conceptql 0.3.0 → 0.4.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1208) hide show
  1. checksums.yaml +5 -5
  2. data/CHANGELOG.md +228 -27
  3. data/LICENSE +21 -0
  4. data/README.md +28 -98
  5. data/bin/conceptql +2 -1
  6. data/bin/conceptql_utils +6 -0
  7. data/config/multiple_vocabularies.csv +4 -0
  8. data/config/provenance.yml +471 -436
  9. data/config/race.yml +50 -0
  10. data/config/vocabularies.csv +87 -0
  11. data/lib/conceptql/behaviors/code_lister.rb +23 -0
  12. data/lib/conceptql/behaviors/drugish.rb +13 -8
  13. data/lib/conceptql/behaviors/labish.rb +15 -9
  14. data/lib/conceptql/behaviors/metadatable.rb +102 -34
  15. data/lib/conceptql/behaviors/provenanceable.rb +15 -19
  16. data/lib/conceptql/behaviors/single_event.rb +11 -0
  17. data/lib/conceptql/behaviors/timeless.rb +11 -0
  18. data/lib/conceptql/behaviors/utilizable.rb +206 -0
  19. data/lib/conceptql/behaviors/windowable.rb +27 -0
  20. data/lib/conceptql/cli.rb +99 -134
  21. data/lib/conceptql/columnizer.rb +75 -0
  22. data/lib/conceptql/data_model/base.rb +462 -0
  23. data/lib/conceptql/data_model/gdm.rb +155 -0
  24. data/lib/conceptql/data_model/gdm_wide.rb +42 -0
  25. data/lib/conceptql/data_model/omopv4_plus.rb +12 -0
  26. data/lib/conceptql/data_model.rb +30 -0
  27. data/lib/conceptql/database.rb +195 -23
  28. data/lib/conceptql/date_adjuster.rb +57 -27
  29. data/lib/conceptql/diagram.rb +243 -0
  30. data/lib/conceptql/lexicon/lexicon_gdm.rb +47 -0
  31. data/lib/conceptql/lexicon/lexicon_no_db.rb +49 -0
  32. data/lib/conceptql/lexicon/lexicon_ohdsi.rb +63 -0
  33. data/lib/conceptql/lexicon/lexicon_strategy.rb +116 -0
  34. data/lib/conceptql/lexicon.rb +111 -0
  35. data/lib/conceptql/nodifier.rb +45 -15
  36. data/lib/conceptql/operators/after.rb +24 -21
  37. data/lib/conceptql/operators/any_overlap.rb +6 -6
  38. data/lib/conceptql/operators/before.rb +24 -16
  39. data/lib/conceptql/operators/binary_operator_operator.rb +52 -13
  40. data/lib/conceptql/operators/casting_operator.rb +24 -17
  41. data/lib/conceptql/operators/co_reported.rb +78 -9
  42. data/lib/conceptql/operators/concurrent_within.rb +29 -17
  43. data/lib/conceptql/operators/contains.rb +9 -9
  44. data/lib/conceptql/operators/count.rb +9 -9
  45. data/lib/conceptql/operators/date_range.rb +40 -18
  46. data/lib/conceptql/operators/death.rb +10 -2
  47. data/lib/conceptql/operators/dedup.rb +31 -0
  48. data/lib/conceptql/operators/during.rb +5 -12
  49. data/lib/conceptql/operators/episode.rb +146 -0
  50. data/lib/conceptql/operators/equal.rb +6 -3
  51. data/lib/conceptql/operators/ethnicity.rb +49 -0
  52. data/lib/conceptql/operators/except.rb +15 -20
  53. data/lib/conceptql/operators/filter.rb +20 -8
  54. data/lib/conceptql/operators/first.rb +14 -3
  55. data/lib/conceptql/operators/from.rb +33 -12
  56. data/lib/conceptql/operators/gender.rb +27 -11
  57. data/lib/conceptql/operators/hospice.rb +19 -0
  58. data/lib/conceptql/operators/hospitalization.rb +19 -0
  59. data/lib/conceptql/operators/information_periods.rb +36 -0
  60. data/lib/conceptql/operators/invalid.rb +4 -5
  61. data/lib/conceptql/operators/last.rb +14 -3
  62. data/lib/conceptql/operators/match.rb +91 -0
  63. data/lib/conceptql/operators/multiple_vocabularies.rb +172 -0
  64. data/lib/conceptql/operators/numeric.rb +52 -29
  65. data/lib/conceptql/operators/numeric_filter.rb +68 -0
  66. data/lib/conceptql/operators/occurrence.rb +133 -48
  67. data/lib/conceptql/operators/one_in_two_out.rb +198 -62
  68. data/lib/conceptql/operators/operator.rb +321 -408
  69. data/lib/conceptql/operators/pass_thru.rb +9 -5
  70. data/lib/conceptql/operators/person.rb +12 -2
  71. data/lib/conceptql/operators/person_filter.rb +5 -3
  72. data/lib/conceptql/operators/place_of_service_filter.rb +11 -15
  73. data/lib/conceptql/operators/provenance.rb +25 -36
  74. data/lib/conceptql/operators/provider_filter.rb +40 -14
  75. data/lib/conceptql/operators/race.rb +48 -7
  76. data/lib/conceptql/operators/read.rb +77 -58
  77. data/lib/conceptql/operators/recall.rb +20 -20
  78. data/lib/conceptql/operators/snf.rb +19 -0
  79. data/lib/conceptql/operators/sum.rb +23 -12
  80. data/lib/conceptql/operators/temporal_operator.rb +80 -54
  81. data/lib/conceptql/operators/time_window.rb +13 -15
  82. data/lib/conceptql/operators/trim_date.rb +71 -0
  83. data/lib/conceptql/operators/trim_date_end.rb +20 -40
  84. data/lib/conceptql/operators/trim_date_start.rb +20 -43
  85. data/lib/conceptql/operators/union.rb +59 -35
  86. data/lib/conceptql/operators/vocabulary.rb +151 -0
  87. data/lib/conceptql/paths.rb +41 -0
  88. data/lib/conceptql/query.rb +168 -46
  89. data/lib/conceptql/query_modifiers/gdm/admission_date_query_modifier.rb +46 -0
  90. data/lib/conceptql/query_modifiers/gdm/drug_query_modifier.rb +54 -0
  91. data/lib/conceptql/query_modifiers/gdm/lab_query_modifier.rb +57 -0
  92. data/lib/conceptql/query_modifiers/gdm/pos_query_modifier.rb +46 -0
  93. data/lib/conceptql/query_modifiers/gdm/provenance_query_modifier.rb +45 -0
  94. data/lib/conceptql/query_modifiers/gdm/provider_query_modifier.rb +53 -0
  95. data/lib/conceptql/query_modifiers/gdm_wide/admission_date_query_modifier.rb +42 -0
  96. data/lib/conceptql/query_modifiers/gdm_wide/drug_query_modifier.rb +52 -0
  97. data/lib/conceptql/query_modifiers/gdm_wide/lab_query_modifier.rb +55 -0
  98. data/lib/conceptql/query_modifiers/gdm_wide/pos_query_modifier.rb +37 -0
  99. data/lib/conceptql/query_modifiers/gdm_wide/provenance_query_modifier.rb +38 -0
  100. data/lib/conceptql/query_modifiers/omopv4_plus/admission_date_query_modifier.rb +45 -0
  101. data/lib/conceptql/query_modifiers/omopv4_plus/drug_query_modifier.rb +80 -0
  102. data/lib/conceptql/query_modifiers/omopv4_plus/pos_query_modifier.rb +47 -0
  103. data/lib/conceptql/query_modifiers/omopv4_plus/provenance_query_modifier.rb +45 -0
  104. data/lib/conceptql/query_modifiers/omopv4_plus/provider_query_modifier.rb +26 -0
  105. data/lib/conceptql/query_modifiers/query_modifier.rb +6 -2
  106. data/lib/conceptql/rdbms/duckdb.rb +21 -0
  107. data/lib/conceptql/rdbms/generic.rb +116 -0
  108. data/lib/conceptql/rdbms/postgres.rb +47 -0
  109. data/lib/conceptql/rdbms/spark.rb +18 -0
  110. data/lib/conceptql/rdbms.rb +22 -0
  111. data/lib/conceptql/scope.rb +353 -41
  112. data/lib/conceptql/utils.rb +70 -0
  113. data/lib/conceptql/utils_cli.rb +17 -0
  114. data/lib/conceptql/version.rb +3 -1
  115. data/lib/conceptql/visitors/metadata_extractor.rb +54 -0
  116. data/lib/conceptql/vocabularies/behaviors/costish.rb +24 -0
  117. data/lib/conceptql/vocabularies/behaviors/gdmish.rb +19 -0
  118. data/lib/conceptql/vocabularies/behaviors/omopish.rb +32 -0
  119. data/lib/conceptql/vocabularies/dynamic_vocabularies.rb +63 -0
  120. data/lib/conceptql/vocabularies/entry.rb +138 -0
  121. data/lib/conceptql/vocabularies/vocabulary_class_factory.rb +85 -0
  122. data/lib/conceptql/window/base.rb +26 -0
  123. data/lib/conceptql/window/date_range.rb +25 -0
  124. data/lib/conceptql/window/table.rb +116 -0
  125. data/lib/conceptql/window.rb +72 -0
  126. data/lib/conceptql.rb +53 -10
  127. data/lib/sequel/extensions/pg_ctas_explain.rb +22 -0
  128. data/lib/sequel/extensions/pg_vacuum_table.rb +23 -0
  129. data/schemas/gdm.yml +882 -0
  130. data/schemas/gdm_wide.yml +757 -0
  131. data/schemas/ohdsi_vocabs.yml +143 -0
  132. data/schemas/omopv4_plus.yml +729 -0
  133. data/schemas/omopv4_plus_more_ignorables.tsv +13 -0
  134. metadata +271 -2065
  135. data/.gitignore +0 -25
  136. data/Gemfile +0 -6
  137. data/Guardfile +0 -56
  138. data/LICENSE.txt +0 -22
  139. data/Rakefile +0 -35
  140. data/conceptql.gemspec +0 -31
  141. data/doc/ConceptQL Specification (alpha).pdf +0 -0
  142. data/doc/converter.rb +0 -33
  143. data/doc/diagram_0.png +0 -0
  144. data/doc/implementation_notes.md +0 -39
  145. data/doc/metadata.md +0 -89
  146. data/doc/spec/02f44ad35d266ddd0a4df1691d26bf4a297b30604fc3f44b0391d6d852d23a9f.png +0 -0
  147. data/doc/spec/0360fc0c2b7a88fd82ffc4d13387b76766649d5d42aa8f9349bbf60a81ac6119.png +0 -0
  148. data/doc/spec/04491942fcbd741982514f9eb12aeecf3d54b5b69a2b50c8331f7700169d5521.png +0 -0
  149. data/doc/spec/05f9b844571ffceeed2def3025fb60c68552817b8b73d3c8a76939dbc08b7c65.png +0 -0
  150. data/doc/spec/067241a3579767a802d4f8e20fd35b60adbe377c9a6512ef135f164a5accfb27.png +0 -0
  151. data/doc/spec/1102fa717b1c2df67af5220bf3ae219afafd79be7bba0c117e301983385ada52.png +0 -0
  152. data/doc/spec/11f57941951bad5a75f9a16f38a31a3c6bf3046a475aac6e398e780892fab4ad.png +0 -0
  153. data/doc/spec/15268bc45993d3f57ccf915877f91e48bdee684f24faa614249915833cac4af9.png +0 -0
  154. data/doc/spec/253845fe6162621af407ebd110296ff4f6d8a3f23ec75dfb4ea8cda30be71262.png +0 -0
  155. data/doc/spec/26fd52b5ac55438dd9f81b4a3f3913f1058c9f225c8a5e129007c1e9413d5881.png +0 -0
  156. data/doc/spec/2b57886a9cba66bb696e4b399c51ad0dc95cd64b952709fafc819a79d573f09e.png +0 -0
  157. data/doc/spec/307a8b5a7edd6e42f8be16523a4c939faf1a0533385c861d7004b6af8addd7d1.png +0 -0
  158. data/doc/spec/328467a6a419c7c05e299b8097e5e000686068ded8dc6d5f2e2de6f51976c315.png +0 -0
  159. data/doc/spec/39d6a8eb71cae51b1d6937c97134e51f04fd47c54535ff0915fe6a8b4f197fb2.png +0 -0
  160. data/doc/spec/3f46dee4d775d1a29d52b68af6552f8ea3abd8303094e749714fc77bd7958155.png +0 -0
  161. data/doc/spec/44ec6743d5d77d15b8a487c2058bf3e455d34adc91c46ea05767f6e0e471a75e.png +0 -0
  162. data/doc/spec/462153be527b28dc2cb5259c0aec62e1f529e8b60dc6e9c23fd1e06e8be933c9.png +0 -0
  163. data/doc/spec/4a3b47ed1c54f96ebdae693d41c36c51884c4546ef799a4108085708fb7b964e.png +0 -0
  164. data/doc/spec/514f263e976d07c0d9e0a86c79bcbdcddc7d444d7b72135294ad78758effd28f.png +0 -0
  165. data/doc/spec/58113a57a37431a402d2547369eba3a481bf1dbbfd82dc384406a5c91f6df01f.png +0 -0
  166. data/doc/spec/5d331d74c460d75814b2d3138a9b7d90b5ddb2dcd85e1f5f260d183745fc3a1e.png +0 -0
  167. data/doc/spec/5d6ff62038b75d6f240d65f35d1520a131c221f47d3801554c8c2be5d528ebb0.png +0 -0
  168. data/doc/spec/62323426e381ec21c967971a67e1f4a6d89dae92154bd937284e00b67f67fdd3.png +0 -0
  169. data/doc/spec/6705af65d728c0d5c50d6c4d46253017a91eb459dbb1f40f92449f05d5562f4a.png +0 -0
  170. data/doc/spec/68fac940a32c7e40caacf8e560c61da552d57633d015ba98f2e98ec040a00c5b.png +0 -0
  171. data/doc/spec/6a34c0ef589c9c976fe41f3e67e799e198499f5b9c3ebfd240fb91f73e893573.png +0 -0
  172. data/doc/spec/6b48534236697d1ccfa1f5403764782f9d228f9eb706789cfa80203882b7b13a.png +0 -0
  173. data/doc/spec/7aa76b4d29874719466c2cbafc9936e9f12e504bf31e1a09d26ca3fffa8ba1a6.png +0 -0
