cql_qdm_patientapi 1.0.0
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- checksums.yaml +7 -0
- data/.gitignore +46 -0
- data/.travis.yml +15 -0
- data/Gemfile +8 -0
- data/Gemfile.lock +127 -0
- data/LICENSE +201 -0
- data/README.md +2 -0
- data/README.rdoc +2 -0
- data/Rakefile +32 -0
- data/app/assets/javascripts/cql_qdm_patientapi/.keep +0 -0
- data/app/assets/javascripts/cql_qdm_patientapi.js.coffee +3 -0
- data/app/assets/javascripts/cqlpatient.js.coffee +232 -0
- data/app/assets/javascripts/datatypes/adverseevent.js.coffee +70 -0
- data/app/assets/javascripts/datatypes/allergyintolerance.js.coffee +63 -0
- data/app/assets/javascripts/datatypes/assessment.js.coffee +159 -0
- data/app/assets/javascripts/datatypes/careexperience.js.coffee +47 -0
- data/app/assets/javascripts/datatypes/caregoal.js.coffee +60 -0
- data/app/assets/javascripts/datatypes/characteristic_birthdate.js.coffee +28 -0
- data/app/assets/javascripts/datatypes/communication.js.coffee +116 -0
- data/app/assets/javascripts/datatypes/datatype.js.coffee +44 -0
- data/app/assets/javascripts/datatypes/device.js.coffee +163 -0
- data/app/assets/javascripts/datatypes/diagnosis.js.coffee +67 -0
- data/app/assets/javascripts/datatypes/diagnosticstudy.js.coffee +215 -0
- data/app/assets/javascripts/datatypes/encounter.js.coffee +213 -0
- data/app/assets/javascripts/datatypes/familyhistory.js.coffee +37 -0
- data/app/assets/javascripts/datatypes/immunization.js.coffee +152 -0
- data/app/assets/javascripts/datatypes/intervention.js.coffee +164 -0
- data/app/assets/javascripts/datatypes/laboratorytest.js.coffee +243 -0
- data/app/assets/javascripts/datatypes/medication.js.coffee +486 -0
- data/app/assets/javascripts/datatypes/patient_characteristic.js.coffee +23 -0
- data/app/assets/javascripts/datatypes/patient_characteristic_expired.js.coffee +38 -0
- data/app/assets/javascripts/datatypes/patient_characteristic_payer.js.coffee +33 -0
- data/app/assets/javascripts/datatypes/patient_characteristic_sex.js.coffee +23 -0
- data/app/assets/javascripts/datatypes/physicalexam.js.coffee +223 -0
- data/app/assets/javascripts/datatypes/procedure.js.coffee +296 -0
- data/app/assets/javascripts/datatypes/substance.js.coffee +294 -0
- data/app/assets/javascripts/datatypes/symptom.js.coffee +49 -0
- data/app/assets/javascripts/types/component.js.coffee +71 -0
- data/app/assets/javascripts/types/facility.js.coffee +41 -0
- data/app/assets/javascripts/types/id.js.coffee +23 -0
- data/app/assets/javascripts/utils/helpers.js.coffee +101 -0
- data/bin/rails +12 -0
- data/coffeelint.json +135 -0
- data/cql_qdm_patientapi.gemspec +25 -0
- data/lib/cql_qdm_patientapi/engine.rb +6 -0
- data/lib/cql_qdm_patientapi/version.rb +3 -0
- data/lib/cql_qdm_patientapi.rb +4 -0
- data/vendor/assets/javascripts/cql4browsers.js +53992 -0
- metadata +133 -0
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###
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@namespace scoping into the CQL_QDM namespace (all classes and
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their methods will be accessable through the CQL_QDM namespace)
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###
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@CQL_QDM ||= {}
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###
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To meet criteria using this datatype, the communication indicated by the
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Communication QDM category and its corresponding value set must be
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communicated from a patient to a provider.
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###
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class CQL_QDM.CommunicationFromPatientToProvider extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
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###
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constructor: (@entry) ->
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super @entry
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@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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@_negationRationale = @entry.negationReason
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@_relatedTo = @entry.references
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###
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@returns {Date}
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###
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authorDatetime: ->
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@_authorDatetime
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###
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@returns {Code}
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###
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negationRationale: ->
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if @_negationRationale?
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new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
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else
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null
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###
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@returns {Array}
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###
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relatedTo: ->
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CQL_QDM.Helpers.relatedTo(@_relatedTo)
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###
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To meet criteria using this datatype, the communication indicated by the
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Communication QDM category and its corresponding value set must be
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communicated from a provider to a patient.
