cqm-models 1.0.3 → 1.1.1.0

data/app/models/cqm/valueset.rb

@@ -0,0 +1,15 @@
+module CQM
+  # ValueSet represents a collection of Concepts, used by the Measures to specify a set of codes for a particular topic
+  class ValueSet
+    include Mongoid::Document
+    field :oid, type: String
+    field :display_name, type: String
+    field :version, type: String
+
+    index oid: 1
+
+    embeds_many :concepts
+
+    scope :by_oid, ->(oid) { where(oid: oid) }
+  end
+end

data/app/models/hqmfOid_to_datatype_map.json

@@ -0,0 +1,55 @@
+{
+  "2.16.840.1.113883.10.20.28.4.61": "PhysicalExamOrder",
+  "2.16.840.1.113883.10.20.28.4.130": "Participation",
+  "2.16.840.1.113883.10.20.28.4.55": "PatientCharacteristicSex",
+  "2.16.840.1.113883.10.20.28.4.7": "CareGoal",
+  "2.16.840.1.113883.10.20.28.4.53": "PatientCharacteristic",
+  "2.16.840.1.113883.10.20.28.4.56": "PatientCharacteristicEthnicity",
+  "2.16.840.1.113883.10.20.28.4.59": "PatientCharacteristicRace",
+  "2.16.840.1.113883.10.20.28.4.42": "LaboratoryTestPerformed",
+  "2.16.840.1.113883.10.20.28.4.116": "Symptom",
+  "2.16.840.1.113883.10.20.28.4.45": "MedicationAdministered",
+  "2.16.840.1.113883.10.20.28.4.68": "ProcedureRecommended",
+  "2.16.840.1.113883.10.20.28.4.5": "EncounterPerformed",
+  "2.16.840.1.113883.10.20.28.4.110": "Diagnosis",
+  "2.16.840.1.113883.10.20.28.4.132": "CommunicationPerformed",
+  "2.16.840.1.113883.10.20.28.4.117": "AssessmentPerformed",
+  "2.16.840.1.113883.10.20.28.4.6": "PatientCharacteristicClinicalTrialParticipant",
+  "2.16.840.1.113883.10.20.28.4.15": "DeviceOrder",
+  "2.16.840.1.113883.10.20.28.4.23": "DiagnosticStudyPerformed",
+  "2.16.840.1.113883.10.20.28.4.35": "InterventionOrder",
+  "2.16.840.1.113883.10.20.28.4.111": "FamilyHistory",
+  "2.16.840.1.113883.10.20.28.4.44": "MedicationActive",
+  "2.16.840.1.113883.10.20.28.4.41": "LaboratoryTestOrder",
+  "2.16.840.1.113883.10.20.28.4.22": "DiagnosticStudyOrder",
+  "2.16.840.1.113883.10.20.28.4.77": "SubstanceOrder",
+  "2.16.840.1.113883.10.20.28.4.58": "PatientCharacteristicPayer",
+  "2.16.840.1.113883.10.20.28.4.57": "PatientCharacteristicExpired",
+  "2.16.840.1.113883.10.20.28.4.131": "AssessmentOrder",
+  "2.16.840.1.113883.10.20.28.4.118": "AssessmentRecommended",
+  "2.16.840.1.113883.10.20.28.4.112": "ImmunizationAdministered",
+  "2.16.840.1.113883.10.20.28.4.73": "SubstanceAdministered",
+  "2.16.840.1.113883.10.20.28.4.27": "EncounterOrder",
+  "2.16.840.1.113883.10.20.28.4.28": "EncounterRecommended",
+  "2.16.840.1.113883.10.20.28.4.67": "ProcedurePerformed",
+  "2.16.840.1.113883.10.20.28.4.119": "AllergyIntolerance",
+  "2.16.840.1.113883.10.20.28.4.71": "ProviderCharacteristic",
+  "22.16.840.1.113883.10.20.28.4.63": "PhysicalExamRecommended",
+  "2.16.840.1.113883.10.20.28.4.54": "PatientCharacteristicBirthdate",
+  "2.16.840.1.113883.10.20.28.4.120": "AdverseEvent",
+  "2.16.840.1.113883.10.20.28.4.16": "DeviceRecommended",
+  "2.16.840.1.113883.10.20.28.4.13": "DeviceApplied",
+  "2.16.840.1.113883.10.20.28.4.48": "MedicationDischarge",
+  "2.16.840.1.113883.10.20.28.4.36": "InterventionPerformed",
+  "2.16.840.1.113883.10.20.28.4.43": "LaboratoryTestRecommended",
+  "2.16.840.1.113883.10.20.28.4.49": "MedicationDispensed",
+  "2.16.840.1.113883.10.20.28.4.24": "DiagnosticStudyRecommended",
+  "2.16.840.1.113883.10.20.28.4.113": "ImmunizationOrder",
+  "2.16.840.1.113883.10.20.28.4.52": "PatientCareExperience",
+  "2.16.840.1.113883.10.20.28.4.70": "ProviderCareExperience",
+  "2.16.840.1.113883.10.20.28.4.66": "ProcedureOrder",
+  "2.16.840.1.113883.10.20.28.4.51": "MedicationOrder",
+  "2.16.840.1.113883.10.20.28.4.78": "SubstanceRecommended",
+  "2.16.840.1.113883.10.20.28.4.37": "InterventionRecommended",
+  "2.16.840.1.113883.10.20.28.4.62": "PhysicalExamPerformed"
+}

