cqm-models 1.0.3 → 1.1.1.0

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: cqm-models
 version: !ruby/object:Gem::Version
-  version: 1.0.3
+  version: 1.1.1.0
 platform: ruby
 authors:
 - aholmes@mitre.org
@@ -10,8 +10,22 @@ authors:
 autorequire: 
 bindir: exe
 cert_chain: []
-date: 2019-05-16 00:00:00.000000000 Z
+date: 2019-05-22 00:00:00.000000000 Z
 dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundle-audit
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
 - !ruby/object:Gem::Dependency
   name: bundler
   requirement: !ruby/object:Gem::Requirement
@@ -40,6 +54,20 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: 10.0.0
+- !ruby/object:Gem::Dependency
+  name: codecov
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
 - !ruby/object:Gem::Dependency
   name: mongoid
   requirement: !ruby/object:Gem::Requirement
@@ -60,14 +88,14 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '5.1'
+        version: '5.2'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '5.1'
+        version: '5.2'
 - !ruby/object:Gem::Dependency
   name: rake
   requirement: !ruby/object:Gem::Requirement
@@ -110,6 +138,20 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: 0.54.0
+- !ruby/object:Gem::Dependency
+  name: simplecov
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
 description: This library contains auto generated Mongo (Mongoid) models that correspond
   to the QDM (Quality Data Model) specification.
 email: 
@@ -136,8 +178,6 @@ files:
 - app/assets/javascripts/AssessmentRecommended.js
 - app/assets/javascripts/CareGoal.js
 - app/assets/javascripts/CommunicationPerformed.js
-- app/assets/javascripts/Component.js
-- app/assets/javascripts/Concept.js
 - app/assets/javascripts/DeviceApplied.js
 - app/assets/javascripts/DeviceOrder.js
 - app/assets/javascripts/DeviceRecommended.js
@@ -148,7 +188,6 @@ files:
 - app/assets/javascripts/EncounterOrder.js
 - app/assets/javascripts/EncounterPerformed.js
 - app/assets/javascripts/EncounterRecommended.js
-- app/assets/javascripts/FacilityLocation.js
 - app/assets/javascripts/FamilyHistory.js
 - app/assets/javascripts/Id.js
 - app/assets/javascripts/ImmunizationAdministered.js
@@ -160,15 +199,12 @@ files:
 - app/assets/javascripts/LaboratoryTestOrder.js
 - app/assets/javascripts/LaboratoryTestPerformed.js
 - app/assets/javascripts/LaboratoryTestRecommended.js
-- app/assets/javascripts/Measure.js
-- app/assets/javascripts/MeasurePackage.js
 - app/assets/javascripts/MedicationActive.js
 - app/assets/javascripts/MedicationAdministered.js
 - app/assets/javascripts/MedicationDischarge.js
 - app/assets/javascripts/MedicationDispensed.js
 - app/assets/javascripts/MedicationOrder.js
 - app/assets/javascripts/Participation.js
-- app/assets/javascripts/Patient.js
 - app/assets/javascripts/PatientCareExperience.js
 - app/assets/javascripts/PatientCharacteristic.js
 - app/assets/javascripts/PatientCharacteristicBirthdate.js
@@ -186,13 +222,15 @@ files:
 - app/assets/javascripts/ProcedureRecommended.js
 - app/assets/javascripts/ProviderCareExperience.js
 - app/assets/javascripts/ProviderCharacteristic.js
+- app/assets/javascripts/QDMPatient.js
 - app/assets/javascripts/Result.js
 - app/assets/javascripts/ResultComponent.js
 - app/assets/javascripts/SubstanceAdministered.js
 - app/assets/javascripts/SubstanceOrder.js
 - app/assets/javascripts/SubstanceRecommended.js
 - app/assets/javascripts/Symptom.js
-- app/assets/javascripts/ValueSet.js
+- app/assets/javascripts/attributes/Component.js
+- app/assets/javascripts/attributes/FacilityLocation.js
 - app/assets/javascripts/basetypes/Any.js
