cumo 0.1.0
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- checksums.yaml +7 -0
- data/.gitignore +27 -0
- data/.travis.yml +5 -0
- data/3rd_party/mkmf-cu/.gitignore +36 -0
- data/3rd_party/mkmf-cu/Gemfile +3 -0
- data/3rd_party/mkmf-cu/LICENSE +21 -0
- data/3rd_party/mkmf-cu/README.md +36 -0
- data/3rd_party/mkmf-cu/Rakefile +11 -0
- data/3rd_party/mkmf-cu/bin/mkmf-cu-nvcc +4 -0
- data/3rd_party/mkmf-cu/lib/mkmf-cu.rb +32 -0
- data/3rd_party/mkmf-cu/lib/mkmf-cu/cli.rb +80 -0
- data/3rd_party/mkmf-cu/lib/mkmf-cu/nvcc.rb +157 -0
- data/3rd_party/mkmf-cu/mkmf-cu.gemspec +16 -0
- data/3rd_party/mkmf-cu/test/test_mkmf-cu.rb +67 -0
- data/CODE_OF_CONDUCT.md +46 -0
- data/Gemfile +8 -0
- data/LICENSE.txt +82 -0
- data/README.md +252 -0
- data/Rakefile +43 -0
- data/bench/broadcast_fp32.rb +138 -0
- data/bench/cumo_bench.rb +193 -0
- data/bench/numo_bench.rb +138 -0
- data/bench/reduction_fp32.rb +117 -0
- data/bin/console +14 -0
- data/bin/setup +8 -0
- data/cumo.gemspec +32 -0
- data/ext/cumo/cuda/cublas.c +278 -0
- data/ext/cumo/cuda/driver.c +421 -0
- data/ext/cumo/cuda/memory_pool.cpp +185 -0
- data/ext/cumo/cuda/memory_pool_impl.cpp +308 -0
- data/ext/cumo/cuda/memory_pool_impl.hpp +370 -0
- data/ext/cumo/cuda/memory_pool_impl_test.cpp +554 -0
- data/ext/cumo/cuda/nvrtc.c +207 -0
- data/ext/cumo/cuda/runtime.c +167 -0
- data/ext/cumo/cumo.c +148 -0
- data/ext/cumo/depend.erb +58 -0
- data/ext/cumo/extconf.rb +179 -0
- data/ext/cumo/include/cumo.h +25 -0
- data/ext/cumo/include/cumo/compat.h +23 -0
- data/ext/cumo/include/cumo/cuda/cublas.h +153 -0
- data/ext/cumo/include/cumo/cuda/cumo_thrust.hpp +187 -0
- data/ext/cumo/include/cumo/cuda/cumo_thrust_complex.hpp +79 -0
- data/ext/cumo/include/cumo/cuda/driver.h +22 -0
- data/ext/cumo/include/cumo/cuda/memory_pool.h +28 -0
- data/ext/cumo/include/cumo/cuda/nvrtc.h +22 -0
- data/ext/cumo/include/cumo/cuda/runtime.h +40 -0
- data/ext/cumo/include/cumo/indexer.h +238 -0
- data/ext/cumo/include/cumo/intern.h +142 -0
- data/ext/cumo/include/cumo/intern_fwd.h +38 -0
- data/ext/cumo/include/cumo/intern_kernel.h +6 -0
- data/ext/cumo/include/cumo/narray.h +429 -0
- data/ext/cumo/include/cumo/narray_kernel.h +149 -0
- data/ext/cumo/include/cumo/ndloop.h +95 -0
- data/ext/cumo/include/cumo/reduce_kernel.h +126 -0
- data/ext/cumo/include/cumo/template.h +158 -0
- data/ext/cumo/include/cumo/template_kernel.h +77 -0
- data/ext/cumo/include/cumo/types/bit.h +40 -0
- data/ext/cumo/include/cumo/types/bit_kernel.h +34 -0
- data/ext/cumo/include/cumo/types/complex.h +402 -0
- data/ext/cumo/include/cumo/types/complex_kernel.h +414 -0
- data/ext/cumo/include/cumo/types/complex_macro.h +382 -0
- data/ext/cumo/include/cumo/types/complex_macro_kernel.h +186 -0
- data/ext/cumo/include/cumo/types/dcomplex.h +46 -0
- data/ext/cumo/include/cumo/types/dcomplex_kernel.h +13 -0
- data/ext/cumo/include/cumo/types/dfloat.h +47 -0
- data/ext/cumo/include/cumo/types/dfloat_kernel.h +14 -0
- data/ext/cumo/include/cumo/types/float_def.h +34 -0
- data/ext/cumo/include/cumo/types/float_def_kernel.h +39 -0
- data/ext/cumo/include/cumo/types/float_macro.h +191 -0
- data/ext/cumo/include/cumo/types/float_macro_kernel.h +158 -0
- data/ext/cumo/include/cumo/types/int16.h +24 -0
- data/ext/cumo/include/cumo/types/int16_kernel.h +23 -0
- data/ext/cumo/include/cumo/types/int32.h +24 -0
- data/ext/cumo/include/cumo/types/int32_kernel.h +19 -0
- data/ext/cumo/include/cumo/types/int64.h +24 -0
- data/ext/cumo/include/cumo/types/int64_kernel.h +19 -0
- data/ext/cumo/include/cumo/types/int8.h +24 -0
- data/ext/cumo/include/cumo/types/int8_kernel.h +19 -0
- data/ext/cumo/include/cumo/types/int_macro.h +67 -0
- data/ext/cumo/include/cumo/types/int_macro_kernel.h +48 -0
- data/ext/cumo/include/cumo/types/real_accum.h +486 -0
- data/ext/cumo/include/cumo/types/real_accum_kernel.h +101 -0
- data/ext/cumo/include/cumo/types/robj_macro.h +80 -0
- data/ext/cumo/include/cumo/types/robj_macro_kernel.h +0 -0
- data/ext/cumo/include/cumo/types/robject.h +27 -0
- data/ext/cumo/include/cumo/types/robject_kernel.h +7 -0
- data/ext/cumo/include/cumo/types/scomplex.h +46 -0
- data/ext/cumo/include/cumo/types/scomplex_kernel.h +13 -0
- data/ext/cumo/include/cumo/types/sfloat.h +48 -0
- data/ext/cumo/include/cumo/types/sfloat_kernel.h +14 -0
- data/ext/cumo/include/cumo/types/uint16.h +25 -0
- data/ext/cumo/include/cumo/types/uint16_kernel.h +20 -0
- data/ext/cumo/include/cumo/types/uint32.h +25 -0
- data/ext/cumo/include/cumo/types/uint32_kernel.h +20 -0
- data/ext/cumo/include/cumo/types/uint64.h +25 -0
- data/ext/cumo/include/cumo/types/uint64_kernel.h +20 -0
- data/ext/cumo/include/cumo/types/uint8.h +25 -0
- data/ext/cumo/include/cumo/types/uint8_kernel.h +20 -0
- data/ext/cumo/include/cumo/types/uint_macro.h +58 -0
- data/ext/cumo/include/cumo/types/uint_macro_kernel.h +38 -0
- data/ext/cumo/include/cumo/types/xint_macro.h +169 -0
- data/ext/cumo/include/cumo/types/xint_macro_kernel.h +88 -0
- data/ext/cumo/narray/SFMT-params.h +97 -0
- data/ext/cumo/narray/SFMT-params19937.h +46 -0
- data/ext/cumo/narray/SFMT.c +620 -0
- data/ext/cumo/narray/SFMT.h +167 -0
- data/ext/cumo/narray/array.c +638 -0
- data/ext/cumo/narray/data.c +961 -0
- data/ext/cumo/narray/gen/cogen.rb +56 -0
- data/ext/cumo/narray/gen/cogen_kernel.rb +58 -0
- data/ext/cumo/narray/gen/def/bit.rb +37 -0
- data/ext/cumo/narray/gen/def/dcomplex.rb +39 -0
- data/ext/cumo/narray/gen/def/dfloat.rb +37 -0
- data/ext/cumo/narray/gen/def/int16.rb +36 -0
- data/ext/cumo/narray/gen/def/int32.rb +36 -0
- data/ext/cumo/narray/gen/def/int64.rb +36 -0
- data/ext/cumo/narray/gen/def/int8.rb +36 -0
- data/ext/cumo/narray/gen/def/robject.rb +37 -0
- data/ext/cumo/narray/gen/def/scomplex.rb +39 -0
- data/ext/cumo/narray/gen/def/sfloat.rb +37 -0
- data/ext/cumo/narray/gen/def/uint16.rb +36 -0
- data/ext/cumo/narray/gen/def/uint32.rb +36 -0
- data/ext/cumo/narray/gen/def/uint64.rb +36 -0
- data/ext/cumo/narray/gen/def/uint8.rb +36 -0
- data/ext/cumo/narray/gen/erbpp2.rb +346 -0
- data/ext/cumo/narray/gen/narray_def.rb +268 -0
- data/ext/cumo/narray/gen/spec.rb +425 -0
- data/ext/cumo/narray/gen/tmpl/accum.c +86 -0
- data/ext/cumo/narray/gen/tmpl/accum_binary.c +121 -0
- data/ext/cumo/narray/gen/tmpl/accum_binary_kernel.cu +61 -0
- data/ext/cumo/narray/gen/tmpl/accum_index.c +119 -0
- data/ext/cumo/narray/gen/tmpl/accum_index_kernel.cu +66 -0
- data/ext/cumo/narray/gen/tmpl/accum_kernel.cu +12 -0
- data/ext/cumo/narray/gen/tmpl/alloc_func.c +107 -0
- data/ext/cumo/narray/gen/tmpl/allocate.c +37 -0
- data/ext/cumo/narray/gen/tmpl/aref.c +66 -0
- data/ext/cumo/narray/gen/tmpl/aref_cpu.c +50 -0
- data/ext/cumo/narray/gen/tmpl/aset.c +56 -0
- data/ext/cumo/narray/gen/tmpl/binary.c +162 -0
- data/ext/cumo/narray/gen/tmpl/binary2.c +70 -0
- data/ext/cumo/narray/gen/tmpl/binary2_kernel.cu +15 -0
- data/ext/cumo/narray/gen/tmpl/binary_kernel.cu +31 -0
- data/ext/cumo/narray/gen/tmpl/binary_s.c +45 -0
- data/ext/cumo/narray/gen/tmpl/binary_s_kernel.cu +15 -0
- data/ext/cumo/narray/gen/tmpl/bincount.c +181 -0
- data/ext/cumo/narray/gen/tmpl/cast.c +44 -0
- data/ext/cumo/narray/gen/tmpl/cast_array.c +13 -0
- data/ext/cumo/narray/gen/tmpl/class.c +9 -0
- data/ext/cumo/narray/gen/tmpl/class_kernel.cu +6 -0
- data/ext/cumo/narray/gen/tmpl/clip.c +121 -0
- data/ext/cumo/narray/gen/tmpl/coerce_cast.c +10 -0
- data/ext/cumo/narray/gen/tmpl/complex_accum_kernel.cu +129 -0
- data/ext/cumo/narray/gen/tmpl/cond_binary.c +68 -0
- data/ext/cumo/narray/gen/tmpl/cond_binary_kernel.cu +18 -0
- data/ext/cumo/narray/gen/tmpl/cond_unary.c +46 -0
- data/ext/cumo/narray/gen/tmpl/cum.c +50 -0
- data/ext/cumo/narray/gen/tmpl/each.c +47 -0
- data/ext/cumo/narray/gen/tmpl/each_with_index.c +70 -0
- data/ext/cumo/narray/gen/tmpl/ewcomp.c +79 -0
- data/ext/cumo/narray/gen/tmpl/ewcomp_kernel.cu +19 -0
- data/ext/cumo/narray/gen/tmpl/extract.c +22 -0
- data/ext/cumo/narray/gen/tmpl/extract_cpu.c +26 -0
- data/ext/cumo/narray/gen/tmpl/extract_data.c +53 -0
- data/ext/cumo/narray/gen/tmpl/eye.c +105 -0
- data/ext/cumo/narray/gen/tmpl/eye_kernel.cu +19 -0
- data/ext/cumo/narray/gen/tmpl/fill.c +52 -0
- data/ext/cumo/narray/gen/tmpl/fill_kernel.cu +29 -0
- data/ext/cumo/narray/gen/tmpl/float_accum_kernel.cu +106 -0
- data/ext/cumo/narray/gen/tmpl/format.c +62 -0
- data/ext/cumo/narray/gen/tmpl/format_to_a.c +49 -0
- data/ext/cumo/narray/gen/tmpl/frexp.c +38 -0
- data/ext/cumo/narray/gen/tmpl/gemm.c +203 -0
- data/ext/cumo/narray/gen/tmpl/init_class.c +20 -0
- data/ext/cumo/narray/gen/tmpl/init_module.c +12 -0
- data/ext/cumo/narray/gen/tmpl/inspect.c +21 -0
- data/ext/cumo/narray/gen/tmpl/lib.c +50 -0
- data/ext/cumo/narray/gen/tmpl/lib_kernel.cu +24 -0
- data/ext/cumo/narray/gen/tmpl/logseq.c +102 -0
- data/ext/cumo/narray/gen/tmpl/logseq_kernel.cu +31 -0
- data/ext/cumo/narray/gen/tmpl/map_with_index.c +98 -0
- data/ext/cumo/narray/gen/tmpl/median.c +66 -0
- data/ext/cumo/narray/gen/tmpl/minmax.c +47 -0
- data/ext/cumo/narray/gen/tmpl/module.c +9 -0
- data/ext/cumo/narray/gen/tmpl/module_kernel.cu +1 -0
- data/ext/cumo/narray/gen/tmpl/new_dim0.c +15 -0
- data/ext/cumo/narray/gen/tmpl/new_dim0_kernel.cu +8 -0
- data/ext/cumo/narray/gen/tmpl/poly.c +50 -0
- data/ext/cumo/narray/gen/tmpl/pow.c +97 -0
- data/ext/cumo/narray/gen/tmpl/pow_kernel.cu +29 -0