data/app/models/model_finder.rb

@@ -0,0 +1,12 @@
+module QDM
+  # Find the right datatype model.
+  class ModelFinder
+    @hqmfOidToDatatypeMap = JSON.parse(File.read(File.join(File.dirname(__FILE__), 'hqmfOid_to_datatype_map.json')))
+
+    def self.by_hqmf_oid(hqmfOid)
+      datatype = @hqmfOidToDatatypeMap[hqmfOid]
+      return nil if datatype.nil?
+      return QDM.const_get(datatype)
+    end
+  end
+end

data/app/models/models.rb

@@ -3,6 +3,9 @@ module QDM
 end
 require 'mongoid'
 
+# ModelFinder
+require_relative 'model_finder'
+
 # Generated models that are dependencies for base types
 require_relative 'qdm/id'
 
@@ -12,14 +15,25 @@ require_relative 'qdm/basetypes/data_element'
 require_relative 'qdm/basetypes/interval'
 require_relative 'qdm/basetypes/quantity'
 require_relative 'qdm/basetypes/ratio'
+require_relative 'qdm/attributes/attribute'
+require_relative 'qdm/attributes/facility_location'
+require_relative 'qdm/attributes/component'
 
 # Tacoma-specific models
-require_relative 'qdm/tacoma/measure'
-require_relative 'qdm/tacoma/measure_package'
-require_relative 'qdm/tacoma/valueset'
-require_relative 'qdm/tacoma/concept'
+require_relative 'cqm/measure'
+require_relative 'cqm/measure_package'
+require_relative 'cqm/valueset'
+require_relative 'cqm/concept'
+require_relative 'cqm/cql_statement_dependency'
+require_relative 'cqm/cql_library'
+require_relative 'cqm/population_set'
+require_relative 'cqm/patient'
+require_relative 'cqm/provider'
 require_relative 'qdm/tacoma/individual_result'
 
+# Make Patient Generation Available
+require_relative '../../lib/generate_patients'
+
 # Generated models
 require_relative 'qdm/patient'
 require_relative 'qdm/physical_exam_order'
@@ -42,9 +56,7 @@ require_relative 'qdm/device_order'
 require_relative 'qdm/diagnostic_study_performed'
 require_relative 'qdm/intervention_order'
 require_relative 'qdm/family_history'
-require_relative 'qdm/component'
 require_relative 'qdm/result_component'
-require_relative 'qdm/facility_location'
 require_relative 'qdm/medication_active'
 require_relative 'qdm/laboratory_test_order'
 require_relative 'qdm/diagnostic_study_order'

data/app/models/qdm/adverse_event.rb

@@ -6,9 +6,10 @@ module QDM
     field :authorDatetime, type: DateTime
     field :relevantPeriod, type: QDM::Interval
     field :severity, type: QDM::Code
-    field :facilityLocation, type: QDM::Code
+    field :facilityLocation, type: QDM::FacilityLocation
     field :type, type: QDM::Code
-    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.3.120'
+    field :qdmTitle, type: String, default: 'Adverse Event'
+    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.120'
     field :qdmCategory, type: String, default: 'adverse_event'
     field :qdmVersion, type: String, default: '5.4'
   end