 - app/assets/javascripts/basetypes/Code.js
 - app/assets/javascripts/basetypes/DataElement.js
@@ -200,13 +238,38 @@ files:
 - app/assets/javascripts/basetypes/Interval.js
 - app/assets/javascripts/basetypes/Quantity.js
 - app/assets/javascripts/basetypes/Ratio.js
+- app/assets/javascripts/browser.js
+- app/assets/javascripts/cqm/AllCQMModels.js
+- app/assets/javascripts/cqm/CQLLibrary.js
+- app/assets/javascripts/cqm/CQLStatementDependency.js
+- app/assets/javascripts/cqm/Concept.js
+- app/assets/javascripts/cqm/Measure.js
+- app/assets/javascripts/cqm/MeasurePackage.js
+- app/assets/javascripts/cqm/Patient.js
+- app/assets/javascripts/cqm/PopulationSet.js
+- app/assets/javascripts/cqm/Provider.js
+- app/assets/javascripts/cqm/ValueSet.js
 - app/assets/javascripts/index.js
+- app/models/cqm/concept.rb
+- app/models/cqm/cql_library.rb
+- app/models/cqm/cql_statement_dependency.rb
+- app/models/cqm/measure.rb
+- app/models/cqm/measure_package.rb
+- app/models/cqm/patient.rb
+- app/models/cqm/population_set.rb
+- app/models/cqm/provider.rb
+- app/models/cqm/valueset.rb
+- app/models/hqmfOid_to_datatype_map.json
+- app/models/model_finder.rb
 - app/models/models.rb
 - app/models/qdm/adverse_event.rb
 - app/models/qdm/allergy_intolerance.rb
 - app/models/qdm/assessment_order.rb
 - app/models/qdm/assessment_performed.rb
 - app/models/qdm/assessment_recommended.rb
+- app/models/qdm/attributes/attribute.rb
+- app/models/qdm/attributes/component.rb
+- app/models/qdm/attributes/facility_location.rb
 - app/models/qdm/basetypes/code.rb
 - app/models/qdm/basetypes/data_element.rb
 - app/models/qdm/basetypes/interval.rb
@@ -214,7 +277,6 @@ files:
 - app/models/qdm/basetypes/ratio.rb
 - app/models/qdm/care_goal.rb
 - app/models/qdm/communication_performed.rb
-- app/models/qdm/component.rb
 - app/models/qdm/device_applied.rb
 - app/models/qdm/device_order.rb
 - app/models/qdm/device_recommended.rb
@@ -225,7 +287,6 @@ files:
 - app/models/qdm/encounter_order.rb
 - app/models/qdm/encounter_performed.rb
 - app/models/qdm/encounter_recommended.rb
-- app/models/qdm/facility_location.rb
 - app/models/qdm/family_history.rb
 - app/models/qdm/id.rb
 - app/models/qdm/immunization_administered.rb
@@ -265,20 +326,25 @@ files:
 - app/models/qdm/substance_order.rb
 - app/models/qdm/substance_recommended.rb
 - app/models/qdm/symptom.rb
-- app/models/qdm/tacoma/concept.rb
 - app/models/qdm/tacoma/individual_result.rb
-- app/models/qdm/tacoma/measure.rb
-- app/models/qdm/tacoma/measure_package.rb
-- app/models/qdm/tacoma/valueset.rb
+- bin/build_cql_execution.sh
 - bin/console
 - bin/setup
+- bin/validate_browser.sh
 - bin/validate_dist.sh
+- bin/validate_generator.sh
 - config/mongoid.yml
 - cqm-models.gemspec
-- data/oids.json
+- data/oids_qdm_5.4.json
+- data/oids_unversioned.json
+- dist/browser.js
 - dist/index.js
 - lib/cqm/models.rb
 - lib/generate_models.rb
+- lib/generate_patients.rb
+- lib/generate_types.rb
+- lib/generators/custom_mongo/model.rb.tt
+- lib/generators/custom_mongo/model_generator.rb
 - modelinfo/qdm-modelinfo-4.2.xml
 - modelinfo/qdm-modelinfo-4.3.xml
 - modelinfo/qdm-modelinfo-5.0.1.xml
@@ -286,6 +352,7 @@ files:
 - modelinfo/qdm-modelinfo-5.0.xml
 - modelinfo/qdm-modelinfo-5.3.xml
 - modelinfo/qdm-modelinfo-5.4.xml
+- notice.md
 - package.json
 - templates/all_data_elements_template.js.erb
 - templates/id_template.js.erb
@@ -316,7 +383,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.6.14
+rubygems_version: 2.7.7
 signing_key: 
 specification_version: 4
 summary: Mongo models that correspond to the QDM specification.