- data/ext/cumo/narray/gen/tmpl/powint.c +17 -0
- data/ext/cumo/narray/gen/tmpl/qsort.c +212 -0
- data/ext/cumo/narray/gen/tmpl/rand.c +168 -0
- data/ext/cumo/narray/gen/tmpl/rand_norm.c +121 -0
- data/ext/cumo/narray/gen/tmpl/real_accum_kernel.cu +75 -0
- data/ext/cumo/narray/gen/tmpl/seq.c +112 -0
- data/ext/cumo/narray/gen/tmpl/seq_kernel.cu +43 -0
- data/ext/cumo/narray/gen/tmpl/set2.c +57 -0
- data/ext/cumo/narray/gen/tmpl/sort.c +48 -0
- data/ext/cumo/narray/gen/tmpl/sort_index.c +111 -0
- data/ext/cumo/narray/gen/tmpl/store.c +41 -0
- data/ext/cumo/narray/gen/tmpl/store_array.c +187 -0
- data/ext/cumo/narray/gen/tmpl/store_array_kernel.cu +58 -0
- data/ext/cumo/narray/gen/tmpl/store_bit.c +86 -0
- data/ext/cumo/narray/gen/tmpl/store_bit_kernel.cu +66 -0
- data/ext/cumo/narray/gen/tmpl/store_from.c +81 -0
- data/ext/cumo/narray/gen/tmpl/store_from_kernel.cu +58 -0
- data/ext/cumo/narray/gen/tmpl/store_kernel.cu +3 -0
- data/ext/cumo/narray/gen/tmpl/store_numeric.c +9 -0
- data/ext/cumo/narray/gen/tmpl/to_a.c +43 -0
- data/ext/cumo/narray/gen/tmpl/unary.c +132 -0
- data/ext/cumo/narray/gen/tmpl/unary2.c +60 -0
- data/ext/cumo/narray/gen/tmpl/unary_kernel.cu +72 -0
- data/ext/cumo/narray/gen/tmpl/unary_ret2.c +34 -0
- data/ext/cumo/narray/gen/tmpl/unary_s.c +86 -0
- data/ext/cumo/narray/gen/tmpl/unary_s_kernel.cu +58 -0
- data/ext/cumo/narray/gen/tmpl_bit/allocate.c +24 -0
- data/ext/cumo/narray/gen/tmpl_bit/aref.c +54 -0
- data/ext/cumo/narray/gen/tmpl_bit/aref_cpu.c +57 -0
- data/ext/cumo/narray/gen/tmpl_bit/aset.c +56 -0
- data/ext/cumo/narray/gen/tmpl_bit/binary.c +98 -0
- data/ext/cumo/narray/gen/tmpl_bit/bit_count.c +64 -0
- data/ext/cumo/narray/gen/tmpl_bit/bit_count_cpu.c +88 -0
- data/ext/cumo/narray/gen/tmpl_bit/bit_count_kernel.cu +76 -0
- data/ext/cumo/narray/gen/tmpl_bit/bit_reduce.c +133 -0
- data/ext/cumo/narray/gen/tmpl_bit/each.c +48 -0
- data/ext/cumo/narray/gen/tmpl_bit/each_with_index.c +70 -0
- data/ext/cumo/narray/gen/tmpl_bit/extract.c +30 -0
- data/ext/cumo/narray/gen/tmpl_bit/extract_cpu.c +29 -0
- data/ext/cumo/narray/gen/tmpl_bit/fill.c +69 -0
- data/ext/cumo/narray/gen/tmpl_bit/format.c +64 -0
- data/ext/cumo/narray/gen/tmpl_bit/format_to_a.c +51 -0
- data/ext/cumo/narray/gen/tmpl_bit/inspect.c +21 -0
- data/ext/cumo/narray/gen/tmpl_bit/mask.c +136 -0
- data/ext/cumo/narray/gen/tmpl_bit/none_p.c +14 -0
- data/ext/cumo/narray/gen/tmpl_bit/store_array.c +108 -0
- data/ext/cumo/narray/gen/tmpl_bit/store_bit.c +70 -0
- data/ext/cumo/narray/gen/tmpl_bit/store_from.c +60 -0
- data/ext/cumo/narray/gen/tmpl_bit/to_a.c +47 -0
- data/ext/cumo/narray/gen/tmpl_bit/unary.c +81 -0
- data/ext/cumo/narray/gen/tmpl_bit/where.c +90 -0
- data/ext/cumo/narray/gen/tmpl_bit/where2.c +95 -0
- data/ext/cumo/narray/index.c +880 -0
- data/ext/cumo/narray/kwargs.c +153 -0
- data/ext/cumo/narray/math.c +142 -0
- data/ext/cumo/narray/narray.c +1948 -0
- data/ext/cumo/narray/ndloop.c +2105 -0
- data/ext/cumo/narray/rand.c +45 -0
- data/ext/cumo/narray/step.c +474 -0
- data/ext/cumo/narray/struct.c +886 -0
- data/lib/cumo.rb +3 -0
- data/lib/cumo/cuda.rb +11 -0
- data/lib/cumo/cuda/compile_error.rb +36 -0
- data/lib/cumo/cuda/compiler.rb +161 -0
- data/lib/cumo/cuda/device.rb +47 -0
- data/lib/cumo/cuda/link_state.rb +31 -0
- data/lib/cumo/cuda/module.rb +40 -0
- data/lib/cumo/cuda/nvrtc_program.rb +27 -0
- data/lib/cumo/linalg.rb +12 -0
- data/lib/cumo/narray.rb +2 -0
- data/lib/cumo/narray/extra.rb +1278 -0
- data/lib/erbpp.rb +294 -0
- data/lib/erbpp/line_number.rb +137 -0
- data/lib/erbpp/narray_def.rb +381 -0
- data/numo-narray-version +1 -0
- data/run.gdb +7 -0
- metadata +353 -0
data/lib/cumo.rb
ADDED
data/lib/cumo/cuda.rb
ADDED
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module Cumo
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module CUDA
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end
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end
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require_relative 'cuda/compile_error'
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require_relative 'cuda/compiler'
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require_relative 'cuda/device'
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require_relative 'cuda/module'
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require_relative 'cuda/link_state'
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require_relative 'cuda/nvrtc_program'
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require_relative '../cuda'
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module Cumo::CUDA
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class CompileError < StandardError
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def initialize(msg, source, name, options)
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@msg = msg
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@source = source
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@name = name
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@options = options
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end
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def message
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@msg
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end
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def to_s
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@msg
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end
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def dump(io)
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lines = @source.split("\n")
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digits = Math.log10(lines.size).floor + 1
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linum_fmt = "%0#{digits}d "
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io.puts("NVRTC compilation error: #{@msg}")
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io.puts("-----")
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io.puts("Name: #{@name}")
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io.puts("Options: #{@options.join(' ')}")
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io.puts("CUDA source:")
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lines.each.with_index do |line, i|
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io.puts(linum_fmt.sprintf(i + 1) << line.rstrip)
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end
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io.puts("-----")
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io.flush
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end
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end
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end
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require 'tmpdir'
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require 'tempfile'
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require 'fileutils'
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require 'digest/md5'
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require_relative '../cuda'
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module Cumo::CUDA
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class Compiler
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VALID_KERNEL_NAME = /\A[a-zA-Z_][a-zA-Z_0-9]*\z/
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DEFAULT_CACHE_DIR = File.expand_path('~/.cumo/kernel_cache')
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@@empty_file_preprocess_cache ||= {}
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def self.valid_kernel_name?(name)
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VALID_KERNEL_NAME.match?(name)
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end
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def compile_using_nvrtc(source, options: [], arch: nil)
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arch ||= get_arch
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options += ["-arch=#{arch}"]
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Dir.mktmpdir do |root_dir|
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path = File.join(root_dir, 'kern')
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cu_path = "#{path}.cu"
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|
+
File.open(cu_path, 'w') do |cu_file|
|
27
|
+
cu_file.write(source)
|
28
|
+
end
|
29
|
+
|
30
|
+
prog = NVRTCProgram.new(source, name: cu_path)
|
31
|
+
begin
|
32
|
+
ptx = prog.compile(options: options)
|
33
|
+
rescue CompileError => e
|
34
|
+
if get_bool_env_variable('CUMO_DUMP_CUDA_SOURCE_ON_ERROR', false)
|
35
|
+
e.dump($stderr)
|
36
|
+
end
|
37
|
+
raise e
|
38
|
+
ensure
|
39
|
+
prog.destroy
|
40
|
+
end
|
41
|
+
return ptx
|
42
|
+
end
|
43
|
+
end
|
44
|
+
|
45
|
+
def compile_with_cache(source, options: [], arch: nil, cache_dir: nil, extra_source: nil)
|
46
|
+
# NVRTC does not use extra_source. extra_source is used for cache key.
|
47
|
+
cache_dir ||= get_cache_dir
|
48
|
+
arch ||= get_arch
|
49
|
+
|
50
|
+
options += ['-ftz=true']
|
51
|
+
|
52
|
+
env = [arch, options, get_nvrtc_version]
|
53
|
+
base = @@empty_file_preprocess_cache[env]
|
54
|
+
if base.nil?