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###
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class CQL_QDM.CommunicationFromProviderToPatient extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
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###
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constructor: (@entry) ->
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super @entry
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@_negationRationale = @entry.negationReason
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@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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@_relatedTo = @entry.references
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###
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@returns {Code}
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###
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negationRationale: ->
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if @_negationRationale?
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new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
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else
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null
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###
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@returns {Date}
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###
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authorDatetime: ->
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@_authorDatetime
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###
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@returns {Array}
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###
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relatedTo: ->
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CQL_QDM.Helpers.relatedTo(@_relatedTo)
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###
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To meet criteria using this datatype, the communication indicated by the
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Communication QDM category and its corresponding value set must be
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communicated from one provider to another.
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###
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class CQL_QDM.CommunicationFromProviderToProvider extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
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###
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constructor: (@entry) ->
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super @entry
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@_negationRationale = @entry.negationReason
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@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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@_relatedTo = @entry.references
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###
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@returns {Code}
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###
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negationRationale: ->
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if @_negationRationale?
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new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
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else
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null
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###
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@returns {Date}
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###
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authorDatetime: ->
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@_authorDatetime
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###
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@returns {Array}
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###
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relatedTo: ->
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CQL_QDM.Helpers.relatedTo(@_relatedTo)
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###
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@namespace scoping into the CQL_QDM namespace (all classes and
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their methods will be accessable through the CQL_QDM namespace)
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###
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@CQL_QDM ||= {}
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###
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Base QDM datatype class; implements various functions that all implemented
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QDM datatypes must support.
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###
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class CQL_QDM.QDMDatatype
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constructor: (@entry) ->
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@_codes = @entry.codes
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###
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Returns any instances of this attribute currently within this namespace.
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@param {String} attribute - the QDM attribute to access
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@returns {Date|Code|Quantity|String}
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###
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get: (attribute) ->
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@[attribute]?()
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###
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@returns {Array}
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###
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getCode: ->
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allCodes = []
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for system, codes of @_codes
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for code in codes
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allCodes.push code: code
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allCodes
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Returns the QDM Id of this entry. If there is no entry for this instance, return null.
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@returns {Id}
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###
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id: ->
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if @entry?._id?
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return new CQL_QDM.Id(@entry._id)
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else
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null
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###
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@namespace scoping into the CQL_QDM namespace (all classes and
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their methods will be accessable through the CQL_QDM namespace)
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###
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@CQL_QDM ||= {}
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###
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Data elements that meet criteria using this datatype should document that the
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device indicated by the QDM category and its corresponding value set is in use,
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or impacts or alters the treatment, care plan, or encounter (e.g., an
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antithrombotic device has been placed on the patient's legs to prevent
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thromboembolism, or a cardiac pacemaker is in place).
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###
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class CQL_QDM.DeviceApplied extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
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###
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constructor: (@entry) ->
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super @entry
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@_anatomicalApproachSite = @entry.anatomical_approach
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@_anatomicalLocationSite = @entry.anatomical_location
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@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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@_negationRationale = @entry.negationReason
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@_reason = @entry.reason
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@_relevantPeriodLow = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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if @entry.end_time
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@_relevantPeriodHigh = CQL_QDM.Helpers.convertDateTime(@entry.end_time)
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else
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# No end time; high is set to infinity
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@_relevantPeriodHigh = CQL_QDM.Helpers.infinityDateTime()
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###
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@returns {Code}
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###
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anatomicalApproachSite: ->
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if @_anatomicalApproachSite?
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new cql.Code(@_anatomicalApproachSite.code, @_anatomicalApproachSite.code_system)
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else
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end
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###
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@returns {Code}
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###
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anatomicalLocationSite: ->
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if @_anatomicalLocationSite?
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new cql.Code(@_anatomicalLocationSite.code, @_anatomicalLocationSite.code_system)
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else
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null
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###
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Author date time is only present when this data type has been negated.
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@returns {Date}
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###
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authorDatetime: ->
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@_authorDatetime
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###
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@returns {Code}
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###
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negationRationale: ->
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if @_negationRationale?
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new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
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else
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null
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###
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@returns {Code}
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###
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reason: ->
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if @_reason?
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new cql.Code(@_reason.code, @_reason.code_system)
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else
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null
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###
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@returns {Interval<Date>}
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###
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relevantPeriod: ->
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low = @_relevantPeriodLow
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high = @_relevantPeriodHigh
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if low?
