commonmeta-ruby 3.3.3 → 3.3.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (632) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile.lock +2 -2
  3. data/bin/commonmeta +2 -2
  4. data/commonmeta.gemspec +1 -1
  5. data/lib/commonmeta/cli.rb +7 -3
  6. data/lib/commonmeta/readers/json_feed_reader.rb +1 -1
  7. data/lib/commonmeta/utils.rb +34 -0
  8. data/lib/commonmeta/version.rb +1 -1
  9. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +14 -14
  10. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/crossref.yml +5 -5
  11. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/datacite.yml +5 -5
  12. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/jalc.yml +5 -5
  13. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/kisti.yml +5 -5
  14. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/medra.yml +5 -5
  15. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/not_found.yml +5 -5
  16. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/op.yml +5 -5
  17. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/crossref.yml +5 -5
  18. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +5 -5
  19. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite.yml +5 -5
  20. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite_doi_http.yml +5 -5
  21. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +5 -5
  22. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/cff-converter-python.yml +9 -7
  23. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff.yml +16 -14
  24. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff_repository_url.yml +14 -12
  25. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_codemeta_metadata/maremma.yml +10 -8
  26. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_codemeta_metadata/metadata_reports.yml +9 -7
  27. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +74 -74
  28. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +73 -73
  29. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +70 -70
  30. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/JaLC.yml +159 -159
  31. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/KISTI.yml +128 -128
  32. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/OP.yml +72 -72
  33. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/affiliation_is_space.yml +73 -73
  34. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/another_book.yml +109 -109
  35. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/another_book_chapter.yml +71 -71
  36. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/article_id_as_page_number.yml +74 -74
  37. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/author_literal.yml +82 -82
  38. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book.yml +71 -71
  39. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_chapter.yml +72 -72
  40. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_chapter_with_RDF_for_container.yml +70 -70
  41. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_oup.yml +69 -69
  42. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/component.yml +91 -91
  43. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dataset.yml +101 -102
  44. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dataset_usda.yml +133 -133
  45. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/date_in_future.yml +78 -78
  46. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dissertation.yml +100 -100
  47. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/empty_given_name.yml +72 -72
  48. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/invalid_date.yml +73 -73
  49. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article.yml +72 -72
  50. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_original_language_title.yml +70 -70
  51. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with.yml +76 -514
  52. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with_RDF_for_container.yml +70 -70
  53. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with_funding.yml +73 -73
  54. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_issue.yml +69 -69
  55. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/mEDRA.yml +69 -69
  56. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/markup.yml +78 -78
  57. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/missing_creator.yml +73 -73
  58. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_issn.yml +72 -72
  59. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles.yml +71 -70
  60. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml +716 -716
  61. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/not_found_error.yml +63 -63
  62. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/peer_review.yml +74 -74
  63. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/posted_content.yml +71 -71
  64. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/posted_content_copernicus.yml +73 -73
  65. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/report_osti.yml +117 -117
  66. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/vor_with_url.yml +75 -75
  67. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/yet_another_book.yml +69 -69
  68. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/yet_another_book_chapter.yml +70 -70
  69. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_raw/journal_article.yml +10 -10
  70. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/dissertation.yml +9 -9
  71. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/funding_references.yml +11 -11
  72. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/subject_scheme.yml +20 -20
  73. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_id.yml +6 -419
  74. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_post_uuid.yml +7 -260
  75. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_post_uuid_specific_prefix.yml +3 -136
  76. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/by_blog_id.yml +225 -1432
  77. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/not_indexed_posts.yml +1380 -2112
  78. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/unregistered_posts.yml +6 -172
  79. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blog_post_with_non-url_id.yml +7 -7
  80. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blogger_post.yml +12 -12
  81. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_author_name_suffix.yml +8 -8
  82. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_doi.yml +7 -7
  83. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_organizational_author.yml +3 -3
  84. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_without_doi.yml +8 -8
  85. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post.yml +8 -8
  86. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/substack_post_with_broken_reference.yml +90 -176