|
55
|
+
# This is checking of NVRTC compiler internal version
|
56
|
+
base = preprocess('', options, arch)
|
57
|
+
@@empty_file_preprocess_cache[env] = base
|
58
|
+
end
|
59
|
+
key_src = "#{env} #{base} #{source} #{extra_source}"
|
60
|
+
|
61
|
+
key_src.encode!('utf-8')
|
62
|
+
digest = Digest::MD5.hexdigest(key_src)
|
63
|
+
name = "#{digest}_2.cubin"
|
64
|
+
|
65
|
+
unless Dir.exist?(cache_dir)
|
66
|
+
FileUtils.mkdir_p(cache_dir)
|
67
|
+
end
|
68
|
+
|
69
|
+
# TODO(sonots): thread-safe?
|
70
|
+
path = File.join(cache_dir, name)
|
71
|
+
cubin = load_cache(path)
|
72
|
+
if cubin
|
73
|
+
mod = Module.new
|
74
|
+
mod.load(cubin)
|
75
|
+
return mod
|
76
|
+
end
|
77
|
+
|
78
|
+
ptx = compile_using_nvrtc(source, options: options, arch: arch)
|
79
|
+
cubin = nil
|
80
|
+
cubin_hash = nil
|
81
|
+
LinkState.new do |ls|
|
82
|
+
ls.add_ptr_data(ptx, 'cumo.ptx')
|
83
|
+
cubin = ls.complete()
|
84
|
+
cubin_hash = Digest::MD5.hexdigest(cubin)
|
85
|
+
end
|
86
|
+
|
87
|
+
save_cache(path, cubin_hash, cubin)
|
88
|
+
|
89
|
+
# Save .cu source file along with .cubin
|
90
|
+
if get_bool_env_variable('CUMO_CACHE_SAVE_CUDA_SOURCE', false)
|
91
|
+
File.open("#{path}.cu", 'w') do |f|
|
92
|
+
f.write(source)
|
93
|
+
end
|
94
|
+
end
|
95
|
+
|
96
|
+
mod = Module.new
|
97
|
+
mod.load(cubin)
|
98
|
+
return mod
|
99
|
+
end
|
100
|
+
|
101
|
+
private
|
102
|
+
|
103
|
+
def save_cache(path, cubin_hash, cubin)
|
104
|
+
tf = Tempfile.create
|
105
|
+
tf.write(cubin_hash)
|
106
|
+
tf.write(cubin)
|
107
|
+
temp_path = tf.path
|
108
|
+
File.rename(temp_path, path)
|
109
|
+
end
|
110
|
+
|
111
|
+
def load_cache(path)
|
112
|
+
return nil unless File.exist?(path)
|
113
|
+
File.open(path, 'rb') do |file|
|
114
|
+
data = file.read
|
115
|
+
return nil unless data.size >= 32
|
116
|
+
hash = data[0...32]
|
117
|
+
cubin = data[32..-1]
|
118
|
+
cubin_hash = Digest::MD5.hexdigest(cubin)
|
119
|
+
return nil unless hash == cubin_hash
|
120
|
+
return cubin
|
121
|
+
end
|
122
|
+
nil
|
123
|
+
end
|
124
|
+
|
125
|
+
def get_cache_dir
|
126
|
+
ENV.fetch('CUMO_CACHE_DIR', DEFAULT_CACHE_DIR)
|
127
|
+
end
|
128
|
+
|
129
|
+
def get_nvrtc_version
|
130
|
+
@@nvrtc_version ||= NVRTC.nvrtcVersion
|
131
|
+
end
|
132
|
+
|
133
|
+
def get_arch
|
134
|
+
cc = Device.new.compute_capability
|
135
|
+
"compute_#{cc}"
|
136
|
+
end
|
137
|
+
|
138
|
+
def get_bool_env_variable(name, default)
|
139
|
+
val = ENV[name]
|
140
|
+
return default if val.nil? or val.size == 0
|
141
|
+
Integer(val) == 1 rescue false
|
142
|
+
end
|
143
|
+
|
144
|
+
def preprocess(source, options, arch)
|
145
|
+
options += ["-arch=#{arch}"]
|
146
|
+
|
147
|
+
prog = NVRTCProgram.new(source, name: '')
|
148
|
+
begin
|
149
|
+
result = prog.compile(options: options)
|
150
|
+
return result
|
151
|
+
rescue CompileError => e
|
152
|
+
if get_bool_env_variable('CUMO_DUMP_CUDA_SOURCE_ON_ERROR', false)
|
153
|
+
e.dump($stderr)
|
154
|
+
end
|
155
|
+
raise e
|
156
|
+
ensure
|
157
|
+
prog.destroy
|
158
|
+
end
|
159
|
+
end
|
160
|
+
end
|
161
|
+
end
|
@@ -0,0 +1,47 @@
|
|
1
|
+
require_relative '../cuda'
|
2
|
+
|
3
|
+
module Cumo::CUDA
|
4
|
+
class Device
|
5
|
+
attr_reader :id
|
6
|
+
|
7
|
+
def self.get_currend_id
|
8
|
+
Runtime.cudaGetDevice
|
9
|
+
end
|
10
|
+
|
11
|
+
def initialize(device_id = nil)
|
12
|
+
if device_id
|
13
|
+
@id = device_id
|
14
|
+
else
|
15
|
+
@id = Runtime.cudaGetDevice
|
16
|
+
end
|
17
|
+
@_device_stack = []
|
18
|
+
end
|
19
|
+
|
20
|
+
def use
|
21
|
+
Runtime.cudaSetDevice(@id)
|
22
|
+
end
|
23
|
+
|
24
|
+
def with
|
25
|
+
raise unless block_given?
|
26
|
+
prev_id = Runtime.cudaGetDevice
|
27
|
+
@_device_stack << prev_id
|
28
|
+
begin
|
29
|
+
Runtime.cudaSetDevice(@id) unless prev_id != @id
|
30
|
+
yield
|
31
|
+
ensure
|
32
|
+
prev_id = @_device_stack.pop
|
33
|
+
Runtime.cudaSetDevice(prev_id)
|
34
|
+
end
|
35
|
+
end
|
36
|
+
|
37
|
+
def synchronize
|
38
|
+
Runtime.cudaDeviceSynchronize
|
39
|
+
end
|
40
|
+
|
41
|
+
def compute_capability
|
42
|
+
major = Runtime.cudaDeviceGetAttributes(75, @id)
|
43
|
+
minor = Runtime.cudaDeviceGetAttributes(76, @id)
|
44
|
+
"#{major}#{minor}"
|
45
|
+
end
|
46
|
+
end
|
47
|
+
end
|
@@ -0,0 +1,31 @@
|
|
1
|
+
require_relative '../cuda'
|
2
|
+
|
3
|
+
module Cumo::CUDA
|
4
|
+
# CUDA link state.
|
5
|
+
class LinkState
|
6
|
+
def initialize
|
7
|
+
@ptr = Driver.cuLinkCreate
|
8
|
+
if block_given?
|
9
|
+
begin
|
10
|
+
yield(self)
|
11
|
+
ensure
|
12
|
+
destroy
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
|
17
|
+
def destroy
|
18
|
+
return unless @ptr
|
19
|
+
Driver.cuLinkDestroy(@ptr)
|
20
|
+
@ptr = nil
|
21
|
+
end
|
22
|
+
|
23
|
+
def add_ptr_data(data, name)
|
24
|
+
Driver.cuLinkAddData(@ptr, Driver::CU_JIT_INPUT_PTX, data, name)
|
25
|
+
end
|
26
|
+
|
27
|
+
def complete
|
28
|
+
cubin = Driver.cuLinkComplete(@ptr)
|
29
|
+
end
|
30
|
+
end
|
31
|
+
end
|
@@ -0,0 +1,40 @@
|
|
1
|
+
require_relative '../cuda'
|
2
|
+
|
3
|
+
module Cumo::CUDA
|
4
|
+
# CUDA kernel module.
|
5
|
+
class Module
|
6
|
+
def initialize
|
7
|
+
@ptr = nil
|
8
|
+
if block_given?
|
9
|
+
begin
|
10
|
+
yield(self)
|
11
|
+
ensure
|
12
|
+
unload
|
13
|
+
end
|
14
|
+
end
|
15
|
+
end
|
16
|
+
|
17
|
+
def unload
|
18
|
+
return unless @ptr
|
19
|
+
Driver.cuModuleUnload(@ptr)
|
20
|
+
@ptr = nil
|
21
|
+
end
|
22
|
+
|
23
|
+
def load_file(fname)
|
24
|
+
@ptr = Driver.cuModuleLoad(fname)
|
25
|
+
end
|
26
|
+
|
27
|
+
def load(cubin)
|
28
|
+
@ptr = Driver.cuModuleLoadData(cubin)
|
29
|
+
end
|
30
|
+
|
31
|
+
def get_global_var(name)
|
32
|
+
Driver.cuModuleGetGlobal(@ptr, name)
|
33
|
+
end
|
34
|
+
|
35
|
+
def get_function(name)
|
36
|
+
# Function(name)
|
37
|
+
end
|
38
|
+
end
|
39
|
+
end
|
40
|
+
|
@@ -0,0 +1,27 @@
|
|
1
|
+
require_relative '../cuda'
|
2
|
+
require_relative 'compile_error'
|
3
|
+
|
4
|
+
module Cumo::CUDA
|
5
|
+
class NVRTCProgram
|
6
|
+
def initialize(src, name: "default_program", headers: [], include_names: [])
|
7
|
+
@ptr = nil
|
8
|
+
@src = src # should be UTF-8
|
9
|
+
@name = name # should be UTF-8
|
10
|
+
@ptr = NVRTC.nvrtcCreateProgram(src, name, headers, include_names)
|
11
|
+
end
|
12
|
+
|
13
|
+
def destroy
|
14
|
+
NVRTC.nvrtcDestroyProgram(@ptr) if @ptr
|
15
|
+
end
|
16
|
+
|
17
|
+
def compile(options: [])
|
18
|
+
begin
|
19
|
+
NVRTC.nvrtcCompileProgram(@ptr, options)
|
20
|
+
return NVRTC.nvrtcGetPTX(@ptr)
|
21
|
+
rescue NVRTCError => e
|
22
|
+
log = NVRTC.nvrtcGetProgramLog(@ptr)
|
23
|
+
raise CompileError.new(log, @src, @name, options)
|
24
|
+
end
|
25
|
+
end
|
26
|
+
end
|
27
|
+
end
|
data/lib/cumo/linalg.rb
ADDED
data/lib/cumo/narray.rb
ADDED
@@ -0,0 +1,1278 @@
|
|
1
|
+
module Cumo
|
2
|
+
class NArray
|
3
|
+
|
4
|
+
# Return an unallocated array with the same shape and type as self.
|
5
|
+
def new_narray
|
6
|
+
self.class.new(*shape)
|
7
|
+
end
|
8
|
+
|
9
|
+
# Return an array of zeros with the same shape and type as self.
|
10
|
+
def new_zeros
|
11
|
+
self.class.zeros(*shape)
|
12
|
+
end
|
13
|
+
|
14
|
+
# Return an array of ones with the same shape and type as self.
|
15
|
+
def new_ones
|
16
|
+
self.class.ones(*shape)
|
17
|
+
end
|
18
|
+
|
19
|
+
# Return an array filled with value with the same shape and type as self.
|
20
|
+
def new_fill(value)
|
21
|
+
self.class.new(*shape).fill(value)
|
22
|
+
end
|
23
|
+
|
24
|
+
# Convert angles from radians to degrees.
|
25
|
+
def rad2deg
|
26
|
+
self * (180/Math::PI)
|
27
|
+
end
|
28
|
+
|
29
|
+
# Convert angles from degrees to radians.
|
30
|
+
def deg2rad
|
31
|
+
self * (Math::PI/180)
|
32
|
+
end
|
33
|
+
|
34
|
+
# Flip each row in the left/right direction.
|
35
|
+
# Same as `a[true, (-1..0).step(-1), ...]`.
|
36
|
+
def fliplr
|
37
|
+
reverse(1)
|
38
|
+
end
|
39
|
+
|
40
|
+
# Flip each column in the up/down direction.
|
41
|
+
# Same as `a[(-1..0).step(-1), ...]`.
|
42
|
+
def flipud
|
43
|
+
reverse(0)
|
44
|
+
end
|
45
|
+
|
46
|
+
# Multi-dimensional array indexing.
|
47
|
+
# Same as [] for one-dimensional NArray.
|
48
|
+
# Similar to numpy's tuple indexing, i.e., `a[[1,2,..],[3,4,..]]`
|
49
|
+
# (This method will be rewritten in C)
|
50
|
+
# @return [Cumo::NArray] one-dimensional view of self.
|
51
|
+
# @example
|
52
|
+
# p x = Cumo::DFloat.new(3,3,3).seq
|
53
|
+
# # Cumo::DFloat#shape=[3,3,3]
|
54
|
+
# # [[[0, 1, 2],
|
55
|
+
# # [3, 4, 5],
|
56
|
+
# # [6, 7, 8]],
|
57
|
+
# # [[9, 10, 11],
|
58
|
+
# # [12, 13, 14],
|
59
|
+
# # [15, 16, 17]],
|
60
|
+
# # [[18, 19, 20],
|
61
|
+
# # [21, 22, 23],
|
62
|
+
# # [24, 25, 26]]]
|
63
|
+
#
|
64
|
+
# p x.at([0,1,2],[0,1,2],[-1,-2,-3])
|
65
|
+
# # Cumo::DFloat(view)#shape=[3]
|
66
|
+
# # [2, 13, 24]
|
67
|
+
def at(*indices)
|
68
|
+
if indices.size != ndim
|
69
|
+
raise DimensionError, "argument length does not match dimension size"
|
70
|
+
end
|
71
|
+
idx = nil
|
72
|
+
stride = 1
|
73
|
+
(indices.size-1).downto(0) do |i|
|
74
|
+
ix = Int64.cast(indices[i])
|
75
|
+
if ix.ndim != 1
|
76
|
+
raise DimensionError, "index array is not one-dimensional"
|
77
|
+
end
|
78
|
+
ix[ix < 0] += shape[i]
|
79
|
+
if ((ix < 0) & (ix >= shape[i])).any?