data/app/models/qdm/allergy_intolerance.rb

@@ -7,7 +7,8 @@ module QDM
     field :prevalencePeriod, type: QDM::Interval
     field :type, type: QDM::Code
     field :severity, type: QDM::Code
-    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.3.119'
+    field :qdmTitle, type: String, default: 'Allergy/Intolerance'
+    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.119'
     field :qdmCategory, type: String, default: 'allergy'
     field :qdmStatus, type: String, default: 'intolerance'
     field :qdmVersion, type: String, default: '5.4'

data/app/models/qdm/assessment_order.rb

@@ -6,6 +6,7 @@ module QDM
     field :authorDatetime, type: DateTime
     field :negationRationale, type: QDM::Code
     field :reason, type: QDM::Code
+    field :qdmTitle, type: String, default: 'Assessment, Order'
     field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.131'
     field :qdmCategory, type: String, default: 'assessment'
     field :qdmStatus, type: String, default: 'order'

data/app/models/qdm/assessment_performed.rb

@@ -10,7 +10,8 @@ module QDM
     field :result
     field :components, type: Array
     embeds_many :relatedTo, class_name: 'QDM::Id'
-    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.3.117'
+    field :qdmTitle, type: String, default: 'Assessment, Performed'
+    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.117'
     field :qdmCategory, type: String, default: 'assessment'
     field :qdmStatus, type: String, default: 'performed'
     field :qdmVersion, type: String, default: '5.4'

data/app/models/qdm/assessment_recommended.rb

@@ -6,7 +6,8 @@ module QDM
     field :authorDatetime, type: DateTime
     field :negationRationale, type: QDM::Code
     field :reason, type: QDM::Code
-    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.3.118'
+    field :qdmTitle, type: String, default: 'Assessment, Recommended'
+    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.118'
     field :qdmCategory, type: String, default: 'assessment'
     field :qdmStatus, type: String, default: 'recommended'
     field :qdmVersion, type: String, default: '5.4'

data/app/models/qdm/attributes/attribute.rb

@@ -0,0 +1,63 @@
+module QDM
+  # Represents QDM attribute
+  class Attribute
+    include Mongoid::Document
+
+    def initialize(options = {})
+      super(options)
+    end
+
+    # Returns the attribute requested on the datatype.
+    def get(attribute)
+      send(attribute) if has_attribute?(attribute)
+    end
+
+    def mongoize
+      json_representation = {}
+      attribute_names.each do |field|
+        json_representation[field] = send(field).mongoize
+      end
+      json_representation
+    end
+
+    # Include '_type' in any JSON output. This is necessary for deserialization.
+    def to_json(options = nil)
+      serializable_hash(methods: :_type).to_json(options)
+    end
+
+    class << self
+      # Get the object as it was stored in the database, and instantiate
+      # this custom class from it.
+      def demongoize(object)
+        return nil unless object
+        object = object.symbolize_keys
+        if object.is_a?(Hash)
+          # This will turn the object into the concrete type eg: facilityLocation
+          data_element = QDM.const_get(object[:_type]).new
+          data_element.attribute_names.each do |field|
+            data_element.send(field + '=', object[field.to_sym])
+          end
+          data_element
+        else object
+        end
+      end
+
+      # Takes any possible object and converts it to how it would be
+      # stored in the database.
+      def mongoize(object)
+        case object
+        when nil then nil
+        when QDM::Attribute then object.mongoize
+        when Hash
+          object = object.symbolize_keys
+          data_element = QDM.const_get(object[:_type]).new
+          data_element.attribute_names.each do |field|
+            data_element.send(field + '=', object[field.to_sym])
+          end
+          data_element.mongoize
+        else object
+        end
+      end
+    end
+  end
+end

data/app/models/qdm/{component.rb → attributes/component.rb}

@@ -1,6 +1,6 @@
 module QDM
   # app/models/qdm/component.rb
-  class Component < DataElement
+  class Component < Attribute
     include Mongoid::Document
     field :code, type: QDM::Code
     field :result

data/app/models/qdm/{facility_location.rb → attributes/facility_location.rb}

@@ -1,6 +1,6 @@
 module QDM
   # app/models/qdm/facility_location.rb
-  class FacilityLocation < DataElement
+  class FacilityLocation < Attribute
     include Mongoid::Document
     field :code, type: QDM::Code
     field :locationPeriod, type: QDM::Interval

data/app/models/qdm/basetypes/data_element.rb

@@ -3,6 +3,7 @@ module QDM
   class DataElement
     include Mongoid::Document
     embedded_in :patient
+    embedded_in :measure
 