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new cql.Interval(low, high)
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else
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null
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###
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Data elements that meet criteria using this datatype should document an order
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for the device indicated by the QDM category and its corresponding value set.
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###
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class CQL_QDM.DeviceOrder extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
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###
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constructor: (@entry) ->
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super @entry
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@_negationRationale = @entry.negationReason
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@_reason = @entry.reason
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@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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###
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@returns {Code}
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###
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negationRationale: ->
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if @_negationRationale?
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new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
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else
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null
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###
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@returns {Code}
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###
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reason: ->
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if @_reason?
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new cql.Code(@_reason.code, @_reason.code_system)
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else
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null
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###
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@returns {Date}
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###
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authorDatetime: ->
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@_authorDatetime
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###
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Data elements that meet criteria using this datatype should document a
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recommendation to use the device indicated by the QDM category and its
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corresponding value set.
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###
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class CQL_QDM.DeviceRecommended extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
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###
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constructor: (@entry) ->
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super @entry
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@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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@_negationRationale = @entry.negationReason
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@_reason = @entry.reason
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###
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@returns {Date}
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###
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authorDatetime: ->
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@_authorDatetime
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###
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@returns {Code}
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###
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negationRationale: ->
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if @_negationRationale?
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new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
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else
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null
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###
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@returns {Code}
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###
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reason: ->
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if @_reason?
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new cql.Code(@_reason.code, @_reason.code_system)
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else
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null
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@@ -0,0 +1,67 @@
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###
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@namespace scoping into the CQL_QDM namespace (all classes and
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their methods will be accessable through the CQL_QDM namespace)
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###
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@CQL_QDM ||= {}
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###
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Data elements that meet criteria using this datatype should document the
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Condition/Diagnosis/Problem and its corresponding value set. The onset
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datetime corresponds to the implicit start datetime of the datatype and the
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abatement datetime corresponds to the implicit stop datetime of the datatype.
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If the abatement datetime is null, then the diagnosis is considered to still
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be active. When this datatype is used with timing relationships, the criterion
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is looking for an active diagnosis for the time frame indicated by the timing
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relationships.
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###
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class CQL_QDM.Diagnosis extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
|
21
|
+
###
|
22
|
+
constructor: (@entry) ->
|
23
|
+
super @entry
|
24
|
+
@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
|
25
|
+
@_prevalencePeriodLow = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
|
26
|
+
if @entry.end_time
|
27
|
+
@_prevalencePeriodHigh = CQL_QDM.Helpers.convertDateTime(@entry.end_time)
|
28
|
+
else
|
29
|
+
# No end time; high is set to infinity
|
30
|
+
@_prevalencePeriodHigh = CQL_QDM.Helpers.infinityDateTime()
|
31
|
+
@_anatomicalLocationSite = @entry.anatomical_location
|
32
|
+
@_severity = @entry.severity
|
33
|
+
|
34
|
+
###
|
35
|
+
@returns {Code}
|
36
|
+
###
|
37
|
+
anatomicalLocationSite: ->
|
38
|
+
if @_anatomicalLocationSite?
|
39
|
+
new cql.Code(@_anatomicalLocationSite.code, @_anatomicalLocationSite.code_system)
|
40
|
+
else
|
41
|
+
null
|
42
|
+
|
43
|
+
###
|
44
|
+
@returns {Interval<Date>}
|
45
|
+
###
|
46
|
+
prevalencePeriod: ->
|
47
|
+
low = @_prevalencePeriodLow
|
48
|
+
high = @_prevalencePeriodHigh
|
49
|
+
if low?
|
50
|
+
new cql.Interval(low, high)
|
51
|
+
else
|
52
|
+
null
|
53
|
+
|
54
|
+
###
|
55
|
+
@returns {Code}
|
56
|
+
###
|
57
|
+
severity: ->
|
58
|
+
if @_severity?