|
80
|
+
raise IndexError, "index array is out of range"
|
81
|
+
end
|
82
|
+
if idx
|
83
|
+
if idx.size != ix.size
|
84
|
+
raise ShapeError, "index array sizes mismatch"
|
85
|
+
end
|
86
|
+
idx += ix * stride
|
87
|
+
stride *= shape[i]
|
88
|
+
else
|
89
|
+
idx = ix
|
90
|
+
stride = shape[i]
|
91
|
+
end
|
92
|
+
end
|
93
|
+
self[idx]
|
94
|
+
end
|
95
|
+
|
96
|
+
# Rotate in the plane specified by axes.
|
97
|
+
# @example
|
98
|
+
# p a = Cumo::Int32.new(2,2).seq
|
99
|
+
# # Cumo::Int32#shape=[2,2]
|
100
|
+
# # [[0, 1],
|
101
|
+
# # [2, 3]]
|
102
|
+
#
|
103
|
+
# p a.rot90
|
104
|
+
# # Cumo::Int32(view)#shape=[2,2]
|
105
|
+
# # [[1, 3],
|
106
|
+
# # [0, 2]]
|
107
|
+
#
|
108
|
+
# p a.rot90(2)
|
109
|
+
# # Cumo::Int32(view)#shape=[2,2]
|
110
|
+
# # [[3, 2],
|
111
|
+
# # [1, 0]]
|
112
|
+
#
|
113
|
+
# p a.rot90(3)
|
114
|
+
# # Cumo::Int32(view)#shape=[2,2]
|
115
|
+
# # [[2, 0],
|
116
|
+
# # [3, 1]]
|
117
|
+
def rot90(k=1,axes=[0,1])
|
118
|
+
case k % 4
|
119
|
+
when 0
|
120
|
+
view
|
121
|
+
when 1
|
122
|
+
swapaxes(*axes).reverse(axes[0])
|
123
|
+
when 2
|
124
|
+
reverse(*axes)
|
125
|
+
when 3
|
126
|
+
swapaxes(*axes).reverse(axes[1])
|
127
|
+
end
|
128
|
+
end
|
129
|
+
|
130
|
+
def to_i
|
131
|
+
if size==1
|
132
|
+
self.extract_cpu.to_i
|
133
|
+
else
|
134
|
+
# convert to Int?
|
135
|
+
raise TypeError, "can't convert #{self.class} into Integer"
|
136
|
+
end
|
137
|
+
end
|
138
|
+
|
139
|
+
def to_f
|
140
|
+
if size==1
|
141
|
+
self.extract_cpu.to_f
|
142
|
+
else
|
143
|
+
# convert to DFloat?
|
144
|
+
raise TypeError, "can't convert #{self.class} into Float"
|
145
|
+
end
|
146
|
+
end
|
147
|
+
|
148
|
+
def to_c
|
149
|
+
if size==1
|
150
|
+
Complex(self.extract_cpu)
|
151
|
+
else
|
152
|
+
# convert to DComplex?
|
153
|
+
raise TypeError, "can't convert #{self.class} into Complex"
|
154
|
+
end
|
155
|
+
end
|
156
|
+
|
157
|
+
# Convert the argument to an narray if not an narray.
|
158
|
+
def self.cast(a)
|
159
|
+
a.kind_of?(NArray) ? a : NArray.array_type(a).cast(a)
|
160
|
+
end
|
161
|
+
|
162
|
+
def self.asarray(a)
|
163
|
+
case a
|
164
|
+
when NArray
|
165
|
+
(a.ndim == 0) ? a[:new] : a
|
166
|
+
when Numeric,Range
|
167
|
+
self[a]
|
168
|
+
else
|
169
|
+
cast(a)
|
170
|
+
end
|
171
|
+
end
|
172
|
+
|
173
|
+
# parse matrix like matlab, octave
|
174
|
+
# @example
|
175
|
+
# a = Cumo::DFloat.parse %[
|
176
|
+
# 2 -3 5
|
177
|
+
# 4 9 7
|
178
|
+
# 2 -1 6
|
179
|
+
# ]
|
180
|
+
# => Cumo::DFloat#shape=[3,3]
|
181
|
+
# [[2, -3, 5],
|
182
|
+
# [4, 9, 7],
|
183
|
+
# [2, -1, 6]]
|
184
|
+
|
185
|
+
def self.parse(str, split1d:/\s+/, split2d:/;?$|;/,
|
186
|
+
split3d:/\s*\n(\s*\n)+/m)
|
187
|
+
a = []
|
188
|
+
str.split(split3d).each do |block|
|
189
|
+
b = []
|
190
|
+
#print "b"; p block
|
191
|
+
block.split(split2d).each do |line|
|
192
|
+
#p line
|
193
|
+
line.strip!
|
194
|
+
if !line.empty?
|
195
|
+
c = []
|
196
|
+
line.split(split1d).each do |item|
|
197
|
+
c << eval(item.strip) if !item.empty?
|
198
|
+
end
|
199
|
+
b << c if !c.empty?
|
200
|
+
end
|
201
|
+
end
|
202
|
+
a << b if !b.empty?
|
203
|
+
end
|
204
|
+
if a.size==1
|
205
|
+
self.cast(a[0])
|
206
|
+
else
|
207
|
+
self.cast(a)
|
208
|
+
end
|
209
|
+
end
|
210
|
+
|
211
|
+
# Append values to the end of an narray.
|
212
|
+
# @example
|
213
|
+
# a = Cumo::DFloat[1, 2, 3]
|
214
|
+
# p a.append([[4, 5, 6], [7, 8, 9]])
|
215
|
+
# # Cumo::DFloat#shape=[9]
|
216
|
+
# # [1, 2, 3, 4, 5, 6, 7, 8, 9]
|
217
|
+
#
|
218
|
+
# a = Cumo::DFloat[[1, 2, 3]]
|
219
|
+
# p a.append([[4, 5, 6], [7, 8, 9]],axis:0)
|
220
|
+
# # Cumo::DFloat#shape=[3,3]
|
221
|
+
# # [[1, 2, 3],
|
222
|
+
# # [4, 5, 6],
|
223
|
+
# # [7, 8, 9]]
|
224
|
+
#
|
225
|
+
# a = Cumo::DFloat[[1, 2, 3], [4, 5, 6]]
|
226
|
+
# p a.append([7, 8, 9], axis:0)
|
227
|
+
# # in `append': dimension mismatch (Cumo::NArray::DimensionError)
|
228
|
+
|
229
|
+
def append(other,axis:nil)
|
230
|
+
other = self.class.cast(other)
|
231
|
+
if axis
|
232
|
+
if ndim != other.ndim
|
233
|
+
raise DimensionError, "dimension mismatch"
|
234
|
+
end
|
235
|
+
return concatenate(other,axis:axis)
|
236
|
+
else
|
237
|
+
a = self.class.zeros(size+other.size)
|
238
|
+
a[0...size] = self[true]
|
239
|
+
a[size..-1] = other[true]
|
240
|
+
return a
|
241
|
+
end
|
242
|
+
end
|
243
|
+
|
244
|
+
# Return a new array with sub-arrays along an axis deleted.
|
245
|
+
# If axis is not given, obj is applied to the flattened array.
|
246
|
+
|
247
|
+
# @example
|
248
|
+
# a = Cumo::DFloat[[1,2,3,4], [5,6,7,8], [9,10,11,12]]
|
249
|
+
# p a.delete(1,0)
|
250
|
+
# # Cumo::DFloat(view)#shape=[2,4]
|
251
|
+
# # [[1, 2, 3, 4],
|
252
|
+
# # [9, 10, 11, 12]]
|
253
|
+
#
|
254
|
+
# p a.delete((0..-1).step(2),1)
|
255
|
+
# # Cumo::DFloat(view)#shape=[3,2]
|
256
|
+
# # [[2, 4],
|
257
|
+
# # [6, 8],
|
258
|
+
# # [10, 12]]
|
259
|
+
#
|
260
|
+
# p a.delete([1,3,5])
|
261
|
+
# # Cumo::DFloat(view)#shape=[9]
|
262
|
+
# # [1, 3, 5, 7, 8, 9, 10, 11, 12]
|
263
|
+
|
264
|
+
def delete(indice,axis=nil)
|
265
|
+
if axis
|
266
|
+
bit = Bit.ones(shape[axis])
|
267
|
+
bit[indice] = 0
|
268
|
+
idx = [true]*ndim
|
269
|
+
idx[axis] = bit.where
|
270
|
+
return self[*idx].copy
|
271
|
+
else
|
272
|
+
bit = Bit.ones(size)
