conceptql 0.3.0 → 0.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1208) hide show
  1. checksums.yaml +5 -5
  2. data/CHANGELOG.md +228 -27
  3. data/LICENSE +21 -0
  4. data/README.md +28 -98
  5. data/bin/conceptql +2 -1
  6. data/bin/conceptql_utils +6 -0
  7. data/config/multiple_vocabularies.csv +4 -0
  8. data/config/provenance.yml +471 -436
  9. data/config/race.yml +50 -0
  10. data/config/vocabularies.csv +87 -0
  11. data/lib/conceptql/behaviors/code_lister.rb +23 -0
  12. data/lib/conceptql/behaviors/drugish.rb +13 -8
  13. data/lib/conceptql/behaviors/labish.rb +15 -9
  14. data/lib/conceptql/behaviors/metadatable.rb +102 -34
  15. data/lib/conceptql/behaviors/provenanceable.rb +15 -19
  16. data/lib/conceptql/behaviors/single_event.rb +11 -0
  17. data/lib/conceptql/behaviors/timeless.rb +11 -0
  18. data/lib/conceptql/behaviors/utilizable.rb +206 -0
  19. data/lib/conceptql/behaviors/windowable.rb +27 -0
  20. data/lib/conceptql/cli.rb +99 -134
  21. data/lib/conceptql/columnizer.rb +75 -0
  22. data/lib/conceptql/data_model/base.rb +462 -0
  23. data/lib/conceptql/data_model/gdm.rb +155 -0
  24. data/lib/conceptql/data_model/gdm_wide.rb +42 -0
  25. data/lib/conceptql/data_model/omopv4_plus.rb +12 -0
  26. data/lib/conceptql/data_model.rb +30 -0
  27. data/lib/conceptql/database.rb +195 -23
  28. data/lib/conceptql/date_adjuster.rb +57 -27
  29. data/lib/conceptql/diagram.rb +243 -0
  30. data/lib/conceptql/lexicon/lexicon_gdm.rb +47 -0
  31. data/lib/conceptql/lexicon/lexicon_no_db.rb +49 -0
  32. data/lib/conceptql/lexicon/lexicon_ohdsi.rb +63 -0
  33. data/lib/conceptql/lexicon/lexicon_strategy.rb +116 -0
  34. data/lib/conceptql/lexicon.rb +111 -0
  35. data/lib/conceptql/nodifier.rb +45 -15
  36. data/lib/conceptql/operators/after.rb +24 -21
  37. data/lib/conceptql/operators/any_overlap.rb +6 -6
  38. data/lib/conceptql/operators/before.rb +24 -16
  39. data/lib/conceptql/operators/binary_operator_operator.rb +52 -13
  40. data/lib/conceptql/operators/casting_operator.rb +24 -17
  41. data/lib/conceptql/operators/co_reported.rb +78 -9
  42. data/lib/conceptql/operators/concurrent_within.rb +29 -17
  43. data/lib/conceptql/operators/contains.rb +9 -9
  44. data/lib/conceptql/operators/count.rb +9 -9
  45. data/lib/conceptql/operators/date_range.rb +40 -18
  46. data/lib/conceptql/operators/death.rb +10 -2
  47. data/lib/conceptql/operators/dedup.rb +31 -0
  48. data/lib/conceptql/operators/during.rb +5 -12
  49. data/lib/conceptql/operators/episode.rb +146 -0
  50. data/lib/conceptql/operators/equal.rb +6 -3
  51. data/lib/conceptql/operators/ethnicity.rb +49 -0
  52. data/lib/conceptql/operators/except.rb +15 -20
  53. data/lib/conceptql/operators/filter.rb +20 -8
  54. data/lib/conceptql/operators/first.rb +14 -3
  55. data/lib/conceptql/operators/from.rb +33 -12
  56. data/lib/conceptql/operators/gender.rb +27 -11