data/app/assets/javascripts/Component.js

@@ -1,26 +0,0 @@
-const mongoose = require('mongoose');
-const { DataElementSchema } = require('./basetypes/DataElement');
-const Code = require('./basetypes/Code');
-const Interval = require('./basetypes/Interval');
-const Quantity = require('./basetypes/Quantity');
-const DateTime = require('./basetypes/DateTime');
-
-const { FacilityLocationSchema } = require('./FacilityLocation');
-const { IdSchema } = require('./Id');
-const Any = require('./basetypes/Any');
-
-const [Number, String] = [
-  mongoose.Schema.Types.Number,
-  mongoose.Schema.Types.String,
-];
-
-const ComponentSchema = new mongoose.Schema({
-  code: Code,
-  result: Any,
-  qdmVersion: { type: String, default: '5.4' },
-  _type: { type: String, default: 'Component' },
-
-});
-
-module.exports.ComponentSchema = ComponentSchema;
-module.exports.Component = mongoose.model('Component', ComponentSchema);

data/app/assets/javascripts/Concept.js

@@ -1,14 +0,0 @@
-const mongoose = require('mongoose');
-
-const mString = mongoose.Schema.Types.String;
-
-const ConceptSchema = mongoose.Schema({
-  code: mString,
-  code_system: mString,
-  code_system_name: mString,
-  code_system_version: mString,
-  display_name: mString,
-});
-
-module.exports.ConceptSchema = ConceptSchema;
-module.exports.Concept = mongoose.model('concept', ConceptSchema);

data/app/assets/javascripts/FacilityLocation.js

@@ -1,26 +0,0 @@
-const mongoose = require('mongoose');
-const { DataElementSchema } = require('./basetypes/DataElement');
-const Code = require('./basetypes/Code');
-const Interval = require('./basetypes/Interval');
-const Quantity = require('./basetypes/Quantity');
-const DateTime = require('./basetypes/DateTime');
-const { ComponentSchema } = require('./Component');
-
-const { IdSchema } = require('./Id');
-const Any = require('./basetypes/Any');
-
-const [Number, String] = [
-  mongoose.Schema.Types.Number,
-  mongoose.Schema.Types.String,
-];
-
-const FacilityLocationSchema = new mongoose.Schema({
-  code: Code,
-  locationPeriod: Interval,
-  qdmVersion: { type: String, default: '5.4' },
-  _type: { type: String, default: 'FacilityLocation' },
-
-});
-
-module.exports.FacilityLocationSchema = FacilityLocationSchema;
-module.exports.FacilityLocation = mongoose.model('FacilityLocation', FacilityLocationSchema);