|
273
|
+
bit[indice] = 0
|
274
|
+
return self[bit.where].copy
|
275
|
+
end
|
276
|
+
end
|
277
|
+
|
278
|
+
# Insert values along the axis before the indices.
|
279
|
+
# @example
|
280
|
+
# p a = Cumo::DFloat[[1, 2], [3, 4]]
|
281
|
+
# a = Cumo::Int32[[1, 1], [2, 2], [3, 3]]
|
282
|
+
#
|
283
|
+
# p a.insert(1,5)
|
284
|
+
# # Cumo::Int32#shape=[7]
|
285
|
+
# # [1, 5, 1, 2, 2, 3, 3]
|
286
|
+
#
|
287
|
+
# p a.insert(1, 5, axis:1)
|
288
|
+
# # Cumo::Int32#shape=[3,3]
|
289
|
+
# # [[1, 5, 1],
|
290
|
+
# # [2, 5, 2],
|
291
|
+
# # [3, 5, 3]]
|
292
|
+
#
|
293
|
+
# p a.insert([1], [[11],[12],[13]], axis:1)
|
294
|
+
# # Cumo::Int32#shape=[3,3]
|
295
|
+
# # [[1, 11, 1],
|
296
|
+
# # [2, 12, 2],
|
297
|
+
# # [3, 13, 3]]
|
298
|
+
#
|
299
|
+
# p a.insert(1, [11, 12, 13], axis:1)
|
300
|
+
# # Cumo::Int32#shape=[3,3]
|
301
|
+
# # [[1, 11, 1],
|
302
|
+
# # [2, 12, 2],
|
303
|
+
# # [3, 13, 3]]
|
304
|
+
#
|
305
|
+
# p a.insert([1], [11, 12, 13], axis:1)
|
306
|
+
# # Cumo::Int32#shape=[3,5]
|
307
|
+
# # [[1, 11, 12, 13, 1],
|
308
|
+
# # [2, 11, 12, 13, 2],
|
309
|
+
# # [3, 11, 12, 13, 3]]
|
310
|
+
#
|
311
|
+
# p b = a.flatten
|
312
|
+
# # Cumo::Int32(view)#shape=[6]
|
313
|
+
# # [1, 1, 2, 2, 3, 3]
|
314
|
+
#
|
315
|
+
# p b.insert(2,[15,16])
|
316
|
+
# # Cumo::Int32#shape=[8]
|
317
|
+
# # [1, 1, 15, 16, 2, 2, 3, 3]
|
318
|
+
#
|
319
|
+
# p b.insert([2,2],[15,16])
|
320
|
+
# # Cumo::Int32#shape=[8]
|
321
|
+
# # [1, 1, 15, 16, 2, 2, 3, 3]
|
322
|
+
#
|
323
|
+
# p b.insert([2,1],[15,16])
|
324
|
+
# # Cumo::Int32#shape=[8]
|
325
|
+
# # [1, 16, 1, 15, 2, 2, 3, 3]
|
326
|
+
#
|
327
|
+
# p b.insert([2,0,1],[15,16,17])
|
328
|
+
# # Cumo::Int32#shape=[9]
|
329
|
+
# # [16, 1, 17, 1, 15, 2, 2, 3, 3]
|
330
|
+
#
|
331
|
+
# p b.insert(2..3, [15, 16])
|
332
|
+
# # Cumo::Int32#shape=[8]
|
333
|
+
# # [1, 1, 15, 2, 16, 2, 3, 3]
|
334
|
+
#
|
335
|
+
# p b.insert(2, [7.13, 0.5])
|
336
|
+
# # Cumo::Int32#shape=[8]
|
337
|
+
# # [1, 1, 7, 0, 2, 2, 3, 3]
|
338
|
+
#
|
339
|
+
# p x = Cumo::DFloat.new(2,4).seq
|
340
|
+
# # Cumo::DFloat#shape=[2,4]
|
341
|
+
# # [[0, 1, 2, 3],
|
342
|
+
# # [4, 5, 6, 7]]
|
343
|
+
#
|
344
|
+
# p x.insert([1,3],999,axis:1)
|
345
|
+
# # Cumo::DFloat#shape=[2,6]
|
346
|
+
# # [[0, 999, 1, 2, 999, 3],
|
347
|
+
# # [4, 999, 5, 6, 999, 7]]
|
348
|
+
|
349
|
+
def insert(indice,values,axis:nil)
|
350
|
+
if axis
|
351
|
+
values = self.class.asarray(values)
|
352
|
+
nd = values.ndim
|
353
|
+
midx = [:new]*(ndim-nd) + [true]*nd
|
354
|
+
case indice
|
355
|
+
when Numeric
|
356
|
+
midx[-nd-1] = true
|
357
|
+
midx[axis] = :new
|
358
|
+
end
|
359
|
+
values = values[*midx]
|
360
|
+
else
|
361
|
+
values = self.class.asarray(values).flatten
|
362
|
+
end
|
363
|
+
idx = Int64.asarray(indice)
|
364
|
+
nidx = idx.size
|
365
|
+
if nidx == 1
|
366
|
+
nidx = values.shape[axis||0]
|
367
|
+
idx = idx + Int64.new(nidx).seq
|
368
|
+
else
|
369
|
+
sidx = idx.sort_index
|
370
|
+
idx[sidx] += Int64.new(nidx).seq
|
371
|
+
end
|
372
|
+
if axis
|
373
|
+
bit = Bit.ones(shape[axis]+nidx)
|
374
|
+
bit[idx] = 0
|
375
|
+
new_shape = shape
|
376
|
+
new_shape[axis] += nidx
|
377
|
+
a = self.class.zeros(new_shape)
|
378
|
+
mdidx = [true]*ndim
|
379
|
+
mdidx[axis] = bit.where
|
380
|
+
a[*mdidx] = self
|
381
|
+
mdidx[axis] = idx
|
382
|
+
a[*mdidx] = values
|
383
|
+
else
|
384
|
+
bit = Bit.ones(size+nidx)
|
385
|
+
bit[idx] = 0
|
386
|
+
a = self.class.zeros(size+nidx)
|
387
|
+
a[bit.where] = self.flatten
|
388
|
+
a[idx] = values
|
389
|
+
end
|
390
|
+
return a
|
391
|
+
end
|
392
|
+
|
393
|
+
class << self
|
394
|
+
# @example
|
395
|
+
# p a = Cumo::DFloat[[1, 2], [3, 4]]
|
396
|
+
# # Cumo::DFloat#shape=[2,2]
|
397
|
+
# # [[1, 2],
|
398
|
+
# # [3, 4]]
|
399
|
+
#
|
400
|
+
# p b = Cumo::DFloat[[5, 6]]
|
401
|
+
# # Cumo::DFloat#shape=[1,2]
|
402
|
+
# # [[5, 6]]
|
403
|
+
#
|
404
|
+
# p Cumo::NArray.concatenate([a,b],axis:0)
|
405
|
+
# # Cumo::DFloat#shape=[3,2]
|
406
|
+
# # [[1, 2],
|
407
|
+
# # [3, 4],
|
408
|
+
# # [5, 6]]
|
409
|
+
#
|
410
|
+
# p Cumo::NArray.concatenate([a,b.transpose], axis:1)
|
411
|
+
# # Cumo::DFloat#shape=[2,3]
|
412
|
+
# # [[1, 2, 5],
|
413
|
+
# # [3, 4, 6]]
|
414
|
+
|
415
|
+
def concatenate(arrays,axis:0)
|
416
|
+
klass = (self==NArray) ? NArray.array_type(arrays) : self
|
417
|
+
nd = 0
|
418
|
+
arrays = arrays.map do |a|
|
419
|
+
case a
|
420
|
+
when NArray
|
421
|
+
# ok
|
422
|
+
when Numeric
|
423
|
+
a = klass[a]
|
424
|
+
when Array
|
425
|
+
a = klass.cast(a)
|
426
|
+
else
|
427
|
+
raise TypeError,"not Cumo::NArray: #{a.inspect[0..48]}"
|
428
|
+
end
|
429
|
+
if a.ndim > nd
|
430
|
+
nd = a.ndim
|
431
|
+
end
|
432
|
+
a
|
433
|
+
end
|
434
|
+
if axis < 0
|
435
|
+
axis += nd
|
436
|
+
end
|
437
|
+
if axis < 0 || axis >= nd
|
438
|
+
raise ArgumentError,"axis is out of range"
|
439
|
+
end
|
440
|
+
new_shape = nil
|
441
|
+
sum_size = 0
|
442
|
+
arrays.each do |a|
|
443
|
+
a_shape = a.shape
|
444
|
+
if nd != a_shape.size
|
445
|
+
a_shape = [1]*(nd-a_shape.size) + a_shape
|
446
|
+
end
|
447
|
+
sum_size += a_shape.delete_at(axis)
|
448
|
+
if new_shape
|
449
|
+
if new_shape != a_shape
|
450
|
+
raise ShapeError,"shape mismatch"
|
451
|
+
end
|
452
|
+
else
|
453
|
+
new_shape = a_shape
|
454
|
+
end
|
455
|
+
end
|
456
|
+
new_shape.insert(axis,sum_size)
|
457
|
+
result = klass.zeros(*new_shape)
|
458
|
+
lst = 0
|
459
|
+
refs = [true] * nd
|
460
|
+
arrays.each do |a|
|
461
|
+
fst = lst
|
462
|
+
lst = fst + (a.shape[axis-nd]||1)
|
463
|
+
refs[axis] = fst...lst
|
464
|
+
result[*refs] = a
|
465
|
+
end
|
466
|
+
result
|
467
|
+
end
|
468
|
+
|
469
|
+
# Stack arrays vertically (row wise).
|
470
|
+
# @example
|
471
|
+
# a = Cumo::Int32[1,2,3]
|
472
|
+
# b = Cumo::Int32[2,3,4]
|
473
|
+
# p Cumo::NArray.vstack([a,b])
|
474
|
+
# # Cumo::Int32#shape=[2,3]
|
475
|
+
# # [[1, 2, 3],
|
476
|
+
# # [2, 3, 4]]
|
477
|
+
#
|
478
|
+
# a = Cumo::Int32[[1],[2],[3]]
|
479
|
+
# b = Cumo::Int32[[2],[3],[4]]
|
480
|
+
# p Cumo::NArray.vstack([a,b])
|
481
|
+
# # Cumo::Int32#shape=[6,1]
|
482
|
+
# # [[1],
|
483
|
+
# # [2],
|
484
|
+
# # [3],
|
485
|
+
# # [2],
|
486
|
+
# # [3],
|
487
|
+
# # [4]]
|
488
|
+
|
489
|
+
def vstack(arrays)
|
490
|
+
arys = arrays.map do |a|
|
491
|
+
_atleast_2d(cast(a))
|
492
|
+
end
|
493
|
+
concatenate(arys,axis:0)
|
494
|
+
end
|
495
|
+
|
496
|
+
# Stack arrays horizontally (column wise).
|
497
|
+
# @example
|
498
|
+
# a = Cumo::Int32[1,2,3]
|
499
|
+
# b = Cumo::Int32[2,3,4]
|
500
|
+
# p Cumo::NArray.hstack([a,b])
|
501
|
+
# # Cumo::Int32#shape=[6]
|
502
|
+
# # [1, 2, 3, 2, 3, 4]
|
503
|
+
#
|
504
|
+
# a = Cumo::Int32[[1],[2],[3]]
|
505
|
+
# b = Cumo::Int32[[2],[3],[4]]
|
506
|
+
# p Cumo::NArray.hstack([a,b])
|
507
|
+
# # Cumo::Int32#shape=[3,2]
|
508
|
+
# # [[1, 2],
|
509
|
+
# # [2, 3],
|
510
|
+
# # [3, 4]]
|
511
|
+
|
512
|
+
def hstack(arrays)
|
513
|
+
klass = (self==NArray) ? NArray.array_type(arrays) : self
|
514
|
+
nd = 0
|
515
|
+
arys = arrays.map do |a|
|
516
|
+
a = klass.cast(a)
|
517
|
+
nd = a.ndim if a.ndim > nd
|
518
|
+
a
|
519
|
+
end
|
520
|
+
dim = (nd >= 2) ? 1 : 0
|
521
|
+
concatenate(arys,axis:dim)
|
522
|
+
end
|
523
|
+
|
524
|
+
# Stack arrays in depth wise (along third axis).
|
525
|
+
# @example
|
526
|
+
# a = Cumo::Int32[1,2,3]
|
527
|
+
# b = Cumo::Int32[2,3,4]
|
528
|
+
# p Cumo::NArray.dstack([a,b])
|
529
|
+
# # Cumo::Int32#shape=[1,3,2]
|
530
|
+
# # [[[1, 2],
|
531
|
+
# # [2, 3],
|
532
|
+
# # [3, 4]]]
|
533
|
+
#
|
534
|
+
# a = Cumo::Int32[[1],[2],[3]]
|
535
|
+
# b = Cumo::Int32[[2],[3],[4]]
|
536
|
+
# p Cumo::NArray.dstack([a,b])
|
537
|
+
# # Cumo::Int32#shape=[3,1,2]
|
538
|
+
# # [[[1, 2]],
|
539
|
+
# # [[2, 3]],
|
540
|
+
# # [[3, 4]]]
|
541
|
+
|
542
|
+
def dstack(arrays)
|
543
|
+
arys = arrays.map do |a|
|
544
|
+
_atleast_3d(cast(a))
|
545
|
+
end
|
546
|
+
concatenate(arys,axis:2)