  57. data/lib/conceptql/operators/hospice.rb +19 -0
  58. data/lib/conceptql/operators/hospitalization.rb +19 -0
  59. data/lib/conceptql/operators/information_periods.rb +36 -0
  60. data/lib/conceptql/operators/invalid.rb +4 -5
  61. data/lib/conceptql/operators/last.rb +14 -3
  62. data/lib/conceptql/operators/match.rb +91 -0
  63. data/lib/conceptql/operators/multiple_vocabularies.rb +172 -0
  64. data/lib/conceptql/operators/numeric.rb +52 -29
  65. data/lib/conceptql/operators/numeric_filter.rb +68 -0
  66. data/lib/conceptql/operators/occurrence.rb +133 -48
  67. data/lib/conceptql/operators/one_in_two_out.rb +198 -62
  68. data/lib/conceptql/operators/operator.rb +321 -408
  69. data/lib/conceptql/operators/pass_thru.rb +9 -5
  70. data/lib/conceptql/operators/person.rb +12 -2
  71. data/lib/conceptql/operators/person_filter.rb +5 -3
  72. data/lib/conceptql/operators/place_of_service_filter.rb +11 -15
  73. data/lib/conceptql/operators/provenance.rb +25 -36
  74. data/lib/conceptql/operators/provider_filter.rb +40 -14
  75. data/lib/conceptql/operators/race.rb +48 -7
  76. data/lib/conceptql/operators/read.rb +77 -58
  77. data/lib/conceptql/operators/recall.rb +20 -20
  78. data/lib/conceptql/operators/snf.rb +19 -0
  79. data/lib/conceptql/operators/sum.rb +23 -12
  80. data/lib/conceptql/operators/temporal_operator.rb +80 -54
  81. data/lib/conceptql/operators/time_window.rb +13 -15
  82. data/lib/conceptql/operators/trim_date.rb +71 -0
  83. data/lib/conceptql/operators/trim_date_end.rb +20 -40
  84. data/lib/conceptql/operators/trim_date_start.rb +20 -43
  85. data/lib/conceptql/operators/union.rb +59 -35
  86. data/lib/conceptql/operators/vocabulary.rb +151 -0
  87. data/lib/conceptql/paths.rb +41 -0
  88. data/lib/conceptql/query.rb +168 -46
  89. data/lib/conceptql/query_modifiers/gdm/admission_date_query_modifier.rb +46 -0
  90. data/lib/conceptql/query_modifiers/gdm/drug_query_modifier.rb +54 -0
  91. data/lib/conceptql/query_modifiers/gdm/lab_query_modifier.rb +57 -0
  92. data/lib/conceptql/query_modifiers/gdm/pos_query_modifier.rb +46 -0
  93. data/lib/conceptql/query_modifiers/gdm/provenance_query_modifier.rb +45 -0
  94. data/lib/conceptql/query_modifiers/gdm/provider_query_modifier.rb +53 -0
  95. data/lib/conceptql/query_modifiers/gdm_wide/admission_date_query_modifier.rb +42 -0
  96. data/lib/conceptql/query_modifiers/gdm_wide/drug_query_modifier.rb +52 -0
  97. data/lib/conceptql/query_modifiers/gdm_wide/lab_query_modifier.rb +55 -0
  98. data/lib/conceptql/query_modifiers/gdm_wide/pos_query_modifier.rb +37 -0
  99. data/lib/conceptql/query_modifiers/gdm_wide/provenance_query_modifier.rb +38 -0
  100. data/lib/conceptql/query_modifiers/omopv4_plus/admission_date_query_modifier.rb +45 -0
  101. data/lib/conceptql/query_modifiers/omopv4_plus/drug_query_modifier.rb +80 -0