|
59
|
+
new cql.Code(@_severity.code, @_severity.code_system)
|
60
|
+
else
|
61
|
+
null
|
62
|
+
|
63
|
+
###
|
64
|
+
@returns {Date}
|
65
|
+
###
|
66
|
+
authorDatetime: ->
|
67
|
+
@_authorDatetime
|
@@ -0,0 +1,215 @@
|
|
1
|
+
###
|
2
|
+
@namespace scoping into the CQL_QDM namespace (all classes and
|
3
|
+
their methods will be accessable through the CQL_QDM namespace)
|
4
|
+
###
|
5
|
+
@CQL_QDM ||= {}
|
6
|
+
|
7
|
+
###
|
8
|
+
Data elements that meet criteria using this datatype should document a request
|
9
|
+
by a clinician or appropriately licensed care provider to an appropriate
|
10
|
+
provider or organization to perform the diagnostic study indicated by the QDM
|
11
|
+
category and its corresponding value set. The request may be in the form of a
|
12
|
+
consultation or a direct order to the organization that performs the diagnostic
|
13
|
+
study. Diagnostic studies are those that are not performed in the clinical
|
14
|
+
laboratory. Such studies include but are not limited to imaging studies,
|
15
|
+
cardiology studies (electrocardiogram, treadmill stress testing), pulmonary
|
16
|
+
function testing, vascular laboratory testing, and others.
|
17
|
+
###
|
18
|
+
class CQL_QDM.DiagnosticStudyOrder extends CQL_QDM.QDMDatatype
|
19
|
+
###
|
20
|
+
@param {Object} entry - the HDS data criteria object to convert
|
21
|
+
###
|
22
|
+
constructor: (@entry) ->
|
23
|
+
super @entry
|
24
|
+
@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
|
25
|
+
@_method = @entry.method
|
26
|
+
@_negationRationale = @entry.negationReason
|
27
|
+
@_reason = @entry.reason
|
28
|
+
|
29
|
+
###
|
30
|
+
@returns {Date}
|
31
|
+
###
|
32
|
+
authorDatetime: ->
|
33
|
+
@_authorDatetime
|
34
|
+
|
35
|
+
###
|
36
|
+
@returns {Code}
|
37
|
+
###
|
38
|
+
method: ->
|
39
|
+
if @_method?
|
40
|
+
new cql.Code(@_method.code, @_method.code_system)
|
41
|
+
else
|
42
|
+
null
|
43
|
+
|
44
|
+
###
|
45
|
+
@returns {Code}
|
46
|
+
###
|
47
|
+
negationRationale: ->
|
48
|
+
if @_negationRationale?
|
49
|
+
new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
|
50
|
+
else
|
51
|
+
null
|
52
|
+
|
53
|
+
###
|
54
|
+
@returns {Code}
|
55
|
+
###
|
56
|
+
reason: ->
|
57
|
+
if @_reason?
|
58
|
+
new cql.Code(@_reason.code, @_reason.code_system)
|
59
|
+
else
|
60
|
+
null
|
61
|
+
|
62
|
+
|
63
|
+
###
|
64
|
+
Data elements that meet criteria using this datatype should document the
|
65
|
+
completion of the diagnostic study indicated by the QDM category and its
|
66
|
+
corresponding value set.
|
67
|
+
###
|
68
|
+
class CQL_QDM.DiagnosticStudyPerformed extends CQL_QDM.QDMDatatype
|
69
|
+
###
|
70
|
+
@param {Object} entry - the HDS data criteria object to convert
|
71
|
+
###
|
72
|
+
constructor: (@entry) ->
|
73
|
+
super @entry
|
74
|
+
@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
|
75
|
+
@_facilityLocation = @entry.facility
|
76
|
+
@_method = @entry.method
|
77
|
+
@_negationRationale = @entry.negationReason
|
78
|
+
@_reason = @entry.reason
|
79
|
+
if @entry.values? && @entry.values.length > 0
|
80
|
+
@_result = @entry.values?[0]
|
81
|
+
@_resultDatetime = CQL_QDM.Helpers.convertDateTime(@entry.result_date_time)
|
82
|
+
@_relevantPeriodLow = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
|
83
|
+
if @entry.end_time
|
84
|
+
@_relevantPeriodHigh = CQL_QDM.Helpers.convertDateTime(@entry.end_time)
|
85
|
+
else
|
86
|
+
# No end time; high is set to infinity
|
87
|
+
@_relevantPeriodHigh = CQL_QDM.Helpers.infinityDateTime()
|
88
|
+
@_status = @entry.status
|
89
|
+
@_components = @entry.components
|
90
|
+
|
91
|
+
|
92
|
+
###
|
93
|
+
Author date time is only present when this data type has been negated.
|
94
|
+
@returns {Date}
|
95
|
+
###
|
96
|
+
authorDatetime: ->
|
97
|
+
@_authorDatetime
|
98
|
+
|
99
|
+
###
|
100
|
+
@returns {FacilityLocation}
|
101
|
+
###
|
102
|
+
facilityLocation: ->
|
103
|
+
if @_facilityLocation?.values?[0]?