  174. data/doc/spec/7b9db2986ab9ada45cfb9451ef87ff1a2d99c908083334b7ccdceb8a92387fa9.png +0 -0
  175. data/doc/spec/8101d9b89d9ba8070d585432707b43a8acdb4c2a3e9d37c3f7114b5e3ea9e800.png +0 -0
  176. data/doc/spec/886bf85249a704668a55c5161bceaac10be4a41a94b91606f49851dfa017526c.png +0 -0
  177. data/doc/spec/8ed478d8c81a58a202d0c51348fca246df206fc24a0567b163d4e0bdab56ca46.png +0 -0
  178. data/doc/spec/9139440329dcb815df89bc70182c3827868402a74ff64d0253706dcaff723dca.png +0 -0
  179. data/doc/spec/99392f56dfb0e5be3f45a12a7f1ba846d094e430f526dfeaa30b606837cd34c0.png +0 -0
  180. data/doc/spec/a4450e8c0fe0e2fde92fe9bd61952f907b1976c1aa3ba963b809bed079d42b09.png +0 -0
  181. data/doc/spec/a4bc7382a1154ea9856544fd48418f3dd9ce474ca94b8859fc323749c6cc1f55.png +0 -0
  182. data/doc/spec/a79274742cf6fac6f6c9f4a0eb651aeb452f9c43b537c8e6ccaefecd05b7105c.png +0 -0
  183. data/doc/spec/a9b4528726adec2a90f3f00139d8d0492f13c51f03c2f9ed6a5134b1b26b44a9.png +0 -0
  184. data/doc/spec/af5ae3787e80bf0771f18f1a04fe4c5d9291e1e0f963ac408a7bc198d2f1ee28.png +0 -0
  185. data/doc/spec/ba572c4f4dbade65be55f141df16cf7b3e7d09e0aec4e4e5debc4f2075277371.png +0 -0
  186. data/doc/spec/ba90ef705f7be91c53c5eb4a81a439fa0f7c48532214bd3db3cc5c069160543e.png +0 -0
  187. data/doc/spec/c1d0402862221d85aceedc7d76b3f82149b612cbd972f14d0ca9011e1e2c455c.png +0 -0
  188. data/doc/spec/c2157d8a6b73abe4f22ba5042159f32502c74bf6d762be28d2df6831586822c7.png +0 -0
  189. data/doc/spec/c5329a7f4937096a57b2e01efb9d542f84a4e2329a1e9381d08c630583ccad37.png +0 -0
  190. data/doc/spec/c82077b9455d0f9abc2c45ee1a298e38b99c9ce9cd685f65d87b376d7718d7ad.png +0 -0
  191. data/doc/spec/c93dd18894a245a5647f99e1867d3779e4cd34c9c8f8860600ff0c837a5ffa53.png +0 -0
  192. data/doc/spec/cc960a268d51ccf2ebde657d36848f780213834844900018bce3d111843f7b0f.png +0 -0
  193. data/doc/spec/d39452b58257c95a7cba07afed4877417b0c227f3690e2bff22c9eca89eac845.png +0 -0
  194. data/doc/spec/d64993258ffbef9406d9ab9136de7af530626b3a69e9eeb75835e11f11dabf62.png +0 -0
  195. data/doc/spec/da450cdd0c94a1301bd98560339a45caa8041e09974352a56ecfb144e9a5e4d4.png +0 -0
  196. data/doc/spec/dbc66b3ae6bd7123d77dd04b64f8a24498d048725a55c5340b15f5ae0a1ff307.png +0 -0
  197. data/doc/spec/de589af36fa854e006a1563c93e644e2210f2a5616babb779f7f38aadb6c1ed7.png +0 -0
  198. data/doc/spec/defbd0b853d895802663f507761ad297d82e167f516c6082686a2a19b76012c5.png +0 -0
  199. data/doc/spec/e1cb0863b21e14256d61a54200316791f6547c78ba2f0156c110f4500f9bbd49.png +0 -0
  200. data/doc/spec/e8630103287f7c9d28eff40b3b1826e24846e776b877f7b8554257acbe621e1c.png +0 -0
  201. data/doc/spec/e9b384fa7dec5f1a06479c4b289e06b1e60e4f23f7630aff6d03c52595f500f8.png +0 -0
  202. data/doc/spec/ea935ac31f3b57ff373646780a1fba34a38c9e086dc771eb7fc16c65a7e20cfc.png +0 -0
  203. data/doc/spec/eb8f5511f7d88bd0f8ba73420fc10f7c78405db7f4373d778a827058707f888e.png +0 -0
  204. data/doc/spec/ebacbd092e3d1a3c7b745a381e51e8ff9d63a21db23a16940193e18e57bc866f.png +0 -0
  205. data/doc/spec/ed039f82867241393b1a6a7153d3690461103934c72c1f3eaa3d99a12bb40885.png +0 -0
  206. data/doc/spec/ee283d6a4b69cf10da2df703be3a16830be9cd8cd4f68c5f7afdf558ea28fa76.png +0 -0
  207. data/doc/spec/f0c734b099841a754ae0366afb00e992ad4814479b65e4a7de23c6e3dd85c09a.png +0 -0
  208. data/doc/spec/f6b4fc31703cfb6327bbbd4614af8bb72da6d39fa3d53ada63a70157f2fad80e.png +0 -0
  209. data/doc/spec/f766f2e3aa13420e3ba0f823ac7956b311ed7c6c20be26b72324fadd87f36712.png +0 -0
  210. data/doc/spec/ff7d5b5573d09bd7c4cdd3aeda124d18bf82ec46673a62881b399a75d69f3f53.png +0 -0
  211. data/doc/spec.md +0 -2258
  212. data/doc/spec.md.cql +0 -1930
  213. data/lib/conceptql/annotate_grapher.rb +0 -127
  214. data/lib/conceptql/fake_annotater.rb +0 -129
  215. data/lib/conceptql/knitter.rb +0 -221
  216. data/lib/conceptql/logger.rb +0 -10
  217. data/lib/conceptql/operators/complement.rb +0 -43
  218. data/lib/conceptql/operators/condition_occurrence_source_vocabulary_operator.rb +0 -34
  219. data/lib/conceptql/operators/condition_occurrence_source_vocabulary_operator_union.rb +0 -28
  220. data/lib/conceptql/operators/condition_type.rb +0 -79
  221. data/lib/conceptql/operators/cpt.rb +0 -28
  222. data/lib/conceptql/operators/cpt_or_hcpcs.rb +0 -27
  223. data/lib/conceptql/operators/drg.rb +0 -42
  224. data/lib/conceptql/operators/drug_type_concept.rb +0 -30
  225. data/lib/conceptql/operators/from_seer_visits.rb +0 -29
  226. data/lib/conceptql/operators/hcpcs.rb +0 -28
  227. data/lib/conceptql/operators/icd10.rb +0 -19
  228. data/lib/conceptql/operators/icd10_pcs.rb +0 -28
  229. data/lib/conceptql/operators/icd9.rb +0 -19
  230. data/lib/conceptql/operators/icd9_procedure.rb +0 -28
  231. data/lib/conceptql/operators/intersect.rb +0 -39
  232. data/lib/conceptql/operators/loinc.rb +0 -28
  233. data/lib/conceptql/operators/medcode.rb +0 -17
  234. data/lib/conceptql/operators/medcode_procedure.rb +0 -28
  235. data/lib/conceptql/operators/ndc.rb +0 -32
  236. data/lib/conceptql/operators/observation_by_enttype.rb +0 -32
  237. data/lib/conceptql/operators/observation_period.rb +0 -32
  238. data/lib/conceptql/operators/overlapped_by.rb +0 -26
  239. data/lib/conceptql/operators/overlaps.rb +0 -21
  240. data/lib/conceptql/operators/place_of_service_code.rb +0 -31
  241. data/lib/conceptql/operators/procedure_occurrence.rb +0 -27
  242. data/lib/conceptql/operators/prodcode.rb +0 -32
  243. data/lib/conceptql/operators/revenue_code.rb +0 -40
  244. data/lib/conceptql/operators/rxnorm.rb +0 -28
  245. data/lib/conceptql/operators/snomed.rb +0 -25
  246. data/lib/conceptql/operators/source_vocabulary_operator.rb +0 -88
  247. data/lib/conceptql/operators/standard_vocabulary_operator.rb +0 -66
  248. data/lib/conceptql/operators/started_by.rb +0 -23
  249. data/lib/conceptql/operators/to_seer_visits.rb +0 -29
  250. data/lib/conceptql/operators/visit_occurrence.rb +0 -32
  251. data/lib/conceptql/operators/vocabulary_operator.rb +0 -45
  252. data/lib/conceptql/query_modifiers/drug_query_modifier.rb +0 -45
  253. data/lib/conceptql/query_modifiers/pos_query_modifier.rb +0 -31
  254. data/lib/conceptql/sql_formatter.rb +0 -22
  255. data/test/all.rb +0 -3
  256. data/test/all_operations_test.rb +0 -45
  257. data/test/code_list_test.rb +0 -23
  258. data/test/data/omopv4/care_site.csv +0 -0
  259. data/test/data/omopv4/cohort.csv +0 -0
  260. data/test/data/omopv4/condition_era.csv +0 -0
  261. data/test/data/omopv4/condition_occurrence.csv +0 -34044
  262. data/test/data/omopv4/death.csv +0 -1
  263. data/test/data/omopv4/drug_cost.csv +0 -0
  264. data/test/data/omopv4/drug_era.csv +0 -0
  265. data/test/data/omopv4/drug_exposure.csv +0 -2
  266. data/test/data/omopv4/location.csv +0 -0
  267. data/test/data/omopv4/observation.csv +0 -2
  268. data/test/data/omopv4/observation_period.csv +0 -1
  269. data/test/data/omopv4/organization.csv +0 -0
  270. data/test/data/omopv4/payer_plan_period.csv +0 -0
  271. data/test/data/omopv4/person.csv +0 -250
  272. data/test/data/omopv4/procedure_cost.csv +0 -0
  273. data/test/data/omopv4/procedure_occurrence.csv +0 -35099
  274. data/test/data/omopv4/provider.csv +0 -0
  275. data/test/data/omopv4/visit_occurrence.csv +0 -14931
  276. data/test/data/omopv4_plus/care_site.csv +0 -0
  277. data/test/data/omopv4_plus/cohort.csv +0 -0
  278. data/test/data/omopv4_plus/concept.csv +0 -352
  279. data/test/data/omopv4_plus/condition_era.csv +0 -0
  280. data/test/data/omopv4_plus/condition_occurrence.csv +0 -46673
  281. data/test/data/omopv4_plus/death.csv +0 -9
  282. data/test/data/omopv4_plus/drug_cost.csv +0 -13921
  283. data/test/data/omopv4_plus/drug_era.csv +0 -0
  284. data/test/data/omopv4_plus/drug_exposure.csv +0 -13921
  285. data/test/data/omopv4_plus/headers/care_site.csv +0 -1
  286. data/test/data/omopv4_plus/headers/cohort.csv +0 -1
  287. data/test/data/omopv4_plus/headers/concept.csv +0 -1
  288. data/test/data/omopv4_plus/headers/condition_era.csv +0 -1
  289. data/test/data/omopv4_plus/headers/condition_occurrence.csv +0 -1
  290. data/test/data/omopv4_plus/headers/death.csv +0 -1
  291. data/test/data/omopv4_plus/headers/drug_cost.csv +0 -1
  292. data/test/data/omopv4_plus/headers/drug_era.csv +0 -1
  293. data/test/data/omopv4_plus/headers/drug_exposure.csv +0 -1
  294. data/test/data/omopv4_plus/headers/location.csv +0 -1
  295. data/test/data/omopv4_plus/headers/observation.csv +0 -1
  296. data/test/data/omopv4_plus/headers/observation_period.csv +0 -1
  297. data/test/data/omopv4_plus/headers/organization.csv +0 -1
  298. data/test/data/omopv4_plus/headers/payer_plan_period.csv +0 -1
  299. data/test/data/omopv4_plus/headers/person.csv +0 -1
  300. data/test/data/omopv4_plus/headers/procedure_cost.csv +0 -1
  301. data/test/data/omopv4_plus/headers/procedure_occurrence.csv +0 -1
  302. data/test/data/omopv4_plus/headers/provider.csv +0 -1
  303. data/test/data/omopv4_plus/headers/source_to_concept_map.csv +0 -1
  304. data/test/data/omopv4_plus/headers/visit_occurrence.csv +0 -1
  305. data/test/data/omopv4_plus/headers/vocabulary.csv +0 -1
  306. data/test/data/omopv4_plus/location.csv +0 -0
  307. data/test/data/omopv4_plus/observation.csv +0 -0
  308. data/test/data/omopv4_plus/observation_period.csv +0 -147
  309. data/test/data/omopv4_plus/organization.csv +0 -736
  310. data/test/data/omopv4_plus/payer_plan_period.csv +0 -808
  311. data/test/data/omopv4_plus/person.csv +0 -250
  312. data/test/data/omopv4_plus/procedure_cost.csv +0 -20123
  313. data/test/data/omopv4_plus/procedure_occurrence.csv +0 -27273
  314. data/test/data/omopv4_plus/provider.csv +0 -10193
  315. data/test/data/omopv4_plus/source_to_concept_map.csv +0 -285
  316. data/test/data/omopv4_plus/visit_occurrence.csv +0 -45125
  317. data/test/data/omopv4_plus/vocabulary.csv +0 -60
  318. data/test/db.rb +0 -15
  319. data/test/db_setup.rb +0 -408
  320. data/test/db_teardown.rb +0 -33
  321. data/test/fake_annotater_test.rb +0 -31
  322. data/test/helper.rb +0 -129
  323. data/test/knitter/conceptql.md.cql +0 -39
  324. data/test/knitter/conceptql.md.expect +0 -43
  325. data/test/knitter/empty.md.cql +0 -0
  326. data/test/knitter/except.md.cql +0 -13
  327. data/test/knitter/except.md.expect +0 -14
  328. data/test/knitter/fake.md.cql +0 -10
  329. data/test/knitter/fake.md.expect +0 -13
  330. data/test/knitter/many.md.cql +0 -7
  331. data/test/knitter/many.md.expect +0 -14
  332. data/test/knitter/no_conceptql.md.cql +0 -36
  333. data/test/knitter/title.md.cql +0 -12
  334. data/test/knitter/title.md.expect +0 -15