  102. data/lib/conceptql/query_modifiers/omopv4_plus/pos_query_modifier.rb +47 -0
  103. data/lib/conceptql/query_modifiers/omopv4_plus/provenance_query_modifier.rb +45 -0
  104. data/lib/conceptql/query_modifiers/omopv4_plus/provider_query_modifier.rb +26 -0
  105. data/lib/conceptql/query_modifiers/query_modifier.rb +6 -2
  106. data/lib/conceptql/rdbms/duckdb.rb +21 -0
  107. data/lib/conceptql/rdbms/generic.rb +116 -0
  108. data/lib/conceptql/rdbms/postgres.rb +47 -0
  109. data/lib/conceptql/rdbms/spark.rb +18 -0
  110. data/lib/conceptql/rdbms.rb +22 -0
  111. data/lib/conceptql/scope.rb +353 -41
  112. data/lib/conceptql/utils.rb +70 -0
  113. data/lib/conceptql/utils_cli.rb +17 -0
  114. data/lib/conceptql/version.rb +3 -1
  115. data/lib/conceptql/visitors/metadata_extractor.rb +54 -0
  116. data/lib/conceptql/vocabularies/behaviors/costish.rb +24 -0
  117. data/lib/conceptql/vocabularies/behaviors/gdmish.rb +19 -0
  118. data/lib/conceptql/vocabularies/behaviors/omopish.rb +32 -0
  119. data/lib/conceptql/vocabularies/dynamic_vocabularies.rb +63 -0
  120. data/lib/conceptql/vocabularies/entry.rb +138 -0
  121. data/lib/conceptql/vocabularies/vocabulary_class_factory.rb +85 -0
  122. data/lib/conceptql/window/base.rb +26 -0
  123. data/lib/conceptql/window/date_range.rb +25 -0
  124. data/lib/conceptql/window/table.rb +116 -0
  125. data/lib/conceptql/window.rb +72 -0
  126. data/lib/conceptql.rb +53 -10
  127. data/lib/sequel/extensions/pg_ctas_explain.rb +22 -0
  128. data/lib/sequel/extensions/pg_vacuum_table.rb +23 -0
  129. data/schemas/gdm.yml +882 -0
  130. data/schemas/gdm_wide.yml +757 -0
  131. data/schemas/ohdsi_vocabs.yml +143 -0
  132. data/schemas/omopv4_plus.yml +729 -0
  133. data/schemas/omopv4_plus_more_ignorables.tsv +13 -0
  134. metadata +271 -2065
  135. data/.gitignore +0 -25
  136. data/Gemfile +0 -6
  137. data/Guardfile +0 -56
  138. data/LICENSE.txt +0 -22
  139. data/Rakefile +0 -35
  140. data/conceptql.gemspec +0 -31
  141. data/doc/ConceptQL Specification (alpha).pdf +0 -0
  142. data/doc/converter.rb +0 -33
  143. data/doc/diagram_0.png +0 -0
  144. data/doc/implementation_notes.md +0 -39
  145. data/doc/metadata.md +0 -89
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  211. data/doc/spec.md +0 -2258
  212. data/doc/spec.md.cql +0 -1930
  213. data/lib/conceptql/annotate_grapher.rb +0 -127
  214. data/lib/conceptql/fake_annotater.rb +0 -129
  215. data/lib/conceptql/knitter.rb +0 -221
  216. data/lib/conceptql/logger.rb +0 -10
  217. data/lib/conceptql/operators/complement.rb +0 -43
  218. data/lib/conceptql/operators/condition_occurrence_source_vocabulary_operator.rb +0 -34
  219. data/lib/conceptql/operators/condition_occurrence_source_vocabulary_operator_union.rb +0 -28
  220. data/lib/conceptql/operators/condition_type.rb +0 -79
  221. data/lib/conceptql/operators/cpt.rb +0 -28