  87. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/syldavia_gazette_post_with_references.yml +25 -25
  88. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/upstream_post_with_references.yml +61 -61
  89. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post.yml +8 -8
  90. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_references.yml +20 -20
  91. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_familyName.yml +9 -9
  92. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_name_in_display-order_with_ORCID.yml +9 -9
  93. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/name_with_affiliation_crossref.yml +14 -14
  94. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/only_familyName_and_givenName.yml +43 -36
  95. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/BlogPosting.yml +158 -158
  96. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/BlogPosting_with_new_DOI.yml +162 -162
  97. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/get_schema_org_metadata_front_matter/BlogPosting.yml +178 -180
  98. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/harvard_dataverse.yml +226 -230
  99. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/pangaea.yml +43 -36
  100. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/upstream_blog.yml +94 -94
  101. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/zenodo.yml +14 -14
  102. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/DOI_RA_not_Crossref_or_DataCite.yml +5 -5
  103. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/unknown_DOI_prefix.yml +5 -5
  104. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/json_schema_errors/is_valid.yml +13 -13
  105. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/BlogPosting.yml +4 -4
  106. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/Dataset.yml +6 -6
  107. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/authors_with_affiliations.yml +14 -14
  108. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/climate_data.yml +6 -6
  109. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/from_schema_org.yml +159 -159
  110. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/keywords_subject_scheme.yml +6 -6
  111. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/maremma.yml +12 -10
  112. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/text.yml +4 -4
  113. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/with_data_citation.yml +14 -14
  114. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/with_pages.yml +12 -12
  115. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/Collection_of_Jupyter_notebooks.yml +9 -9
  116. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/SoftwareSourceCode_Zenodo.yml +17 -17
  117. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/SoftwareSourceCode_also_Zenodo.yml +12 -12
  118. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/ruby-cff.yml +16 -14
  119. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Dataset.yml +6 -6
  120. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article.yml +14 -14
  121. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml +19 -19
  122. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Missing_author.yml +12 -12
  123. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/interactive_resource_without_dates.yml +4 -4
  124. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/software_w/version.yml +6 -6
  125. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +4 -4
  126. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml +4 -4
  127. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/another_schema_org_from_front-matter.yml +27 -27
  128. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article.yml +4 -4
  129. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article_from_datacite.yml +4 -4
  130. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_doi.yml +8 -54
  131. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_organizational_author.yml +3 -3
  132. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_upstream_blog.yml +10 -53
  133. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_with_references.yml +62 -62
  134. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/posted_content.yml +15 -15
  135. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_another_science_blog.yml +6 -6
  136. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_front_matter.yml +29 -29
  137. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_upstream_blog.yml +4 -4
  138. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/Another_dataset.yml +28 -28
  139. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/BlogPosting.yml +4 -4
  140. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/BlogPosting_schema_org.yml +158 -158
  141. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/Dataset.yml +6 -6
  142. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/container_title.yml +11 -11
  143. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/interactive_resource_without_dates.yml +4 -4
  144. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/journal_article.yml +14 -14
  145. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/keywords_subject_scheme.yml +6 -6
  146. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/maremma.yml +9 -7
  147. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/missing_creator.yml +12 -12
  148. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/multiple_abstracts.yml +6 -6
  149. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/organization_author.yml +19 -19
  150. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/software.yml +4 -4
  151. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/software_w/version.yml +6 -6
  152. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/with_only_first_page.yml +13 -13
  153. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/with_pages.yml +12 -12
  154. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/climate_data.yml +6 -6
  155. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/maremma.yml +10 -8
  156. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/text.yml +4 -4
  157. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/with_data_citation.yml +14 -14
  158. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/with_pages.yml +12 -12
  159. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/dissertation.yml +17 -17
  160. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/from_schema_org.yml +158 -158
  161. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/journal_article.yml +18 -18
  162. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/maremma.yml +10 -8
  163. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/with_ORCID_ID.yml +12 -12