  335. data/test/knitter/union.md.cql +0 -11
  336. data/test/knitter/union.md.expect +0 -14
  337. data/test/knitter_test.rb +0 -69
  338. data/test/query_test.rb +0 -36
  339. data/test/results/omopv4/after/anno_1 +0 -25
  340. data/test/results/omopv4/after/anno_2 +0 -48
  341. data/test/results/omopv4/after/anno_3 +0 -34
  342. data/test/results/omopv4/after/anno_4 +0 -60
  343. data/test/results/omopv4/after/anno_5 +0 -68
  344. data/test/results/omopv4/after/anno_6 +0 -60
  345. data/test/results/omopv4/after/crit_at_least +0 -7
  346. data/test/results/omopv4/after/crit_basic +0 -32
  347. data/test/results/omopv4/after/crit_occurrences +0 -12
  348. data/test/results/omopv4/after/crit_within +0 -6
  349. data/test/results/omopv4/any_overlap/crit_basic1 +0 -15
  350. data/test/results/omopv4/any_overlap/crit_basic2 +0 -15
  351. data/test/results/omopv4/any_overlap/crit_occurrences1 +0 -2
  352. data/test/results/omopv4/any_overlap/crit_occurrences2 +0 -15
  353. data/test/results/omopv4/any_overlap/crit_within +0 -8
  354. data/test/results/omopv4/before/crit_at_least +0 -6
  355. data/test/results/omopv4/before/crit_basic1 +0 -48
  356. data/test/results/omopv4/before/crit_basic2 +0 -7
  357. data/test/results/omopv4/before/crit_occurrences +0 -13
  358. data/test/results/omopv4/before/crit_within +0 -18
  359. data/test/results/omopv4/co_reported/anno_1 +0 -43
  360. data/test/results/omopv4/co_reported/anno_2 +0 -66
  361. data/test/results/omopv4/complement/anno_duplicate_params +0 -52
  362. data/test/results/omopv4/complement/anno_invalid_params +0 -37
  363. data/test/results/omopv4/complement/anno_no_params +0 -18
  364. data/test/results/omopv4/complement/count_3way_intersect +0 -4
  365. data/test/results/omopv4/complement/count_3way_union +0 -4
  366. data/test/results/omopv4/complement/count_intersect +0 -3
  367. data/test/results/omopv4/complement/count_union +0 -3
  368. data/test/results/omopv4/complement/count_union_and_intersect +0 -4
  369. data/test/results/omopv4/complement/crit_3way_intersect +0 -1
  370. data/test/results/omopv4/complement/crit_3way_union +0 -1
  371. data/test/results/omopv4/complement/crit_basic1 +0 -33998
  372. data/test/results/omopv4/complement/crit_icd9_selector +0 -54
  373. data/test/results/omopv4/complement/crit_intersect +0 -1
  374. data/test/results/omopv4/complement/crit_union +0 -1
  375. data/test/results/omopv4/complement/crit_union_and_intersect +0 -1
  376. data/test/results/omopv4/complex/anno_1 +0 -85
  377. data/test/results/omopv4/complex/crit_1 +0 -2
  378. data/test/results/omopv4/complex/crit_2 +0 -2
  379. data/test/results/omopv4/complex/crit_3 +0 -2
  380. data/test/results/omopv4/complex/crit_4 +0 -5
  381. data/test/results/omopv4/complex/crit_5 +0 -6
  382. data/test/results/omopv4/complex/crit_6 +0 -28
  383. data/test/results/omopv4/complex/crit_7 +0 -46
  384. data/test/results/omopv4/complex/crit_out_of_order_ctes +0 -7
  385. data/test/results/omopv4/complex/scanno_1 +0 -3
  386. data/test/results/omopv4/concurrent_within/crit_icd9 +0 -54
  387. data/test/results/omopv4/concurrent_within/crit_icd9_and_place_of_service +0 -23
  388. data/test/results/omopv4/concurrent_within/crit_negative_start +0 -5
  389. data/test/results/omopv4/condition_type/anno_icd9 +0 -39
  390. data/test/results/omopv4/condition_type/count_condition_era +0 -2
  391. data/test/results/omopv4/condition_type/count_condition_era_30_day_window +0 -2
  392. data/test/results/omopv4/condition_type/count_ehr_problem_list +0 -2
  393. data/test/results/omopv4/condition_type/count_era_0 +0 -2
  394. data/test/results/omopv4/condition_type/count_inpatient +0 -3
  395. data/test/results/omopv4/condition_type/count_inpatient_detail +0 -2
  396. data/test/results/omopv4/condition_type/count_inpatient_header +0 -3
  397. data/test/results/omopv4/condition_type/count_inpatient_header_2 +0 -3
  398. data/test/results/omopv4/condition_type/count_inpatient_header_3 +0 -3
  399. data/test/results/omopv4/condition_type/count_inpatient_header_4 +0 -3
  400. data/test/results/omopv4/condition_type/count_inpatient_header_5 +0 -3
  401. data/test/results/omopv4/condition_type/count_inpatient_outpatient_detail +0 -3
  402. data/test/results/omopv4/condition_type/count_inpatient_primary +0 -2
  403. data/test/results/omopv4/condition_type/count_inpatient_primary_or_first +0 -3
  404. data/test/results/omopv4/condition_type/count_outpatient +0 -3
  405. data/test/results/omopv4/condition_type/count_outpatient_detail +0 -3
  406. data/test/results/omopv4/condition_type/count_outpatient_header +0 -2
  407. data/test/results/omopv4/condition_type/count_outpatient_primary +0 -3
  408. data/test/results/omopv4/condition_type/count_primary +0 -3
  409. data/test/results/omopv4/condition_type/crit_condition_era +0 -1
  410. data/test/results/omopv4/condition_type/crit_condition_era_30_day_window +0 -1
  411. data/test/results/omopv4/condition_type/crit_ehr_problem_list +0 -1
  412. data/test/results/omopv4/condition_type/crit_era_0 +0 -1
  413. data/test/results/omopv4/condition_type/crit_inpatient +0 -1
  414. data/test/results/omopv4/condition_type/crit_inpatient_detail +0 -1
  415. data/test/results/omopv4/condition_type/crit_inpatient_header +0 -1
  416. data/test/results/omopv4/condition_type/crit_inpatient_header_2 +0 -1
  417. data/test/results/omopv4/condition_type/crit_inpatient_header_3 +0 -1
  418. data/test/results/omopv4/condition_type/crit_inpatient_header_4 +0 -1
  419. data/test/results/omopv4/condition_type/crit_inpatient_header_5 +0 -1
  420. data/test/results/omopv4/condition_type/crit_inpatient_primary +0 -1
  421. data/test/results/omopv4/condition_type/crit_inpatient_primary_or_first +0 -1
  422. data/test/results/omopv4/condition_type/crit_outpatient +0 -1
  423. data/test/results/omopv4/condition_type/crit_outpatient_detail +0 -1
  424. data/test/results/omopv4/condition_type/crit_outpatient_header +0 -1
  425. data/test/results/omopv4/condition_type/crit_outpatient_primary +0 -1
  426. data/test/results/omopv4/condition_type/crit_primary +0 -1
  427. data/test/results/omopv4/contains/crit_1 +0 -5
  428. data/test/results/omopv4/contains/crit_2 +0 -2
  429. data/test/results/omopv4/contains/crit_3 +0 -2
  430. data/test/results/omopv4/count/anno_multiple_upstreams +0 -52
  431. data/test/results/omopv4/count/anno_no_upstream1 +0 -18
  432. data/test/results/omopv4/count/anno_no_upstream2 +0 -25
  433. data/test/results/omopv4/count/crit_icd9_ndc +0 -8
  434. data/test/results/omopv4/count/crit_ndc +0 -5
  435. data/test/results/omopv4/count/crit_person +0 -254
  436. data/test/results/omopv4/cpt/anno_icd9_upstream +0 -40
  437. data/test/results/omopv4/cpt/anno_invalid_code +0 -22
  438. data/test/results/omopv4/cpt/count_1 +0 -3
  439. data/test/results/omopv4/cpt/crit_1 +0 -174
  440. data/test/results/omopv4/cpt/crit_2 +0 -1
  441. data/test/results/omopv4/cpt/scanno_1 +0 -17
  442. data/test/results/omopv4/cpt_or_hcpcs/anno_bad_format +0 -25
  443. data/test/results/omopv4/cpt_or_hcpcs/count_1 +0 -3
  444. data/test/results/omopv4/cpt_or_hcpcs/crit_1 +0 -179
  445. data/test/results/omopv4/cpt_or_hcpcs/crit_2 +0 -1
  446. data/test/results/omopv4/date_range/anno_1 +0 -15
  447. data/test/results/omopv4/date_range/anno_extra_argument +0 -24
  448. data/test/results/omopv4/date_range/anno_invalid_argument +0 -25
  449. data/test/results/omopv4/date_range/anno_missing_argument1 +0 -20
  450. data/test/results/omopv4/date_range/anno_missing_argument2 +0 -20
  451. data/test/results/omopv4/date_range/anno_no_upstreams +0 -38
  452. data/test/results/omopv4/date_range/count_1 +0 -3
  453. data/test/results/omopv4/date_range/count_2 +0 -3
  454. data/test/results/omopv4/date_range/crit_1 +0 -1
  455. data/test/results/omopv4/date_range/crit_2 +0 -1
  456. data/test/results/omopv4/death/anno_multiple_upstreams +0 -50
  457. data/test/results/omopv4/death/anno_no_upstreams +0 -22
  458. data/test/results/omopv4/death/crit_basic +0 -5
  459. data/test/results/omopv4/death/crit_person +0 -5
  460. data/test/results/omopv4/drug_type_concept/anno_has_upstreams +0 -37
  461. data/test/results/omopv4/drug_type_concept/anno_no_arguments +0 -18
  462. data/test/results/omopv4/drug_type_concept/crit_basic1 +0 -5
  463. data/test/results/omopv4/drug_type_concept/crit_basic2 +0 -2
  464. data/test/results/omopv4/during/crit_1 +0 -15
  465. data/test/results/omopv4/during/crit_2 +0 -2
  466. data/test/results/omopv4/equal/crit_1 +0 -5
  467. data/test/results/omopv4/equal/crit_2 +0 -5
  468. data/test/results/omopv4/except/anno_1 +0 -42
  469. data/test/results/omopv4/except/anno_2 +0 -43
  470. data/test/results/omopv4/except/count_complex +0 -5
  471. data/test/results/omopv4/except/crit_412_cpt +0 -54
  472. data/test/results/omopv4/except/crit_412_inpatient +0 -46
  473. data/test/results/omopv4/except/crit_complex +0 -1
  474. data/test/results/omopv4/filter/crit_1 +0 -54
  475. data/test/results/omopv4/first/anno_argument +0 -25
  476. data/test/results/omopv4/first/anno_no_upstream +0 -18
  477. data/test/results/omopv4/first/crit_cpt +0 -207
  478. data/test/results/omopv4/first/crit_icd9 +0 -42
  479. data/test/results/omopv4/first/crit_union +0 -45
  480. data/test/results/omopv4/from/anno_has_upstreams +0 -39
  481. data/test/results/omopv4/from/anno_multiple_arguments +0 -24
  482. data/test/results/omopv4/from/count_condition_occurrence +0 -3
  483. data/test/results/omopv4/from/count_observation_period +0 -3
  484. data/test/results/omopv4/from/count_person +0 -3
  485. data/test/results/omopv4/from_seer_visits/anno_multiple_upstreams +0 -78
  486. data/test/results/omopv4/from_seer_visits/anno_no_upstream +0 -18
  487. data/test/results/omopv4/from_seer_visits/crit_1 +0 -6
  488. data/test/results/omopv4/from_seer_visits/crit_2 +0 -5
  489. data/test/results/omopv4/from_seer_visits/crit_3 +0 -5
  490. data/test/results/omopv4/from_seer_visits/crit_4 +0 -6
  491. data/test/results/omopv4/gender/anno_has_upstreams +0 -39
  492. data/test/results/omopv4/gender/crit_male +0 -130
  493. data/test/results/omopv4/hcpcs/anno_bad_format +0 -24
  494. data/test/results/omopv4/hcpcs/crit_A0382 +0 -9
  495. data/test/results/omopv4/icd10/anno_bad_format +0 -22
  496. data/test/results/omopv4/icd10/anno_has_upstreams +0 -40
  497. data/test/results/omopv4/icd10/crit_1 +0 -5
  498. data/test/results/omopv4/icd10pcs/anno_bad_format +0 -28
  499. data/test/results/omopv4/icd10pcs/anno_has_upstreams +0 -40
  500. data/test/results/omopv4/icd10pcs/crit_1 +0 -2