|
104
|
+
new CQL_QDM.FacilityLocation(@_facilityLocation.values[0])
|
105
|
+
else
|
106
|
+
null
|
107
|
+
|
108
|
+
###
|
109
|
+
@returns {Code}
|
110
|
+
###
|
111
|
+
method: ->
|
112
|
+
if @_method?
|
113
|
+
new cql.Code(@_method.code, @_method.code_system)
|
114
|
+
else
|
115
|
+
null
|
116
|
+
|
117
|
+
###
|
118
|
+
@returns {Code}
|
119
|
+
###
|
120
|
+
negationRationale: ->
|
121
|
+
if @_negationRationale?
|
122
|
+
new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
|
123
|
+
else
|
124
|
+
null
|
125
|
+
|
126
|
+
###
|
127
|
+
@returns {Code}
|
128
|
+
###
|
129
|
+
reason: ->
|
130
|
+
if @_reason?
|
131
|
+
new cql.Code(@_reason.code, @_reason.code_system)
|
132
|
+
else
|
133
|
+
null
|
134
|
+
|
135
|
+
###
|
136
|
+
@returns {Interval<Date>}
|
137
|
+
###
|
138
|
+
relevantPeriod: ->
|
139
|
+
low = @_relevantPeriodLow
|
140
|
+
high = @_relevantPeriodHigh
|
141
|
+
if low?
|
142
|
+
new cql.Interval(low, high)
|
143
|
+
else
|
144
|
+
null
|
145
|
+
|
146
|
+
###
|
147
|
+
The model_info_file also lists Integer, Decimal, and Ratio.
|
148
|
+
Decimal and Integer are covered under Quantity with a nil unit.
|
149
|
+
Ratio is not yet supported with CQL although it appears in the QDM model.
|
150
|
+
@returns {Code|Quantity}
|
151
|
+
###
|
152
|
+
result: ->
|
153
|
+
CQL_QDM.Helpers.formatResult(@_result)
|
154
|
+
|
155
|
+
###
|
156
|
+
@returns {Date}
|
157
|
+
###
|
158
|
+
resultDatetime: ->
|
159
|
+
@_resultDatetime
|
160
|
+
|
161
|
+
###
|
162
|
+
@returns {Code}
|
163
|
+
###
|
164
|
+
status: ->
|
165
|
+
if @_status?
|
166
|
+
new cql.Code(@_status.code, @_status.code_system)
|
167
|
+
else
|
168
|
+
null
|
169
|
+
|
170
|
+
###
|
171
|
+
@returns {Array}
|
172
|
+
###
|
173
|
+
components: ->
|
174
|
+
CQL_QDM.Helpers.components(@_components)
|
175
|
+
|
176
|
+
|
177
|
+
###
|
178
|
+
Data elements that meet criteria using this datatype should document a
|
179
|
+
recommendation for a request by a clinician or appropriately licensed care
|
180
|
+
provider to an appropriate provider or organization to perform the diagnostic
|
181
|
+
study indicated by the QDM category and its corresponding value set.
|
182
|
+
###
|
183
|
+
class CQL_QDM.DiagnosticStudyRecommended extends CQL_QDM.QDMDatatype
|
184
|
+
###
|
185
|
+
@param {Object} entry - the HDS data criteria object to convert
|
186
|
+
###
|
187
|
+
constructor: (@entry) ->
|
188
|
+
super @entry
|
189
|
+
@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
|
190
|
+
@_method = @entry.method
|
191
|
+
@_negationRationale = @entry.negationReason
|
192
|
+
|
193
|
+
###
|
194
|
+
@returns {Date}
|
195
|
+
###
|
196
|
+
authorDatetime: ->
|
197
|
+
@_authorDatetime
|
198
|
+
|
199
|
+
###
|
200
|
+
@returns {Code}
|
201
|
+
###
|
202
|
+
method: ->
|
203
|
+
if @_method?
|
204
|
+
new cql.Code(@_method.code, @_method.code_system)
|
205
|
+
else
|
206
|
+
null
|
207
|
+
|
208
|
+
###
|
209
|
+
@returns {Code}
|
210
|
+
###
|
211
|
+
negationRationale: ->
|
212
|
+
if @_negationRationale?
|
213
|
+
new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
|
214
|
+
else
|
215
|
+
null
|