  164. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/with_data_citation.yml +14 -14
  165. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/Dataset_in_schema_4_0.yml +6 -6
  166. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/Text_pass-thru.yml +4 -4
  167. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/book_chapter.yml +15 -13
  168. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/from_schema_org.yml +158 -158
  169. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/interactive_resource_without_dates.yml +4 -4
  170. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/maremma.yml +12 -10
  171. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/with_ORCID_ID.yml +12 -12
  172. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/with_data_citation.yml +14 -14
  173. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/with_editor.yml +13 -13
  174. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/BlogPosting.yml +4 -4
  175. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/BlogPosting_schema_org.yml +159 -159
  176. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/Dataset.yml +6 -6
  177. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/alternate_name.yml +4 -4
  178. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/journal_article.yml +8 -8
  179. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/keywords_with_subject_scheme.yml +6 -6
  180. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/maremma.yml +9 -7
  181. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/with_pages.yml +7 -7
  182. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Another_Schema_org_JSON.yml +6 -6
  183. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Funding.yml +9 -9
  184. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Funding_OpenAIRE.yml +9 -9
  185. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Schema_org_JSON.yml +17 -17
  186. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Schema_org_JSON_Cyark.yml +33 -33
  187. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/alternate_identifiers.yml +9 -9
  188. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/data_catalog.yml +9 -9
  189. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/geo_location_box.yml +12 -12
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124
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125
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127
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128
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129
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132
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133
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136
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137
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140
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142
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144
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147
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148
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149
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151
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152
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153
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157
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158
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160
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161
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162
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166
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168
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378
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380
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381
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383
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- JF, Gerstein M: A Bayesian networks approach for predicting protein-protein
471
- interactions from genomic data. Science. 2003, 302 (5644): 449-453. 10.1126/science.1087361.</unstructured_citation>\r\n
472
- \ </citation>\r\n <citation key=\"570_CR7\">\r\n
473
- \ <journal_title>Science</journal_title>\r\n <author>I
474
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475
- \ <first_page>1555</first_page>\r\n <cYear>2004</cYear>\r\n
476
- \ <doi>10.1126/science.1099511</doi>\r\n <unstructured_citation>Lee
477
- I, Date SV, Adai AT, Marcotte EM: A probabilistic functional network of yeast
478
- genes. Science. 2004, 306 (5701): 1555-1558. 10.1126/science.1099511.</unstructured_citation>\r\n
479
- \ </citation>\r\n <citation key=\"570_CR8\">\r\n
480
- \ <journal_title>BMC Bioinformatics</journal_title>\r\n
481
- \ <author>N Lin</author>\r\n <volume>5</volume>\r\n
482
- \ <issue>1</issue>\r\n <first_page>154</first_page>\r\n
483
- \ <cYear>2004</cYear>\r\n <doi>10.1186/1471-2105-5-154</doi>\r\n
484
- \ <unstructured_citation>Lin N, Wu B, Jansen R, Gerstein
485
- M, Zhao H: Information assessment on predicting protein-protein interactions.
486
- BMC Bioinformatics. 2004, 5 (1): 154-10.1186/1471-2105-5-154.</unstructured_citation>\r\n
487
- \ </citation>\r\n <citation key=\"570_CR9\">\r\n
488
- \ <journal_title>Proc Natl Acad Sci USA</journal_title>\r\n
489
- \ <author>OG Troyanskaya</author>\r\n <volume>100</volume>\r\n
490
- \ <issue>14</issue>\r\n <first_page>8348</first_page>\r\n
491
- \ <cYear>2003</cYear>\r\n <doi>10.1073/pnas.0832373100</doi>\r\n
492
- \ <unstructured_citation>Troyanskaya OG, Dolinski K, Owen
493
- AB, Altman RB, Botstein D: A Bayesian framework for combining heterogeneous
494
- data sources for gene function prediction (in Saccharomyces cerevisiae). Proc
495
- Natl Acad Sci USA. 2003, 100 (14): 8348-8353. 10.1073/pnas.0832373100.</unstructured_citation>\r\n
496
- \ </citation>\r\n <citation key=\"570_CR10\">\r\n
497
- \ <journal_title>Trends Genet</journal_title>\r\n <author>SL
498
- Wong</author>\r\n <volume>21</volume>\r\n <issue>8</issue>\r\n
499
- \ <first_page>424</first_page>\r\n <cYear>2005</cYear>\r\n
500
- \ <doi>10.1016/j.tig.2005.06.006</doi>\r\n <unstructured_citation>Wong
501
- SL, Zhang LV, Roth FP: Discovering functional relationships: biochemistry
502
- versus genetics. Trends Genet. 2005, 21 (8): 424-427. 10.1016/j.tig.2005.06.006.</unstructured_citation>\r\n
503
- \ </citation>\r\n <citation key=\"570_CR11\">\r\n
504
- \ <journal_title>Nucleic Acids Res</journal_title>\r\n <author>M
505
- Kanehisa</author>\r\n <volume>28</volume>\r\n <issue>1</issue>\r\n
506
- \ <first_page>27</first_page>\r\n <cYear>2000</cYear>\r\n
507
- \ <doi>10.1093/nar/28.1.27</doi>\r\n <unstructured_citation>Kanehisa
508
- M, Goto S: KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res.
