cql_qdm_patientapi 1.0.0

Sign up to get free protection for your applications and to get access to all the features.
Files changed (49) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +46 -0
  3. data/.travis.yml +15 -0
  4. data/Gemfile +8 -0
  5. data/Gemfile.lock +127 -0
  6. data/LICENSE +201 -0
  7. data/README.md +2 -0
  8. data/README.rdoc +2 -0
  9. data/Rakefile +32 -0
  10. data/app/assets/javascripts/cql_qdm_patientapi/.keep +0 -0
  11. data/app/assets/javascripts/cql_qdm_patientapi.js.coffee +3 -0
  12. data/app/assets/javascripts/cqlpatient.js.coffee +232 -0
  13. data/app/assets/javascripts/datatypes/adverseevent.js.coffee +70 -0
  14. data/app/assets/javascripts/datatypes/allergyintolerance.js.coffee +63 -0
  15. data/app/assets/javascripts/datatypes/assessment.js.coffee +159 -0
  16. data/app/assets/javascripts/datatypes/careexperience.js.coffee +47 -0
  17. data/app/assets/javascripts/datatypes/caregoal.js.coffee +60 -0
  18. data/app/assets/javascripts/datatypes/characteristic_birthdate.js.coffee +28 -0
  19. data/app/assets/javascripts/datatypes/communication.js.coffee +116 -0
  20. data/app/assets/javascripts/datatypes/datatype.js.coffee +44 -0
  21. data/app/assets/javascripts/datatypes/device.js.coffee +163 -0
  22. data/app/assets/javascripts/datatypes/diagnosis.js.coffee +67 -0
  23. data/app/assets/javascripts/datatypes/diagnosticstudy.js.coffee +215 -0
  24. data/app/assets/javascripts/datatypes/encounter.js.coffee +213 -0
  25. data/app/assets/javascripts/datatypes/familyhistory.js.coffee +37 -0
  26. data/app/assets/javascripts/datatypes/immunization.js.coffee +152 -0
  27. data/app/assets/javascripts/datatypes/intervention.js.coffee +164 -0
  28. data/app/assets/javascripts/datatypes/laboratorytest.js.coffee +243 -0
  29. data/app/assets/javascripts/datatypes/medication.js.coffee +486 -0
  30. data/app/assets/javascripts/datatypes/patient_characteristic.js.coffee +23 -0
  31. data/app/assets/javascripts/datatypes/patient_characteristic_expired.js.coffee +38 -0
  32. data/app/assets/javascripts/datatypes/patient_characteristic_payer.js.coffee +33 -0
  33. data/app/assets/javascripts/datatypes/patient_characteristic_sex.js.coffee +23 -0
  34. data/app/assets/javascripts/datatypes/physicalexam.js.coffee +223 -0
  35. data/app/assets/javascripts/datatypes/procedure.js.coffee +296 -0
  36. data/app/assets/javascripts/datatypes/substance.js.coffee +294 -0
  37. data/app/assets/javascripts/datatypes/symptom.js.coffee +49 -0
  38. data/app/assets/javascripts/types/component.js.coffee +71 -0
  39. data/app/assets/javascripts/types/facility.js.coffee +41 -0