|
547
|
+
end
|
548
|
+
|
549
|
+
# Stack 1-d arrays into columns of a 2-d array.
|
550
|
+
# @example
|
551
|
+
# x = Cumo::Int32[1,2,3]
|
552
|
+
# y = Cumo::Int32[2,3,4]
|
553
|
+
# p Cumo::NArray.column_stack([x,y])
|
554
|
+
# # Cumo::Int32#shape=[3,2]
|
555
|
+
# # [[1, 2],
|
556
|
+
# # [2, 3],
|
557
|
+
# # [3, 4]]
|
558
|
+
|
559
|
+
def column_stack(arrays)
|
560
|
+
arys = arrays.map do |a|
|
561
|
+
a = cast(a)
|
562
|
+
case a.ndim
|
563
|
+
when 0; a[:new,:new]
|
564
|
+
when 1; a[true,:new]
|
565
|
+
else; a
|
566
|
+
end
|
567
|
+
end
|
568
|
+
concatenate(arys,axis:1)
|
569
|
+
end
|
570
|
+
|
571
|
+
private
|
572
|
+
# Return an narray with at least two dimension.
|
573
|
+
def _atleast_2d(a)
|
574
|
+
case a.ndim
|
575
|
+
when 0; a[:new,:new]
|
576
|
+
when 1; a[:new,true]
|
577
|
+
else; a
|
578
|
+
end
|
579
|
+
end
|
580
|
+
|
581
|
+
# Return an narray with at least three dimension.
|
582
|
+
def _atleast_3d(a)
|
583
|
+
case a.ndim
|
584
|
+
when 0; a[:new,:new,:new]
|
585
|
+
when 1; a[:new,true,:new]
|
586
|
+
when 2; a[true,true,:new]
|
587
|
+
else; a
|
588
|
+
end
|
589
|
+
end
|
590
|
+
|
591
|
+
end # class << self
|
592
|
+
|
593
|
+
# @example
|
594
|
+
# p a = Cumo::DFloat[[1, 2], [3, 4]]
|
595
|
+
# # Cumo::DFloat#shape=[2,2]
|
596
|
+
# # [[1, 2],
|
597
|
+
# # [3, 4]]
|
598
|
+
#
|
599
|
+
# p b = Cumo::DFloat[[5, 6]]
|
600
|
+
# # Cumo::DFloat#shape=[1,2]
|
601
|
+
# # [[5, 6]]
|
602
|
+
#
|
603
|
+
# p a.concatenate(b,axis:0)
|
604
|
+
# # Cumo::DFloat#shape=[3,2]
|
605
|
+
# # [[1, 2],
|
606
|
+
# # [3, 4],
|
607
|
+
# # [5, 6]]
|
608
|
+
#
|
609
|
+
# p a.concatenate(b.transpose, axis:1)
|
610
|
+
# # Cumo::DFloat#shape=[2,3]
|
611
|
+
# # [[1, 2, 5],
|
612
|
+
# # [3, 4, 6]]
|
613
|
+
|
614
|
+
def concatenate(*arrays,axis:0)
|
615
|
+
axis = check_axis(axis)
|
616
|
+
self_shape = shape
|
617
|
+
self_shape.delete_at(axis)
|
618
|
+
sum_size = shape[axis]
|
619
|
+
arrays.map! do |a|
|
620
|
+
case a
|
621
|
+
when NArray
|
622
|
+
# ok
|
623
|
+
when Numeric
|
624
|
+
a = self.class.new(1).store(a)
|
625
|
+
when Array
|
626
|
+
a = self.class.cast(a)
|
627
|
+
else
|
628
|
+
raise TypeError,"not Cumo::NArray: #{a.inspect[0..48]}"
|
629
|
+
end
|
630
|
+
if a.ndim > ndim
|
631
|
+
raise ShapeError,"dimension mismatch"
|
632
|
+
end
|
633
|
+
a_shape = a.shape
|
634
|
+
sum_size += a_shape.delete_at(axis-ndim) || 1
|
635
|
+
if self_shape != a_shape
|
636
|
+
raise ShapeError,"shape mismatch"
|
637
|
+
end
|
638
|
+
a
|
639
|
+
end
|
640
|
+
self_shape.insert(axis,sum_size)
|
641
|
+
result = self.class.zeros(*self_shape)
|
642
|
+
lst = shape[axis]
|
643
|
+
refs = [true] * ndim
|
644
|
+
refs[axis] = 0...lst
|
645
|
+
result[*refs] = self
|
646
|
+
arrays.each do |a|
|
647
|
+
fst = lst
|
648
|
+
lst = fst + (a.shape[axis-ndim] || 1)
|
649
|
+
refs[axis] = fst...lst
|
650
|
+
result[*refs] = a
|
651
|
+
end
|
652
|
+
result
|
653
|
+
end
|
654
|
+
|
655
|
+
# @example
|
656
|
+
# p x = Cumo::DFloat.new(9).seq
|
657
|
+
# # Cumo::DFloat#shape=[9]
|
658
|
+
# # [0, 1, 2, 3, 4, 5, 6, 7, 8]
|
659
|
+
#
|
660
|
+
# pp x.split(3)
|
661
|
+
# # [Cumo::DFloat(view)#shape=[3]
|
662
|
+
# # [0, 1, 2],
|
663
|
+
# # Cumo::DFloat(view)#shape=[3]
|
664
|
+
# # [3, 4, 5],
|
665
|
+
# # Cumo::DFloat(view)#shape=[3]
|
666
|
+
# # [6, 7, 8]]
|
667
|
+
#
|
668
|
+
# p x = Cumo::DFloat.new(8).seq
|
669
|
+
# # Cumo::DFloat#shape=[8]
|
670
|
+
# # [0, 1, 2, 3, 4, 5, 6, 7]
|
671
|
+
#
|
672
|
+
# pp x.split([3, 5, 6, 10])
|
673
|
+
# # [Cumo::DFloat(view)#shape=[3]
|
674
|
+
# # [0, 1, 2],
|
675
|
+
# # Cumo::DFloat(view)#shape=[2]
|
676
|
+
# # [3, 4],
|
677
|
+
# # Cumo::DFloat(view)#shape=[1]
|
678
|
+
# # [5],
|
679
|
+
# # Cumo::DFloat(view)#shape=[2]
|
680
|
+
# # [6, 7],
|
681
|
+
# # Cumo::DFloat(view)#shape=[0][]]
|
682
|
+
|
683
|
+
def split(indices_or_sections, axis:0)
|
684
|
+
axis = check_axis(axis)
|
685
|
+
size_axis = shape[axis]
|
686
|
+
case indices_or_sections
|
687
|
+
when Integer
|
688
|
+
div_axis, mod_axis = size_axis.divmod(indices_or_sections)
|
689
|
+
refs = [true]*ndim
|
690
|
+
beg_idx = 0
|
691
|
+
mod_axis.times.map do |i|
|
692
|
+
end_idx = beg_idx + div_axis + 1
|
693
|
+
refs[axis] = beg_idx ... end_idx
|
694
|
+
beg_idx = end_idx
|
695
|
+
self[*refs]
|
696
|
+
end +
|
697
|
+
(indices_or_sections-mod_axis).times.map do |i|
|
698
|
+
end_idx = beg_idx + div_axis
|
699
|
+
refs[axis] = beg_idx ... end_idx
|
700
|
+
beg_idx = end_idx
|
701
|
+
self[*refs]
|
702
|
+
end
|
703
|
+
when NArray
|
704
|
+
split(indices_or_sections.to_a,axis:axis)
|
705
|
+
when Array
|
706
|
+
refs = [true]*ndim
|
707
|
+
fst = 0
|
708
|
+
(indices_or_sections + [size_axis]).map do |lst|
|
709
|
+
lst = size_axis if lst > size_axis
|
710
|
+
refs[axis] = (fst < size_axis) ? fst...lst : -1...-1
|
711
|
+
fst = lst
|
712
|
+
self[*refs]
|
713
|
+
end
|
714
|
+
else
|
715
|
+
raise TypeError,"argument must be Integer or Array"
|
716
|
+
end
|
717
|
+
end
|
718
|
+
|
719
|
+
# @example
|
720
|
+
# p x = Cumo::DFloat.new(4,4).seq
|
721
|
+
# # Cumo::DFloat#shape=[4,4]
|
722
|
+
# # [[0, 1, 2, 3],
|
723
|
+
# # [4, 5, 6, 7],
|
724
|
+
# # [8, 9, 10, 11],
|
725
|
+
# # [12, 13, 14, 15]]
|
726
|
+
#
|
727
|
+
# pp x.hsplit(2)
|
728
|
+
# # [Cumo::DFloat(view)#shape=[4,2]
|
729
|
+
# # [[0, 1],
|
730
|
+
# # [4, 5],
|
731
|
+
# # [8, 9],
|
732
|
+
# # [12, 13]],
|
733
|
+
# # Cumo::DFloat(view)#shape=[4,2]
|
734
|
+
# # [[2, 3],
|
735
|
+
# # [6, 7],
|
736
|
+
# # [10, 11],
|
737
|
+
# # [14, 15]]]
|
738
|
+
#
|
739
|
+
# pp x.hsplit([3, 6])
|
740
|
+
# # [Cumo::DFloat(view)#shape=[4,3]
|
741
|
+
# # [[0, 1, 2],
|
742
|
+
# # [4, 5, 6],
|
743
|
+
# # [8, 9, 10],
|
744
|
+
# # [12, 13, 14]],
|
745
|
+
# # Cumo::DFloat(view)#shape=[4,1]
|
746
|
+
# # [[3],
|
747
|
+
# # [7],
|
748
|
+
# # [11],
|
749
|
+
# # [15]],
|
750
|
+
# # Cumo::DFloat(view)#shape=[4,0][]]
|
751
|
+
|
752
|
+
def vsplit(indices_or_sections)
|
753
|
+
split(indices_or_sections, axis:0)
|
754
|
+
end
|
755
|
+
|
756
|
+
def hsplit(indices_or_sections)
|
757
|
+
split(indices_or_sections, axis:1)
|
758
|
+
end
|
759
|
+
|
760
|
+
def dsplit(indices_or_sections)
|
761
|
+
split(indices_or_sections, axis:2)
|
762
|
+
end
|
763
|
+
|
764
|
+
# @example
|
765
|
+
# p a = Cumo::NArray[0,1,2]
|
766
|
+
# # Cumo::Int32#shape=[3]
|
767
|
+
# # [0, 1, 2]
|
768
|
+
#
|
769
|
+
# p a.tile(2)
|
770
|
+
# # Cumo::Int32#shape=[6]
|
771
|
+
# # [0, 1, 2, 0, 1, 2]
|
772
|
+
#
|
773
|
+
# p a.tile(2,2)
|
774
|
+
# # Cumo::Int32#shape=[2,6]
|
775
|
+
# # [[0, 1, 2, 0, 1, 2],
|
776
|
+
# # [0, 1, 2, 0, 1, 2]]
|
777
|
+
#
|
778
|
+
# p a.tile(2,1,2)
|
779
|
+
# # Cumo::Int32#shape=[2,1,6]
|
780
|
+
# # [[[0, 1, 2, 0, 1, 2]],
|
781
|
+
# # [[0, 1, 2, 0, 1, 2]]]
|