  222. data/lib/conceptql/operators/cpt_or_hcpcs.rb +0 -27
  223. data/lib/conceptql/operators/drg.rb +0 -42
  224. data/lib/conceptql/operators/drug_type_concept.rb +0 -30
  225. data/lib/conceptql/operators/from_seer_visits.rb +0 -29
  226. data/lib/conceptql/operators/hcpcs.rb +0 -28
  227. data/lib/conceptql/operators/icd10.rb +0 -19
  228. data/lib/conceptql/operators/icd10_pcs.rb +0 -28
  229. data/lib/conceptql/operators/icd9.rb +0 -19
  230. data/lib/conceptql/operators/icd9_procedure.rb +0 -28
  231. data/lib/conceptql/operators/intersect.rb +0 -39
  232. data/lib/conceptql/operators/loinc.rb +0 -28
  233. data/lib/conceptql/operators/medcode.rb +0 -17
  234. data/lib/conceptql/operators/medcode_procedure.rb +0 -28
  235. data/lib/conceptql/operators/ndc.rb +0 -32
  236. data/lib/conceptql/operators/observation_by_enttype.rb +0 -32
  237. data/lib/conceptql/operators/observation_period.rb +0 -32
  238. data/lib/conceptql/operators/overlapped_by.rb +0 -26
  239. data/lib/conceptql/operators/overlaps.rb +0 -21
  240. data/lib/conceptql/operators/place_of_service_code.rb +0 -31
  241. data/lib/conceptql/operators/procedure_occurrence.rb +0 -27
  242. data/lib/conceptql/operators/prodcode.rb +0 -32
  243. data/lib/conceptql/operators/revenue_code.rb +0 -40
  244. data/lib/conceptql/operators/rxnorm.rb +0 -28
  245. data/lib/conceptql/operators/snomed.rb +0 -25
  246. data/lib/conceptql/operators/source_vocabulary_operator.rb +0 -88
  247. data/lib/conceptql/operators/standard_vocabulary_operator.rb +0 -66
  248. data/lib/conceptql/operators/started_by.rb +0 -23
  249. data/lib/conceptql/operators/to_seer_visits.rb +0 -29
  250. data/lib/conceptql/operators/visit_occurrence.rb +0 -32
  251. data/lib/conceptql/operators/vocabulary_operator.rb +0 -45
  252. data/lib/conceptql/query_modifiers/drug_query_modifier.rb +0 -45
  253. data/lib/conceptql/query_modifiers/pos_query_modifier.rb +0 -31
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  772. data/test/results/omopv4_plus/from_seer_visits/crit_4 +0 -2
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  818. data/test/results/omopv4_plus/one_in_two_out/count_1 +0 -3
  819. data/test/results/omopv4_plus/one_in_two_out/count_same_as_1 +0 -3
  820. data/test/results/omopv4_plus/one_in_two_out/crit_hcpcs +0 -2
  821. data/test/results/omopv4_plus/one_in_two_out/crit_icd9 +0 -19
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- "Open Rad Ul Other dx"
696
- ]
697
- ],
698
- [
699
- "visit_occurrence",
700
- [
701
- "hcpcs",
702
- "24650",
703
- "24655",
704
- "24665",
705
- "24666",
706
- "24670",
707
- "24675",
708
- "24685",
709
- "25500",
710
- "25505",
711
- "25515",
712
- "25520",
713
- "25525",
714
- "25526",
715
- "25530",
716
- "25535",
717
- "25545",
718
- "25560",
719
- "25565",
720
- "25574",
721
- "25575"
722
- ]
723
- ],
724
- [
725
- "recall",
726
