RubyGems - commonmeta-ruby - Versions diffs - 3.3.3 → 3.3.5 - Mend

commonmeta-ruby 3.3.3 → 3.3.5

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data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml CHANGED Viewed

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+        \           <journal>\r\n              <journal_metadata language=\"en\">\r\n
+        \               <full_title>BMC Genomics</full_title>\r\n                <abbrev_title>BMC
+        Genomics</abbrev_title>\r\n                <issn media_type=\"electronic\">1471-2164</issn>\r\n
+        \             </journal_metadata>\r\n              <journal_issue>\r\n                <publication_date
+        media_type=\"print\">\r\n                  <month>12</month>\r\n                  <year>2006</year>\r\n
+        \               </publication_date>\r\n                <journal_volume>\r\n
+        \                 <volume>7</volume>\r\n                </journal_volume>\r\n
+        \               <issue>1</issue>\r\n              </journal_issue>\r\n              <journal_article
+        publication_type=\"full_text\">\r\n                <titles>\r\n                  <title>Finding
+        function: evaluation methods for functional genomic data</title>\r\n                </titles>\r\n
+        \               <contributors>\r\n                  <person_name sequence=\"first\"
+        contributor_role=\"author\">\r\n                    <given_name>Chad L</given_name>\r\n
+        \                   <surname>Myers</surname>\r\n                  </person_name>\r\n
+        \                 <person_name sequence=\"additional\" contributor_role=\"author\">\r\n
+        \                   <given_name>Daniel R</given_name>\r\n                    <surname>Barrett</surname>\r\n
+        \                 </person_name>\r\n                  <person_name sequence=\"additional\"
+        contributor_role=\"author\">\r\n                    <given_name>Matthew A</given_name>\r\n
+        \                   <surname>Hibbs</surname>\r\n                  </person_name>\r\n
+        \                 <person_name sequence=\"additional\" contributor_role=\"author\">\r\n
+        \                   <given_name>Curtis</given_name>\r\n                    <surname>Huttenhower</surname>\r\n
+        \                 </person_name>\r\n                  <person_name sequence=\"additional\"
+        contributor_role=\"author\">\r\n                    <given_name>Olga G</given_name>\r\n
+        \                   <surname>Troyanskaya</surname>\r\n                  </person_name>\r\n
+        \               </contributors>\r\n                <jats:abstract xmlns:jats=\"http://www.ncbi.nlm.nih.gov/JATS1\"
+        xml:lang=\"en\">\r\n                  <jats:title>Abstract</jats:title>\r\n
+        \                 <jats:sec>\r\n                    <jats:title>Background</jats:title>\r\n
+        \                   <jats:p>Accurate evaluation of the quality of genomic
+        or proteomic data and computational methods is vital to our ability to use
+        them for formulating novel biological hypotheses and directing further experiments.
+        There is currently no standard approach to evaluation in functional genomics.
+        Our analysis of existing approaches shows that they are inconsistent and contain
+        substantial functional biases that render the resulting evaluations misleading
+        both quantitatively and qualitatively. These problems make it essentially
+        impossible to compare computational methods or large-scale experimental datasets
+        and also result in conclusions that generalize poorly in most biological applications.</jats:p>\r\n
+        \                 </jats:sec>\r\n                  <jats:sec>\r\n                    <jats:title>Results</jats:title>\r\n
+        \                   <jats:p>We reveal issues with current evaluation methods
+        here and suggest new approaches to evaluation that facilitate accurate and
+        representative characterization of genomic methods and data. Specifically,
+        we describe a functional genomics gold standard based on curation by expert
+        biologists and demonstrate its use as an effective means of evaluation of
+        genomic approaches. Our evaluation framework and gold standard are freely
+        available to the community through our website.</jats:p>\r\n                  </jats:sec>\r\n
+        \                 <jats:sec>\r\n                    <jats:title>Conclusion</jats:title>\r\n
+        \                   <jats:p>Proper methods for evaluating genomic data and
+        computational approaches will determine how much we, as a community, are able
+        to learn from the wealth of available data. We propose one possible solution
+        to this problem here but emphasize that this topic warrants broader community
+        discussion.</jats:p>\r\n                  </jats:sec>\r\n                </jats:abstract>\r\n
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+        \                 <item_number item_number_type=\"article-number\">187</item_number>\r\n
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+        \         </crossref>\r\n        </doi_record>\r\n      </query>\r\n    </body>\r\n
+        \ </query_result>\r\n</crossref_result>"
+  recorded_at: Sun, 18 Jun 2023 15:25:24 GMT
 recorded_with: VCR 6.1.0