509
- 2000, 28 (1): 27-30. 10.1093/nar/28.1.27.</unstructured_citation>\r\n </citation>\r\n
510
- \ <citation key=\"570_CR12\">\r\n <journal_title>Bioinformatics</journal_title>\r\n
511
- \ <author>Y Yamanishi</author>\r\n <volume>20</volume>\r\n
512
- \ <issue>Suppl 1</issue>\r\n <first_page>I363</first_page>\r\n
513
- \ <cYear>2004</cYear>\r\n <doi>10.1093/bioinformatics/bth910</doi>\r\n
514
- \ <unstructured_citation>Yamanishi Y, Vert JP, Kanehisa
515
- M: Protein network inference from multiple genomic data: a supervised approach.
516
- Bioinformatics. 2004, 20 (Suppl 1): I363-I370. 10.1093/bioinformatics/bth910.</unstructured_citation>\r\n
517
- \ </citation>\r\n <citation key=\"570_CR13\">\r\n
518
- \ <unstructured_citation>GRIFn Home Page. [http://function.princeton.edu/GRIFn]</unstructured_citation>\r\n
519
- \ </citation>\r\n <citation key=\"570_CR14\">\r\n
520
- \ <journal_title>Nature</journal_title>\r\n <author>AC
521
- Gavin</author>\r\n <volume>415</volume>\r\n <issue>6868</issue>\r\n
522
- \ <first_page>141</first_page>\r\n <cYear>2002</cYear>\r\n
523
- \ <doi>10.1038/415141a</doi>\r\n <unstructured_citation>Gavin
524
- AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, Rick JM,
525
- Michon AM, Cruciat CM: Functional organization of the yeast proteome by systematic
526
- analysis of protein complexes. Nature. 2002, 415 (6868): 141-147. 10.1038/415141a.</unstructured_citation>\r\n
527
- \ </citation>\r\n <citation key=\"570_CR15\">\r\n
528
- \ <journal_title>J Mol Biol</journal_title>\r\n <author>E
529
- Sprinzak</author>\r\n <volume>327</volume>\r\n <issue>5</issue>\r\n
530
- \ <first_page>919</first_page>\r\n <cYear>2003</cYear>\r\n
531
- \ <doi>10.1016/S0022-2836(03)00239-0</doi>\r\n <unstructured_citation>Sprinzak
532
- E, Sattath S, Margalit H: How reliable are experimental protein-protein interaction
533
- data?. J Mol Biol. 2003, 327 (5): 919-923. 10.1016/S0022-2836(03)00239-0.</unstructured_citation>\r\n
534
- \ </citation>\r\n <citation key=\"570_CR16\">\r\n
535
- \ <journal_title>Nature</journal_title>\r\n <author>P
536
- Uetz</author>\r\n <volume>403</volume>\r\n <issue>6770</issue>\r\n
537
- \ <first_page>623</first_page>\r\n <cYear>2000</cYear>\r\n
538
- \ <doi>10.1038/35001009</doi>\r\n <unstructured_citation>Uetz
539
- P, Giot L, Cagney G, Mansfield TA, Judson RS, Knight JR, Lockshon D, Narayan
540
- V, Srinivasan M, Pochart P: A comprehensive analysis of protein-protein interactions
541
- in Saccharomyces cerevisiae. Nature. 2000, 403 (6770): 623-627. 10.1038/35001009.</unstructured_citation>\r\n
542
- \ </citation>\r\n <citation key=\"570_CR17\">\r\n
543
- \ <journal_title>Nature</journal_title>\r\n <author>C
544
- von Mering</author>\r\n <volume>417</volume>\r\n <issue>6887</issue>\r\n
545
- \ <first_page>399</first_page>\r\n <cYear>2002</cYear>\r\n
546
- \ <doi>10.1038/nature750</doi>\r\n <unstructured_citation>von
547
- Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, Bork P: Comparative
548
- assessment of large-scale data sets of protein-protein interactions. Nature.