  40. data/app/assets/javascripts/types/id.js.coffee +23 -0
  41. data/app/assets/javascripts/utils/helpers.js.coffee +101 -0
  42. data/bin/rails +12 -0
  43. data/coffeelint.json +135 -0
  44. data/cql_qdm_patientapi.gemspec +25 -0
  45. data/lib/cql_qdm_patientapi/engine.rb +6 -0
  46. data/lib/cql_qdm_patientapi/version.rb +3 -0
  47. data/lib/cql_qdm_patientapi.rb +4 -0
  48. data/vendor/assets/javascripts/cql4browsers.js +53992 -0
  49. metadata +133 -0
checksums.yaml ADDED
@@ -0,0 +1,7 @@
1
+ ---
2
+ SHA1:
3
+ metadata.gz: dbe2473809e9572c5e6475b384dea20cf906dce2
4
+ data.tar.gz: 98d854563f744b9e67de2662c694fd5a21164a8d
5
+ SHA512:
6
+ metadata.gz: eee837c9e03f8e4c79def4ca77ad250b478c37d01b10ece314fed301d74454ed1a0ba9c641f9cb033675590df656604aadecc9bb86c45ea5daca2887c955e866
7
+ data.tar.gz: ebbf0c18cd98de09872b99251d5fa138528c1bfdd49dec6b4a59d3a978ca4285f8fe763560d16571632d5b0df2f1bd033c63c43030d21f79fd6def478b982bbd
data/.gitignore ADDED
@@ -0,0 +1,46 @@
1
+ log/*.log
2
+ pkg/
3
+ test/dummy/db/*.sqlite3
4
+ test/dummy/db/*.sqlite3-journal
5
+ test/dummy/log/*.log
6
+ test/dummy/tmp/
7
+ test/dummy/.sass-cache
8
+
9
+ *.gem
10
+ *.rbc
11
+ /.config
12
+ /coverage/
13
+ /InstalledFiles
14
+ /pkg/
15
+ /spec/reports/
16
+ /spec/examples.txt
17
+ /test/tmp/
18
+ /test/version_tmp/
19
+ /tmp/
20
+
21
+ ## Specific to RubyMotion:
22
+ .dat*
23
+ .repl_history
24
+ build/
25
+
26
+ ## Documentation cache and generated files:
27
+ /.yardoc/
28
+ /_yardoc/
29
+ /doc/
30
+ /rdoc/
31
+
32
+ ## Environment normalization:
33
+ /.bundle/
34
+ /vendor/bundle
35
+ /lib/bundler/man/
36
+
37
+ # for a library or gem, you might want to ignore these files since the code is
38
+ # intended to run in multiple environments; otherwise, check them in:
39
+ # Gemfile.lock
40
+ # .ruby-version
41
+ # .ruby-gemset
42
+
43
+ # unless supporting rvm < 1.11.0 or doing something fancy, ignore this:
44
+ .rvmrc
45
+
46
+ .DS_Store
data/.travis.yml ADDED
@@ -0,0 +1,15 @@
1
+ sudo: false
2
+ language: ruby
3
+ rvm:
4
+ - 2.2.2
5
+ before_install:
6
+ - "sh -e /etc/init.d/xvfb start"
7
+ before_install: gem install bundler -v 1.15.3
8
+ script:
9
+ - export DISPLAY=:99.0
10
+ - bundle exec teaspoon
11
+ notifications:
12
+ email:
13
+ recipients:
14
+ - healthcare-ci@googlegroups.com
15
+ on_failure: change
data/Gemfile ADDED
@@ -0,0 +1,8 @@
1
+ source 'https://rubygems.org'
2
+
3
+ gemspec
4
+
5
+ group :development, :test do
6
+ gem "teaspoon-jasmine", "2.3.4"
7
+ gem "phantomjs"
8
+ end
data/Gemfile.lock ADDED
@@ -0,0 +1,127 @@
1
+ PATH
2
+ remote: .