- "Outpatient Claims"
727
- ]
728
- ],
729
- {
730
- "label": "Open Rad Ul Other"
731
- }
732
- ],
733
- [
734
- "union",
735
- [
736
- "intersect",
737
- [
738
- "visit_occurrence",
739
- [
740
- "recall",
741
- "Closed Prox Humerus dx"
742
- ]
743
- ],
744
- [
745
- "visit_occurrence",
746
- [
747
- "hcpcs",
748
- "23600",
749
- "23605",
750
- "23615",
751
- "23616",
752
- "23520",
753
- "23625",
754
- "23630",
755
- "23665",
756
- "24500",
757
- "24505",
758
- "24515",
759
- "24516",
760
- "24530",
761
- "24535",
762
- "24538",
763
- "24545",
764
- "24546",
765
- "24560",
766
- "24565",
767
- "24566",
768
- "24575",
769
- "24576",
770
- "24577",
771
- "24579",
772
- "24582"
773
- ]
774
- ],
775
- [
776
- "recall",
777
- "Outpatient Claims"
778
- ]
779
- ],
780
- [
781
- "intersect",
782
- [
783
- "place_of_service_code",
784
- "21"
785
- ],
786
- [
787
- "visit_occurrence",
788
- [
789
- "icd9",
790
- "812.0",
791
- "733.11",
792
- {
793
- "label": "Closed Prox Humerus dx"
794
- }
795
- ]
796
- ]
797
- ],
798
- {
799
- "label": "Closed Prox Humerus"
800
- }
801
- ],
802
- [
803
- "union",
804
- [
805
- "intersect",
806
- [
807
- "place_of_service_code",
808
- "21"
809
- ],
810
- [
811
- "visit_occurrence",
812
- [
813
- "icd9",
814
- "812.2",
815
- "812.4",
816
- "733.11",
817
- {
818
- "label": "Closed Humerus Oth dx"
819
- }
820
- ]
821
- ]
822
- ],
823
- [
824
- "intersect",
825
- [
826
- "recall",
827
- "Outpatient Claims"
828
- ],
829
- [
830
- "visit_occurrence",
831
- [
832
- "recall",
833
- "Closed Humerus Oth dx"
834
- ]
835
- ],
836
- [
837
- "visit_occurrence",
838
- [
839
- "hcpcs",
840
- "23600",
841
- "23605",
842
- "23615",
843
- "23616",
844
- "23520",
845
- "23625",
846
- "23630",
847
- "23665",
848
- "24500",
849
- "24505",
850
- "24515",
851
- "24516",
852
- "24530",
853
- "24535",
854
- "24538",
855
- "24545",
856
- "24546",
857
- "24560",
858
- "24565",
859
- "24566",
860
- "24575",
861
- "24576",
862
- "24577",
863
- "24579",
864
- "24582"
865
- ]
866
- ]
867
- ],
868
- {
869
- "label": "Closed Humerus Other"
870
- }
871
- ],
872
- [
873
- "union",
874
- [
875
- "intersect",
876
- [
877
- "place_of_service_code",
878
- "21"
879
- ],
880
- [
881
- "visit_occurrence",
882
- [
883
- "icd9",
884
- "812.2",
885
- "812.5",
886
- {
887
- "label": "Open Humerus Oth dx"
888
- }
889
- ]
890
- ]
891
- ],
892
- [
893
- "intersect",
894
- [
895
- "recall",
896
- "Outpatient Claims"
897
- ],
898
- [
899
- "visit_occurrence",
900
- [
901
- "hcpcs",
902
- "23600",
903
- "23605",
904
- "23615",
905
- "23616",
906
- "23520",
907
- "23625",
908
- "23630",
909
- "23665",
910
- "24500",
911
- "24505",
912
- "24515",
913
- "24516",
914
- "24530",
915
- "24535",
916
- "24538",
917
- "24545",
918
- "24546",
919
- "24560",
920
- "24565",
921
- "24566",
922
- "24575",
923
- "24576",
924
- "24577",
925
- "24579",
926
- "24582"
927