data/app/assets/javascripts/Measure.js

@@ -1,78 +0,0 @@
-const mongoose = require('mongoose');
-const Code = require('./basetypes/Code');
-const Interval = require('./basetypes/Interval');
-const Quantity = require('./basetypes/Quantity');
-
-const [Number, String, Boolean, Mixed, ObjectId, Date] = [
-  mongoose.Schema.Types.Number,
-  mongoose.Schema.Types.String,
-  mongoose.Schema.Types.Boolean,
-  mongoose.Schema.Types.Mixed,
-  mongoose.Schema.Types.ObjectId,
-  mongoose.Schema.Types.Date,
-];
-
-const MeasureSchema = mongoose.Schema(
-  {
-    // ID/other measure information
-    id: String,
-    measure_id: String,
-    hqmf_id: String,
-    hqmf_set_id: String,
-    hqmf_version_number: Number,
-    cms_id: String,
-    title: String,
-    description: String,
-    type: String,
-    category: { type: String, default: 'Uncategorized' },
-
-    // Measure type variables
-    episode_of_care: Boolean,
-    continuous_constiable: Boolean,
-    episode_ids: [],
-
-    // Publishing data (used by Bonnie)
-    published: Boolean,
-    publish_date: Date,
-    version: Number,
-
-    // ELM/CQL Measure-logic related data
-    elm_annotations: Mixed,
-    cql: [String],
-    elm: [Mixed],
-    main_cql_library: String,
-    cql_statement_dependencies: Mixed,
-
-    // HQMF/Tacoma-specific Measure-logic related data
-    population_criteria: Mixed,
-    data_criteria: Mixed,
-    source_data_criteria: Mixed,
-    measure_period: Interval,
-    measure_attributes: [],
-    populations: [Mixed],
-    populations_cql_map: Mixed,
-    observations: [Mixed],
-    // TODO: Depending on how we restructure the Measure/Population object, may be deleted in the future
-    population_ids: Mixed,
-
-    value_sets: [{ type: ObjectId, ref: 'ValueSet' }],
-
-    complexity: Mixed, // Bonnie-specific?
-
-    // Relations to other model classes
-    user: { type: ObjectId, ref: 'User', index: true }, // Bonnie-specific
-    bundle: { type: ObjectId, ref: 'Bundle' }, // Cypress-specific, but used in Bonnie-bundler as well
-    package: { type: ObjectId, ref: 'MeasurePackage' }, // Bonnie specific
-  },
-  // Options
-  {
-    timestamps: { createdAt: 'created_at', updatedAt: 'updated_at' }, // These are the Mongoid conventions for timestamps
-  }
-);
-
-MeasureSchema.virtual('ALL_POPULATION_CODES').get(() => ['STRAT', 'IPP', 'DENOM', 'DENEX', 'NUMER', 'NUMEX', 'DENEXCEP', 'MSRPOPL', 'OBSERV', 'MSRPOPLEX']);
-
-MeasureSchema.virtual('cqlSkipStatements').get(() => ['SDE Ethnicity', 'SDE Payer', 'SDE Race', 'SDE Sex']);
-
-module.exports.MeasureSchema = MeasureSchema;
-module.exports.Measure = mongoose.model('measure', MeasureSchema);