3
+ specs:
4
+ cql_qdm_patientapi (1.0.0)
5
+ coffee-rails (~> 4.1)
6
+ rails (~> 4.2)
7
+ sprockets-rails (~> 2.3)
8
+
9
+ GEM
10
+ remote: https://rubygems.org/
11
+ specs:
12
+ actionmailer (4.2.10)
13
+ actionpack (= 4.2.10)
14
+ actionview (= 4.2.10)
15
+ activejob (= 4.2.10)
16
+ mail (~> 2.5, >= 2.5.4)
17
+ rails-dom-testing (~> 1.0, >= 1.0.5)
18
+ actionpack (4.2.10)
19
+ actionview (= 4.2.10)
20
+ activesupport (= 4.2.10)
21
+ rack (~> 1.6)
22
+ rack-test (~> 0.6.2)
23
+ rails-dom-testing (~> 1.0, >= 1.0.5)
24
+ rails-html-sanitizer (~> 1.0, >= 1.0.2)
25
+ actionview (4.2.10)
26
+ activesupport (= 4.2.10)
27
+ builder (~> 3.1)
28
+ erubis (~> 2.7.0)
29
+ rails-dom-testing (~> 1.0, >= 1.0.5)
30
+ rails-html-sanitizer (~> 1.0, >= 1.0.3)
31
+ activejob (4.2.10)
32
+ activesupport (= 4.2.10)
33
+ globalid (>= 0.3.0)
34
+ activemodel (4.2.10)
35
+ activesupport (= 4.2.10)
36
+ builder (~> 3.1)
37
+ activerecord (4.2.10)
38
+ activemodel (= 4.2.10)
39
+ activesupport (= 4.2.10)
40
+ arel (~> 6.0)
41
+ activesupport (4.2.10)
42
+ i18n (~> 0.7)
43
+ minitest (~> 5.1)
44
+ thread_safe (~> 0.3, >= 0.3.4)
45
+ tzinfo (~> 1.1)
46
+ arel (6.0.4)
47
+ builder (3.2.3)
48
+ coffee-rails (4.2.2)
49
+ coffee-script (>= 2.2.0)
50
+ railties (>= 4.0.0)
51
+ coffee-script (2.4.1)
52
+ coffee-script-source
53
+ execjs
54
+ coffee-script-source (1.12.2)
55
+ concurrent-ruby (1.0.5)
56
+ crass (1.0.2)
57
+ erubis (2.7.0)
58
+ execjs (2.7.0)
59
+ globalid (0.4.1)
60
+ activesupport (>= 4.2.0)
61
+ i18n (0.9.1)
62
+ concurrent-ruby (~> 1.0)
63
+ loofah (2.1.1)
64
+ crass (~> 1.0.2)
65
+ nokogiri (>= 1.5.9)
66
+ mail (2.7.0)
67
+ mini_mime (>= 0.1.1)
68
+ mini_mime (1.0.0)
69
+ mini_portile2 (2.3.0)
70
+ minitest (5.10.3)
71
+ nokogiri (1.8.1)
72
+ mini_portile2 (~> 2.3.0)
73
+ phantomjs (2.1.1.0)
74
+ rack (1.6.8)
75
+ rack-test (0.6.3)
76
+ rack (>= 1.0)
77
+ rails (4.2.10)
78
+ actionmailer (= 4.2.10)
79
+ actionpack (= 4.2.10)
80
+ actionview (= 4.2.10)
81
+ activejob (= 4.2.10)
82
+ activemodel (= 4.2.10)
83
+ activerecord (= 4.2.10)
84
+ activesupport (= 4.2.10)
85
+ bundler (>= 1.3.0, < 2.0)
86
+ railties (= 4.2.10)
87
+ sprockets-rails
88
+ rails-deprecated_sanitizer (1.0.3)
89
+ activesupport (>= 4.2.0.alpha)
90
+ rails-dom-testing (1.0.8)
91
+ activesupport (>= 4.2.0.beta, < 5.0)
92
+ nokogiri (~> 1.6)
93
+ rails-deprecated_sanitizer (>= 1.0.1)
94
+ rails-html-sanitizer (1.0.3)
95
+ loofah (~> 2.0)
96
+ railties (4.2.10)
97
+ actionpack (= 4.2.10)
98
+ activesupport (= 4.2.10)
99
+ rake (>= 0.8.7)
100
+ thor (>= 0.18.1, < 2.0)
101
+ rake (12.2.1)
102
+ sprockets (3.7.1)
103
+ concurrent-ruby (~> 1.0)
104
+ rack (> 1, < 3)
105
+ sprockets-rails (2.3.3)
106
+ actionpack (>= 3.0)
107
+ activesupport (>= 3.0)
108
+ sprockets (>= 2.8, < 4.0)
109
+ teaspoon (1.1.5)
110
+ railties (>= 3.2.5, < 6)
111
+ teaspoon-jasmine (2.3.4)
112
+ teaspoon (>= 1.0.0)
113
+ thor (0.20.0)
114
+ thread_safe (0.3.6)
115
+ tzinfo (1.2.4)
116
+ thread_safe (~> 0.1)
117
+
118
+ PLATFORMS
119
+ ruby
120
+
121
+ DEPENDENCIES
122
+ cql_qdm_patientapi!