- ]
928
- ],
929
- [
930
- "visit_occurrence",
931
- [
932
- "recall",
933
- "Open Humerus Oth dx"
934
- ]
935
- ]
936
- ],
937
- {
938
- "label": "Open Humerus Other"
939
- }
940
- ],
941
- [
942
- "union",
943
- [
944
- "intersect",
945
- [
946
- "place_of_service_code",
947
- "21"
948
- ],
949
- [
950
- "visit_occurrence",
951
- [
952
- "icd9",
953
- "818.0",
954
- "818.1",
955
- {
956
- "label": "Ill Def Up Limb dx"
957
- }
958
- ]
959
- ]
960
- ],
961
- [
962
- "intersect",
963
- [
964
- "recall",
965
- "Outpatient Claims"
966
- ],
967
- [
968
- "visit_occurrence",
969
- [
970
- "recall",
971
- "Ill Def Up Limb dx"
972
- ]
973
- ],
974
- [
975
- "visit_occurrence",
976
- [
977
- "hcpcs",
978
- "24400",
979
- "24410",
980
- "24430",
981
- "24435",
982
- "24500",
983
- "24505",
984
- "24515",
985
- "24516",
986
- "01742",
987
- "01744",
988
- "73060",
989
- "24620",
990
- "24635",
991
- "24650",
992
- "24655",
993
- "24665",
994
- "24666",
995
- "24670",
996
- "24675",
997
- "24685",
998
- "25500",
999
- "25505",
1000
- "25515",
1001
- "25520",
1002
- "25525",
1003
- "25526",
1004
- "25530",
1005
- "25535",
1006
- "25545",
1007
- "25560",
1008
- "25565",
1009
- "25574",
1010
- "25575"
1011
- ]
1012
- ]
1013
- ],
1014
- {
1015
- "label": "Ill-def Fx of Upper Limb"
1016
- }
1017
- ],
1018
- [
1019
- "union",
1020
- [
1021
- "intersect",
1022
- [
1023
- "place_of_service_code",
1024
- "21"
1025
- ],
1026
- [
1027
- "visit_occurrence",
1028
- [
1029
- "icd9",
1030
- "805.0",
1031
- "805.2",
1032
- "805.4",
1033
- "805.8",
1034
- "806.0",
1035
- "806.2",
1036
- "806.4",
1037
- "806.8",
1038
- "733.13",
1039
- {
1040
- "label": "Closed Vertebral dx"
1041
- }
1042
- ]
1043
- ]
1044
- ],
1045
- [
1046
- "intersect",
1047
- [
1048
- "recall",
1049
- "Outpatient Claims"
1050
- ],
1051
- [
1052
- "visit_occurrence",
1053
- [
1054
- "recall",
1055
- "Closed Vertebral dx"
1056
- ]
1057
- ],
1058
- [
1059
- "union",
1060
- [
1061
- "visit_occurrence",
1062
- [
1063
- "hcpcs",
1064
- "63003",
1065
- "63016",
1066
- "63085",
1067
- "63086",
1068
- "63087",
1069
- "63088",
1070
- "63090",
1071
- "63091",
1072
- "63101",
1073
- "63103",
1074
- "76012",
1075
- "76013",
1076
- "22305",
1077
- "22310",
1078
- "22315",
1079
- "22318",
1080
- "22319",
1081
- "22325",
1082
- "22326",
1083
- "22327",
1084
- "22328",
1085
- "72010",
1086
- "72020",
1087
- "72040",
1088
- "72050",
1089
- "72052",
1090
- "72069",
1091
- "72070",
1092
- "72072",
1093
- "72074",
1094
- "72080",
1095
- "72090",
1096
- "72100",
1097
- "72110",
1098
- "72114",
1099
- "72120",
1100
- "72125",
1101
- "72126",
1102
- "72127",
1103
- "72128",
1104
- "72129",
1105
- "72130",
1106
- "72131",
1107
- "72132",
1108
- "72133",
1109
- "72141",
1110
- "72142",
1111
- "72146",
1112
- "72147",
1113
- "72148",
1114
- "72149",
1115
- "72156",
1116
- "72157",
1117
- "72158",
1118
- "72159",
