cqm-parsers 0.2.4 → 2.0.0
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- checksums.yaml +5 -5
- data/Gemfile +8 -4
- data/README.md +44 -5
- data/Rakefile +1 -0
- data/lib/ext/data_element.rb +1 -1
- data/lib/hqmf-parser.rb +13 -45
- data/lib/hqmf-parser/2.0/document.rb +1 -1
- data/lib/hqmf-parser/cql/document_helpers/doc_population_helper.rb +6 -1
- data/lib/measure-loader/cql_loader.rb +165 -0
- data/lib/measure-loader/elm_dependency_finder.rb +72 -0
- data/lib/measure-loader/elm_parser.rb +67 -0
- data/lib/measure-loader/exceptions.rb +10 -0
- data/lib/measure-loader/helpers.rb +11 -0
- data/lib/measure-loader/hqmf_measure_loader.rb +170 -0
- data/lib/measure-loader/mat_measure_files.rb +138 -0
- data/lib/measure-loader/source_data_criteria_loader.rb +65 -0
- data/lib/measure-loader/value_set_helpers.rb +68 -0
- data/lib/measure-loader/vsac_value_set_loader.rb +97 -0
- data/lib/util/util.rb +23 -0
- data/lib/util/vsac_api.rb +164 -101
- metadata +47 -129
- data/lib/ext/code.rb +0 -10
- data/lib/qrda-export/catI-r5/_code.mustache +0 -1
- data/lib/qrda-export/catI-r5/_codes.mustache +0 -10
- data/lib/qrda-export/catI-r5/_header.mustache +0 -28
- data/lib/qrda-export/catI-r5/_measure_section.mustache +0 -59
- data/lib/qrda-export/catI-r5/_reporting_period.mustache +0 -23
- data/lib/qrda-export/catI-r5/_values.mustache +0 -10
- data/lib/qrda-export/catI-r5/qrda1_r5.mustache +0 -137
- data/lib/qrda-export/catI-r5/qrda1_r5.rb +0 -125
- data/lib/qrda-export/catI-r5/qrda_header/_author.mustache +0 -24
- data/lib/qrda-export/catI-r5/qrda_header/_custodian.mustache +0 -43
- data/lib/qrda-export/catI-r5/qrda_header/_documentation_of_service_event.mustache +0 -82
- data/lib/qrda-export/catI-r5/qrda_header/_information_recipient.mustache +0 -7
- data/lib/qrda-export/catI-r5/qrda_header/_legal_authenticator.mustache +0 -25
- data/lib/qrda-export/catI-r5/qrda_header/_participant.mustache +0 -7
- data/lib/qrda-export/catI-r5/qrda_header/_record_target.mustache +0 -28
- data/lib/qrda-export/catI-r5/qrda_templates/adverse_event.mustache +0 -28
- data/lib/qrda-export/catI-r5/qrda_templates/allergy_intolerance.mustache +0 -28
- data/lib/qrda-export/catI-r5/qrda_templates/assessment_performed.mustache +0 -25
- data/lib/qrda-export/catI-r5/qrda_templates/communication_from_patient_to_provider.mustache +0 -29
- data/lib/qrda-export/catI-r5/qrda_templates/communication_from_provider_to_patient.mustache +0 -24
- data/lib/qrda-export/catI-r5/qrda_templates/communication_from_provider_to_provider.mustache +0 -31
- data/lib/qrda-export/catI-r5/qrda_templates/device_applied.mustache +0 -32
- data/lib/qrda-export/catI-r5/qrda_templates/device_ordered.mustache +0 -31
- data/lib/qrda-export/catI-r5/qrda_templates/diagnosis.mustache +0 -38
- data/lib/qrda-export/catI-r5/qrda_templates/diagnostic_study_ordered.mustache +0 -19
- data/lib/qrda-export/catI-r5/qrda_templates/diagnostic_study_performed.mustache +0 -32
- data/lib/qrda-export/catI-r5/qrda_templates/encounter_ordered.mustache +0 -24
- data/lib/qrda-export/catI-r5/qrda_templates/encounter_performed.mustache +0 -40
- data/lib/qrda-export/catI-r5/qrda_templates/immunization_administered.mustache +0 -29
- data/lib/qrda-export/catI-r5/qrda_templates/insurance_provider.mustache +0 -11
- data/lib/qrda-export/catI-r5/qrda_templates/intervention_ordered.mustache +0 -18
- data/lib/qrda-export/catI-r5/qrda_templates/intervention_performed.mustache +0 -25
- data/lib/qrda-export/catI-r5/qrda_templates/lab_test_ordered.mustache +0 -18
- data/lib/qrda-export/catI-r5/qrda_templates/lab_test_performed.mustache +0 -22
- data/lib/qrda-export/catI-r5/qrda_templates/medication_active.mustache +0 -35
- data/lib/qrda-export/catI-r5/qrda_templates/medication_administered.mustache +0 -31
- data/lib/qrda-export/catI-r5/qrda_templates/medication_discharge.mustache +0 -55
- data/lib/qrda-export/catI-r5/qrda_templates/medication_dispensed.mustache +0 -39
- data/lib/qrda-export/catI-r5/qrda_templates/medication_ordered.mustache +0 -38
- data/lib/qrda-export/catI-r5/qrda_templates/patient_characteristic_expired.mustache +0 -16
- data/lib/qrda-export/catI-r5/qrda_templates/physical_exam_performed.mustache +0 -25
- data/lib/qrda-export/catI-r5/qrda_templates/procedure_ordered.mustache +0 -19
- data/lib/qrda-export/catI-r5/qrda_templates/procedure_performed.mustache +0 -44
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_admission_source.mustache +0 -6
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_anatomical_location_site.mustache +0 -1
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_author.mustache +0 -7
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_author_participation.mustache +0 -7
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_component.mustache +0 -11
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_encounter_diagnosis.mustache +0 -19
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_encounter_facility_location.mustache +0 -16
