cql_qdm_patientapi 1.0.0
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- checksums.yaml +7 -0
- data/.gitignore +46 -0
- data/.travis.yml +15 -0
- data/Gemfile +8 -0
- data/Gemfile.lock +127 -0
- data/LICENSE +201 -0
- data/README.md +2 -0
- data/README.rdoc +2 -0
- data/Rakefile +32 -0
- data/app/assets/javascripts/cql_qdm_patientapi/.keep +0 -0
- data/app/assets/javascripts/cql_qdm_patientapi.js.coffee +3 -0
- data/app/assets/javascripts/cqlpatient.js.coffee +232 -0
- data/app/assets/javascripts/datatypes/adverseevent.js.coffee +70 -0
- data/app/assets/javascripts/datatypes/allergyintolerance.js.coffee +63 -0
- data/app/assets/javascripts/datatypes/assessment.js.coffee +159 -0
- data/app/assets/javascripts/datatypes/careexperience.js.coffee +47 -0
- data/app/assets/javascripts/datatypes/caregoal.js.coffee +60 -0
- data/app/assets/javascripts/datatypes/characteristic_birthdate.js.coffee +28 -0
- data/app/assets/javascripts/datatypes/communication.js.coffee +116 -0
- data/app/assets/javascripts/datatypes/datatype.js.coffee +44 -0
- data/app/assets/javascripts/datatypes/device.js.coffee +163 -0
- data/app/assets/javascripts/datatypes/diagnosis.js.coffee +67 -0
- data/app/assets/javascripts/datatypes/diagnosticstudy.js.coffee +215 -0
- data/app/assets/javascripts/datatypes/encounter.js.coffee +213 -0
- data/app/assets/javascripts/datatypes/familyhistory.js.coffee +37 -0
- data/app/assets/javascripts/datatypes/immunization.js.coffee +152 -0
- data/app/assets/javascripts/datatypes/intervention.js.coffee +164 -0
- data/app/assets/javascripts/datatypes/laboratorytest.js.coffee +243 -0
- data/app/assets/javascripts/datatypes/medication.js.coffee +486 -0
- data/app/assets/javascripts/datatypes/patient_characteristic.js.coffee +23 -0
- data/app/assets/javascripts/datatypes/patient_characteristic_expired.js.coffee +38 -0
- data/app/assets/javascripts/datatypes/patient_characteristic_payer.js.coffee +33 -0
- data/app/assets/javascripts/datatypes/patient_characteristic_sex.js.coffee +23 -0
- data/app/assets/javascripts/datatypes/physicalexam.js.coffee +223 -0
- data/app/assets/javascripts/datatypes/procedure.js.coffee +296 -0
- data/app/assets/javascripts/datatypes/substance.js.coffee +294 -0
- data/app/assets/javascripts/datatypes/symptom.js.coffee +49 -0
- data/app/assets/javascripts/types/component.js.coffee +71 -0
- data/app/assets/javascripts/types/facility.js.coffee +41 -0
- data/app/assets/javascripts/types/id.js.coffee +23 -0
- data/app/assets/javascripts/utils/helpers.js.coffee +101 -0
- data/bin/rails +12 -0
- data/coffeelint.json +135 -0
- data/cql_qdm_patientapi.gemspec +25 -0
- data/lib/cql_qdm_patientapi/engine.rb +6 -0
- data/lib/cql_qdm_patientapi/version.rb +3 -0
- data/lib/cql_qdm_patientapi.rb +4 -0
- data/vendor/assets/javascripts/cql4browsers.js +53992 -0
- metadata +133 -0
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###
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@namespace scoping into the CQL_QDM namespace (all classes and
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their methods will be accessable through the CQL_QDM namespace)
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###
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@CQL_QDM ||= {}
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###
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Data elements that meet criteria using this datatype should document that an
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order for the encounter indicated by the QDM category and its corresponding
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value set has been recommended.
