conceptql 0.1.1 → 0.2.0

data/spec/conceptql/nodes/source_vocabulary_node_spec.rb

@@ -1,37 +0,0 @@
-require 'spec_helper'
-require 'conceptql/nodes/source_vocabulary_node'
-
-describe ConceptQL::Nodes::SourceVocabularyNode do
-  it 'behaves itself' do
-    ConceptQL::Nodes::SourceVocabularyNode.new.must_behave_like(:evaluator)
-  end
-
-  class SourceVocabularyDouble < ConceptQL::Nodes::SourceVocabularyNode
-    def table
-      :table
-    end
-
-    def source_column
-      :source_column
-    end
-
-    def concept_column
-      :concept_column
-    end
-
-    def vocabulary_id
-      1
-    end
-  end
-
-  describe '#query' do
-    it 'works for single values' do
-      SourceVocabularyDouble.new('value').query(Sequel.mock).sql.must_equal "SELECT * FROM table AS tab INNER JOIN vocabulary.source_to_concept_map AS scm ON (scm.target_concept_id = tab.concept_column) WHERE ((scm.source_code IN ('value')) AND (scm.source_vocabulary_id = 1) AND (scm.source_code = tab.source_column))"
-    end
-
-    it 'works for multiple values' do
-      SourceVocabularyDouble.new('value1', 'value2').query(Sequel.mock).sql.must_equal "SELECT * FROM table AS tab INNER JOIN vocabulary.source_to_concept_map AS scm ON (scm.target_concept_id = tab.concept_column) WHERE ((scm.source_code IN ('value1', 'value2')) AND (scm.source_vocabulary_id = 1) AND (scm.source_code = tab.source_column))"
-    end
-  end
-end
-

data/spec/conceptql/nodes/standard_vocabulary_node_spec.rb

@@ -1,40 +0,0 @@
-require 'spec_helper'
-require 'conceptql/nodes/standard_vocabulary_node'
-
-describe ConceptQL::Nodes::StandardVocabularyNode do
-  it 'behaves itself' do
-    ConceptQL::Nodes::StandardVocabularyNode.new.must_behave_like(:evaluator)
-  end
-
-  class StandardVocabularyDouble < ConceptQL::Nodes::StandardVocabularyNode
-    def table
-      :table
-    end
-
-    def concept_column
-      :concept_column
-    end
-
-    def vocabulary_id
-      1
-    end
-  end
-
-  describe StandardVocabularyDouble do
-    it 'behaves itself' do
-      StandardVocabularyDouble.new.must_behave_like(:standard_vocabulary_node)
-    end
-  end
-
-  describe '#query' do
-    it 'works for single values' do
-      StandardVocabularyDouble.new('value').query(Sequel.mock).sql.must_equal "SELECT * FROM table AS tab INNER JOIN vocabulary.concept AS c ON (c.concept_id = tab.concept_column) WHERE ((c.concept_code IN ('value')) AND (c.vocabulary_id = 1))"
-    end
-
-    it 'works for multiple diagnoses' do
-      StandardVocabularyDouble.new('value1', 'value2').query(Sequel.mock).sql.must_equal "SELECT * FROM table AS tab INNER JOIN vocabulary.concept AS c ON (c.concept_id = tab.concept_column) WHERE ((c.concept_code IN ('value1', 'value2')) AND (c.vocabulary_id = 1))"
-    end
-  end
-end
-
-

data/spec/conceptql/nodes/started_by_spec.rb

@@ -1,25 +0,0 @@
-require 'spec_helper'
-require 'conceptql/nodes/started_by'
-require_double('stream_for_temporal')
-
-describe ConceptQL::Nodes::StartedBy do
-  it 'behaves itself' do
-    ConceptQL::Nodes::StartedBy.new.must_behave_like(:temporal_node)
-  end
-
-  subject do
-    ConceptQL::Nodes::StartedBy.new(left: StreamForTemporalDouble.new, right: StreamForTemporalDouble.new)
-  end
-
-  it 'should use proper where clause' do
-    subject.query(Sequel.mock).sql.must_match 'l.start_date = r.start_date'
-    subject.query(Sequel.mock).sql.must_match 'l.end_date > r.end_date'
-  end
-
-  it 'should use proper where clause when inclusive' do
-    sub = ConceptQL::Nodes::StartedBy.new(left: StreamForTemporalDouble.new, right: StreamForTemporalDouble.new, inclusive: true)
-    sub.query(Sequel.mock).sql.must_match 'l.start_date = r.start_date'
-    sub.query(Sequel.mock).sql.must_match 'l.end_date >= r.end_date'
-  end
-end
-