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_mediation_frequency.mustache +0 -3
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_medication_details.mustache +0 -11
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_ordinality.mustache +0 -1
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_principal_diagnosis.mustache +0 -8
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_reason.mustache +0 -12
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_related_to.mustache +0 -6
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_results.mustache +0 -19
- data/lib/qrda-export/catI-r5/qrda_templates/template_partials/_severity.mustache +0 -8
- data/lib/qrda-export/helper/cat_1_view_helper.rb +0 -150
- data/lib/qrda-export/helper/code_system_helper.rb +0 -77
- data/lib/qrda-export/helper/date_helper.rb +0 -89
- data/lib/qrda-import/base-importers/demographics_importer.rb +0 -49
- data/lib/qrda-import/base-importers/medication_importer.rb +0 -23
- data/lib/qrda-import/base-importers/section_importer.rb +0 -203
- data/lib/qrda-import/cda_identifier.rb +0 -19
- data/lib/qrda-import/data-element-importers/adverse_event_importer.rb +0 -24
- data/lib/qrda-import/data-element-importers/allergy_intolerance_importer.rb +0 -22
- data/lib/qrda-import/data-element-importers/assessment_performed_importer.rb +0 -26
- data/lib/qrda-import/data-element-importers/communication_from_patient_to_provider_importer.rb +0 -20
- data/lib/qrda-import/data-element-importers/communication_from_provider_to_patient_importer.rb +0 -20
- data/lib/qrda-import/data-element-importers/communication_from_provider_to_provider_importer.rb +0 -22
- data/lib/qrda-import/data-element-importers/device_applied_importer.rb +0 -26
- data/lib/qrda-import/data-element-importers/device_order_importer.rb +0 -21
- data/lib/qrda-import/data-element-importers/diagnosis_importer.rb +0 -24
- data/lib/qrda-import/data-element-importers/diagnostic_study_order_importer.rb +0 -23
- data/lib/qrda-import/data-element-importers/diagnostic_study_performed_importer.rb +0 -33
- data/lib/qrda-import/data-element-importers/encounter_order_importer.rb +0 -23
- data/lib/qrda-import/data-element-importers/encounter_performed_importer.rb +0 -42
- data/lib/qrda-import/data-element-importers/immunization_administered_importer.rb +0 -20
- data/lib/qrda-import/data-element-importers/intervention_order_importer.rb +0 -21
- data/lib/qrda-import/data-element-importers/intervention_performed_importer.rb +0 -25
- data/lib/qrda-import/data-element-importers/laboratory_test_order_importer.rb +0 -23
- data/lib/qrda-import/data-element-importers/laboratory_test_performed_importer.rb +0 -31
- data/lib/qrda-import/data-element-importers/medication_active_importer.rb +0 -17
- data/lib/qrda-import/data-element-importers/medication_administered_importer.rb +0 -19
- data/lib/qrda-import/data-element-importers/medication_discharge_importer.rb +0 -19
- data/lib/qrda-import/data-element-importers/medication_dispensed_importer.rb +0 -19
- data/lib/qrda-import/data-element-importers/medication_order_importer.rb +0 -18
- data/lib/qrda-import/data-element-importers/patient_characteristic_expired.rb +0 -22
- data/lib/qrda-import/data-element-importers/physical_exam_performed_importer.rb +0 -29
- data/lib/qrda-import/data-element-importers/procedure_order_importer.rb +0 -29
- data/lib/qrda-import/data-element-importers/procedure_performed_importer.rb +0 -37
- data/lib/qrda-import/data-element-importers/substance_administered_importer.rb +0 -17
- data/lib/qrda-import/entry_finder.rb +0 -20
- data/lib/qrda-import/entry_package.rb +0 -16
- data/lib/qrda-import/narrative_reference_handler.rb +0 -33
- data/lib/qrda-import/patient_importer.rb +0 -111
@@ -1,24 +0,0 @@
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module QRDA
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module Cat1
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class AdverseEventImporter < SectionImporter
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def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.146']"))
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super(entry_finder)
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@id_xpath = './cda:id'
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@code_xpath = './cda:entryRelationship/cda:observation/cda:value'
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@author_datetime_xpath = './cda:author/cda:time'
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@relevant_period_xpath = './cda:effectiveTime'
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@severity_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.22.4.8']/cda:value"
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@facility_xpath = "./cda:participant[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.100']"
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@entry_class = QDM::AdverseEvent
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end