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###
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class CQL_QDM.EncounterOrder extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
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###
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constructor: (@entry) ->
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super @entry
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@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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@_facilityLocation = @entry.facility
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@_negationRationale = @entry.negationReason
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@_reason = @entry.reason
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###
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@returns {Date}
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###
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authorDatetime: ->
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@_authorDatetime
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###
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@returns {FacilityLocation}
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###
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facilityLocation: ->
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if @_facilityLocation?.values?[0]?
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new CQL_QDM.FacilityLocation(@_facilityLocation.values[0])
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else
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null
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###
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@returns {Code}
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###
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negationRationale: ->
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if @_negationRationale?
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new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
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else
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null
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###
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@returns {Code}
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###
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reason: ->
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if @_reason?
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new cql.Code(@_reason.code, @_reason.code_system)
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else
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null
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###
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Data elements that meet criteria using this datatype should document that the
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encounter indicated by the QDM category and its corresponding value set has
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been completed.
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###
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class CQL_QDM.EncounterPerformed extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
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###
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constructor: (@entry) ->
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super @entry
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@_admissionSource = @entry.admission_source
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@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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@_diagnoses = @entry.diagnosis
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@_dischargeDisposition = @entry.dischargeDisposition
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@_facilityLocations = @entry.facility
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@_negationRationale = @entry.negationReason
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@_relevantPeriodLow = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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if @entry.end_time
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@_relevantPeriodHigh = CQL_QDM.Helpers.convertDateTime(@entry.end_time)
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else
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# No end time; high is set to infinity
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@_relevantPeriodHigh = CQL_QDM.Helpers.infinityDateTime()
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@_principalDiagnosis = @entry.principalDiagnosis
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###
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@returns {Code}
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###
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admissionSource: ->
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if @_admissionSource?
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new cql.Code(@_admissionSource.code, @_admissionSource.code_system)
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else
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null
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###
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Author date time is only present when this data type has been negated.
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@returns {Date}
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###
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authorDatetime: ->
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@_authorDatetime
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###
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@returns {Array}
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###
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diagnoses: ->
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CQL_QDM.Helpers.diagnoses(@_diagnoses, @_principalDiagnosis)
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###
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@returns {Code}
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###
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dischargeDisposition: ->
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if @_dischargeDisposition?
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new cql.Code(@_dischargeDisposition.code, @_dischargeDisposition.code_system)
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else
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null
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###
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@returns {Array}
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###
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facilityLocations: ->
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# For Encounter Performed, there can be multiple Facility Locations
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facilityLocations = []
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if @_facilityLocations?
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for facility in @_facilityLocations.values
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if facility?
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facilityLocations.push new CQL_QDM.FacilityLocation(facility)
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facilityLocations
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###
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@returns {Quantity}
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###
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lengthOfStay: ->
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low = @_relevantPeriodLow
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high = @_relevantPeriodHigh
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if low?
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new cql.Quantity({unit: 'days', value: low.differenceBetween(high, 'day')?.high})
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else
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null
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###
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@returns {Code}
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###
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negationRationale: ->
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if @_negationRationale?
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new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
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else
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null
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###
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@returns {Interval<Date>}
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###
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relevantPeriod: ->
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low = @_relevantPeriodLow
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high = @_relevantPeriodHigh
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if low?
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new cql.Interval(low, high)
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else
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null
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###
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@returns {Code}
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###
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principalDiagnosis: ->
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if @_principalDiagnosis?
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new cql.Code(@_principalDiagnosis.code, @_principalDiagnosis.code_system)
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else
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null
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###
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Data elements that meet criteria using this datatype should document that the
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encounter indicated by the QDM category and its corresponding value set has been
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recommended.
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###
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class CQL_QDM.EncounterRecommended extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
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###
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constructor: (@entry) ->
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super @entry
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@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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@_facilityLocation = @entry.facility
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@_negationRationale = @entry.negationReason
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@_reason = @entry.reason
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###
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@returns {Date}
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###
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authorDatetime: ->
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@_authorDatetime
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###
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@returns {FacilityLocation}
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###
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facilityLocation: ->
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if @_facilityLocation?.values?[0]?