123
+ phantomjs
124
+ teaspoon-jasmine (= 2.3.4)
125
+
126
+ BUNDLED WITH
127
+ 1.15.4
data/LICENSE ADDED
@@ -0,0 +1,201 @@
1
+ Apache License
2
+ Version 2.0, January 2004
3
+ http://www.apache.org/licenses/
4
+
5
+ TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
6
+
7
+ 1. Definitions.
8
+
9
+ "License" shall mean the terms and conditions for use, reproduction,
10
+ and distribution as defined by Sections 1 through 9 of this document.
11
+
12
+ "Licensor" shall mean the copyright owner or entity authorized by
13
+ the copyright owner that is granting the License.
14
+
15
+ "Legal Entity" shall mean the union of the acting entity and all
16
+ other entities that control, are controlled by, or are under common
17
+ control with that entity. For the purposes of this definition,
18
+ "control" means (i) the power, direct or indirect, to cause the
19
+ direction or management of such entity, whether by contract or
20
+ otherwise, or (ii) ownership of fifty percent (50%) or more of the
21
+ outstanding shares, or (iii) beneficial ownership of such entity.
22
+
23
+ "You" (or "Your") shall mean an individual or Legal Entity
24
+ exercising permissions granted by this License.
25
+
26
+ "Source" form shall mean the preferred form for making modifications,
27
+ including but not limited to software source code, documentation
28
+ source, and configuration files.
29
+
30
+ "Object" form shall mean any form resulting from mechanical
31
+ transformation or translation of a Source form, including but
32
+ not limited to compiled object code, generated documentation,
33
+ and conversions to other media types.
34
+
35
+ "Work" shall mean the work of authorship, whether in Source or
36
+ Object form, made available under the License, as indicated by a
37
+ copyright notice that is included in or attached to the work
38
+ (an example is provided in the Appendix below).
39
+
40
+ "Derivative Works" shall mean any work, whether in Source or Object
41
+ form, that is based on (or derived from) the Work and for which the
42
+ editorial revisions, annotations, elaborations, or other modifications
43
+ represent, as a whole, an original work of authorship. For the purposes
44
+ of this License, Derivative Works shall not include works that remain
45
+ separable from, or merely link (or bind by name) to the interfaces of,
46
+ the Work and Derivative Works thereof.
47
+
48
+ "Contribution" shall mean any work of authorship, including
49
+ the original version of the Work and any modifications or additions
50
+ to that Work or Derivative Works thereof, that is intentionally
51
+ submitted to Licensor for inclusion in the Work by the copyright owner
52
+ or by an individual or Legal Entity authorized to submit on behalf of
53
+ the copyright owner. For the purposes of this definition, "submitted"
54
+ means any form of electronic, verbal, or written communication sent
55
+ to the Licensor or its representatives, including but not limited to
56
+ communication on electronic mailing lists, source code control systems,
57
+ and issue tracking systems that are managed by, or on behalf of, the
58
+ Licensor for the purpose of discussing and improving the Work, but
59
+ excluding communication that is conspicuously marked or otherwise
60
+ designated in writing by the copyright owner as "Not a Contribution."
61
+
62
+ "Contributor" shall mean Licensor and any individual or Legal Entity
63
+ on behalf of whom a Contribution has been received by Licensor and
64
+ subsequently incorporated within the Work.
65
+
66
+ 2. Grant of Copyright License. Subject to the terms and conditions of
67
+ this License, each Contributor hereby grants to You a perpetual,
68
+ worldwide, non-exclusive, no-charge, royalty-free, irrevocable
69
+ copyright license to reproduce, prepare Derivative Works of,
70
+ publicly display, publicly perform, sublicense, and distribute the
71
+ Work and such Derivative Works in Source or Object form.