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def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
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adverse_event = super
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adverse_event.severity = code_if_present(entry_element.at_xpath(@severity_xpath))
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extract_facility(entry_element, adverse_event)
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adverse_event
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end
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end
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end
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end
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module QRDA
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module Cat1
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class AllergyIntoleranceImporter < SectionImporter
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def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.147']"))
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super(entry_finder)
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@id_xpath = './cda:id'
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@code_xpath = './cda:participant/cda:participantRole/cda:playingEntity/cda:code'
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@author_datetime_xpath = "./cda:author/cda:time"
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@prevalence_period_xpath = "./cda:effectiveTime"
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@severity_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.22.4.8']/cda:value"
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@entry_class = QDM::AllergyIntolerance
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end
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def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
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allergy_intolerance = super
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allergy_intolerance.severity = code_if_present(entry_element.at_xpath(@severity_xpath))
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allergy_intolerance
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end
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end
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end
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end
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module QRDA
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module Cat1
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class AssessmentPerformedImporter < SectionImporter
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def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.144']"))
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super(entry_finder)
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@id_xpath = './cda:id'
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@code_xpath = './cda:code'
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@author_datetime_xpath = "./cda:author/cda:time"
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@result_xpath = "./cda:value"
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@method_xpath = './cda:methodCode'
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@components_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.149']"
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@reason_xpath = "./cda:entryRelationship[@typeCode='RSON']/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.88']/cda:value"
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@entry_class = QDM::AssessmentPerformed
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end
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def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
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assessment_performed = super
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assessment_performed.method = code_if_present(entry_element.at_xpath(@method_xpath))
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assessment_performed.components = extract_components(entry_element)
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assessment_performed.reason = extract_reason(entry_element)
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assessment_performed
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end
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end
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end
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end
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data/lib/qrda-import/data-element-importers/communication_from_patient_to_provider_importer.rb
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module QRDA
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module Cat1
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class CommunicationFromPatientToProviderImporter < SectionImporter