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new CQL_QDM.FacilityLocation(@_facilityLocation.values[0])
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else
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null
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###
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@returns {Code}
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###
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negationRationale: ->
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if @_negationRationale?
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new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
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else
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null
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###
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@returns {Code}
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###
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reason: ->
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if @_reason?
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new cql.Code(@_reason.code, @_reason.code_system)
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else
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null
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###
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@namespace scoping into the CQL_QDM namespace (all classes and
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their methods will be accessable through the CQL_QDM namespace)
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###
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@CQL_QDM ||= {}
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###
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To meet criteria using this datatype, the diagnosis/problem indicated by the
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FamilyHistory QDM category and its corresponding value set should reflect a
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diagnosis/problem of a family member. When used in timing relationships, the
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recorded datetime acts as both the implicit start datetime and implicit stop
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datetime.
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###
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class CQL_QDM.FamilyHistory extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
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###
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constructor: (@entry) ->
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super @entry
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@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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@_relationship = @entry.relationshipToPatient
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###
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@returns {Date}
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###
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authorDatetime: ->
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@_authorDatetime
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###
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@returns {Code}
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###
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relationship: ->
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if @_relationship?
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new cql.Code(@_relationship.code, @_relationship.code_system)
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else
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null
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###
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@namespace scoping into the CQL_QDM namespace (all classes and
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their methods will be accessable through the CQL_QDM namespace)
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###
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@CQL_QDM ||= {}
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###
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Data elements that meet criteria using this datatype should document that the
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vaccine indicated by the QDM category and its corresponding value set was
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actually administered to the patient.
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###
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class CQL_QDM.ImmunizationAdministered extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
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###
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constructor: (@entry) ->
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super @entry
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@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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@_dosage = @entry.dose
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@_negationRationale = @entry.negationReason
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@_reason = @entry.reason
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@_route = @entry.route
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@_supply = @entry.supply
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###
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@returns {Date}
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###
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authorDatetime: ->
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@_authorDatetime
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###
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@returns {Quantity}
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###
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dosage: ->
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if @_dosage?
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new cql.Quantity({unit: @_dosage['unit'], value: @_dosage['value']})
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else
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null
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###
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@returns {Code}
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###
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negationRationale: ->
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if @_negationRationale?
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new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
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else
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null
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###
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@returns {Code}
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###
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reason: ->
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if @_reason?
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new cql.Code(@_reason.code, @_reason.code_system)
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else
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null
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###
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@returns {Code}
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###
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route: ->
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if @_route?
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new cql.Code(@_route.code, @_route.code_system)
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else
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null
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###
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@returns {Quantity}
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###
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supply: ->
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if @_supply?
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new cql.Quantity({unit: @_supply['unit'], value: @_supply['value']})
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else
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null
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###
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Data elements that meet criteria using this datatype should document a request
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for the immunization indicated by the QDM category and its corresponding value
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set.
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###
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class CQL_QDM.ImmunizationOrder extends CQL_QDM.QDMDatatype
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###
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@param {Object} entry - the HDS data criteria object to convert
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###
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constructor: (@entry) ->
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super @entry
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@_activeDatetime = CQL_QDM.Helpers.convertDateTime(@entry.active_datetime)
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@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
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@_dosage = @entry.dose
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@_negationRationale = @entry.negationReason
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@_reason = @entry.reason
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@_route = @entry.route
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@_supply = @entry.supply
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+
|
97
|
+
###
|
98
|
+
@returns {Date}
|
99
|
+
###
|
100
|
+
activeDatetime: ->
|
101
|
+
@_activeDatetime
|
102
|
+
|
103
|
+
###
|
104
|
+
@returns {Date}
|
105
|
+
###
|
106
|
+
authorDatetime: ->
|
107
|
+
@_authorDatetime
|
108
|
+
|
109
|
+
###
|
110
|
+
@returns {Quantity}
|
111
|
+
###
|
112
|
+
dosage: ->
|
113
|
+
if @_dosage?