1119
- "72240",
1120
- "72255",
1121
- "72265",
1122
- "72270",
1123
- "72275",
1124
- "72285",
1125
- "72295"
1126
- ]
1127
- ],
1128
- [
1129
- "intersect",
1130
- [
1131
- "visit_occurrence",
1132
- [
1133
- "hcpcs",
1134
- "22520",
1135
- "22521",
1136
- "22522",
1137
- "22523",
1138
- "22524",
1139
- "22525",
1140
- "S2360",
1141
- "S2361",
1142
- "S2362"
1143
- ]
1144
- ],
1145
- [
1146
- "visit_occurrence",
1147
- [
1148
- "hcpcs",
1149
- "72291",
1150
- "72292",
1151
- "S2363"
1152
- ]
1153
- ]
1154
- ]
1155
- ]
1156
- ],
1157
- {
1158
- "label": "Closed Vertebral"
1159
- }
1160
- ],
1161
- [
1162
- "union",
1163
- [
1164
- "intersect",
1165
- [
1166
- "visit_occurrence",
1167
- [
1168
- "icd9",
1169
- "805.1",
1170
- "805.3",
1171
- "805.5",
1172
- "805.9",
1173
- "806.1",
1174
- "806.3",
1175
- "806.5",
1176
- "806.9",
1177
- {
1178
- "label": "Open Vertebral dx"
1179
- }
1180
- ]
1181
- ],
1182
- [
1183
- "place_of_service_code",
1184
- "21"
1185
- ]
1186
- ],
1187
- [
1188
- "intersect",
1189
- [
1190
- "recall",
1191
- "Outpatient Claims"
1192
- ],
1193
- [
1194
- "visit_occurrence",
1195
- [
1196
- "recall",
1197
- "Open Vertebral dx"
1198
- ]
1199
- ],
1200
- [
1201
- "union",
1202
- [
1203
- "visit_occurrence",
1204
- [
1205
- "hcpcs",
1206
- "63003",
1207
- "63016",
1208
- "63085",
1209
- "63086",
1210
- "63087",
1211
- "63088",
1212
- "63090",
1213
- "63091",
1214
- "63101",
1215
- "63103",
1216
- "76012",
1217
- "76013",
1218
- "22305",
1219
- "22310",
1220
- "22315",
1221
- "22318",
1222
- "22319",
1223
- "22325",
1224
- "22326",
1225
- "22327",
1226
- "22328",
1227
- "72020",
1228
- "72040",
1229
- "72050",
1230
- "72052",
1231
- "72069",
1232
- "72070",
1233
- "72072",
1234
- "72074",
1235
- "72080",
1236
- "72090",
1237
- "72100",
1238
- "72110",
1239
- "72114",
1240
- "72120",
1241
- "72125",
1242
- "72126",
1243
- "72127",
1244
- "72128",
1245
- "72129",
1246
- "72130",
1247
- "72131",
1248
- "72132",
1249
- "72133",
1250
- "72141",
1251
- "72142",
1252
- "72146",
1253
- "72147",
1254
- "72148",
1255
- "72149",
1256
- "72156",
1257
- "72157",
1258
- "72158",
1259
- "72159",
1260
- "72240",
1261
- "72255",
1262
- "72265",
1263
- "72270",
1264
- "72275",
1265
- "72285",
1266
- "72295"
1267
- ]
1268
- ],
1269
- [
1270
- "intersect",
1271
- [
1272
- "visit_occurrence",
1273
- [
1274
- "hcpcs",
1275
- "22520",
1276
- "22521",
1277
- "22522",
1278
- "22523",
1279
- "22524",
1280
- "22525",
1281
- "S2360",
1282
- "S2361",
1283
- "S2362"
1284
- ]
1285
- ],
1286
- [
1287
- "visit_occurrence",
1288
- [
1289
- "hcpcs",
1290
- "72291",
1291
- "72292",
1292
- "S2363"
1293
- ]
1294
- ]
1295
- ]
1296
- ]
1297
- ],
1298
- {
1299
- "label": "Open Vertebral"
1300
- }
1301
- ],
1302
- [
1303
- "union",
1304
- [
1305
- "intersect",
1306
- [
1307
- "place_of_service_code",
1308
- "21"
1309
- ],
1310
- [
1311