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def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.2']"))
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super(entry_finder)
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@entry_does_not_have_reason = true
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@id_xpath = './cda:id'
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@code_xpath = './cda:code'
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@author_datetime_xpath = "./cda:author/cda:time"
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@entry_class = QDM::CommunicationFromPatientToProvider
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end
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def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
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communication_from_patient_to_provider = super
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communication_from_patient_to_provider
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end
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end
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end
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end
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data/lib/qrda-import/data-element-importers/communication_from_provider_to_patient_importer.rb
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module QRDA
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module Cat1
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class CommunicationFromProviderToPatientImporter < SectionImporter
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def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.3']"))
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super(entry_finder)
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@entry_does_not_have_reason = true
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@id_xpath = './cda:id'
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@code_xpath = './cda:code'
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@author_datetime_xpath = "./cda:author/cda:time"
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@entry_class = QDM::CommunicationFromProviderToPatient
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end
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def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
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communication_from_provider_to_patient = super
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communication_from_provider_to_patient
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end
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end
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end
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end
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data/lib/qrda-import/data-element-importers/communication_from_provider_to_provider_importer.rb
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module QRDA
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module Cat1
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class CommunicationFromProviderToProviderImporter < SectionImporter
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def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.4']"))
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super(entry_finder)
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@entry_does_not_have_reason = true
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@id_xpath = './cda:id'
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@code_xpath = './cda:code'
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@author_datetime_xpath = "./cda:author/cda:time"
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@related_to_xpath = "./sdtc:inFulfillmentOf1/sdtc:actReference"
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@entry_class = QDM::CommunicationFromProviderToProvider
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end
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def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
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communication_from_provider_to_provider = super
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communication_from_provider_to_provider.relatedTo = extract_related_to(entry_element)
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communication_from_provider_to_provider
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end
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end
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end
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end
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module QRDA
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module Cat1
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class DeviceAppliedImporter < SectionImporter