|
114
|
+
new cql.Quantity({unit: @_dosage['unit'], value: @_dosage['value']})
|
115
|
+
else
|
116
|
+
null
|
117
|
+
|
118
|
+
###
|
119
|
+
@returns {Code}
|
120
|
+
###
|
121
|
+
negationRationale: ->
|
122
|
+
if @_negationRationale?
|
123
|
+
new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
|
124
|
+
else
|
125
|
+
null
|
126
|
+
|
127
|
+
###
|
128
|
+
@returns {Code}
|
129
|
+
###
|
130
|
+
reason: ->
|
131
|
+
if @_reason?
|
132
|
+
new cql.Code(@_reason.code, @_reason.code_system)
|
133
|
+
else
|
134
|
+
null
|
135
|
+
|
136
|
+
###
|
137
|
+
@returns {Code}
|
138
|
+
###
|
139
|
+
route: ->
|
140
|
+
if @_route?
|
141
|
+
new cql.Code(@_route.code, @_route.code_system)
|
142
|
+
else
|
143
|
+
null
|
144
|
+
|
145
|
+
###
|
146
|
+
@returns {Quantity}
|
147
|
+
###
|
148
|
+
supply: ->
|
149
|
+
if @_supply?
|
150
|
+
new cql.Quantity({unit: @_supply['unit'], value: @_supply['value']})
|
151
|
+
else
|
152
|
+
null
|
@@ -0,0 +1,164 @@
|
|
1
|
+
###
|
2
|
+
@namespace scoping into the CQL_QDM namespace (all classes and
|
3
|
+
their methods will be accessable through the CQL_QDM namespace)
|
4
|
+
###
|
5
|
+
@CQL_QDM ||= {}
|
6
|
+
|
7
|
+
|
8
|
+
###
|
9
|
+
Data elements that meet criteria using this datatype should document a request
|
10
|
+
to perform the intervention indicated by the QDM category and its corresponding
|
11
|
+
value set.
|
12
|
+
###
|
13
|
+
class CQL_QDM.InterventionOrder extends CQL_QDM.QDMDatatype
|
14
|
+
###
|
15
|
+
@param {Object} entry - the HDS data criteria object to convert
|
16
|
+
###
|
17
|
+
constructor: (@entry) ->
|
18
|
+
super @entry
|
19
|
+
@_negationRationale = @entry.negationReason
|
20
|
+
@_reason = @entry.reason
|
21
|
+
@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
|
22
|
+
|
23
|
+
###
|
24
|
+
@returns {Date}
|
25
|
+
###
|
26
|
+
authorDatetime: ->
|
27
|
+
@_authorDatetime
|
28
|
+
|
29
|
+
###
|
30
|
+
@returns {Code}
|
31
|
+
###
|
32
|
+
negationRationale: ->
|
33
|
+
if @_negationRationale?
|
34
|
+
new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
|
35
|
+
else
|
36
|
+
null
|
37
|
+
|
38
|
+
###
|
39
|
+
@returns {Code}
|
40
|
+
###
|
41
|
+
reason: ->
|
42
|
+
if @_reason?
|
43
|
+
new cql.Code(@_reason.code, @_reason.code_system)
|
44
|
+
else
|
45
|
+
null
|
46
|
+
|
47
|
+
|
48
|
+
###
|
49
|
+
Data elements that meet criteria using this datatype should document the
|
50
|
+
completion of the intervention indicated by the QDM category and its
|
51
|
+
corresponding value set.
|
52
|
+
###
|
53
|
+
class CQL_QDM.InterventionPerformed extends CQL_QDM.QDMDatatype
|
54
|
+
###
|
55
|
+
@param {Object} entry - the HDS data criteria object to convert
|
56
|
+
###
|
57
|
+
constructor: (@entry) ->
|
58
|
+
super @entry
|
59
|
+
@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
|
60
|
+
@_negationRationale = @entry.negationReason
|
61
|
+
@_reason = @entry.reason
|
62
|
+
@_relevantPeriodLow = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
|
63
|
+
if @entry.end_time
|
64
|
+
@_relevantPeriodHigh = CQL_QDM.Helpers.convertDateTime(@entry.end_time)
|
65
|
+
else
|
66
|
+
# No end time; high is set to infinity
|
67
|
+
@_relevantPeriodHigh = CQL_QDM.Helpers.infinityDateTime()
|
68
|
+
if @entry.values? && @entry.values.length > 0
|
69
|
+
@_result = @entry.values?[0]
|
70
|
+
@_status = @entry.status
|
71
|
+
|
72
|
+
###
|
73
|
+
Author date time is only present when this data type has been negated.