549
- 2002, 417 (6887): 399-403. 10.1038/nature750.</unstructured_citation>\r\n
550
- \ </citation>\r\n <citation key=\"570_CR18\">\r\n
551
- \ <journal_title>Bioinformatics</journal_title>\r\n <author>SG
552
- Lee</author>\r\n <volume>20</volume>\r\n <issue>3</issue>\r\n
553
- \ <first_page>381</first_page>\r\n <cYear>2004</cYear>\r\n
554
- \ <doi>10.1093/bioinformatics/btg420</doi>\r\n <unstructured_citation>Lee
555
- SG, Hur JU, Kim YS: A graph-theoretic modeling on GO space for biological
556
- interpretation of gene clusters. Bioinformatics. 2004, 20 (3): 381-388. 10.1093/bioinformatics/btg420.</unstructured_citation>\r\n
557
- \ </citation>\r\n <citation key=\"570_CR19\">\r\n
558
- \ <journal_title>Nat Genet</journal_title>\r\n <author>M
559
- Ashburner</author>\r\n <volume>25</volume>\r\n <issue>1</issue>\r\n
560
- \ <first_page>25</first_page>\r\n <cYear>2000</cYear>\r\n
561
- \ <doi>10.1038/75556</doi>\r\n <unstructured_citation>Ashburner
562
- M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski
563
- K, Dwight SS, Eppig JT: Gene ontology: tool for the unification of biology.
564
- The Gene Ontology Consortium. Nat Genet. 2000, 25 (1): 25-29. 10.1038/75556.</unstructured_citation>\r\n
565
- \ </citation>\r\n <citation key=\"570_CR20\">\r\n
566
- \ <journal_title>Nucleic Acids Res</journal_title>\r\n <author>CA
567
- Ball</author>\r\n <volume>28</volume>\r\n <issue>1</issue>\r\n
568
- \ <first_page>77</first_page>\r\n <cYear>2000</cYear>\r\n
569
- \ <doi>10.1093/nar/28.1.77</doi>\r\n <unstructured_citation>Ball
570
- CA, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Kasarskis A, Scafe CR,
571
- Sherlock G, Binkley G, Jin H: Integrating functional genomic information into
572
- the Saccharomyces genome database. Nucleic Acids Res. 2000, 28 (1): 77-80.
573
- 10.1093/nar/28.1.77.</unstructured_citation>\r\n </citation>\r\n
574
- \ <citation key=\"570_CR21\">\r\n <journal_title>Nucleic
575
- Acids Res</journal_title>\r\n <author>HW Mewes</author>\r\n
576
- \ <volume>30</volume>\r\n <issue>1</issue>\r\n
577
- \ <first_page>31</first_page>\r\n <cYear>2002</cYear>\r\n
578
- \ <doi>10.1093/nar/30.1.31</doi>\r\n <unstructured_citation>Mewes
579
- HW, Frishman D, Guldener U, Mannhaupt G, Mayer K, Mokrejs M, Morgenstern B,
580
- Munsterkotter M, Rudd S, Weil B: MIPS: a database for genomes and protein
581
- sequences. Nucleic Acids Res. 2002, 30 (1): 31-34. 10.1093/nar/30.1.31.</unstructured_citation>\r\n
582
- \ </citation>\r\n <citation key=\"570_CR22\">\r\n
583
- \ <journal_title>Nucleic Acids Res</journal_title>\r\n <author>MC
584
- Costanzo</author>\r\n <volume>29</volume>\r\n <issue>1</issue>\r\n
585
- \ <first_page>75</first_page>\r\n <cYear>2001</cYear>\r\n
586
- \ <doi>10.1093/nar/29.1.75</doi>\r\n <unstructured_citation>Costanzo
587
- MC, Crawford ME, Hirschman JE, Kranz JE, Olsen P, Robertson LS, Skrzypek MS,
588
- Braun BR, Hopkins KL, Kondu P: YPD, PombePD and WormPD: model organism volumes
589
- of the BioKnowledge library, an integrated resource for protein information.