  501. data/test/results/omopv4/icd9/anno_empty_label +0 -15
  502. data/test/results/omopv4/icd9/anno_invalid_code +0 -21
  503. data/test/results/omopv4/icd9/crit_1 +0 -54
  504. data/test/results/omopv4/icd9_procedure/crit_1 +0 -5
  505. data/test/results/omopv4/intersect/anno_412_inpatient +0 -42
  506. data/test/results/omopv4/intersect/anno_has_arguments +0 -25
  507. data/test/results/omopv4/intersect/anno_no_upstream +0 -18
  508. data/test/results/omopv4/intersect/crit_412_inpatient +0 -12
  509. data/test/results/omopv4/intersect/crit_412_male +0 -182
  510. data/test/results/omopv4/intersect/crit_complex +0 -118
  511. data/test/results/omopv4/invalid/anno_bad_op +0 -55
  512. data/test/results/omopv4/invalid/scanno_1 +0 -23
  513. data/test/results/omopv4/last/crit_icd9 +0 -42
  514. data/test/results/omopv4/loinc/crit_basic +0 -5
  515. data/test/results/omopv4/ndc/crit_basic +0 -5
  516. data/test/results/omopv4/numeric/anno_multiple_upstreams +0 -59
  517. data/test/results/omopv4/numeric/num_values_1 +0 -254
  518. data/test/results/omopv4/numeric/num_values_2 +0 -5
  519. data/test/results/omopv4/numeric/num_values_3 +0 -5
  520. data/test/results/omopv4/observation_period/anno_has_arguments +0 -36
  521. data/test/results/omopv4/observation_period/anno_multiple_upstreams +0 -51
  522. data/test/results/omopv4/observation_period/count_all_periods +0 -3
  523. data/test/results/omopv4/observation_period/crit_female +0 -2
  524. data/test/results/omopv4/observation_period/crit_icd9 +0 -5
  525. data/test/results/omopv4/observation_period/crit_male +0 -5
  526. data/test/results/omopv4/occurrence/anno_no_upstream +0 -22
  527. data/test/results/omopv4/occurrence/cc_412_410 +0 -1
  528. data/test/results/omopv4/occurrence/count_412_410 +0 -3
  529. data/test/results/omopv4/occurrence/crit_1 +0 -16
  530. data/test/results/omopv4/occurrence/crit_2 +0 -2
  531. data/test/results/omopv4/occurrence/crit_3 +0 -42
  532. data/test/results/omopv4/one_in_two_out/anno_has_arguments +0 -27
  533. data/test/results/omopv4/one_in_two_out/anno_multiple_upstreams +0 -54
  534. data/test/results/omopv4/one_in_two_out/anno_no_upstream +0 -20
  535. data/test/results/omopv4/one_in_two_out/count_1 +0 -3
  536. data/test/results/omopv4/one_in_two_out/crit_hcpcs +0 -7
  537. data/test/results/omopv4/one_in_two_out/crit_icd9 +0 -21
  538. data/test/results/omopv4/overlapped_by/crit_1 +0 -5
  539. data/test/results/omopv4/overlapped_by/crit_2 +0 -2
  540. data/test/results/omopv4/overlapped_by/crit_3 +0 -5
  541. data/test/results/omopv4/overlapped_by/crit_4 +0 -2
  542. data/test/results/omopv4/overlaps/crit_1 +0 -5
  543. data/test/results/omopv4/overlaps/crit_2 +0 -2
  544. data/test/results/omopv4/overlaps/crit_3 +0 -5
  545. data/test/results/omopv4/overlaps/crit_4 +0 -2
  546. data/test/results/omopv4/person/anno_has_arguments +0 -22
  547. data/test/results/omopv4/person/anno_multiple_upstreams +0 -52
  548. data/test/results/omopv4/person/count_2 +0 -3
  549. data/test/results/omopv4/person/crit_1 +0 -42
  550. data/test/results/omopv4/person/crit_2 +0 -1
  551. data/test/results/omopv4/person_filter/count_1 +0 -4
  552. data/test/results/omopv4/person_filter/crit_1 +0 -54
  553. data/test/results/omopv4/person_filter/crit_2 +0 -5
  554. data/test/results/omopv4/person_filter/crit_3 +0 -32
  555. data/test/results/omopv4/person_filter/crit_4 +0 -52
  556. data/test/results/omopv4/person_filter/crit_5 +0 -1
  557. data/test/results/omopv4/place_of_service_code/anno_has_upstreams +0 -37
  558. data/test/results/omopv4/place_of_service_code/anno_no_arguments +0 -18
  559. data/test/results/omopv4/place_of_service_code/crit_basic +0 -174
  560. data/test/results/omopv4/place_of_service_filter/anno_1 +0 -29
  561. data/test/results/omopv4/procedure_occurrence/anno_has_arguments +0 -37
  562. data/test/results/omopv4/procedure_occurrence/anno_multiple_upstreams +0 -51
  563. data/test/results/omopv4/procedure_occurrence/count_gender +0 -3
  564. data/test/results/omopv4/procedure_occurrence/count_icd9 +0 -3
  565. data/test/results/omopv4/procedure_occurrence/count_started_by +0 -3
  566. data/test/results/omopv4/procedure_occurrence/crit_gender +0 -1
  567. data/test/results/omopv4/procedure_occurrence/crit_icd9 +0 -1
  568. data/test/results/omopv4/procedure_occurrence/crit_started_by +0 -1
  569. data/test/results/omopv4/provenance/anno_1 +0 -29
  570. data/test/results/omopv4/provider_filter/anno_1 +0 -29
  571. data/test/results/omopv4/race/anno_1 +0 -37
  572. data/test/results/omopv4/race/anno_2 +0 -18
  573. data/test/results/omopv4/race/crit_1 +0 -28
  574. data/test/results/omopv4/read/anno_1 +0 -21
  575. data/test/results/omopv4/read/crit_1 +0 -2
  576. data/test/results/omopv4/recall/anno_1 +0 -54
  577. data/test/results/omopv4/recall/anno_2 +0 -66
  578. data/test/results/omopv4/recall/anno_3 +0 -20
  579. data/test/results/omopv4/recall/anno_4 +0 -18
  580. data/test/results/omopv4/recall/anno_5 +0 -24
  581. data/test/results/omopv4/recall/anno_6 +0 -270
  582. data/test/results/omopv4/recall/crit_1 +0 -21
  583. data/test/results/omopv4/recall/crit_2 +0 -54
  584. data/test/results/omopv4/recall/crit_3 +0 -2
  585. data/test/results/omopv4/recall/crit_cte_1 +0 -42
  586. data/test/results/omopv4/recall/crit_cte_2 +0 -42
  587. data/test/results/omopv4/recall/crit_nested_perm_0 +0 -54
  588. data/test/results/omopv4/revenue_code/crit_1 +0 -2
  589. data/test/results/omopv4/revenue_code/crit_basic +0 -2
  590. data/test/results/omopv4/revenue_code/domains_1 +0 -3
  591. data/test/results/omopv4/revenue_code/domains_drg100 +0 -3
  592. data/test/results/omopv4/rxnorm/crit_1 +0 -5
  593. data/test/results/omopv4/snomed/crit_1 +0 -84
  594. data/test/results/omopv4/started_by/crit_1 +0 -5
  595. data/test/results/omopv4/started_by/crit_2 +0 -2
  596. data/test/results/omopv4/started_by/crit_3 +0 -2
  597. data/test/results/omopv4/sum/anno_1 +0 -18
  598. data/test/results/omopv4/sum/anno_2 +0 -36
  599. data/test/results/omopv4/sum/num_1 +0 -5
  600. data/test/results/omopv4/sum/num_2 +0 -8
  601. data/test/results/omopv4/sum/num_3 +0 -254
  602. data/test/results/omopv4/time_window/anno_1 +0 -20
  603. data/test/results/omopv4/time_window/anno_2 +0 -40
  604. data/test/results/omopv4/time_window/anno_3 +0 -36
  605. data/test/results/omopv4/time_window/anno_4 +0 -39
  606. data/test/results/omopv4/time_window/anno_5 +0 -57
  607. data/test/results/omopv4/time_window/crit_1 +0 -54
  608. data/test/results/omopv4/time_window/crit_2 +0 -174
  609. data/test/results/omopv4/time_window/crit_3 +0 -54
  610. data/test/results/omopv4/time_window/crit_4 +0 -174
  611. data/test/results/omopv4/trim_date_end/crit_1 +0 -5
  612. data/test/results/omopv4/trim_date_end/crit_2 +0 -2
  613. data/test/results/omopv4/trim_date_end/crit_3 +0 -6
  614. data/test/results/omopv4/trim_date_end/crit_at_least +0 -5
  615. data/test/results/omopv4/trim_date_end/crit_occurrences_1 +0 -2
  616. data/test/results/omopv4/trim_date_end/crit_occurrences_2 +0 -6
  617. data/test/results/omopv4/trim_date_end/crit_within +0 -5
  618. data/test/results/omopv4/trim_date_start/crit_1 +0 -5
  619. data/test/results/omopv4/trim_date_start/crit_2 +0 -2
  620. data/test/results/omopv4/trim_date_start/crit_3 +0 -6
  621. data/test/results/omopv4/trim_date_start/crit_at_least +0 -5
  622. data/test/results/omopv4/trim_date_start/crit_occurrences_1 +0 -2
  623. data/test/results/omopv4/trim_date_start/crit_occurrences_2 +0 -6
  624. data/test/results/omopv4/trim_date_start/crit_within +0 -5
  625. data/test/results/omopv4/union/anno_1 +0 -43
  626. data/test/results/omopv4/union/anno_2 +0 -74
  627. data/test/results/omopv4/union/anno_3 +0 -18
  628. data/test/results/omopv4/union/anno_4 +0 -25
  629. data/test/results/omopv4/union/anno_5 +0 -33
  630. data/test/results/omopv4/union/anno_6 +0 -46
  631. data/test/results/omopv4/union/cc_1 +0 -1
  632. data/test/results/omopv4/union/cc_2 +0 -1
  633. data/test/results/omopv4/union/cc_3 +0 -1
  634. data/test/results/omopv4/union/cc_4 +0 -1
  635. data/test/results/omopv4/union/cc_5 +0 -1
  636. data/test/results/omopv4/union/count_1 +0 -3
  637. data/test/results/omopv4/union/count_2 +0 -3
  638. data/test/results/omopv4/union/count_3 +0 -3
  639. data/test/results/omopv4/union/count_4 +0 -3
  640. data/test/results/omopv4/union/count_5 +0 -4
  641. data/test/results/omopv4/union/scanno_1 +0 -22
  642. data/test/results/omopv4/union/scanno_2 +0 -36
  643. data/test/results/omopv4/visit_occurrence/anno_1 +0 -52
  644. data/test/results/omopv4/visit_occurrence/anno_2 +0 -37
  645. data/test/results/omopv4/visit_occurrence/crit_1 +0 -54
  646. data/test/results/omopv4/visit_occurrence/crit_2 +0 -7566
  647. data/test/results/omopv4/visit_occurrence/crit_3 +0 -14935
  648. data/test/results/omopv4_plus/after/anno_1 +0 -25
  649. data/test/results/omopv4_plus/after/anno_2 +0 -48
  650. data/test/results/omopv4_plus/after/anno_3 +0 -34
  651. data/test/results/omopv4_plus/after/anno_4 +0 -60
  652. data/test/results/omopv4_plus/after/anno_5 +0 -68
  653. data/test/results/omopv4_plus/after/anno_6 +0 -60
  654. data/test/results/omopv4_plus/after/crit_at_least +0 -7
  655. data/test/results/omopv4_plus/after/crit_basic +0 -32
  656. data/test/results/omopv4_plus/after/crit_occurrences +0 -12
  657. data/test/results/omopv4_plus/after/crit_within +0 -5
  658. data/test/results/omopv4_plus/any_overlap/crit_basic1 +0 -14
  659. data/test/results/omopv4_plus/any_overlap/crit_basic2 +0 -14
  660. data/test/results/omopv4_plus/any_overlap/crit_occurrences1 +0 -2
  661. data/test/results/omopv4_plus/any_overlap/crit_occurrences2 +0 -14
  662. data/test/results/omopv4_plus/any_overlap/crit_within +0 -8
  663. data/test/results/omopv4_plus/before/crit_at_least +0 -6
  664. data/test/results/omopv4_plus/before/crit_basic1 +0 -48
  665. data/test/results/omopv4_plus/before/crit_basic2 +0 -8
  666. data/test/results/omopv4_plus/before/crit_occurrences +0 -13
  667. data/test/results/omopv4_plus/before/crit_within +0 -17
  668. data/test/results/omopv4_plus/co_reported/anno_1 +0 -43
  669. data/test/results/omopv4_plus/co_reported/anno_2 +0 -66
  670. data/test/results/omopv4_plus/co_reported/anno_3 +0 -47
  671. data/test/results/omopv4_plus/complement/anno_duplicate_params +0 -52
  672. data/test/results/omopv4_plus/complement/anno_invalid_params +0 -37
  673. data/test/results/omopv4_plus/complement/anno_no_params +0 -18
  674. data/test/results/omopv4_plus/complement/count_3way_intersect +0 -4