72
+
73
+ 3. Grant of Patent License. Subject to the terms and conditions of
74
+ this License, each Contributor hereby grants to You a perpetual,
75
+ worldwide, non-exclusive, no-charge, royalty-free, irrevocable
76
+ (except as stated in this section) patent license to make, have made,
77
+ use, offer to sell, sell, import, and otherwise transfer the Work,
78
+ where such license applies only to those patent claims licensable
79
+ by such Contributor that are necessarily infringed by their
80
+ Contribution(s) alone or by combination of their Contribution(s)
81
+ with the Work to which such Contribution(s) was submitted. If You
82
+ institute patent litigation against any entity (including a
83
+ cross-claim or counterclaim in a lawsuit) alleging that the Work
84
+ or a Contribution incorporated within the Work constitutes direct
85
+ or contributory patent infringement, then any patent licenses
86
+ granted to You under this License for that Work shall terminate
87
+ as of the date such litigation is filed.
88
+
89
+ 4. Redistribution. You may reproduce and distribute copies of the
90
+ Work or Derivative Works thereof in any medium, with or without
91
+ modifications, and in Source or Object form, provided that You
92
+ meet the following conditions:
93
+
94
+ (a) You must give any other recipients of the Work or
95
+ Derivative Works a copy of this License; and
96
+
97
+ (b) You must cause any modified files to carry prominent notices
98
+ stating that You changed the files; and
99
+
100
+ (c) You must retain, in the Source form of any Derivative Works
101
+ that You distribute, all copyright, patent, trademark, and
102
+ attribution notices from the Source form of the Work,
103
+ excluding those notices that do not pertain to any part of
104
+ the Derivative Works; and
105
+
106
+ (d) If the Work includes a "NOTICE" text file as part of its
107
+ distribution, then any Derivative Works that You distribute must
108
+ include a readable copy of the attribution notices contained
109
+ within such NOTICE file, excluding those notices that do not
110
+ pertain to any part of the Derivative Works, in at least one
111
+ of the following places: within a NOTICE text file distributed
112
+ as part of the Derivative Works; within the Source form or
113
+ documentation, if provided along with the Derivative Works; or,
114
+ within a display generated by the Derivative Works, if and
115
+ wherever such third-party notices normally appear. The contents
116
+ of the NOTICE file are for informational purposes only and
117
+ do not modify the License. You may add Your own attribution
118
+ notices within Derivative Works that You distribute, alongside
119
+ or as an addendum to the NOTICE text from the Work, provided
120
+ that such additional attribution notices cannot be construed
121
+ as modifying the License.
122
+
123
+ You may add Your own copyright statement to Your modifications and
124
+ may provide additional or different license terms and conditions
125
+ for use, reproduction, or distribution of Your modifications, or
126
+ for any such Derivative Works as a whole, provided Your use,
127
+ reproduction, and distribution of the Work otherwise complies with
128
+ the conditions stated in this License.
129
+
130
+ 5. Submission of Contributions. Unless You explicitly state otherwise,
131
+ any Contribution intentionally submitted for inclusion in the Work
132
+ by You to the Licensor shall be under the terms and conditions of
133
+ this License, without any additional terms or conditions.
134
+ Notwithstanding the above, nothing herein shall supersede or modify
135
+ the terms of any separate license agreement you may have executed
136
+ with Licensor regarding such Contributions.
137
+
138
+ 6. Trademarks. This License does not grant permission to use the trade
139
+ names, trademarks, service marks, or product names of the Licensor,
140
+ except as required for reasonable and customary use in describing the
141
+ origin of the Work and reproducing the content of the NOTICE file.
142
+
143
+ 7. Disclaimer of Warranty. Unless required by applicable law or
144
+ agreed to in writing, Licensor provides the Work (and each
145
+ Contributor provides its Contributions) on an "AS IS" BASIS,
146
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
147
+ implied, including, without limitation, any warranties or conditions
148
+ of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
149
+ PARTICULAR PURPOSE. You are solely responsible for determining the
150
+ appropriateness of using or redistributing the Work and assume any
151
+ risks associated with Your exercise of permissions under this License.