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def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:procedure[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.7']"))
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super(entry_finder)
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@id_xpath = './cda:id'
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@code_xpath = './cda:participant/cda:participantRole/cda:playingDevice/cda:code'
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@author_datetime_xpath = "./cda:author/cda:time"
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@relevant_period_xpath = "./cda:effectiveTime"
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@anatomical_location_site_xpath = "./cda:targetSiteCode"
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@anatomical_approach_site_xpath = "./cda:approachSiteCode"
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@reason_xpath = "./cda:entryRelationship[@typeCode='RSON']/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.88']/cda:value"
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@entry_class = QDM::DeviceApplied
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end
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def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
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device_applied = super
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device_applied.anatomicalLocationSite = code_if_present(entry_element.at_xpath(@anatomical_location_site_xpath))
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device_applied.anatomicalApproachSite = code_if_present(entry_element.at_xpath(@anatomical_approach_site_xpath))
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device_applied.reason = extract_reason(entry_element)
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device_applied
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end
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end
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end
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end
|
@@ -1,21 +0,0 @@
|
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1
|
-
module QRDA
|
2
|
-
module Cat1
|
3
|
-
class DeviceOrderImporter < SectionImporter
|
4
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-
def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.130']"))
|
5
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super(entry_finder)
|
6
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@id_xpath = './cda:entryRelationship/cda:supply/cda:id'
|
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-
@code_xpath = "./cda:entryRelationship/cda:supply[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.9']/cda:participant/cda:participantRole/cda:playingDevice/cda:code"
|
8
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-
@author_datetime_xpath = "./cda:entryRelationship/cda:supply[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.9']/cda:author/cda:time"
|
9
|
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@reason_xpath = "./cda:entryRelationship/cda:supply[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.9']/cda:entryRelationship[@typeCode='RSON']/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.88']/cda:value"
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@entry_class = QDM::DeviceOrder
|
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end
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-
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def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
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device_order = super
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device_order.reason = extract_reason(entry_element)
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device_order
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end
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end
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end
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end
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@@ -1,24 +0,0 @@
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1
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module QRDA
|
2
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module Cat1
|
3
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class DiagnosisImporter < SectionImporter
|
4
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def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.137']"))
|
5
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super(entry_finder)
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@id_xpath = './cda:entryRelationship/cda:observation/cda:id'
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@code_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.135']/cda:value"
|
8
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@author_datetime_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.135']/cda:author/cda:time"