  675. data/test/results/omopv4_plus/complement/count_3way_union +0 -4
  676. data/test/results/omopv4_plus/complement/count_intersect +0 -3
  677. data/test/results/omopv4_plus/complement/count_union +0 -3
  678. data/test/results/omopv4_plus/complement/count_union_and_intersect +0 -4
  679. data/test/results/omopv4_plus/complement/crit_basic1 +0 -52483
  680. data/test/results/omopv4_plus/complement/crit_icd9_selector +0 -52
  681. data/test/results/omopv4_plus/complex/anno_1 +0 -85
  682. data/test/results/omopv4_plus/complex/crit_1 +0 -2
  683. data/test/results/omopv4_plus/complex/crit_2 +0 -2
  684. data/test/results/omopv4_plus/complex/crit_3 +0 -2
  685. data/test/results/omopv4_plus/complex/crit_4 +0 -2
  686. data/test/results/omopv4_plus/complex/crit_5 +0 -2
  687. data/test/results/omopv4_plus/complex/crit_6 +0 -24
  688. data/test/results/omopv4_plus/complex/crit_7 +0 -45
  689. data/test/results/omopv4_plus/complex/crit_out_of_order_ctes +0 -15
  690. data/test/results/omopv4_plus/complex/scanno_1 +0 -108
  691. data/test/results/omopv4_plus/concurrent_within/crit_icd9 +0 -52
  692. data/test/results/omopv4_plus/concurrent_within/crit_icd9_and_place_of_service +0 -21
  693. data/test/results/omopv4_plus/concurrent_within/crit_negative_start +0 -5
  694. data/test/results/omopv4_plus/condition_type/anno_icd9 +0 -39
  695. data/test/results/omopv4_plus/condition_type/count_condition_era +0 -2
  696. data/test/results/omopv4_plus/condition_type/count_condition_era_30_day_window +0 -2
  697. data/test/results/omopv4_plus/condition_type/count_ehr_problem_list +0 -2
  698. data/test/results/omopv4_plus/condition_type/count_era_0 +0 -2
  699. data/test/results/omopv4_plus/condition_type/count_inpatient +0 -3
  700. data/test/results/omopv4_plus/condition_type/count_inpatient_detail +0 -2
  701. data/test/results/omopv4_plus/condition_type/count_inpatient_header +0 -3
  702. data/test/results/omopv4_plus/condition_type/count_inpatient_header_2 +0 -3
  703. data/test/results/omopv4_plus/condition_type/count_inpatient_header_3 +0 -3
  704. data/test/results/omopv4_plus/condition_type/count_inpatient_header_4 +0 -3
  705. data/test/results/omopv4_plus/condition_type/count_inpatient_header_5 +0 -3
  706. data/test/results/omopv4_plus/condition_type/count_inpatient_outpatient_detail +0 -3
  707. data/test/results/omopv4_plus/condition_type/count_inpatient_primary +0 -3
  708. data/test/results/omopv4_plus/condition_type/count_inpatient_primary_or_first +0 -3
  709. data/test/results/omopv4_plus/condition_type/count_outpatient +0 -3
  710. data/test/results/omopv4_plus/condition_type/count_outpatient_detail +0 -2
  711. data/test/results/omopv4_plus/condition_type/count_outpatient_header +0 -3
  712. data/test/results/omopv4_plus/condition_type/count_outpatient_primary +0 -3
  713. data/test/results/omopv4_plus/condition_type/count_primary +0 -3
  714. data/test/results/omopv4_plus/contains/crit_1 +0 -5
  715. data/test/results/omopv4_plus/contains/crit_2 +0 -2
  716. data/test/results/omopv4_plus/contains/crit_3 +0 -2
  717. data/test/results/omopv4_plus/count/anno_multiple_upstreams +0 -52
  718. data/test/results/omopv4_plus/count/anno_no_upstream1 +0 -18
  719. data/test/results/omopv4_plus/count/anno_no_upstream2 +0 -25
  720. data/test/results/omopv4_plus/count/crit_icd9_ndc +0 -5
  721. data/test/results/omopv4_plus/count/crit_ndc +0 -2
  722. data/test/results/omopv4_plus/count/crit_person +0 -254
  723. data/test/results/omopv4_plus/cpt/anno_icd9_upstream +0 -40
  724. data/test/results/omopv4_plus/cpt/anno_invalid_code +0 -22
  725. data/test/results/omopv4_plus/cpt/count_1 +0 -3
  726. data/test/results/omopv4_plus/cpt/crit_1 +0 -158
  727. data/test/results/omopv4_plus/cpt/scanno_1 +0 -17
  728. data/test/results/omopv4_plus/cpt_or_hcpcs/anno_bad_format +0 -25
  729. data/test/results/omopv4_plus/cpt_or_hcpcs/count_1 +0 -3
  730. data/test/results/omopv4_plus/cpt_or_hcpcs/crit_1 +0 -161
  731. data/test/results/omopv4_plus/date_range/anno_1 +0 -15
  732. data/test/results/omopv4_plus/date_range/anno_extra_argument +0 -24
  733. data/test/results/omopv4_plus/date_range/anno_invalid_argument +0 -25
  734. data/test/results/omopv4_plus/date_range/anno_missing_argument1 +0 -20
  735. data/test/results/omopv4_plus/date_range/anno_missing_argument2 +0 -20
  736. data/test/results/omopv4_plus/date_range/anno_no_upstreams +0 -38
  737. data/test/results/omopv4_plus/date_range/count_1 +0 -3
  738. data/test/results/omopv4_plus/date_range/count_2 +0 -3
  739. data/test/results/omopv4_plus/death/anno_multiple_upstreams +0 -50
  740. data/test/results/omopv4_plus/death/anno_no_upstreams +0 -22
  741. data/test/results/omopv4_plus/death/crit_basic +0 -14
  742. data/test/results/omopv4_plus/death/crit_person +0 -14
  743. data/test/results/omopv4_plus/drug_type_concept/anno_has_upstreams +0 -37
  744. data/test/results/omopv4_plus/drug_type_concept/anno_no_arguments +0 -18
  745. data/test/results/omopv4_plus/drug_type_concept/crit_basic1 +0 -2
  746. data/test/results/omopv4_plus/drug_type_concept/crit_basic2 +0 -2
  747. data/test/results/omopv4_plus/during/crit_1 +0 -14
  748. data/test/results/omopv4_plus/during/crit_2 +0 -2
  749. data/test/results/omopv4_plus/equal/crit_1 +0 -2
  750. data/test/results/omopv4_plus/equal/crit_2 +0 -2
  751. data/test/results/omopv4_plus/except/anno_1 +0 -42
  752. data/test/results/omopv4_plus/except/anno_2 +0 -43
  753. data/test/results/omopv4_plus/except/count_complex +0 -5
  754. data/test/results/omopv4_plus/except/crit_412_cpt +0 -52
  755. data/test/results/omopv4_plus/except/crit_412_inpatient +0 -45
  756. data/test/results/omopv4_plus/filter/crit_1 +0 -52
  757. data/test/results/omopv4_plus/first/anno_argument +0 -25
  758. data/test/results/omopv4_plus/first/anno_no_upstream +0 -18
  759. data/test/results/omopv4_plus/first/crit_cpt +0 -180
  760. data/test/results/omopv4_plus/first/crit_icd9 +0 -41
  761. data/test/results/omopv4_plus/first/crit_union +0 -52
  762. data/test/results/omopv4_plus/from/anno_has_upstreams +0 -39
  763. data/test/results/omopv4_plus/from/anno_multiple_arguments +0 -24
  764. data/test/results/omopv4_plus/from/count_condition_occurrence +0 -3
  765. data/test/results/omopv4_plus/from/count_observation_period +0 -3
  766. data/test/results/omopv4_plus/from/count_person +0 -3
  767. data/test/results/omopv4_plus/from_seer_visits/anno_multiple_upstreams +0 -78
  768. data/test/results/omopv4_plus/from_seer_visits/anno_no_upstream +0 -18
  769. data/test/results/omopv4_plus/from_seer_visits/crit_1 +0 -2
  770. data/test/results/omopv4_plus/from_seer_visits/crit_2 +0 -2
  771. data/test/results/omopv4_plus/from_seer_visits/crit_3 +0 -2
  772. data/test/results/omopv4_plus/from_seer_visits/crit_4 +0 -2
  773. data/test/results/omopv4_plus/gender/anno_has_upstreams +0 -39
  774. data/test/results/omopv4_plus/gender/crit_male +0 -128
  775. data/test/results/omopv4_plus/hcpcs/anno_bad_format +0 -24
  776. data/test/results/omopv4_plus/hcpcs/crit_A0382 +0 -7
  777. data/test/results/omopv4_plus/icd10/anno_bad_format +0 -22
  778. data/test/results/omopv4_plus/icd10/anno_has_upstreams +0 -40
  779. data/test/results/omopv4_plus/icd10/crit_1 +0 -2
  780. data/test/results/omopv4_plus/icd10pcs/anno_bad_format +0 -28
  781. data/test/results/omopv4_plus/icd10pcs/anno_has_upstreams +0 -40
  782. data/test/results/omopv4_plus/icd10pcs/crit_1 +0 -2
  783. data/test/results/omopv4_plus/icd9/anno_empty_label +0 -15
  784. data/test/results/omopv4_plus/icd9/anno_invalid_code +0 -21
  785. data/test/results/omopv4_plus/icd9/anno_valid_code +0 -3
  786. data/test/results/omopv4_plus/icd9/crit_1 +0 -52
  787. data/test/results/omopv4_plus/icd9_procedure/crit_1 +0 -5
  788. data/test/results/omopv4_plus/intersect/anno_412_inpatient +0 -42
  789. data/test/results/omopv4_plus/intersect/anno_has_arguments +0 -25
  790. data/test/results/omopv4_plus/intersect/anno_no_upstream +0 -18
  791. data/test/results/omopv4_plus/intersect/crit_412_inpatient +0 -11
  792. data/test/results/omopv4_plus/intersect/crit_412_male +0 -178
  793. data/test/results/omopv4_plus/intersect/crit_complex +0 -110
  794. data/test/results/omopv4_plus/invalid/anno_bad_op +0 -55
  795. data/test/results/omopv4_plus/invalid/scanno_1 +0 -23
  796. data/test/results/omopv4_plus/last/crit_icd9 +0 -41
  797. data/test/results/omopv4_plus/loinc/crit_basic +0 -2
  798. data/test/results/omopv4_plus/ndc/crit_basic +0 -2
  799. data/test/results/omopv4_plus/ndc/results_1 +0 -41
  800. data/test/results/omopv4_plus/numeric/anno_multiple_upstreams +0 -59
  801. data/test/results/omopv4_plus/numeric/num_values_1 +0 -254
  802. data/test/results/omopv4_plus/numeric/num_values_2 +0 -5
  803. data/test/results/omopv4_plus/numeric/num_values_3 +0 -5
  804. data/test/results/omopv4_plus/observation_period/anno_has_arguments +0 -36
  805. data/test/results/omopv4_plus/observation_period/anno_multiple_upstreams +0 -51
  806. data/test/results/omopv4_plus/observation_period/count_all_periods +0 -3
  807. data/test/results/omopv4_plus/observation_period/crit_female +0 -87
  808. data/test/results/omopv4_plus/observation_period/crit_icd9 +0 -28
  809. data/test/results/omopv4_plus/observation_period/crit_male +0 -75
  810. data/test/results/omopv4_plus/occurrence/anno_no_upstream +0 -22
  811. data/test/results/omopv4_plus/occurrence/count_412_410 +0 -3
  812. data/test/results/omopv4_plus/occurrence/crit_1 +0 -15
  813. data/test/results/omopv4_plus/occurrence/crit_2 +0 -2
  814. data/test/results/omopv4_plus/occurrence/crit_3 +0 -41
  815. data/test/results/omopv4_plus/one_in_two_out/anno_has_arguments +0 -27
  816. data/test/results/omopv4_plus/one_in_two_out/anno_multiple_upstreams +0 -54
  817. data/test/results/omopv4_plus/one_in_two_out/anno_no_upstream +0 -20
  818. data/test/results/omopv4_plus/one_in_two_out/count_1 +0 -3
  819. data/test/results/omopv4_plus/one_in_two_out/count_same_as_1 +0 -3
  820. data/test/results/omopv4_plus/one_in_two_out/crit_hcpcs +0 -2
  821. data/test/results/omopv4_plus/one_in_two_out/crit_icd9 +0 -19
  822. data/test/results/omopv4_plus/one_in_two_out/results_1 +0 -803
  823. data/test/results/omopv4_plus/one_in_two_out/results_2 +0 -803
  824. data/test/results/omopv4_plus/overlapped_by/crit_1 +0 -5
  825. data/test/results/omopv4_plus/overlapped_by/crit_2 +0 -2
  826. data/test/results/omopv4_plus/overlapped_by/crit_3 +0 -5
  827. data/test/results/omopv4_plus/overlapped_by/crit_4 +0 -2
  828. data/test/results/omopv4_plus/overlaps/crit_1 +0 -5
  829. data/test/results/omopv4_plus/overlaps/crit_2 +0 -2
