" relationType="IsPartOf">10.5272/oldertestpub</relatedIdentifier>
36
+ </relatedIdentifiers>
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+ <sizes>
38
+ <size>256 pages</size>
39
+ </sizes>
40
+ <formats>
41
+ <format>pdf</format>
42
+ </formats>
43
+ <version>2</version>
44
+ <rightsList>
45
+ <rights rightsURI="http://creativecommons.org/licenses/by-nd/2.0/">Creative Commons Attribution-NoDerivs 2.0 Generic</rights>
46
+ </rightsList>
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+ <descriptions>
48
+ <description descriptionType="Abstract">
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+ Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores et ea rebum. Stet clita kasd gubergren, no sea
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+ takimata sanctus est Lorem ipsum dolor sit amet. Lorem ipsum dolor sit amet, consetetur sadipscing elitr, sed diam nonumy eirmod tempor invidunt ut labore et dolore magna aliquyam erat, sed diam voluptua. At vero eos et accusam et justo duo dolores
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+ et ea rebum. Stet clita kasd gubergren, no sea takimata sanctus est Lorem ipsum dolor sit amet.
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+ </description>
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+ </descriptions>
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+ </resource>
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+ <identifier identifierType="DOI">10.5072/D3P26Q35R-Test</identifier>
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+ <creators>
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+ <creator>
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+ <creatorName>Fosmire, Michael</creatorName>
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+ </creator>
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+ <creator>
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+ <creatorName>Wertz, Ruth</creatorName>
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+ </creator>
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+ <creator>
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+ <creatorName>Purzer, Senay</creatorName>
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+ </creator>
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+ </creators>
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+ <titles>
16
+ <title>Critical Engineering Literacy Test (CELT)</title>
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+ </titles>
18
+ <publisher>Purdue University Research Repository (PURR)</publisher>
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+ <publicationYear>2013</publicationYear>
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+ <subjects>
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+ <subject>Assessment</subject>
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+ <subject>Information Literacy</subject>
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+ <subject>Engineering</subject>
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+ <subject>Undergraduate Students</subject>
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+ <subject>CELT</subject>
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+ <subject>Purdue University</subject>
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+ </subjects>
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+ <language>eng</language>
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+ <resourceType resourceTypeGeneral="Dataset">Dataset</resourceType>
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+ <version>1</version>
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+ <descriptions>
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+ <description descriptionType="Abstract">
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+ We developed an instrument, Critical Engineering Literacy Test (CELT), which is a multiple choice instrument designed to measure undergraduate students’ scientific and information literacy skills. It requires students to first read a technical memo
34
+ and, based on the memo’s arguments, answer eight multiple choice and six open-ended response questions. We collected data from 143 first-year engineering students and conducted an item analysis. The KR-20 reliability of the instrument was .39. Item
35
+ difficulties ranged between .17 to .83. The results indicate low reliability index but acceptable levels of item difficulties and item discrimination indices. Students were most challenged when answering items measuring scientific and mathematical
36
+ literacy (i.e., identifying incorrect information).
37
+ </description>
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+ </descriptions>
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+ </resource>
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+ <resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
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  <identifier identifierType="DOI">10.5072/example-full</identifier>
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  <creators>
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5
  <creator>
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6
  <creatorName>Miller, Elizabeth</creatorName>
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+ <givenName>Elizabeth</givenName>
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+ <familyName>Miller</familyName>
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  <nameIdentifier schemeURI="http://orcid.org/" nameIdentifierScheme="ORCID">0000-0001-5000-0007</nameIdentifier>
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  <affiliation>DataCite</affiliation>
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@@ -48,14 +50,22 @@
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  </rightsList>
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  <descriptions>
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  <description xml:lang="en-us" descriptionType="Abstract">
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- XML example of all DataCite Metadata Schema v3.1 properties.
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+ XML example of all DataCite Metadata Schema v4.0 properties.
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