data/app/assets/javascripts/Patient.js

@@ -1,262 +0,0 @@
-const mongoose = require('mongoose');
-const Code = require('./basetypes/Code');
-const Interval = require('./basetypes/Interval');
-const Quantity = require('./basetypes/Quantity');
-const DateTime = require('./basetypes/DateTime');
-const AllDataElements = require('./AllDataElements');
-
-const [Schema, Number, String, Mixed] = [
-  mongoose.Schema,
-  mongoose.Schema.Types.Number,
-  mongoose.Schema.Types.String,
-  mongoose.Schema.Types.Mixed,
-];
-
-const PatientSchema = new Schema({
-  birthDatetime: DateTime,
-  qdmVersion: { type: String, default: '5.4' },
-  _type: { type: String, default: 'Patient' },
-
-  givenNames: [String],
-  familyName: String,
-  bundleId: String,
-  // These are the "data criteria", or QDM datatype elements that exist on a
-  // patient.
-  dataElements: [],
-  // This field is for application specific information only. If both Bonnie
-  // Cypress use a common field, it should be made a field on this model,
-  // and not put into extendedData.
-  extendedData: {
-    type: Mixed,
-    default: {},
-  },
-}, { id: false });
-
-// After initialization of a Patient model, initialize every individual data element
-// to its respective Mongoose Model
-PatientSchema.methods.initializeDataElements = function initializeDataElements() {
-  let typeStripped;
-  const dataElementsInit = [];
-  this.dataElements.forEach((element) => {
-    typeStripped = element._type.replace(/QDM::/, '');
-    if (typeStripped in AllDataElements) {
-      dataElementsInit.push(AllDataElements[typeStripped](element));
-    } else {
-      dataElementsInit.push(element);
-    }
-  });
-  this.set({ dataElements: dataElementsInit });
-};
-
-PatientSchema.queue('initializeDataElements');
-
-PatientSchema.methods.id = function id() {
-  return this._id;
-};
-
-// Returns an array of elements that exist on this patient, that
-// match the given HQMF data criteria OID.
-PatientSchema.methods.getByHqmfOid = function getByHqmfOid(hqmfOid) {
-  return this.dataElements.filter(element => element.hqmfOid === hqmfOid);
-};
-
-// Returns an array of elements that exist on this patient, that
-// match the given QRDA data criteria OID.
-PatientSchema.methods.getByQrdaOid = function getByQrdaOid(qrdaOid) {
-  return this.dataElements.filter(element => element.qrdaOid === qrdaOid);
-};
-
-// Returns an array of elements that exist on this patient. Optionally
-// takes a category, which returns all elements of that QDM category.
-// Example: patient.getDataElements(category = 'encounters') will return
-// all Encounter QDM data types active on the patient.
-PatientSchema.methods.getDataElements = function getDataElements(params) {
-  if (params.qdmCategory && params.qdmStatus) {
-    return this.dataElements.filter(element => (element.qdmCategory === params.qdmCategory) && (element.qdmStatus === params.qdmStatus));
-  } else if (params.category) {
-    return this.dataElements.filter(element => element.qdmCategory === params.qdmCategory);
-  }
-  return this.dataElements;
-};
-
-// Returns an array of dataElements that exist on the patient, queried by
-// QDM profile
-// @param {string} profile - the data criteria requested by the execution engine
-// @param {boolean} isNegated - whether dataElements should be returned based on their negation status
-// @returns {DataElement[]}
-PatientSchema.methods.getByProfile = function getByProfile(profile, isNegated = null) {
-  // If isNegated == true, only return data elements with a negationRationale that is not null.
-  // If isNegated == false, only return data elements with a null negationRationale.
-  // If isNegated == null, return all matching data elements by type, regardless of negationRationale.
-  const results = this.dataElements.filter(element => element._type === `QDM::${profile}` && (isNegated === null || !!element.negationRationale === isNegated));
-  return results.map((result) => {
-    const removedMongooseItems = AllDataElements[profile](result).toObject();
-    // toObject() will remove all mongoose functions but also remove the schema methods, so we add them back
-    Object.entries(Object.getPrototypeOf(result).schema.methods).forEach(([method_name, method]) => {
-      removedMongooseItems[method_name] = method;
-    });
-    return removedMongooseItems;
-  });
-};
-
-// This method is called by the CQL execution engine on a CQLPatient when
-// the execution engine wants information on a record. A record could be patient
-// characteristic information about the patient, or it could be data criteria
-// that currently exist on this patient (data criteria you drag on a patient
-// in Bonnie patient builder).
-// @param {String} profile - the data criteria requested by the execution engine
-// @returns {Object}
-PatientSchema.methods.findRecords = function findRecords(profile) {
-  let profileStripped;
-  if (profile === 'Patient') {
-    // Requested generic patient info
-    const info = { birthDatetime: this.birthDatetime };
-    return [info];
-  } else if (/PatientCharacteristic/.test(profile)) {
-    // Requested a patient characteristic
-    profileStripped = profile.replace(/ *\{[^)]*\} */g, '');