  830. data/test/results/omopv4_plus/overlaps/crit_3 +0 -5
  831. data/test/results/omopv4_plus/overlaps/crit_4 +0 -2
  832. data/test/results/omopv4_plus/person/anno_has_arguments +0 -22
  833. data/test/results/omopv4_plus/person/anno_multiple_upstreams +0 -52
  834. data/test/results/omopv4_plus/person/count_2 +0 -3
  835. data/test/results/omopv4_plus/person/crit_1 +0 -41
  836. data/test/results/omopv4_plus/person_filter/count_1 +0 -4
  837. data/test/results/omopv4_plus/person_filter/crit_1 +0 -52
  838. data/test/results/omopv4_plus/person_filter/crit_2 +0 -10
  839. data/test/results/omopv4_plus/person_filter/crit_3 +0 -32
  840. data/test/results/omopv4_plus/person_filter/crit_4 +0 -50
  841. data/test/results/omopv4_plus/place_of_service_code/anno_has_upstreams +0 -37
  842. data/test/results/omopv4_plus/place_of_service_code/anno_no_arguments +0 -18
  843. data/test/results/omopv4_plus/place_of_service_code/crit_basic +0 -157
  844. data/test/results/omopv4_plus/place_of_service_filter/anno_1 +0 -29
  845. data/test/results/omopv4_plus/procedure_occurrence/anno_has_arguments +0 -37
  846. data/test/results/omopv4_plus/procedure_occurrence/anno_multiple_upstreams +0 -51
  847. data/test/results/omopv4_plus/procedure_occurrence/count_gender +0 -3
  848. data/test/results/omopv4_plus/procedure_occurrence/count_icd9 +0 -3
  849. data/test/results/omopv4_plus/procedure_occurrence/count_started_by +0 -3
  850. data/test/results/omopv4_plus/provenance/anno_1 +0 -29
  851. data/test/results/omopv4_plus/provenance/anno_bad_keyword +0 -38
  852. data/test/results/omopv4_plus/provenance/count_1 +0 -3
  853. data/test/results/omopv4_plus/provenance/count_2 +0 -3
  854. data/test/results/omopv4_plus/provider_filter/anno_1 +0 -29
  855. data/test/results/omopv4_plus/race/anno_1 +0 -37
  856. data/test/results/omopv4_plus/race/anno_2 +0 -18
  857. data/test/results/omopv4_plus/race/crit_1 +0 -32
  858. data/test/results/omopv4_plus/read/anno_1 +0 -15
  859. data/test/results/omopv4_plus/read/crit_1 +0 -2
  860. data/test/results/omopv4_plus/recall/anno_1 +0 -54
  861. data/test/results/omopv4_plus/recall/anno_2 +0 -66
  862. data/test/results/omopv4_plus/recall/anno_3 +0 -20
  863. data/test/results/omopv4_plus/recall/anno_4 +0 -18
  864. data/test/results/omopv4_plus/recall/anno_5 +0 -24
  865. data/test/results/omopv4_plus/recall/anno_6 +0 -270
  866. data/test/results/omopv4_plus/recall/crit_1 +0 -19
  867. data/test/results/omopv4_plus/recall/crit_2 +0 -52
  868. data/test/results/omopv4_plus/recall/crit_3 +0 -2
  869. data/test/results/omopv4_plus/recall/crit_cte_1 +0 -41
  870. data/test/results/omopv4_plus/recall/crit_cte_2 +0 -41
  871. data/test/results/omopv4_plus/recall/crit_nested_perm_0 +0 -52
  872. data/test/results/omopv4_plus/revenue_code/crit_1 +0 -2
  873. data/test/results/omopv4_plus/revenue_code/crit_basic +0 -2
  874. data/test/results/omopv4_plus/revenue_code/domains_1 +0 -3
  875. data/test/results/omopv4_plus/revenue_code/domains_drg100 +0 -3
  876. data/test/results/omopv4_plus/rxnorm/crit_1 +0 -2
  877. data/test/results/omopv4_plus/snomed/crit_1 +0 -2
  878. data/test/results/omopv4_plus/started_by/crit_1 +0 -5
  879. data/test/results/omopv4_plus/started_by/crit_2 +0 -2
  880. data/test/results/omopv4_plus/started_by/crit_3 +0 -2
  881. data/test/results/omopv4_plus/sum/anno_1 +0 -18
  882. data/test/results/omopv4_plus/sum/anno_2 +0 -36
  883. data/test/results/omopv4_plus/sum/num_1 +0 -2
  884. data/test/results/omopv4_plus/sum/num_2 +0 -5
  885. data/test/results/omopv4_plus/sum/num_3 +0 -254
  886. data/test/results/omopv4_plus/time_window/anno_1 +0 -20
  887. data/test/results/omopv4_plus/time_window/anno_2 +0 -40
  888. data/test/results/omopv4_plus/time_window/anno_3 +0 -36
  889. data/test/results/omopv4_plus/time_window/anno_4 +0 -39
  890. data/test/results/omopv4_plus/time_window/anno_5 +0 -57
  891. data/test/results/omopv4_plus/time_window/crit_1 +0 -52
  892. data/test/results/omopv4_plus/time_window/crit_2 +0 -157
  893. data/test/results/omopv4_plus/time_window/crit_3 +0 -52
  894. data/test/results/omopv4_plus/time_window/crit_4 +0 -157
  895. data/test/results/omopv4_plus/trim_date_end/crit_1 +0 -5
  896. data/test/results/omopv4_plus/trim_date_end/crit_2 +0 -2
  897. data/test/results/omopv4_plus/trim_date_end/crit_3 +0 -6
  898. data/test/results/omopv4_plus/trim_date_end/crit_at_least +0 -5
  899. data/test/results/omopv4_plus/trim_date_end/crit_occurrences_1 +0 -2
  900. data/test/results/omopv4_plus/trim_date_end/crit_occurrences_2 +0 -6
  901. data/test/results/omopv4_plus/trim_date_end/crit_within +0 -5
  902. data/test/results/omopv4_plus/trim_date_start/crit_1 +0 -5
  903. data/test/results/omopv4_plus/trim_date_start/crit_2 +0 -2
  904. data/test/results/omopv4_plus/trim_date_start/crit_3 +0 -6
  905. data/test/results/omopv4_plus/trim_date_start/crit_at_least +0 -5
  906. data/test/results/omopv4_plus/trim_date_start/crit_occurrences_1 +0 -2
  907. data/test/results/omopv4_plus/trim_date_start/crit_occurrences_2 +0 -6
  908. data/test/results/omopv4_plus/trim_date_start/crit_within +0 -5
  909. data/test/results/omopv4_plus/union/anno_1 +0 -43
  910. data/test/results/omopv4_plus/union/anno_2 +0 -74
  911. data/test/results/omopv4_plus/union/anno_3 +0 -18
  912. data/test/results/omopv4_plus/union/anno_4 +0 -25
  913. data/test/results/omopv4_plus/union/anno_5 +0 -33
  914. data/test/results/omopv4_plus/union/anno_6 +0 -46
  915. data/test/results/omopv4_plus/union/count_1 +0 -3
  916. data/test/results/omopv4_plus/union/count_2 +0 -3
  917. data/test/results/omopv4_plus/union/count_3 +0 -3
  918. data/test/results/omopv4_plus/union/count_4 +0 -3
  919. data/test/results/omopv4_plus/union/count_5 +0 -4
  920. data/test/results/omopv4_plus/union/optcc_1 +0 -3
  921. data/test/results/omopv4_plus/union/optcc_2 +0 -3
  922. data/test/results/omopv4_plus/union/optcc_3 +0 -3
  923. data/test/results/omopv4_plus/union/optcc_4 +0 -3
  924. data/test/results/omopv4_plus/union/optcc_5 +0 -3
  925. data/test/results/omopv4_plus/union/optcc_6 +0 -3
  926. data/test/results/omopv4_plus/union/scanno_1 +0 -22
  927. data/test/results/omopv4_plus/union/scanno_2 +0 -36
  928. data/test/results/omopv4_plus/visit_occurrence/anno_1 +0 -52
  929. data/test/results/omopv4_plus/visit_occurrence/anno_2 +0 -37
  930. data/test/results/omopv4_plus/visit_occurrence/crit_1 +0 -52
  931. data/test/results/omopv4_plus/visit_occurrence/crit_2 +0 -22945
  932. data/test/results/omopv4_plus/visit_occurrence/crit_3 +0 -46851
  933. data/test/statements/after/anno_1 +0 -7
  934. data/test/statements/after/anno_2 +0 -16
  935. data/test/statements/after/anno_3 +0 -9
  936. data/test/statements/after/anno_4 +0 -19
  937. data/test/statements/after/anno_5 +0 -21
  938. data/test/statements/after/anno_6 +0 -16
  939. data/test/statements/after/crit_at_least +0 -21
  940. data/test/statements/after/crit_basic +0 -20
  941. data/test/statements/after/crit_occurrences +0 -21
  942. data/test/statements/after/crit_within +0 -21
  943. data/test/statements/any_overlap/crit_basic1 +0 -16
  944. data/test/statements/any_overlap/crit_basic2 +0 -16
  945. data/test/statements/any_overlap/crit_occurrences1 +0 -17
  946. data/test/statements/any_overlap/crit_occurrences2 +0 -17
  947. data/test/statements/any_overlap/crit_within +0 -17
  948. data/test/statements/before/crit_at_least +0 -14
  949. data/test/statements/before/crit_basic1 +0 -13
  950. data/test/statements/before/crit_basic2 +0 -16
  951. data/test/statements/before/crit_occurrences +0 -14
  952. data/test/statements/before/crit_within +0 -14
  953. data/test/statements/co_reported/anno_1 +0 -13
  954. data/test/statements/co_reported/anno_2 +0 -21
  955. data/test/statements/co_reported/anno_3 +0 -14
  956. data/test/statements/complement/anno_duplicate_params +0 -11
  957. data/test/statements/complement/anno_invalid_params +0 -8
  958. data/test/statements/complement/anno_no_params +0 -3
  959. data/test/statements/complement/count_3way_intersect +0 -24
  960. data/test/statements/complement/count_3way_union +0 -18
  961. data/test/statements/complement/count_intersect +0 -17
  962. data/test/statements/complement/count_union +0 -14
  963. data/test/statements/complement/count_union_and_intersect +0 -27
  964. data/test/statements/complement/crit_basic1 +0 -7
  965. data/test/statements/complement/crit_icd9_selector +0 -10
  966. data/test/statements/complex/anno_1 +0 -29
  967. data/test/statements/complex/crit_1 +0 -278
  968. data/test/statements/complex/crit_2 +0 -43
  969. data/test/statements/complex/crit_3 +0 -54
  970. data/test/statements/complex/crit_4 +0 -17
  971. data/test/statements/complex/crit_5 +0 -17
  972. data/test/statements/complex/crit_6 +0 -20
  973. data/test/statements/complex/crit_7 +0 -14
  974. data/test/statements/complex/crit_out_of_order_ctes +0 -39
  975. data/test/statements/complex/scanno_1 +0 -1508
  976. data/test/statements/concurrent_within/crit_icd9 +0 -11
  977. data/test/statements/concurrent_within/crit_icd9_and_place_of_service +0 -15
  978. data/test/statements/concurrent_within/crit_negative_start +0 -15
  979. data/test/statements/condition_type/anno_icd9 +0 -7
  980. data/test/statements/condition_type/count_condition_era +0 -4
  981. data/test/statements/condition_type/count_condition_era_30_day_window +0 -4
  982. data/test/statements/condition_type/count_ehr_problem_list +0 -4
  983. data/test/statements/condition_type/count_era_0 +0 -4
  984. data/test/statements/condition_type/count_inpatient +0 -4
  985. data/test/statements/condition_type/count_inpatient_detail +0 -4
  986. data/test/statements/condition_type/count_inpatient_header +0 -4
  987. data/test/statements/condition_type/count_inpatient_header_2 +0 -4
  988. data/test/statements/condition_type/count_inpatient_header_3 +0 -4
  989. data/test/statements/condition_type/count_inpatient_header_4 +0 -4
  990. data/test/statements/condition_type/count_inpatient_header_5 +0 -4
  991. data/test/statements/condition_type/count_inpatient_outpatient_detail +0 -5
  992. data/test/statements/condition_type/count_inpatient_primary +0 -4
  993. data/test/statements/condition_type/count_inpatient_primary_or_first +0 -4
  994. data/test/statements/condition_type/count_outpatient +0 -4
  995. data/test/statements/condition_type/count_outpatient_detail +0 -4
  996. data/test/statements/condition_type/count_outpatient_header +0 -4
  997. data/test/statements/condition_type/count_outpatient_primary +0 -4