|
9
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@prevalence_period_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.135']/cda:effectiveTime"
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@anatomical_location_site_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.135']/cda:targetSiteCode"
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@severity_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.135']/cda:entryRelationship/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.22.4.8']/cda:value"
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@entry_class = QDM::Diagnosis
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end
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def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
|
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diagnosis = super
|
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diagnosis.anatomicalLocationSite = code_if_present(entry_element.at_xpath(@anatomical_location_site_xpath))
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diagnosis.severity = code_if_present(entry_element.at_xpath(@severity_xpath))
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diagnosis
|
20
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end
|
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end
|
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end
|
24
|
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end
|
@@ -1,23 +0,0 @@
|
|
1
|
-
module QRDA
|
2
|
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module Cat1
|
3
|
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class DiagnosticStudyOrderImporter < SectionImporter
|
4
|
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def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.17']"))
|
5
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super(entry_finder)
|
6
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@id_xpath = './cda:id'
|
7
|
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@code_xpath = './cda:code'
|
8
|
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@author_datetime_xpath = "./cda:author/cda:time"
|
9
|
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@method_xpath = './cda:methodCode'
|
10
|
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@reason_xpath = "./cda:entryRelationship[@typeCode='RSON']/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.88']/cda:value"
|
11
|
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@entry_class = QDM::DiagnosticStudyOrder
|
12
|
-
end
|
13
|
-
|
14
|
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def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
|
15
|
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diagnostic_study_order = super
|
16
|
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diagnostic_study_order.method = code_if_present(entry_element.at_xpath(@method_xpath))
|
17
|
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diagnostic_study_order.reason = extract_reason(entry_element)
|
18
|
-
diagnostic_study_order
|
19
|
-
end
|
20
|
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|
21
|
-
end
|
22
|
-
end
|
23
|
-
end
|
@@ -1,33 +0,0 @@
|
|
1
|
-
module QRDA
|
2
|
-
module Cat1
|
3
|
-
class DiagnosticStudyPerformedImporter < SectionImporter
|
4
|
-
def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.18']"))
|
5
|
-
super(entry_finder)
|
6
|
-
@id_xpath = './cda:id'
|
7
|
-
@code_xpath = './cda:code'
|
8
|
-
@relevant_period_xpath = "./cda:effectiveTime"
|
9
|
-
@author_datetime_xpath = "./cda:author/cda:time"
|
10
|
-
@result_xpath = "./cda:entryRelationship[@typeCode='REFR']/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.22.4.2']/cda:value"
|
11
|
-
@result_datetime_xpath = "./cda:entryRelationship[@typeCode='REFR']/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.22.4.2']/cda:effectiveTime"
|
12
|
-
@status_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.93']/cda:value"
|
13
|
-
@method_xpath = './cda:methodCode'
|
14
|
-
@facility_location_xpath = "./cda:participant[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.100']/cda:participantRole[@classCode='SDLOC']/cda:code"
|
15
|
-
@components_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.149']"
|
16
|
-
@reason_xpath = "./cda:entryRelationship[@typeCode='RSON']/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.88']/cda:value"
|
17
|
-
@entry_class = QDM::DiagnosticStudyPerformed
|
18
|
-
end
|
19
|
-
|
20
|
-
def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
|
21
|
-
diagnostic_study_performed = super
|
22
|
-
diagnostic_study_performed.resultDatetime = extract_time(entry_element, @result_datetime_xpath)
|
23
|
-
diagnostic_study_performed.status = code_if_present(entry_element.at_xpath(@status_xpath))
|
24
|
-
diagnostic_study_performed.method = code_if_present(entry_element.at_xpath(@method_xpath))
|
25
|
-
diagnostic_study_performed.facilityLocation = code_if_present(entry_element.at_xpath(@facility_location_xpath))