782
|
+
#
|
783
|
+
# p b = Cumo::NArray[[1, 2], [3, 4]]
|
784
|
+
# # Cumo::Int32#shape=[2,2]
|
785
|
+
# # [[1, 2],
|
786
|
+
# # [3, 4]]
|
787
|
+
#
|
788
|
+
# p b.tile(2)
|
789
|
+
# # Cumo::Int32#shape=[2,4]
|
790
|
+
# # [[1, 2, 1, 2],
|
791
|
+
# # [3, 4, 3, 4]]
|
792
|
+
#
|
793
|
+
# p b.tile(2,1)
|
794
|
+
# # Cumo::Int32#shape=[4,2]
|
795
|
+
# # [[1, 2],
|
796
|
+
# # [3, 4],
|
797
|
+
# # [1, 2],
|
798
|
+
# # [3, 4]]
|
799
|
+
#
|
800
|
+
# p c = Cumo::NArray[1,2,3,4]
|
801
|
+
# # Cumo::Int32#shape=[4]
|
802
|
+
# # [1, 2, 3, 4]
|
803
|
+
#
|
804
|
+
# p c.tile(4,1)
|
805
|
+
# # Cumo::Int32#shape=[4,4]
|
806
|
+
# # [[1, 2, 3, 4],
|
807
|
+
# # [1, 2, 3, 4],
|
808
|
+
# # [1, 2, 3, 4],
|
809
|
+
# # [1, 2, 3, 4]]
|
810
|
+
|
811
|
+
def tile(*arg)
|
812
|
+
arg.each do |i|
|
813
|
+
if !i.kind_of?(Integer) || i<1
|
814
|
+
raise ArgumentError,"argument should be positive integer"
|
815
|
+
end
|
816
|
+
end
|
817
|
+
ns = arg.size
|
818
|
+
nd = self.ndim
|
819
|
+
shp = self.shape
|
820
|
+
new_shp = []
|
821
|
+
src_shp = []
|
822
|
+
res_shp = []
|
823
|
+
(nd-ns).times do
|
824
|
+
new_shp << 1
|
825
|
+
new_shp << (n = shp.shift)
|
826
|
+
src_shp << :new
|
827
|
+
src_shp << true
|
828
|
+
res_shp << n
|
829
|
+
end
|
830
|
+
(ns-nd).times do
|
831
|
+
new_shp << (m = arg.shift)
|
832
|
+
new_shp << 1
|
833
|
+
src_shp << :new
|
834
|
+
src_shp << :new
|
835
|
+
res_shp << m
|
836
|
+
end
|
837
|
+
[nd,ns].min.times do
|
838
|
+
new_shp << (m = arg.shift)
|
839
|
+
new_shp << (n = shp.shift)
|
840
|
+
src_shp << :new
|
841
|
+
src_shp << true
|
842
|
+
res_shp << n*m
|
843
|
+
end
|
844
|
+
self.class.new(*new_shp).store(self[*src_shp]).reshape(*res_shp)
|
845
|
+
end
|
846
|
+
|
847
|
+
# @example
|
848
|
+
# p Cumo::NArray[3].repeat(4)
|
849
|
+
# # Cumo::Int32#shape=[4]
|
850
|
+
# # [3, 3, 3, 3]
|
851
|
+
#
|
852
|
+
# p x = Cumo::NArray[[1,2],[3,4]]
|
853
|
+
# # Cumo::Int32#shape=[2,2]
|
854
|
+
# # [[1, 2],
|
855
|
+
# # [3, 4]]
|
856
|
+
#
|
857
|
+
# p x.repeat(2)
|
858
|
+
# # Cumo::Int32#shape=[8]
|
859
|
+
# # [1, 1, 2, 2, 3, 3, 4, 4]
|
860
|
+
#
|
861
|
+
# p x.repeat(3,axis:1)
|
862
|
+
# # Cumo::Int32#shape=[2,6]
|
863
|
+
# # [[1, 1, 1, 2, 2, 2],
|
864
|
+
# # [3, 3, 3, 4, 4, 4]]
|
865
|
+
#
|
866
|
+
# p x.repeat([1,2],axis:0)
|
867
|
+
# # Cumo::Int32#shape=[3,2]
|
868
|
+
# # [[1, 2],
|
869
|
+
# # [3, 4],
|
870
|
+
# # [3, 4]]
|
871
|
+
|
872
|
+
def repeat(arg,axis:nil)
|
873
|
+
case axis
|
874
|
+
when Integer
|
875
|
+
axis = check_axis(axis)
|
876
|
+
c = self
|
877
|
+
when NilClass
|
878
|
+
c = self.flatten
|
879
|
+
axis = 0
|
880
|
+
else
|
881
|
+
raise ArgumentError,"invalid axis"
|
882
|
+
end
|
883
|
+
case arg
|
884
|
+
when Integer
|
885
|
+
if !arg.kind_of?(Integer) || arg<1
|
886
|
+
raise ArgumentError,"argument should be positive integer"
|
887
|
+
end
|
888
|
+
idx = c.shape[axis].times.map{|i| [i]*arg}.flatten
|
889
|
+
else
|
890
|
+
arg = arg.to_a
|
891
|
+
if arg.size != c.shape[axis]
|
892
|
+
raise ArgumentError,"repeat size shoud be equal to size along axis"
|
893
|
+
end
|
894
|
+
arg.each do |i|
|
895
|
+
if !i.kind_of?(Integer) || i<0
|
896
|
+
raise ArgumentError,"argument should be non-negative integer"
|
897
|
+
end
|
898
|
+
end
|
899
|
+
idx = arg.each_with_index.map{|a,i| [i]*a}.flatten
|
900
|
+
end
|
901
|
+
ref = [true] * c.ndim
|
902
|
+
ref[axis] = idx
|
903
|
+
c[*ref].copy
|
904
|
+
end
|
905
|
+
|
906
|
+
# Calculate the n-th discrete difference along given axis.
|
907
|
+
# @example
|
908
|
+
# p x = Cumo::DFloat[1, 2, 4, 7, 0]
|
909
|
+
# # Cumo::DFloat#shape=[5]
|
910
|
+
# # [1, 2, 4, 7, 0]
|
911
|
+
#
|
912
|
+
# p x.diff
|
913
|
+
# # Cumo::DFloat#shape=[4]
|
914
|
+
# # [1, 2, 3, -7]
|
915
|
+
#
|
916
|
+
# p x.diff(2)
|
917
|
+
# # Cumo::DFloat#shape=[3]
|
918
|
+
# # [1, 1, -10]
|
919
|
+
#
|
920
|
+
# p x = Cumo::DFloat[[1, 3, 6, 10], [0, 5, 6, 8]]
|
921
|
+
# # Cumo::DFloat#shape=[2,4]
|
922
|
+
# # [[1, 3, 6, 10],
|
923
|
+
# # [0, 5, 6, 8]]
|
924
|
+
#
|
925
|
+
# p x.diff
|
926
|
+
# # Cumo::DFloat#shape=[2,3]
|
927
|
+
# # [[2, 3, 4],
|
928
|
+
# # [5, 1, 2]]
|
929
|
+
#
|
930
|
+
# p x.diff(axis:0)
|
931
|
+
# # Cumo::DFloat#shape=[1,4]
|
932
|
+
# # [[-1, 2, 0, -2]]
|
933
|
+
|
934
|
+
def diff(n=1,axis:-1)
|
935
|
+
axis = check_axis(axis)
|
936
|
+
if n < 0 || n >= shape[axis]
|
937
|
+
raise ShapeError,"n=#{n} is invalid for shape[#{axis}]=#{shape[axis]}"
|
938
|
+
end
|
939
|
+
# calculate polynomial coefficient
|
940
|
+
c = self.class[-1,1]
|
941
|
+
2.upto(n) do |i|
|
942
|
+
x = self.class.zeros(i+1)
|
943
|
+
x[0..-2] = c
|
944
|
+
y = self.class.zeros(i+1)
|
945
|
+
y[1..-1] = c
|
946
|
+
c = y - x
|
947
|
+
end
|
948
|
+
s = [true]*ndim
|
949
|
+
s[axis] = n..-1
|
950
|
+
result = self[*s].dup
|
951
|
+
sum = result.inplace
|
952
|
+
(n-1).downto(0) do |i|
|
953
|
+
s = [true]*ndim
|
954
|
+
s[axis] = i..-n-1+i
|
955
|
+
sum + self[*s] * c[i] # inplace addition
|
956
|
+
end
|
957
|
+
return result
|
958
|
+
end
|
959
|
+
|
960
|
+
|
961
|
+
# Upper triangular matrix.
|
962
|
+
# Return a copy with the elements below the k-th diagonal filled with zero.
|
963
|
+
def triu(k=0)
|
964
|
+
dup.triu!(k)
|
965
|
+
end
|
966
|
+
|
967
|
+
# Upper triangular matrix.
|
968
|
+
# Fill the self elements below the k-th diagonal with zero.
|
969
|
+
def triu!(k=0)
|
970
|
+
if ndim < 2
|
971
|
+
raise NArray::ShapeError, "must be >= 2-dimensional array"
|
972
|
+
end
|
973
|
+
if contiguous?
|
974
|
+
*shp,m,n = shape
|
975
|
+
idx = tril_indices(k-1)
|
976
|
+
reshape!(*shp,m*n)
|
977
|
+
self[false,idx] = 0
|
978
|
+
reshape!(*shp,m,n)
|
979
|
+
else
|
980
|
+
store(triu(k))
|
981
|
+
end
|
982
|
+
end
|
983
|
+
|
984
|
+
# Return the indices for the uppler-triangle on and above the k-th diagonal.
|
985
|
+
def triu_indices(k=0)
|
986
|
+
if ndim < 2
|
987
|
+
raise NArray::ShapeError, "must be >= 2-dimensional array"
|
988
|
+
end
|
989
|
+
m,n = shape[-2..-1]
|
990
|
+
NArray.triu_indices(m,n,k=0)
|
991
|
+
end
|
992
|
+
|
993
|
+
# Return the indices for the uppler-triangle on and above the k-th diagonal.
|
994
|
+
def self.triu_indices(m,n,k=0)
|
995
|
+
x = Cumo::Int64.new(m,1).seq + k
|
996
|
+
y = Cumo::Int64.new(1,n).seq
|
997
|
+
(x<=y).where
|
998
|
+
end
|
999
|
+
|
1000
|
+
# Lower triangular matrix.
|
1001
|
+
# Return a copy with the elements above the k-th diagonal filled with zero.
|
1002
|
+
def tril(k=0)
|
1003
|
+
dup.tril!(k)
|
1004
|
+
end
|
1005
|
+
|
1006
|
+
# Lower triangular matrix.
|
1007
|
+
# Fill the self elements above the k-th diagonal with zero.
|
1008
|
+
def tril!(k=0)
|
1009
|
+
if ndim < 2
|
1010
|
+
raise NArray::ShapeError, "must be >= 2-dimensional array"
|
1011
|
+
end
|
1012
|
+
if contiguous?