data/spec/conceptql/nodes/time_window_spec.rb

@@ -1,85 +0,0 @@
-require 'spec_helper'
-require 'conceptql/nodes/time_window'
-require 'conceptql/nodes/node'
-
-describe ConceptQL::Nodes::TimeWindow do
-  class Stream4TimeWindowDouble < ConceptQL::Nodes::Node
-    def types
-      [:visit_occurrence]
-    end
-
-    def query(db)
-      db.from(:table)
-    end
-  end
-
-  before do
-    @db_mock = Sequel.mock
-    @sequel_mock = Minitest::Mock.new
-    @sequel_mock.expect :expr, @sequel_mock, [:start_date]
-    @sequel_mock.expect :expr, @sequel_mock, [:end_date]
-    @sequel_mock.expect :as, @sequel_mock, [:start_date]
-    @sequel_mock.expect :as, @sequel_mock, [:end_date]
-  end
-
-  describe '#evaluate' do
-    it 'adjusts start by 1 day' do
-      @sequel_mock.expect :date_add, @sequel_mock, [@sequel_mock, days: 1]
-
-      stub_const(ConceptQL::Nodes::TimeWindow, :Sequel, @sequel_mock) do
-        ConceptQL::Nodes::TimeWindow.new(Stream4TimeWindowDouble.new, { start: 'd', end: '' }).evaluate(@db_mock)
-      end
-      @sequel_mock.verify
-    end
-
-    it 'adjusts start by 1 day' do
-      @sequel_mock.expect :date_add, @sequel_mock, [@sequel_mock, days: 1]
-      stub_const(ConceptQL::Nodes::TimeWindow, :Sequel, @sequel_mock) do
-        ConceptQL::Nodes::TimeWindow.new(Stream4TimeWindowDouble.new, { start: '', end: 'd' }).evaluate(@db_mock)
-      end
-      @sequel_mock.verify
-    end
-
-    it 'adjusts both values by 1 day' do
-      @sequel_mock.expect :date_add, @sequel_mock, [@sequel_mock, days: 1]
-      @sequel_mock.expect :date_add, @sequel_mock, [@sequel_mock, days: 1]
-      stub_const(ConceptQL::Nodes::TimeWindow, :Sequel, @sequel_mock) do
-        ConceptQL::Nodes::TimeWindow.new(Stream4TimeWindowDouble.new, { start: 'd', end: 'd' }).evaluate(@db_mock)
-      end
-      @sequel_mock.verify
-    end
-
-    it 'makes multiple adjustments to both values' do
-      @sequel_mock.expect :date_add, @sequel_mock, [@sequel_mock, days: 1]
-      @sequel_mock.expect :date_add, @sequel_mock, [@sequel_mock, months: 1]
-      @sequel_mock.expect :date_add, @sequel_mock, [@sequel_mock, years: 1]
-
-      @sequel_mock.expect :date_sub, @sequel_mock, [@sequel_mock, days: 1]
-      @sequel_mock.expect :date_sub, @sequel_mock, [@sequel_mock, months: 1]
-      @sequel_mock.expect :date_sub, @sequel_mock, [@sequel_mock, years: 1]
-
-      stub_const(ConceptQL::Nodes::TimeWindow, :Sequel, @sequel_mock) do
-        ConceptQL::Nodes::TimeWindow.new(Stream4TimeWindowDouble.new, { start: 'dmy', end: '-d-m-y' }).evaluate(@db_mock)
-      end
-      @sequel_mock.verify
-    end
-
-    it 'can set start_date to be end_date' do
-      ConceptQL::Nodes::TimeWindow.new(Stream4TimeWindowDouble.new, { start: 'end', end: '' }).evaluate(@db_mock)
-    end
-
-    it 'can set end_date to be start_date' do
-      ConceptQL::Nodes::TimeWindow.new(Stream4TimeWindowDouble.new, { start: '', end: 'start' }).evaluate(@db_mock)
-    end
-
-    it 'will swap start and end dates, though this is a bad idea but you should probably know about this' do
-      ConceptQL::Nodes::TimeWindow.new(Stream4TimeWindowDouble.new, { start: 'end', end: 'start' }).evaluate(@db_mock)
-    end
-
-    it 'handles nil arguments to both start and end' do
-      ConceptQL::Nodes::TimeWindow.new(Stream4TimeWindowDouble.new, { start: nil, end: nil }).evaluate(@db_mock)
-    end
-  end
-end
-
-

data/spec/conceptql/nodes/union_spec.rb

@@ -1,25 +0,0 @@
-require 'spec_helper'
-require 'conceptql/nodes/union'
-require_relative 'query_double'
-
-describe ConceptQL::Nodes::Union do
-  it 'behaves itself' do
-    ConceptQL::Nodes::Union.new.must_behave_like(:evaluator)
-  end
-
-  describe '#query' do
-    it 'works for multiple criteria' do
-      double1 = QueryDouble.new(1)
-      double2 = QueryDouble.new(2)
-      double3 = QueryDouble.new(3)
-      double1.must_behave_like(:evaluator)
-      ConceptQL::Nodes::Union.new(double1, double2, double3).query(Sequel.mock).sql.must_equal "SELECT * FROM (SELECT * FROM (SELECT * FROM table1 UNION ALL SELECT * FROM table2) AS t1 UNION ALL SELECT * FROM table3) AS t1"
-    end
-
-    it 'works for single criteria' do
-      double1 = QueryDouble.new(1)
-      double1.must_behave_like(:evaluator)
-      ConceptQL::Nodes::Union.new(double1).query(Sequel.mock).sql.must_equal "SELECT * FROM table1"
-    end
-  end
-end

data/spec/conceptql/nodes/visit_occurrence_spec.rb

@@ -1,12 +0,0 @@
-require 'spec_helper'
-require 'conceptql/nodes/visit_occurrence'
-require_double('stream_for_casting')
-
-describe ConceptQL::Nodes::CastingNode do
-  it 'behaves itself' do
-    ConceptQL::Nodes::VisitOccurrence.new.must_behave_like(:casting_node)
-  end
-end
-
-
-