     # Codes that describe this datatype.
     field :dataElementCodes, type: Array, default: []
@@ -10,6 +11,9 @@ module QDM
     # Optional description.
     field :description, type: String
 
+    # Valueset oid of the specific type.
+    field :codeListId, type: String
+
     embeds_one :id, class_name: 'QDM::Id'
 
     def initialize(options = {})
@@ -66,14 +70,25 @@ module QDM
         end
 
         # Special case for facility locations
-        next unless field == 'facilityLocations'
-        send(field).each do |facility_location|
-          facility_location['locationPeriod'][:low] = (facility_location['locationPeriod'][:low].to_time + seconds).to_datetime
-          facility_location['locationPeriod'][:high] = (facility_location['locationPeriod'][:high].to_time + seconds).to_datetime
+        if field == 'facilityLocations'
+          send(field).each do |facility_location|
+            shift_facility_location_dates(facility_location, seconds)
+          end
+        elsif field == 'facilityLocation'
+          facility_location = send(field)
+          unless facility_location.nil?
+            shift_facility_location_dates(facility_location, seconds)
+            send(field + '=', facility_location)
+          end
         end
       end
     end
 
+    def shift_facility_location_dates(facility_location, seconds)
+      facility_location['locationPeriod'][:low] = (facility_location['locationPeriod'][:low].to_time + seconds).to_datetime
+      facility_location['locationPeriod'][:high] = (facility_location['locationPeriod'][:high].to_time + seconds).to_datetime
+    end
+
     class << self
       # Get the object as it was stored in the database, and instantiate
       # this custom class from it.
@@ -82,7 +97,7 @@ module QDM
         return nil unless object
         object = object.symbolize_keys
         if object.is_a?(Hash)
-          data_element = QDM::DataElement.new
+          data_element = QDM.const_get(object[:_type])
           data_element.attribute_names.each do |field|
             data_element.send(field + '=', object[field.to_sym])
           end
@@ -99,7 +114,7 @@ module QDM
         when QDM::DataElement then object.mongoize
         when Hash
           object = object.symbolize_keys
-          data_element = QDM::DataElement.new
+          data_element = QDM.const_get(object[:_type])
           data_element.attribute_names.each do |field|
             data_element.send(field + '=', object[field.to_sym])
           end

data/app/models/qdm/basetypes/interval.rb

@@ -6,7 +6,7 @@ module QDM
     # Low and high are required (at minimum).
     def initialize(low, high, lowClosed = true, highClosed = true)
       @low = low
-      @high = high
+      @high = high.is_a?(DateTime) && (high.year > 9999) ? high.change(year: 9999) : high
       @lowClosed = lowClosed
       @highClosed = highClosed
     end
@@ -27,6 +27,7 @@ module QDM
       end
       if (@high.is_a? DateTime) || (@high.is_a? Time)
         @high = (@high.utc.to_time + seconds.seconds).to_datetime.new_offset(0)
+        @high = @high.year > 9999 ? @high.change(year: 9999) : @high
       end
       self
     end

data/app/models/qdm/care_goal.rb

@@ -6,7 +6,8 @@ module QDM
     field :relevantPeriod, type: QDM::Interval
     embeds_many :relatedTo, class_name: 'QDM::Id'
     field :targetOutcome
-    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.3.7'
+    field :qdmTitle, type: String, default: 'Care Goal'
+    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.7'
     field :qdmCategory, type: String, default: 'care_goal'
     field :qdmVersion, type: String, default: '5.4'
   end