152
+
153
+ 8. Limitation of Liability. In no event and under no legal theory,
154
+ whether in tort (including negligence), contract, or otherwise,
155
+ unless required by applicable law (such as deliberate and grossly
156
+ negligent acts) or agreed to in writing, shall any Contributor be
157
+ liable to You for damages, including any direct, indirect, special,
158
+ incidental, or consequential damages of any character arising as a
159
+ result of this License or out of the use or inability to use the
160
+ Work (including but not limited to damages for loss of goodwill,
161
+ work stoppage, computer failure or malfunction, or any and all
162
+ other commercial damages or losses), even if such Contributor
163
+ has been advised of the possibility of such damages.
164
+
165
+ 9. Accepting Warranty or Additional Liability. While redistributing
166
+ the Work or Derivative Works thereof, You may choose to offer,
167
+ and charge a fee for, acceptance of support, warranty, indemnity,
168
+ or other liability obligations and/or rights consistent with this
169
+ License. However, in accepting such obligations, You may act only
170
+ on Your own behalf and on Your sole responsibility, not on behalf
171
+ of any other Contributor, and only if You agree to indemnify,
172
+ defend, and hold each Contributor harmless for any liability
173
+ incurred by, or claims asserted against, such Contributor by reason
174
+ of your accepting any such warranty or additional liability.
175
+
176
+ END OF TERMS AND CONDITIONS
177
+
178
+ APPENDIX: How to apply the Apache License to your work.
179
+
180
+ To apply the Apache License to your work, attach the following
181
+ boilerplate notice, with the fields enclosed by brackets "{}"
182
+ replaced with your own identifying information. (Don't include
183
+ the brackets!) The text should be enclosed in the appropriate
184
+ comment syntax for the file format. We also recommend that a
185
+ file or class name and description of purpose be included on the
186
+ same "printed page" as the copyright notice for easier
187
+ identification within third-party archives.
188
+
189
+ Copyright {yyyy} {name of copyright owner}
190
+
191
+ Licensed under the Apache License, Version 2.0 (the "License");
192
+ you may not use this file except in compliance with the License.
193
+ You may obtain a copy of the License at
194
+
195
+ http://www.apache.org/licenses/LICENSE-2.0
196
+
197
+ Unless required by applicable law or agreed to in writing, software
198
+ distributed under the License is distributed on an "AS IS" BASIS,
199
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
200
+ See the License for the specific language governing permissions and
201
+ limitations under the License.
data/README.md ADDED
@@ -0,0 +1,2 @@
1
+ # cql_qdm_patientapi
2
+ Interface from HDS patient model to QDM CQL execution engine
data/README.rdoc ADDED
@@ -0,0 +1,2 @@
1
+ = cql_qdm_patientapi
2
+ Interface from HDS patient model to QDM CQL execution engine
data/Rakefile ADDED
@@ -0,0 +1,32 @@
1
+ begin
2
+ require 'bundler/setup'
3
+ rescue LoadError
4
+ puts 'You must `gem install bundler` and `bundle install` to run rake tasks'
5
+ end
6
+
7
+ require 'rdoc/task'
8
+
9
+ RDoc::Task.new(:rdoc) do |rdoc|
10
+ rdoc.rdoc_dir = 'rdoc'
11
+ rdoc.title = 'CqlQdmPatientapi'
12
+ rdoc.options << '--line-numbers'
13
+ rdoc.rdoc_files.include('README.rdoc')
14
+ rdoc.rdoc_files.include('lib/**/*.rb')
15
+ end
16
+
17
+ # This allows `bundle exec rake teaspoon` to work from top dir instead of /test/
18
+ task :teaspoon do
19
+ sh 'bundle exec teaspoon', verbose: false
20
+ end
21
+
22
+ require 'rake/testtask'
23
+
24
+ Rake::TestTask.new(:test) do |t|
25
+ t.libs << 'lib'
26
+ t.libs << 'test'
27
+ t.pattern = 'test/**/*_test.rb'
28
+ t.verbose = false
29
+ end
30
+
31
+
32
+ task default: :test
File without changes
@@ -0,0 +1,3 @@
1
+ #= require utils/helpers
2
+ #= require datatypes/datatype
3
+ #= require_tree .