- "visit_occurrence",
1312
- [
1313
- "icd9",
1314
- "807.0",
1315
- {
1316
- "label": "Closed Rib dx"
1317
- }
1318
- ]
1319
- ]
1320
- ],
1321
- [
1322
- "intersect",
1323
- [
1324
- "recall",
1325
- "Outpatient Claims"
1326
- ],
1327
- [
1328
- "visit_occurrence",
1329
- [
1330
- "recall",
1331
- "Closed Rib dx"
1332
- ]
1333
- ],
1334
- [
1335
- "visit_occurrence",
1336
- [
1337
- "hcpcs",
1338
- "21800",
1339
- "21805",
1340
- "21810"
1341
- ]
1342
- ]
1343
- ],
1344
- {
1345
- "label": "Closed Rib"
1346
- }
1347
- ],
1348
- [
1349
- "union",
1350
- [
1351
- "intersect",
1352
- [
1353
- "place_of_service_code",
1354
- "21"
1355
- ],
1356
- [
1357
- "visit_occurrence",
1358
- [
1359
- "icd9",
1360
- "807.1",
1361
- {
1362
- "label": "Open Rib dx"
1363
- }
1364
- ]
1365
- ]
1366
- ],
1367
- [
1368
- "intersect",
1369
- [
1370
- "recall",
1371
- "Outpatient Claims"
1372
- ],
1373
- [
1374
- "visit_occurrence",
1375
- [
1376
- "recall",
1377
- "Open Rib dx"
1378
- ]
1379
- ],
1380
- [
1381
- "visit_occurrence",
1382
- [
1383
- "hcpcs",
1384
- "21800",
1385
- "21805",
1386
- "21810"
1387
- ]
1388
- ]
1389
- ],
1390
- {
1391
- "label": "Open Rib"
1392
- }
1393
- ],
1394
- [
1395
- "union",
1396
- [
1397
- "intersect",
1398
- [
1399
- "place_of_service_code",
1400
- "21"
1401
- ],
1402
- [
1403
- "visit_occurrence",
1404
- [
1405
- "icd9",
1406
- "805.6",
1407
- "806.6",
1408
- {
1409
- "label": "Closed Sac Cocc dx"
1410
- }
1411
- ]
1412
- ]
1413
- ],
1414
- [
1415
- "intersect",
1416
- [
1417
- "recall",
1418
- "Outpatient Claims"
1419
- ],
1420
- [
1421
- "visit_occurrence",
1422
- [
1423
- "recall",
1424
- "Closed Sac Cocc dx"
1425
- ]
1426
- ],
1427
- [
1428
- "visit_occurrence",
1429
- [
1430
- "hcpcs",
1431
- "72220"
1432
- ]
1433
- ]
1434
- ],
1435
- {
1436
- "label": "Closed Sacrum Coccyx"
1437
- }
1438
- ],
1439
- [
1440
- "union",
1441
- [
1442
- "intersect",
1443
- [
1444
- "place_of_service_code",
1445
- "21"
1446
- ],
1447
- [
1448
- "visit_occurrence",
1449
- [
1450
- "icd9",
1451
- "805.7",
1452
- "806.7",
1453
- {
1454
- "label": "Open Sac Cocc dx"
1455
- }
1456
- ]
1457
- ]
1458
- ],
1459
- [
1460
- "intersect",
1461
- [
1462
- "visit_occurrence",
1463
- [
1464
- "recall",
1465
- "Open Sac Cocc dx"
1466
- ]
1467
- ],
1468
- [
1469
- "recall",
1470
- "Outpatient Claims"
1471
- ],
1472
- [
1473
- "visit_occurrence",
1474
- [
1475
- "hcpcs",
1476
- "72220"
1477
- ]
1478
- ]
1479
- ],
1480
- {
1481
- "label": "Open Sacrum Coccyx"
1482
- }
1483
- ],
1484
- {
1485
- "label": "Fractures"
1486
- }
1487
- ],
1488
- "right": [
1489
- "time_window",
1490
- [
1491
- "intersect",
1492
- [
1493
- "gender",
1494
- "Male"
1495
- ],
1496
- [
1497
- "race",
1498
- "Black or African American"
1499
- ]
1500
- ],
1501
- {
1502
- "start": "65y",
1503
- "end": "80y-1d",
1504
- "label": "65-79 Years Old"
1505
- }
1506
- ]
1507
- }
1508
- ]