|
26
|
-
diagnostic_study_performed.components = extract_components(entry_element)
|
27
|
-
diagnostic_study_performed.reason = extract_reason(entry_element)
|
28
|
-
diagnostic_study_performed
|
29
|
-
end
|
30
|
-
|
31
|
-
end
|
32
|
-
end
|
33
|
-
end
|
@@ -1,23 +0,0 @@
|
|
1
|
-
module QRDA
|
2
|
-
module Cat1
|
3
|
-
class EncounterOrderImporter < SectionImporter
|
4
|
-
def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.132']"))
|
5
|
-
super(entry_finder)
|
6
|
-
@id_xpath = './cda:entryRelationship/cda:encounter/cda:id'
|
7
|
-
@code_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.22']/cda:code"
|
8
|
-
@author_datetime_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.22']/cda:author/cda:time"
|
9
|
-
@facility_location_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.22']/cda:participant[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.100']/cda:participantRole[@classCode='SDLOC']/cda:code"
|
10
|
-
@reason_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.22']/cda:entryRelationship[@typeCode='RSON']/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.88']/cda:value"
|
11
|
-
@entry_class = QDM::EncounterOrder
|
12
|
-
end
|
13
|
-
|
14
|
-
def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
|
15
|
-
encounter_order = super
|
16
|
-
encounter_order.facilityLocation = code_if_present(entry_element.at_xpath(@facility_location_xpath))
|
17
|
-
encounter_order.reason = extract_reason(entry_element)
|
18
|
-
encounter_order
|
19
|
-
end
|
20
|
-
|
21
|
-
end
|
22
|
-
end
|
23
|
-
end
|
@@ -1,42 +0,0 @@
|
|
1
|
-
module QRDA
|
2
|
-
module Cat1
|
3
|
-
class EncounterPerformedImporter < SectionImporter
|
4
|
-
def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.133']"))
|
5
|
-
super(entry_finder)
|
6
|
-
@id_xpath = './cda:entryRelationship/cda:encounter/cda:id'
|
7
|
-
@code_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/cda:code"
|
8
|
-
@relevant_period_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/cda:effectiveTime"
|
9
|
-
@author_datetime_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/cda:author/cda:time"
|
10
|
-
@admission_source_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/cda:participant/cda:participantRole[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.151']/cda:code"
|
11
|
-
@discharge_disposition_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/sdtc:dischargeDispositionCode"
|
12
|
-
@facility_xpath = "./cda:entryRelationship/cda:encounter/cda:participant[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.100']"
|
13
|
-
@principal_diagnosis_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/cda:entryRelationship/cda:observation[cda:code/@code='8319008']/cda:value"
|
14
|
-
@diagnosis_xpath = "./cda:entryRelationship/cda:encounter[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.23']/cda:entryRelationship/cda:act/cda:entryRelationship/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.22.4.4']"
|
15
|
-
@entry_class = QDM::EncounterPerformed
|
16
|
-
end
|
17
|
-
|
18
|
-
def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
|
19
|
-
encounter_performed = super
|
20
|
-
encounter_performed.admissionSource = code_if_present(entry_element.at_xpath(@admission_source_xpath))
|
21
|
-
encounter_performed.dischargeDisposition = code_if_present(entry_element.at_xpath(@discharge_disposition_xpath))
|
22
|
-
extract_facility(entry_element, encounter_performed)
|
23
|
-
encounter_performed.principalDiagnosis = code_if_present(entry_element.at_xpath(@principal_diagnosis_xpath))
|
24
|
-
encounter_performed.diagnoses = extract_diagnoses(entry_element)
|
25
|
-
encounter_performed
|
26
|
-
end
|
27
|
-
|
28
|
-
private
|
29
|
-
|
30
|
-
def extract_diagnoses(parent_element)
|
31
|
-
diagnosis_elements = parent_element.xpath(@diagnosis_xpath)
|
32
|
-
diagnosis_list = []
|
33
|
-
diagnosis_elements.each do |diagnosis_element|
|
34
|
-
diagnosis_value = diagnosis_element.at_xpath("./cda:value")
|
35
|
-
diagnosis_list << code_if_present(diagnosis_value)
|
36
|
-
end
|
37
|
-
diagnosis_list.empty? ? nil : diagnosis_list
|
38
|
-
end
|
39
|
-
|
40
|
-
end
|
41
|
-
end
|
42
|
-
end
|
@@ -1,20 +0,0 @@
|
|
1
|
-
module QRDA
|
2
|
-
module Cat1
|
3
|
-
class ImmunizationAdministeredImporter < MedicationImporter
|
4
|
-
def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:substanceAdministration[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.140']"))
|
5
|
-
super(entry_finder)
|
6
|
-
@relevant_period_xpath = nil
|
7
|
-
@author_datetime_xpath = "./cda:effectiveTime"
|
8
|
-
@reason_xpath = "./cda:entryRelationship[@typeCode='RSON']/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.88']/cda:value"
|
9
|
-
@entry_class = QDM::ImmunizationAdministered
|
10
|
-
end
|
11
|
-
|
12
|
-
def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
|
13
|
-
immunization_administered = super
|
14
|
-
immunization_administered.reason = extract_reason(entry_element)
|
15
|
-