  998. data/test/statements/condition_type/count_primary +0 -4
  999. data/test/statements/contains/crit_1 +0 -16
  1000. data/test/statements/contains/crit_2 +0 -16
  1001. data/test/statements/contains/crit_3 +0 -16
  1002. data/test/statements/count/anno_multiple_upstreams +0 -11
  1003. data/test/statements/count/anno_no_upstream1 +0 -3
  1004. data/test/statements/count/anno_no_upstream2 +0 -4
  1005. data/test/statements/count/crit_icd9_ndc +0 -15
  1006. data/test/statements/count/crit_ndc +0 -11
  1007. data/test/statements/count/crit_person +0 -7
  1008. data/test/statements/cpt/anno_icd9_upstream +0 -7
  1009. data/test/statements/cpt/anno_invalid_code +0 -5
  1010. data/test/statements/cpt/count_1 +0 -4
  1011. data/test/statements/cpt/crit_1 +0 -4
  1012. data/test/statements/cpt/scanno_1 +0 -4
  1013. data/test/statements/cpt_or_hcpcs/anno_bad_format +0 -7
  1014. data/test/statements/cpt_or_hcpcs/count_1 +0 -5
  1015. data/test/statements/cpt_or_hcpcs/crit_1 +0 -5
  1016. data/test/statements/date_range/anno_1 +0 -7
  1017. data/test/statements/date_range/anno_extra_argument +0 -8
  1018. data/test/statements/date_range/anno_invalid_argument +0 -7
  1019. data/test/statements/date_range/anno_missing_argument1 +0 -6
  1020. data/test/statements/date_range/anno_missing_argument2 +0 -6
  1021. data/test/statements/date_range/anno_no_upstreams +0 -11
  1022. data/test/statements/date_range/count_1 +0 -7
  1023. data/test/statements/date_range/count_2 +0 -7
  1024. data/test/statements/death/anno_multiple_upstreams +0 -10
  1025. data/test/statements/death/anno_no_upstreams +0 -4
  1026. data/test/statements/death/crit_basic +0 -3
  1027. data/test/statements/death/crit_person +0 -7
  1028. data/test/statements/drug_type_concept/anno_has_upstreams +0 -8
  1029. data/test/statements/drug_type_concept/anno_no_arguments +0 -3
  1030. data/test/statements/drug_type_concept/crit_basic1 +0 -4
  1031. data/test/statements/drug_type_concept/crit_basic2 +0 -4
  1032. data/test/statements/during/crit_1 +0 -16
  1033. data/test/statements/during/crit_2 +0 -16
  1034. data/test/statements/equal/crit_1 +0 -17
  1035. data/test/statements/equal/crit_2 +0 -21
  1036. data/test/statements/except/anno_1 +0 -13
  1037. data/test/statements/except/anno_2 +0 -14
  1038. data/test/statements/except/count_complex +0 -31
  1039. data/test/statements/except/crit_412_cpt +0 -13
  1040. data/test/statements/except/crit_412_inpatient +0 -13
  1041. data/test/statements/filter/crit_1 +0 -15
  1042. data/test/statements/first/anno_argument +0 -4
  1043. data/test/statements/first/anno_no_upstream +0 -3
  1044. data/test/statements/first/crit_cpt +0 -7
  1045. data/test/statements/first/crit_icd9 +0 -7
  1046. data/test/statements/first/crit_union +0 -14
  1047. data/test/statements/from/anno_has_upstreams +0 -7
  1048. data/test/statements/from/anno_multiple_arguments +0 -5
  1049. data/test/statements/from_seer_visits/anno_multiple_upstreams +0 -17
  1050. data/test/statements/from_seer_visits/anno_no_upstream +0 -3
  1051. data/test/statements/from_seer_visits/crit_1 +0 -10
  1052. data/test/statements/from_seer_visits/crit_2 +0 -11
  1053. data/test/statements/from_seer_visits/crit_3 +0 -11
  1054. data/test/statements/from_seer_visits/crit_4 +0 -12
  1055. data/test/statements/gender/anno_has_upstreams +0 -7
  1056. data/test/statements/gender/crit_male +0 -4
  1057. data/test/statements/hcpcs/anno_bad_format +0 -6
  1058. data/test/statements/hcpcs/crit_A0382 +0 -4
  1059. data/test/statements/icd10/anno_bad_format +0 -5
  1060. data/test/statements/icd10/anno_has_upstreams +0 -7
  1061. data/test/statements/icd10/crit_1 +0 -4
  1062. data/test/statements/icd10pcs/anno_bad_format +0 -6
  1063. data/test/statements/icd10pcs/anno_has_upstreams +0 -7
  1064. data/test/statements/icd10pcs/crit_1 +0 -4
  1065. data/test/statements/icd9/anno_empty_label +0 -7
  1066. data/test/statements/icd9/anno_invalid_code +0 -4
  1067. data/test/statements/icd9/anno_valid_code +0 -4
  1068. data/test/statements/icd9/crit_1 +0 -4
  1069. data/test/statements/icd9_procedure/crit_1 +0 -4
  1070. data/test/statements/intersect/anno_412_inpatient +0 -11
  1071. data/test/statements/intersect/anno_has_arguments +0 -4
  1072. data/test/statements/intersect/anno_no_upstream +0 -3
  1073. data/test/statements/intersect/crit_412_inpatient +0 -11
  1074. data/test/statements/intersect/crit_412_male +0 -11
  1075. data/test/statements/intersect/crit_complex +0 -19
  1076. data/test/statements/invalid/anno_bad_op +0 -13
  1077. data/test/statements/invalid/scanno_1 +0 -7
  1078. data/test/statements/last/crit_icd9 +0 -7
  1079. data/test/statements/loinc/crit_basic +0 -4
  1080. data/test/statements/ndc/crit_basic +0 -4
  1081. data/test/statements/ndc/results_1 +0 -4
  1082. data/test/statements/numeric/anno_multiple_upstreams +0 -11
  1083. data/test/statements/numeric/num_values_1 +0 -4
  1084. data/test/statements/numeric/num_values_2 +0 -8
  1085. data/test/statements/numeric/num_values_3 +0 -8
  1086. data/test/statements/observation_period/anno_has_arguments +0 -8
  1087. data/test/statements/observation_period/anno_multiple_upstreams +0 -11
  1088. data/test/statements/observation_period/count_all_periods +0 -4
  1089. data/test/statements/observation_period/crit_female +0 -7
  1090. data/test/statements/observation_period/crit_icd9 +0 -7
  1091. data/test/statements/observation_period/crit_male +0 -7
  1092. data/test/statements/occurrence/anno_no_upstream +0 -3
  1093. data/test/statements/occurrence/count_412_410 +0 -17
  1094. data/test/statements/occurrence/crit_1 +0 -8
  1095. data/test/statements/occurrence/crit_2 +0 -11
  1096. data/test/statements/occurrence/crit_3 +0 -11
  1097. data/test/statements/one_in_two_out/anno_has_arguments +0 -8
  1098. data/test/statements/one_in_two_out/anno_multiple_upstreams +0 -15
  1099. data/test/statements/one_in_two_out/anno_no_upstream +0 -7
  1100. data/test/statements/one_in_two_out/count_1 +0 -10
  1101. data/test/statements/one_in_two_out/count_same_as_1 +0 -11
  1102. data/test/statements/one_in_two_out/crit_hcpcs +0 -10
  1103. data/test/statements/one_in_two_out/crit_icd9 +0 -11
  1104. data/test/statements/one_in_two_out/results_1 +0 -9
  1105. data/test/statements/one_in_two_out/results_2 +0 -9
  1106. data/test/statements/overlapped_by/crit_1 +0 -16
  1107. data/test/statements/overlapped_by/crit_2 +0 -16
  1108. data/test/statements/overlapped_by/crit_3 +0 -16
  1109. data/test/statements/overlapped_by/crit_4 +0 -16
  1110. data/test/statements/overlaps/crit_1 +0 -16
  1111. data/test/statements/overlaps/crit_2 +0 -16
  1112. data/test/statements/overlaps/crit_3 +0 -16
  1113. data/test/statements/overlaps/crit_4 +0 -16
  1114. data/test/statements/person/anno_has_arguments +0 -4
  1115. data/test/statements/person/anno_multiple_upstreams +0 -11
  1116. data/test/statements/person/count_2 +0 -3
  1117. data/test/statements/person/crit_1 +0 -7
  1118. data/test/statements/person_filter/count_1 +0 -20
  1119. data/test/statements/person_filter/crit_1 +0 -20
  1120. data/test/statements/person_filter/crit_2 +0 -13
  1121. data/test/statements/person_filter/crit_3 +0 -13
  1122. data/test/statements/person_filter/crit_4 +0 -13
  1123. data/test/statements/place_of_service_code/anno_has_upstreams +0 -8
  1124. data/test/statements/place_of_service_code/anno_no_arguments +0 -3
  1125. data/test/statements/place_of_service_code/crit_basic +0 -4
  1126. data/test/statements/place_of_service_filter/anno_1 +0 -8
  1127. data/test/statements/procedure_occurrence/anno_has_arguments +0 -8
  1128. data/test/statements/procedure_occurrence/anno_multiple_upstreams +0 -11
  1129. data/test/statements/procedure_occurrence/count_gender +0 -7
  1130. data/test/statements/procedure_occurrence/count_icd9 +0 -7
  1131. data/test/statements/procedure_occurrence/count_started_by +0 -19
  1132. data/test/statements/provenance/anno_1 +0 -8
  1133. data/test/statements/provenance/anno_bad_keyword +0 -10
  1134. data/test/statements/provenance/count_1 +0 -8
  1135. data/test/statements/provenance/count_2 +0 -8
  1136. data/test/statements/provider_filter/anno_1 +0 -10
  1137. data/test/statements/race/anno_1 +0 -8
  1138. data/test/statements/race/anno_2 +0 -3
  1139. data/test/statements/race/crit_1 +0 -4
  1140. data/test/statements/read/anno_1 +0 -4
  1141. data/test/statements/read/crit_1 +0 -8
  1142. data/test/statements/recall/anno_1 +0 -16
  1143. data/test/statements/recall/anno_2 +0 -18
  1144. data/test/statements/recall/anno_3 +0 -4
  1145. data/test/statements/recall/anno_4 +0 -3
  1146. data/test/statements/recall/anno_5 +0 -5
  1147. data/test/statements/recall/anno_6 +0 -107
  1148. data/test/statements/recall/crit_1 +0 -17
  1149. data/test/statements/recall/crit_2 +0 -14
  1150. data/test/statements/recall/crit_3 +0 -16
  1151. data/test/statements/recall/crit_cte_1 +0 -17
  1152. data/test/statements/recall/crit_cte_2 +0 -17
  1153. data/test/statements/recall/crit_nested_perm_0 +0 -28
  1154. data/test/statements/revenue_code/crit_1 +0 -4
  1155. data/test/statements/revenue_code/crit_basic +0 -4
  1156. data/test/statements/revenue_code/domains_1 +0 -4
  1157. data/test/statements/revenue_code/domains_drg100 +0 -4
  1158. data/test/statements/rxnorm/crit_1 +0 -4
  1159. data/test/statements/snomed/crit_1 +0 -4
  1160. data/test/statements/started_by/crit_1 +0 -16
  1161. data/test/statements/started_by/crit_2 +0 -16
  1162. data/test/statements/started_by/crit_3 +0 -16
  1163. data/test/statements/sum/anno_1 +0 -3
  1164. data/test/statements/sum/anno_2 +0 -8
  1165. data/test/statements/sum/num_1 +0 -11
  1166. data/test/statements/sum/num_2 +0 -15
  1167. data/test/statements/sum/num_3 +0 -7
  1168. data/test/statements/time_window/anno_1 +0 -7
  1169. data/test/statements/time_window/anno_2 +0 -11
  1170. data/test/statements/time_window/anno_3 +0 -11
  1171. data/test/statements/time_window/anno_4 +0 -12
  1172. data/test/statements/time_window/anno_5 +0 -15
  1173. data/test/statements/time_window/crit_1 +0 -11
  1174. data/test/statements/time_window/crit_2 +0 -11
  1175. data/test/statements/time_window/crit_3 +0 -11
  1176. data/test/statements/time_window/crit_4 +0 -11
  1177. data/test/statements/trim_date_end/crit_1 +0 -16
  1178. data/test/statements/trim_date_end/crit_2 +0 -16
  1179. data/test/statements/trim_date_end/crit_3 +0 -16
  1180. data/test/statements/trim_date_end/crit_at_least +0 -17
  1181. data/test/statements/trim_date_end/crit_occurrences_1 +0 -17