|
1013
|
+
idx = triu_indices(k+1)
|
1014
|
+
*shp,m,n = shape
|
1015
|
+
reshape!(*shp,m*n)
|
1016
|
+
self[false,idx] = 0
|
1017
|
+
reshape!(*shp,m,n)
|
1018
|
+
else
|
1019
|
+
store(tril(k))
|
1020
|
+
end
|
1021
|
+
end
|
1022
|
+
|
1023
|
+
# Return the indices for the lower-triangle on and below the k-th diagonal.
|
1024
|
+
def tril_indices(k=0)
|
1025
|
+
if ndim < 2
|
1026
|
+
raise NArray::ShapeError, "must be >= 2-dimensional array"
|
1027
|
+
end
|
1028
|
+
m,n = shape[-2..-1]
|
1029
|
+
NArray.tril_indices(m,n,k)
|
1030
|
+
end
|
1031
|
+
|
1032
|
+
# Return the indices for the lower-triangle on and below the k-th diagonal.
|
1033
|
+
def self.tril_indices(m,n,k=0)
|
1034
|
+
x = Cumo::Int64.new(m,1).seq + k
|
1035
|
+
y = Cumo::Int64.new(1,n).seq
|
1036
|
+
(x>=y).where
|
1037
|
+
end
|
1038
|
+
|
1039
|
+
# Return the k-th diagonal indices.
|
1040
|
+
def diag_indices(k=0)
|
1041
|
+
if ndim < 2
|
1042
|
+
raise NArray::ShapeError, "must be >= 2-dimensional array"
|
1043
|
+
end
|
1044
|
+
m,n = shape[-2..-1]
|
1045
|
+
NArray.diag_indices(m,n,k)
|
1046
|
+
end
|
1047
|
+
|
1048
|
+
# Return the k-th diagonal indices.
|
1049
|
+
def self.diag_indices(m,n,k=0)
|
1050
|
+
x = Cumo::Int64.new(m,1).seq + k
|
1051
|
+
y = Cumo::Int64.new(1,n).seq
|
1052
|
+
(x.eq y).where
|
1053
|
+
end
|
1054
|
+
|
1055
|
+
# Return a matrix whose diagonal is constructed by self along the last axis.
|
1056
|
+
def diag(k=0)
|
1057
|
+
*shp,n = shape
|
1058
|
+
n += k.abs
|
1059
|
+
a = self.class.zeros(*shp,n,n)
|
1060
|
+
a.diagonal(k).store(self)
|
1061
|
+
a
|
1062
|
+
end
|
1063
|
+
|
1064
|
+
# Return the sum along diagonals of the array.
|
1065
|
+
#
|
1066
|
+
# If 2-D array, computes the summation along its diagonal with the
|
1067
|
+
# given offset, i.e., sum of `a[i,i+offset]`.
|
1068
|
+
# If more than 2-D array, the diagonal is determined from the axes
|
1069
|
+
# specified by axis argument. The default is axis=[-2,-1].
|
1070
|
+
# @param offset [Integer] (optional, default=0) diagonal offset
|
1071
|
+
# @param axis [Array] (optional, default=[-2,-1]) diagonal axis
|
1072
|
+
# @param nan [Bool] (optional, default=false) nan-aware algorithm, i.e., if true then it ignores nan.
|
1073
|
+
|
1074
|
+
def trace(offset=nil,axis=nil,nan:false)
|
1075
|
+
diagonal(offset,axis).sum(nan:nan,axis:-1)
|
1076
|
+
end
|
1077
|
+
|
1078
|
+
|
1079
|
+
@@warn_slow_dot = false
|
1080
|
+
|
1081
|
+
# Dot product of two arrays.
|
1082
|
+
# @param b [Cumo::NArray]
|
1083
|
+
# @return [Cumo::NArray] return dot product
|
1084
|
+
|
1085
|
+
def dot(b)
|
1086
|
+
t = self.class::UPCAST[b.class]
|
1087
|
+
if [SFloat, DFloat, SComplex, DComplex].include?(t)
|
1088
|
+
b = self.class.asarray(b)
|
1089
|
+
case self.ndim
|
1090
|
+
when 1
|
1091
|
+
case b.ndim
|
1092
|
+
when 1
|
1093
|
+
self.mulsum(b, axis:-1)
|
1094
|
+
else
|
1095
|
+
self[:new, false].gemm(b).flatten
|
1096
|
+
end
|
1097
|
+
else
|
1098
|
+
case b.ndim
|
1099
|
+
when 1
|
1100
|
+
self.gemm(b[false, :new]).flatten
|
1101
|
+
else
|
1102
|
+
self.gemm(b)
|
1103
|
+
end
|
1104
|
+
end
|
1105
|
+
else
|
1106
|
+
b = self.class.asarray(b)
|
1107
|
+
case b.ndim
|
1108
|
+
when 1
|
1109
|
+
mulsum(b, axis:-1)
|
1110
|
+
else
|
1111
|
+
case ndim
|
1112
|
+
when 0
|
1113
|
+
b.mulsum(self, axis:-2)
|
1114
|
+
when 1
|
1115
|
+
self[true,:new].mulsum(b, axis:-2)
|
1116
|
+
else
|
1117
|
+
unless @@warn_slow_dot
|
1118
|
+
nx = 200
|
1119
|
+
ns = 200000
|
1120
|
+
am,an = shape[-2..-1]
|
1121
|
+
bm,bn = b.shape[-2..-1]
|
1122
|
+
if am > nx && an > nx && bm > nx && bn > nx &&
|
1123
|
+
size > ns && b.size > ns
|
1124
|
+
@@warn_slow_dot = true
|
1125
|
+
warn "\nwarning: matrix dot for #{t} is slow. Consider SFloat, DFloat, SComplex, or DComplex to use cuBLAS.\n\n"
|
1126
|
+
end
|
1127
|
+
end
|
1128
|
+
self[false,:new].mulsum(b[false,:new,true,true], axis:-2)
|
1129
|
+
end
|
1130
|
+
end
|
1131
|
+
end
|
1132
|
+
end
|
1133
|
+
|
1134
|
+
# Inner product of two arrays.
|
1135
|
+
# Same as `(a*b).sum(axis:-1)`.
|
1136
|
+
# @param b [Cumo::NArray]
|
1137
|
+
# @param axis [Integer] applied axis
|
1138
|
+
# @return [Cumo::NArray] return (a*b).sum(axis:axis)
|
1139
|
+
|
1140
|
+
def inner(b, axis:-1)
|
1141
|
+
mulsum(b, axis:axis)
|
1142
|
+
end
|
1143
|
+
|
1144
|
+
# Outer product of two arrays.
|
1145
|
+
# Same as `self[false,:new] * b[false,:new,true]`.
|
1146
|
+
#
|
1147
|
+
# @param b [Cumo::NArray]
|
1148
|
+
# @param axis [Integer] applied axis (default=-1)
|
1149
|
+
# @return [Cumo::NArray] return outer product
|
1150
|
+
# @example
|
1151
|
+
# a = Cumo::DFloat.ones(5)
|
1152
|
+
# => Cumo::DFloat#shape=[5]
|
1153
|
+
# [1, 1, 1, 1, 1]
|
1154
|
+
# b = Cumo::DFloat.linspace(-2,2,5)
|
1155
|
+
# => Cumo::DFloat#shape=[5]
|
1156
|
+
# [-2, -1, 0, 1, 2]
|
1157
|
+
# a.outer(b)
|
1158
|
+
# => Cumo::DFloat#shape=[5,5]
|
1159
|
+
# [[-2, -1, 0, 1, 2],
|
1160
|
+
# [-2, -1, 0, 1, 2],
|
1161
|
+
# [-2, -1, 0, 1, 2],
|
1162
|
+
# [-2, -1, 0, 1, 2],
|
1163
|
+
# [-2, -1, 0, 1, 2]]
|
1164
|
+
|
1165
|
+
def outer(b, axis:nil)
|
1166
|
+
b = NArray.cast(b)
|
1167
|
+
if axis.nil?
|
1168
|
+
self[false,:new] * ((b.ndim==0) ? b : b[false,:new,true])
|
1169
|
+
else
|
1170
|
+
md,nd = [ndim,b.ndim].minmax
|
1171
|
+
axis = check_axis(axis) - nd
|
1172
|
+
if axis < -md
|
1173
|
+
raise ArgumentError,"axis=#{axis} is out of range"
|
1174
|
+
end
|
1175
|
+
adim = [true]*ndim
|
1176
|
+
adim[axis+ndim+1,0] = :new
|
1177
|
+
bdim = [true]*b.ndim
|
1178
|
+
bdim[axis+b.ndim,0] = :new
|
1179
|
+
self[*adim] * b[*bdim]
|
1180
|
+
end
|
1181
|
+
end
|
1182
|
+
|
1183
|
+
# Kronecker product of two arrays.
|
1184
|
+
#
|
1185
|
+
# kron(a,b)[k_0, k_1, ...] = a[i_0, i_1, ...] * b[j_0, j_1, ...]
|
1186
|
+
# where: k_n = i_n * b.shape[n] + j_n
|
1187
|
+
#
|
1188
|
+
# @param b [Cumo::NArray]
|
1189
|
+
# @return [Cumo::NArray] return Kronecker product
|
1190
|
+
# @example
|
1191
|
+
# Cumo::DFloat[1,10,100].kron([5,6,7])
|
1192
|
+
# => Cumo::DFloat#shape=[9]
|
1193
|
+
# [5, 6, 7, 50, 60, 70, 500, 600, 700]
|
1194
|
+
# Cumo::DFloat[5,6,7].kron([1,10,100])
|
1195
|
+
# => Cumo::DFloat#shape=[9]
|
1196
|
+
# [5, 50, 500, 6, 60, 600, 7, 70, 700]
|
1197
|
+
# Cumo::DFloat.eye(2).kron(Cumo::DFloat.ones(2,2))
|
1198
|
+
# => Cumo::DFloat#shape=[4,4]
|
1199
|
+
# [[1, 1, 0, 0],
|
1200
|
+
# [1, 1, 0, 0],
|
1201
|
+
# [0, 0, 1, 1],
|
1202
|
+
# [0, 0, 1, 1]]
|
1203
|
+
|
1204
|
+
def kron(b)
|
1205
|
+
b = NArray.cast(b)
|
1206
|
+
nda = ndim
|
1207
|
+
ndb = b.ndim
|
1208
|
+
shpa = shape
|
1209
|
+
shpb = b.shape
|
1210
|
+
adim = [:new]*(2*[ndb-nda,0].max) + [true,:new]*nda
|
1211
|
+
bdim = [:new]*(2*[nda-ndb,0].max) + [:new,true]*ndb
|
1212
|
+
shpr = (-[nda,ndb].max..-1).map{|i| (shpa[i]||1) * (shpb[i]||1)}
|
1213
|
+
(self[*adim] * b[*bdim]).reshape(*shpr)
|
1214
|
+
end
|
1215
|
+
|
1216
|
+
|
1217
|
+
# under construction
|
1218
|
+
def cov(y=nil, ddof:1, fweights:nil, aweights:nil)
|
1219
|
+
if y
|
1220
|
+
m = NArray.vstack([self,y])
|
1221
|
+
else
|
1222
|
+
m = self
|
1223
|
+
end
|
1224
|
+
w = nil
|
1225
|
+
if fweights
|
1226
|
+
f = fweights
|
1227
|
+
w = f
|
1228
|
+
end
|
1229
|
+
if aweights
|
1230
|
+
a = aweights
|
1231
|
+
w = w ? w*a : a
|
1232
|
+
end
|
1233
|
+
if w
|
1234
|
+
w_sum = w.sum(axis:-1, keepdims:true)
|
1235
|
+
if ddof == 0
|
1236
|
+
fact = w_sum
|
1237
|
+
elsif aweights.nil?
|
1238
|
+
fact = w_sum - ddof
|
1239
|
+
else
|
1240
|
+
wa_sum = (w*a).sum(axis:-1, keepdims:true)
|
1241
|
+
fact = w_sum - ddof * wa_sum / w_sum
|
1242
|
+
end
|
1243
|
+
if (fact <= 0).any?
|
1244
|
+
raise StandardError,"Degrees of freedom <= 0 for slice"
|
1245
|
+
end
|
1246
|
+
else
|
1247
|
+
fact = m.shape[-1] - ddof
|
1248
|
+
end
|
1249
|
+
if w
|
1250
|
+
m -= (m*w).sum(axis:-1, keepdims:true) / w_sum
|
1251
|
+
mw = m*w
|
1252
|
+
else
|
1253
|
+
m -= m.mean(axis:-1, keepdims:true)
|
1254
|
+
mw = m
|
1255
|
+
end
|
1256
|
+
mt = (m.ndim < 2) ? m : m.swapaxes(-2,-1)
|
1257
|
+
mw.dot(mt.conj) / fact
|
1258
|
+
end
|
1259
|
+
|
1260
|
+
private
|
1261
|
+
|
1262
|
+
# @!visibility private
|
1263
|
+
def check_axis(axis)
|
1264
|
+
unless Integer===axis
|
1265
|
+
raise ArgumentError,"axis=#{axis} must be Integer"
|
1266
|
+
end
|
1267
|
+
a = axis
|
1268
|
+
if a < 0
|
1269
|
+
a += ndim
|
1270
|
+
end
|
1271
|
+
if a < 0 || a >= ndim
|
1272
|
+
raise ArgumentError,"axis=#{axis} is invalid"
|
1273
|
+
end
|
1274
|
+
a
|
1275
|
+
end
|
1276
|
+
|
1277
|
+
end
|
1278
|
+
end
|