immunization_administered
|
16
|
-
end
|
17
|
-
|
18
|
-
end
|
19
|
-
end
|
20
|
-
end
|
@@ -1,21 +0,0 @@
|
|
1
|
-
module QRDA
|
2
|
-
module Cat1
|
3
|
-
class InterventionOrderImporter < SectionImporter
|
4
|
-
def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.31']"))
|
5
|
-
super(entry_finder)
|
6
|
-
@id_xpath = './cda:id'
|
7
|
-
@code_xpath = './cda:code'
|
8
|
-
@author_datetime_xpath = "./cda:author/cda:time"
|
9
|
-
@reason_xpath = "./cda:entryRelationship[@typeCode='RSON']/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.88']/cda:value"
|
10
|
-
@entry_class = QDM::InterventionOrder
|
11
|
-
end
|
12
|
-
|
13
|
-
def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
|
14
|
-
intervention_order = super
|
15
|
-
intervention_order.reason = extract_reason(entry_element)
|
16
|
-
intervention_order
|
17
|
-
end
|
18
|
-
|
19
|
-
end
|
20
|
-
end
|
21
|
-
end
|
@@ -1,25 +0,0 @@
|
|
1
|
-
module QRDA
|
2
|
-
module Cat1
|
3
|
-
class InterventionPerformedImporter < SectionImporter
|
4
|
-
def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:act[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.32']"))
|
5
|
-
super(entry_finder)
|
6
|
-
@id_xpath = './cda:id'
|
7
|
-
@code_xpath = './cda:code'
|
8
|
-
@relevant_period_xpath = "./cda:effectiveTime"
|
9
|
-
@author_datetime_xpath = "./cda:author/cda:time"
|
10
|
-
@result_xpath = "./cda:entryRelationship[@typeCode='REFR']/cda:observation/cda:value"
|
11
|
-
@status_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.93']/cda:value"
|
12
|
-
@reason_xpath = "./cda:entryRelationship[@typeCode='RSON']/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.88']/cda:value"
|
13
|
-
@entry_class = QDM::InterventionPerformed
|
14
|
-
end
|
15
|
-
|
16
|
-
def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
|
17
|
-
intervention_performed = super
|
18
|
-
intervention_performed.status = code_if_present(entry_element.at_xpath(@status_xpath))
|
19
|
-
intervention_performed.reason = extract_reason(entry_element)
|
20
|
-
intervention_performed
|
21
|
-
end
|
22
|
-
|
23
|
-
end
|
24
|
-
end
|
25
|
-
end
|
@@ -1,23 +0,0 @@
|
|
1
|
-
module QRDA
|
2
|
-
module Cat1
|
3
|
-
class LaboratoryTestOrderImporter < SectionImporter
|
4
|
-
def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.37']"))
|
5
|
-
super(entry_finder)
|
6
|
-
@id_xpath = './cda:id'
|
7
|
-
@code_xpath = './cda:code'
|
8
|
-
@author_datetime_xpath = "./cda:author/cda:time"
|
9
|
-
@method_xpath = './cda:methodCode'
|
10
|
-
@reason_xpath = "./cda:entryRelationship[@typeCode='RSON']/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.88']/cda:value"
|
11
|
-
@entry_class = QDM::LaboratoryTestOrder
|
12
|
-
end
|
13
|
-
|
14
|
-
def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
|
15
|
-
laboratory_test_order = super
|
16
|
-
laboratory_test_order.method = code_if_present(entry_element.at_xpath(@method_xpath))
|
17
|
-
laboratory_test_order.reason = extract_reason(entry_element)
|
18
|
-
laboratory_test_order
|
19
|
-
end
|
20
|
-
|
21
|
-
end
|
22
|
-
end
|
23
|
-
end
|
@@ -1,31 +0,0 @@
|
|
1
|
-
module QRDA
|
2
|
-
module Cat1
|
3
|
-
class LaboratoryTestPerformedImporter < SectionImporter
|
4
|
-
def initialize(entry_finder = QRDA::Cat1::EntryFinder.new("./cda:entry/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.38']"))
|
5
|
-
super(entry_finder)
|
6
|
-
@id_xpath = './cda:id'
|
7
|
-
@code_xpath = './cda:code'
|
8
|
-
@relevant_period_xpath = "./cda:effectiveTime"
|
9
|
-
@author_datetime_xpath = "./cda:author/cda:time"
|
10
|
-
@status_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.93']/cda:value"
|
11
|
-
@method_xpath = './cda:methodCode'
|
12
|
-
@result_xpath = "./cda:entryRelationship[@typeCode='REFR']/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.22.4.2']/cda:value"
|
13
|
-
@result_datetime_xpath = "./cda:entryRelationship[@typeCode='REFR']/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.22.4.2']/cda:effectiveTime"
|
14
|
-
@components_xpath = "./cda:entryRelationship/cda:observation[cda:templateId/@root = '2.16.840.1.113883.10.20.24.3.149']"
|
15
|
-
@reason_xpath = "./cda:entryRelationship[@typeCode='RSON']/cda:observation[cda:templateId/@root='2.16.840.1.113883.10.20.24.3.88']/cda:value"
|
16
|
-
@entry_class = QDM::LaboratoryTestPerformed
|
17
|
-
end
|
18
|
-
|
19
|
-
def create_entry(entry_element, nrh = NarrativeReferenceHandler.new)
|
20
|
-
laboratory_test_performed = super
|
21
|
-
laboratory_test_performed.status = code_if_present(entry_element.at_xpath(@status_xpath))
|
22
|
-
laboratory_test_performed.method = code_if_present(entry_element.at_xpath(@method_xpath))
|
23
|
-
laboratory_test_performed.resultDatetime = extract_time(entry_element, @result_datetime_xpath)
|
24
|
-
laboratory_test_performed.components = extract_components(entry_element)
|
25
|
-
laboratory_test_performed.reason = extract_reason(entry_element)
|
26
|
-
laboratory_test_performed
|
27
|
-
end
|
28
|
-
|
29
|
-
end
|
30
|
-
end
|
31
|
-
end
|