  1182. data/test/statements/trim_date_end/crit_occurrences_2 +0 -17
  1183. data/test/statements/trim_date_end/crit_within +0 -17
  1184. data/test/statements/trim_date_start/crit_1 +0 -16
  1185. data/test/statements/trim_date_start/crit_2 +0 -16
  1186. data/test/statements/trim_date_start/crit_3 +0 -16
  1187. data/test/statements/trim_date_start/crit_at_least +0 -17
  1188. data/test/statements/trim_date_start/crit_occurrences_1 +0 -17
  1189. data/test/statements/trim_date_start/crit_occurrences_2 +0 -17
  1190. data/test/statements/trim_date_start/crit_within +0 -17
  1191. data/test/statements/union/anno_1 +0 -11
  1192. data/test/statements/union/anno_2 +0 -18
  1193. data/test/statements/union/anno_3 +0 -3
  1194. data/test/statements/union/anno_4 +0 -4
  1195. data/test/statements/union/anno_5 +0 -7
  1196. data/test/statements/union/anno_6 +0 -10
  1197. data/test/statements/union/count_1 +0 -11
  1198. data/test/statements/union/count_2 +0 -11
  1199. data/test/statements/union/count_3 +0 -15
  1200. data/test/statements/union/count_4 +0 -18
  1201. data/test/statements/union/count_5 +0 -18
  1202. data/test/statements/union/scanno_1 +0 -3
  1203. data/test/statements/union/scanno_2 +0 -18
  1204. data/test/statements/visit_occurrence/anno_1 +0 -11
  1205. data/test/statements/visit_occurrence/anno_2 +0 -8
  1206. data/test/statements/visit_occurrence/crit_1 +0 -7
  1207. data/test/statements/visit_occurrence/crit_2 +0 -7
  1208. data/test/statements/visit_occurrence/crit_3 +0 -3
data/test/results/omopv4/recall/anno_2 DELETED
@@ -1,66 +0,0 @@
1
- [
2
- "union",
3
- [
4
- "icd9",
5
- "412",
6
- {
7
- "label": "Heart Attack",
8
- "annotation": {
9
- "counts": {
10
- "condition_occurrence": {
11
- "rows": 50,
12
- "n": 38
13
- }
14
- }
15
- },
16
- "name": "ICD-9 CM"
17
- }
18
- ],
19
- [
20
- "recall",
21
- [
22
- "icd9",
23
- "412",
24
- {
25
- "annotation": {
26
- "counts": {
27
- "condition_occurrence": {
28
- "rows": 50,
29
- "n": 38
30
- }
31
- }
32
- },
33
- "name": "ICD-9 CM"
34
- }
35
- ],
36
- "Heart Attack",
37
- {
38
- "annotation": {
39
- "counts": {
40
- "condition_occurrence": {
41
- "rows": 0,
42
- "n": 0
43
- }
44
- },
45
- "errors": [
46
- [
47
- "has upstreams",
48
- [
49
- "icd9"
50
- ]
51
- ]
52
- ]
53
- }
54
- }
55
- ],
56
- {
57
- "annotation": {
58
- "counts": {
59
- "condition_occurrence": {
60
- "rows": 0,
61
- "n": 0
62
- }
63
- }
64
- }
65
- }
66
- ]
data/test/results/omopv4/recall/anno_3 DELETED
@@ -1,20 +0,0 @@
1
- [
2
- "recall",
3
- "HA1",
4
- {
5
- "annotation": {
6
- "counts": {
7
- "invalid": {
8
- "rows": 0,
9
- "n": 0
10
- }
11
- },
12
- "errors": [
13
- [
14
- "no matching label",
15
- "HA1"
16
- ]
17
- ]
18
- }
19
- }
20
- ]
data/test/results/omopv4/recall/anno_4 DELETED
@@ -1,18 +0,0 @@
1
- [
2
- "recall",
3
- {
4
- "annotation": {
5
- "counts": {
6
- "invalid": {
7
- "rows": 0,
8
- "n": 0
9
- }
10
- },
11
- "errors": [
12
- [
13
- "has no arguments"
14
- ]
15
- ]
16
- }
17
- }
18
- ]
data/test/results/omopv4/recall/anno_5 DELETED
@@ -1,24 +0,0 @@
1
- [
2
- "recall",
3
- "foo",
4
- "bar",
5
- {
6
- "annotation": {
7
- "counts": {
8
- "invalid": {
9
- "rows": 0,
10
- "n": 0
11
- }
12
- },
13
- "errors": [
14
- [
15
- "has multiple arguments",
16
- [
17
- "foo",
18
- "bar"
19
- ]
20
- ]
21
- ]
22
- }
23
- }
24
- ]
data/test/results/omopv4/recall/anno_6 DELETED
@@ -1,270 +0,0 @@
1
- [
2
- "after",
3
- {
4
- "left": [
5
- "during",
6
- {
7
- "left": [
8
- "occurrence",
9
- [
10
- "icd9",
11
- "203.0x",
12
- {
13
- "label": "Meyloma Dx",
14
- "annotation": {
15
- "counts": {
16
- "condition_occurrence": {
17
- "rows": 0,
18
- "n": 0
19
- }
20
- },
21
- "warnings": [
22
- [
23
- "improperly formatted code",
24
- "203.0x"
25
- ]
26
- ]
27
- },
28
- "name": "ICD-9 CM"
29
- }
30
- ],
31
- 4,
32
- {
33
- "annotation": {
34
- "counts": {
35
- "condition_occurrence": {
36
- "rows": 0,
37
- "n": 0
38
- }
39
- }
40
- },
41
- "name": "Nth Occurrence"
42
- }
43
- ],
44
- "right": [
45
- "time_window",
46
- [
47
- "first",
48
- [
49
- "recall",
50
- "Meyloma Dx",
51
- {
52
- "annotation": {
53
- "counts": {
54
- "condition_occurrence": {
55
- "rows": 0,
56
- "n": 0
57
- }
58
- }
59
- }
60
- }
61
- ],
62
- {
63
- "annotation": {
64
- "counts": {
65
- "condition_occurrence": {
66
- "rows": 0,
67
- "n": 0
68
- }
69
- }
70
- }
71
- }
72
- ],
73
- {
74
- "start": "0",
75
- "end": "90d",
76
- "annotation": {
77
- "counts": {
78
- "condition_occurrence": {
79
- "rows": 0,
80
- "n": 0
81
- }
82
- }
83
- }
84
- }
85
- ],
86
- "annotation": {
87
- "counts": {
88
- "condition_occurrence": {
89
- "rows": 0,
90
- "n": 0
91
- }
92
- }
93
- }
94
- }
95
- ],
96
- "right": [
97
- "union",
98
- [
99
- "during",
100
- {
101
- "left": [
102
- "time_window",
103
- [
104
- "recall",
105
- "Qualifying Meyloma Dx",
106
- {
107
- "annotation": {
108
- "counts": {
109
- "invalid": {
110
- "rows": 0,
111
- "n": 0
112
- }
113
- },
114
- "errors": [
115
- [
116
- "no matching label",
117
- "Qualifying Meyloma Dx"
118
- ]
119
- ]
120
- }
121
- }
122
- ],
123
- {
124
- "start": "-90d",
125
- "end": "0",
126
- "label": "Meyloma 90-day Lookback",
127
- "annotation": {
128
- "counts": {
129
- "invalid": {
130
- "rows": 0,
131
- "n": 0
132
- }
133
- }
134
- }
135
- }
136
- ],
137
- "right": [
138
- "cpt",
139
- "38220",
140
- "38221",
141
- "85102",
142
- "85095",
143
- "3155F",
144
- "85097",
145
- "88237",
146
- "88271",
147
- "88275",
148
- "88291",
149
- "88305",
150
- {
151
- "label": "Bone Marrow",
152
- "annotation": {
153
- "counts": {
154
- "procedure_occurrence": {
155
- "rows": 0,
156
- "n": 0
157
- }
158
- }
159
- },
160
- "name": "CPT"
161
- }
162
- ],
163
- "annotation": {
164
- "counts": {
165
- "invalid": {
166
- "rows": 0,
167
- "n": 0
168
- }
169
- }
170
- }
171
- }
172
- ],
173
- [
174
- "occurrence",
175
- [
176
- "during",
177
- {
178
- "left": [
179
- "cpt",
180
- "84156",
181
- "84166",
182
- "86335",
183
- "84155",
184
- "84165",
185
- "86334",
186
- "83883",
187
- "81264",
188
- "82784",
189
- "82785",
190
- "82787",
191
- "82040",
192
- "82232",
193
- "77074",
194
- "77075",
195
- "83615",
196
- {
197
- "label": "Other Tests",
198
- "annotation": {
199
- "counts": {
200
- "procedure_occurrence": {
201
- "rows": 0,
202
- "n": 0
203
- }
204
- }
205
- },
206
- "name": "CPT"
207
- }
208
- ],
209
- "right": [
210
- "recall",
211
- "Meyloma 90-day Lookback",
212
- {
213
- "annotation": {
214
- "counts": {
215
- "invalid": {
216
- "rows": 0,
217
- "n": 0
218
- }
219
- }
220
- }
221
- }
222
- ],
223
- "annotation": {
224
- "counts": {
225
- "procedure_occurrence": {
226
- "rows": 0,
227
- "n": 0
228
- }
229
- }
230
- }
231
- }
232
- ],
233
- 2,
234
- {
235
- "annotation": {
236
- "counts": {
237
- "procedure_occurrence": {
238
- "rows": 0,
239
- "n": 0
240
- }
241
- }
242
- },
243
- "name": "Nth Occurrence"
244
- }
245
- ],
246
- {
247
- "annotation": {
248
- "counts": {
249
- "invalid": {
250
- "rows": 0,
251
- "n": 0
252
- },
253
- "procedure_occurrence": {
254
- "rows": 0,
255
- "n": 0
256
- }
257
- }
258
- }
259
- }
260
- ],
261
- "annotation": {
262
- "counts": {
263
- "condition_occurrence": {
264
- "rows": 0,
265
- "n": 0
266
- }
267
- }
268
- }
269
- }
270
- ]
data/test/results/omopv4/recall/crit_1 DELETED
@@ -1,21 +0,0 @@
1
- {
2
- "condition_occurrence": [
3
- 1829,
4
- 6083,
5
- 8618,
6
- 9882,
7
- 15149,
8
- 17774,
9
- 18412,
10
- 20005,
11
- 21619,
12
- 24437,
13
- 24707,
14
- 25309,
15
- 25888,
16
- 26766,
17
- 28188,
18
- 31542,
19
- 31877
20
- ]
21
- }
data/test/results/omopv4/recall/crit_2 DELETED
@@ -1,54 +0,0 @@
1
- {
2
- "condition_occurrence": [
3
- 1712,
4
- 1829,
5
- 4359,
6
- 5751,
7
- 6083,
8
- 6902,
9
- 7865,
10
- 8397,
11
- 8618,
12
- 9882,
13
- 10196,
14
- 10443,
15
- 10865,
16
- 13016,
17
- 13741,
18
- 15149,
19
- 17041,
20
- 17772,
21
- 17774,
22
- 18412,
23
- 18555,
24
- 19736,
25
- 20005,
26
- 20037,
27
- 21006,
28
- 21619,
29
- 21627,
30
- 22875,
31
- 22933,
32
- 24437,
33
- 24471,
34
- 24707,
35
- 24721,
36
- 24989,
37
- 25309,
38
- 25417,
39
- 25875,
40
- 25888,
41
- 26766,
42
- 27388,
43
- 28177,
44
- 28188,
45
- 30831,
46
- 31387,
47
- 31542,
48
- 31792,
49
- 31877,
50
- 32104,
51
- 32463,
52
- 32981
53
- ]
54
- }
data/test/results/omopv4/recall/crit_3 DELETED
@@ -1,2 +0,0 @@
1
- {
2
- }
data/test/results/omopv4/recall/crit_cte_1 DELETED
@@ -1,42 +0,0 @@
1
- {
2
- "condition_occurrence": [
3
- 1712,
4
- 4359,
5
- 5751,
6
- 6083,
7
- 6902,
8
- 7865,
9
- 8397,
10
- 8618,
11
- 9882,
12
- 10443,
13
- 10865,
14
- 13016,
15
- 13741,
16
- 15149,
17
- 17041,
18
- 17772,
19
- 18412,
20
- 18555,
21
- 19736,
22
- 20037,
23
- 21006,
24
- 21627,
25
- 22875,
26
- 22933,
27
- 24471,
28
- 24721,
29
- 24989,
30
- 25417,
31
- 25875,
32
- 26766,
33
- 27388,
34
- 28177,
35
- 30831,
36
- 31387,
37
- 31792,
38
- 32104,
39
- 32463,
40
- 32981
41
- ]
42
- }
data/test/results/omopv4/recall/crit_cte_2 DELETED
@@ -1,42 +0,0 @@
1
- {
2
- "condition_occurrence": [
3
- 1712,
4
- 4359,
5
- 5751,
6
- 6083,
7
- 6902,
8
- 7865,
9
- 8397,
10
- 8618,
11
- 9882,
12
- 10443,
13
- 10865,
14
- 13016,
15
- 13741,
16
- 15149,
17
- 17041,
18
- 17772,
19
- 18412,
20
- 18555,
21
- 19736,
22
- 20037,
23
- 21006,
24
- 21627,
25
- 22875,
26
- 22933,
27
- 24471,
28
- 24721,
29
- 24989,
30
- 25417,
31
- 25875,
32
- 26766,
33
- 27388,
34
- 28177,
35
- 30831,
36
- 31387,
37
- 31792,
38
- 32104,
39
- 32463,
40
- 32981
41
- ]
42
- }
data/test/results/omopv4/recall/crit_nested_perm_0 DELETED
@@ -1,54 +0,0 @@
1
- {
2
- "condition_occurrence": [
3
- 1712,
4
- 1829,
5
- 4359,
6
- 5751,
7
- 6083,
8
- 6902,
9
- 7865,
10
- 8397,
11
- 8618,
12
- 9882,
13
- 10196,
14
- 10443,
15
- 10865,
16
- 13016,
17
- 13741,
18
- 15149,
19
- 17041,
20
- 17772,
21
- 17774,
22
- 18412,
23
- 18555,
24
- 19736,
25
- 20005,
26
- 20037,
27
- 21006,
28
- 21619,
29
- 21627,
30
- 22875,
31
- 22933,
32
- 24437,
33
- 24471,
34
- 24707,
35
- 24721,
36
- 24989,
37
- 25309,
38
- 25417,
39
- 25875,
40
- 25888,
41
- 26766,
42
- 27388,
43
- 28177,
44
- 28188,
45
- 30831,
46
- 31387,
47
- 31542,
48
- 31792,
49
- 31877,
50
- 32104,
51
- 32463,
52
- 32981
53
- ]
54
- }
data/test/results/omopv4/revenue_code/crit_1 DELETED
@@ -1,2 +0,0 @@
1
- {
2
- }
data/test/results/omopv4/revenue_code/crit_basic DELETED
@@ -1,2 +0,0 @@
1
- {
2
- }
data/test/results/omopv4/revenue_code/domains_1 DELETED
@@ -1,3 +0,0 @@
1
- [
2
- "procedure_occurrence"
3
- ]
data/test/results/omopv4/revenue_code/domains_drg100 DELETED
@@ -1,3 +0,0 @@
1
- [
2
- "procedure_occurrence"
3
- ]
data/test/results/omopv4/rxnorm/crit_1 DELETED
@@ -1,5 +0,0 @@
1
- {
2
- "drug_exposure": [
3
- 2
4
- ]
5
- }