-    return this.getByProfile(profileStripped);
-  } else if (profile != null) {
-    // Requested something else (probably a QDM data type).
-
-    // Strip model details from request. The requested profile string contains
-    // a lot of things we do not need or care about. Example, we might see
-    // something like:
-    // "{urn:healthit-gov:qdm:v5_0_draft}PatientCharacteristicEthnicity"
-    // Where we only care about: "PatientCharacteristicEthnicity".
-    profileStripped = profile.replace(/ *\{[^)]*\} */g, '');
-
-    // Check and handle negation status
-    if (/Positive/.test(profileStripped)) {
-      profileStripped = profileStripped.replace(/Positive/, '');
-      // Since the data criteria is 'Positive', it is not negated.
-      return this.getByProfile(profileStripped, false);
-    } else if (/Negative/.test(profileStripped)) {
-      profileStripped = profileStripped.replace(/Negative/, '');
-      // Since the data criteria is 'Negative', it is negated.
-      return this.getByProfile(profileStripped, true);
-    }
-    // No negation status, proceed normally
-    return this.getByProfile(profileStripped);
-  }
-  return [];
-};
-
-PatientSchema.methods.adverse_events = function adverse_events() {
-  return this.getDataElements({ category: 'adverse_event' });
-};
-
-PatientSchema.methods.allergies = function allergies() {
-  return this.getDataElements({ category: 'allergy' });
-};
-
-PatientSchema.methods.assessments = function assessments() {
-  return this.getDataElements({ category: 'assessment' });
-};
-
-PatientSchema.methods.care_experiences = function care_experiences() {
-  return this.getDataElements({ category: 'care_experience' });
-};
-
-PatientSchema.methods.care_goals = function care_goals() {
-  return this.getDataElements({ category: 'care_goal' });
-};
-
-PatientSchema.methods.communications = function communications() {
-  return this.getDataElements({ category: 'communication' });
-};
-
-PatientSchema.methods.conditions = function conditions() {
-  return this.getDataElements({ category: 'condition' });
-};
-
-PatientSchema.methods.devices = function devices() {
-  return this.getDataElements({ category: 'device' });
-};
-
-PatientSchema.methods.diagnostic_studies = function diagnostic_studies() {
-  return this.getDataElements({ category: 'diagnostic_study' });
-};
-
-PatientSchema.methods.encounters = function encounters() {
-  return this.getDataElements({ category: 'encounter' });
-};
-
-PatientSchema.methods.family_history = function family_history() {
-  return this.getDataElements({ category: 'family_history' });
-};
-
-PatientSchema.methods.functional_statuses = function functional_statuses() {
-  return this.getDataElements({ category: 'functional_status' });
-};
-
-PatientSchema.methods.immunizations = function immunizations() {
-  return this.getDataElements({ category: 'immunization' });
-};
-
-PatientSchema.methods.interventions = function interventions() {
-  return this.getDataElements({ category: 'intervention' });
-};
-
-PatientSchema.methods.laboratory_tests = function laboratory_tests() {
-  return this.getDataElements({ category: 'laboratory_test' });
-};
-
-PatientSchema.methods.medical_equipment = function medical_equipment() {
-  return this.getDataElements({ category: 'medical_equipment' });
-};
-
-PatientSchema.methods.medications = function medications() {
-  return this.getDataElements({ category: 'medication' });
-};
-
-PatientSchema.methods.physical_exams = function physical_exams() {
-  return this.getDataElements({ category: 'physical_exam' });
-};
-
-PatientSchema.methods.preferences = function preferences() {
-  return this.getDataElements({ category: 'preference' });
-};
-
-PatientSchema.methods.provider_characteristics = function provider_characteristics() {
-  return this.getDataElements({ category: 'provider_characteristic' });
-};
-
-PatientSchema.methods.procedures = function procedures() {
-  return this.getDataElements({ category: 'procedure' });
-};
-
-PatientSchema.methods.results = function results() {
-  return this.getDataElements({ category: 'result' });
-};
-
-PatientSchema.methods.risk_category_assessments = function risk_category_assessments() {
-  return this.getDataElements({ category: 'risk_category_assessment' });
-};
-
-PatientSchema.methods.social_history = function social_history() {
-  return this.getDataElements({ category: 'social_history' });
-};
-
-PatientSchema.methods.substances = function substances() {
-  return this.getDataElements({ category: 'substance' });
-};
-
-PatientSchema.methods.symptoms = function symptoms() {
-  return this.getDataElements({ category: 'symptom' });
-};
-
-PatientSchema.methods.system_characteristics = function system_characteristics() {
-  return this.getDataElements({ category: 'system_characteristic' });
-};
-
-PatientSchema.methods.transfers = function transfers() {
-  return this.getDataElements({ category: 'transfer' });
-};
-
-PatientSchema.methods.vital_signs = function vital_signs() {
-  return this.getDataElements({ category: 'vital_sign' });
-};
-
-module.exports.PatientSchema = PatientSchema;
-module.exports.Patient = mongoose.model('Patient', PatientSchema);