data/app/models/qdm/communication_performed.rb

@@ -11,6 +11,7 @@ module QDM
     embeds_many :relatedTo, class_name: 'QDM::Id'
     field :relevantPeriod, type: QDM::Interval
     field :negationRationale, type: QDM::Code
+    field :qdmTitle, type: String, default: 'Communication, Performed'
     field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.132'
     field :qdmCategory, type: String, default: 'communication'
     field :qdmStatus, type: String, default: 'performed'

data/app/models/qdm/device_applied.rb

@@ -8,7 +8,8 @@ module QDM
     field :negationRationale, type: QDM::Code
     field :reason, type: QDM::Code
     field :anatomicalLocationSite, type: QDM::Code
-    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.3.13'
+    field :qdmTitle, type: String, default: 'Device, Applied'
+    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.13'
     field :qdmCategory, type: String, default: 'device'
     field :qdmStatus, type: String, default: 'applied'
     field :qdmVersion, type: String, default: '5.4'

data/app/models/qdm/device_order.rb

@@ -6,7 +6,8 @@ module QDM
     field :authorDatetime, type: DateTime
     field :negationRationale, type: QDM::Code
     field :reason, type: QDM::Code
-    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.3.15'
+    field :qdmTitle, type: String, default: 'Device, Order'
+    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.15'
     field :qdmCategory, type: String, default: 'device'
     field :qdmStatus, type: String, default: 'order'
     field :qdmVersion, type: String, default: '5.4'

data/app/models/qdm/device_recommended.rb

@@ -6,7 +6,8 @@ module QDM
     field :authorDatetime, type: DateTime
     field :negationRationale, type: QDM::Code
     field :reason, type: QDM::Code
-    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.3.16'
+    field :qdmTitle, type: String, default: 'Device, Recommended'
+    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.16'
     field :qdmCategory, type: String, default: 'device'
     field :qdmStatus, type: String, default: 'recommended'
     field :qdmVersion, type: String, default: '5.4'

data/app/models/qdm/diagnosis.rb

@@ -7,7 +7,8 @@ module QDM
     field :prevalencePeriod, type: QDM::Interval
     field :anatomicalLocationSite, type: QDM::Code
     field :severity, type: QDM::Code
-    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.3.110'
+    field :qdmTitle, type: String, default: 'Diagnosis'
+    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.110'
     field :qrdaOid, type: String, default: '2.16.840.1.113883.10.20.24.3.135'
     field :qdmCategory, type: String, default: 'condition'
     field :qdmVersion, type: String, default: '5.4'

data/app/models/qdm/diagnostic_study_order.rb

@@ -6,7 +6,8 @@ module QDM
     field :authorDatetime, type: DateTime
     field :reason, type: QDM::Code
     field :negationRationale, type: QDM::Code
-    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.3.22'
+    field :qdmTitle, type: String, default: 'Diagnostic Study, Order'
+    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.22'
     field :qdmCategory, type: String, default: 'diagnostic_study'
     field :qdmStatus, type: String, default: 'order'
     field :qdmVersion, type: String, default: '5.4'

data/app/models/qdm/diagnostic_study_performed.rb

@@ -10,10 +10,11 @@ module QDM
     field :resultDatetime, type: DateTime
     field :status, type: QDM::Code
     field :method, type: QDM::Code
-    field :facilityLocation, type: QDM::Code
+    field :facilityLocation, type: QDM::FacilityLocation
     field :negationRationale, type: QDM::Code
     field :components, type: Array
-    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.3.23'
+    field :qdmTitle, type: String, default: 'Diagnostic Study, Performed'
+    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.23'
     field :qdmCategory, type: String, default: 'diagnostic_study'
     field :qdmStatus, type: String, default: 'performed'
     field :qdmVersion, type: String, default: '5.4'

data/app/models/qdm/diagnostic_study_recommended.rb

@@ -5,7 +5,8 @@ module QDM
     embedded_in :patient
     field :authorDatetime, type: DateTime
     field :negationRationale, type: QDM::Code
-    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.3.24'
+    field :qdmTitle, type: String, default: 'Diagnostic Study, Recommended'
+    field :hqmfOid, type: String, default: '2.16.840.1.113883.10.20.28.4.24'
     field :qrdaOid, type: String, default: '2.16.840.1.113883.10.20.24.3.19'
     field :qdmCategory, type: String, default: 'diagnostic_study'
     field :qdmStatus, type: String, default: 'recommended'