|
74
|
+
@returns {Date}
|
75
|
+
###
|
76
|
+
authorDatetime: ->
|
77
|
+
@_authorDatetime
|
78
|
+
|
79
|
+
###
|
80
|
+
@returns {Code}
|
81
|
+
###
|
82
|
+
negationRationale: ->
|
83
|
+
if @_negationRationale?
|
84
|
+
new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
|
85
|
+
else
|
86
|
+
null
|
87
|
+
|
88
|
+
###
|
89
|
+
@returns {Code}
|
90
|
+
###
|
91
|
+
reason: ->
|
92
|
+
if @_reason?
|
93
|
+
new cql.Code(@_reason.code, @_reason.code_system)
|
94
|
+
else
|
95
|
+
null
|
96
|
+
|
97
|
+
###
|
98
|
+
@returns {Interval<Date>}
|
99
|
+
###
|
100
|
+
relevantPeriod: ->
|
101
|
+
low = @_relevantPeriodLow
|
102
|
+
high = @_relevantPeriodHigh
|
103
|
+
if low?
|
104
|
+
new cql.Interval(low, high)
|
105
|
+
else
|
106
|
+
null
|
107
|
+
|
108
|
+
###
|
109
|
+
The model_info_file also lists Integer, Decimal, and Ratio.
|
110
|
+
Decimal and Integer are covered under Quantity with a nil unit.
|
111
|
+
Ratio is not yet supported with CQL although it appears in the QDM model.
|
112
|
+
@returns {Code|Quantity}
|
113
|
+
###
|
114
|
+
result: ->
|
115
|
+
CQL_QDM.Helpers.formatResult(@_result)
|
116
|
+
|
117
|
+
###
|
118
|
+
@returns {Code}
|
119
|
+
###
|
120
|
+
status: ->
|
121
|
+
if @_status?
|
122
|
+
new cql.Code(@_status.code, @_status.code_system)
|
123
|
+
else
|
124
|
+
null
|
125
|
+
|
126
|
+
|
127
|
+
###
|
128
|
+
Data elements that meet criteria using this datatype should document a
|
129
|
+
recommendation for the intervention indicated by the QDM category and its
|
130
|
+
corresponding value set.
|
131
|
+
###
|
132
|
+
class CQL_QDM.InterventionRecommended extends CQL_QDM.QDMDatatype
|
133
|
+
###
|
134
|
+
@param {Object} entry - the HDS data criteria object to convert
|
135
|
+
###
|
136
|
+
constructor: (@entry) ->
|
137
|
+
super @entry
|
138
|
+
@_authorDatetime = CQL_QDM.Helpers.convertDateTime(@entry.start_time)
|
139
|
+
@_negationRationale = @entry.negationReason
|
140
|
+
@_reason = @entry.reason
|
141
|
+
|
142
|
+
###
|
143
|
+
@returns {Date}
|
144
|
+
###
|
145
|
+
authorDatetime: ->
|
146
|
+
@_authorDatetime
|
147
|
+
|
148
|
+
###
|
149
|
+
@returns {Code}
|
150
|
+
###
|
151
|
+
negationRationale: ->
|
152
|
+
if @_negationRationale?
|
153
|
+
new cql.Code(@_negationRationale.code, @_negationRationale.code_system)
|
154
|
+
else
|
155
|
+
null
|
156
|
+
|
157
|
+
###
|
158
|
+
@returns {Code}
|
159
|
+
###
|
160
|
+
reason: ->
|
161
|
+
if @_reason?
|
162
|
+
new cql.Code(@_reason.code, @_reason.code_system)
|
163
|
+
else
|
164
|
+
null
|