590
- Nucleic Acids Res. 2001, 29 (1): 75-79. 10.1093/nar/29.1.75.</unstructured_citation>\r\n
591
- \ </citation>\r\n <citation key=\"570_CR23\">\r\n
592
- \ <journal_title>Curr Opin Microbiol</journal_title>\r\n
593
- \ <author>R Jansen</author>\r\n <volume>7</volume>\r\n
594
- \ <issue>5</issue>\r\n <first_page>535</first_page>\r\n
595
- \ <cYear>2004</cYear>\r\n <doi>10.1016/j.mib.2004.08.012</doi>\r\n
596
- \ <unstructured_citation>Jansen R, Gerstein M: Analyzing
597
- protein function on a genomic scale: the importance of gold-standard positives
598
- and negatives for network prediction. Curr Opin Microbiol. 2004, 7 (5): 535-545.
599
- 10.1016/j.mib.2004.08.012.</unstructured_citation>\r\n </citation>\r\n
600
- \ <citation key=\"570_CR24\">\r\n <journal_title>BMC
601
- Bioinformatics</journal_title>\r\n <author>A Patil</author>\r\n
602
- \ <volume>6</volume>\r\n <issue>1</issue>\r\n
603
- \ <first_page>100</first_page>\r\n <cYear>2005</cYear>\r\n
604
- \ <doi>10.1186/1471-2105-6-100</doi>\r\n <unstructured_citation>Patil
605
- A, Nakamura H: Filtering high-throughput protein-protein interaction data
606
- using a combination of genomic features. BMC Bioinformatics. 2005, 6 (1):
607
- 100-10.1186/1471-2105-6-100.</unstructured_citation>\r\n </citation>\r\n
608
- \ <citation key=\"570_CR25\">\r\n <journal_title>Nature</journal_title>\r\n
609
- \ <author>WK Huh</author>\r\n <volume>425</volume>\r\n
610
- \ <issue>6959</issue>\r\n <first_page>686</first_page>\r\n
611
- \ <cYear>2003</cYear>\r\n <doi>10.1038/nature02026</doi>\r\n
612
- \ <unstructured_citation>Huh WK, Falvo JV, Gerke LC, Carroll
613
- AS, Howson RW, Weissman JS, O'Shea EK: Global analysis of protein localization
614
- in budding yeast. Nature. 2003, 425 (6959): 686-691. 10.1038/nature02026.</unstructured_citation>\r\n
615
- \ </citation>\r\n <citation key=\"570_CR26\">\r\n
616
- \ <journal_title>Mol Cell Proteomics</journal_title>\r\n
617
- \ <author>CM Deane</author>\r\n <volume>1</volume>\r\n
618
- \ <issue>5</issue>\r\n <first_page>349</first_page>\r\n
619
- \ <cYear>2002</cYear>\r\n <doi>10.1074/mcp.M100037-MCP200</doi>\r\n
620
- \ <unstructured_citation>Deane CM, Salwinski L, Xenarios
621
- I, Eisenberg D: Protein interactions: two methods for assessment of the reliability
622
- of high throughput observations. Mol Cell Proteomics. 2002, 1 (5): 349-356.
623
- 10.1074/mcp.M100037-MCP200.</unstructured_citation>\r\n </citation>\r\n
624
- \ <citation key=\"570_CR27\">\r\n <author>Y
625
- Qi</author>\r\n <first_page>531</first_page>\r\n <cYear>2005</cYear>\r\n
626
- \ <volume_title>Pac Symp Biocomput</volume_title>\r\n <unstructured_citation>Qi
627
- Y, Klein-Seetharaman J, Bar-Joseph Z: Random forest similarity for protein-protein
628
- interaction prediction from multiple sources. Pac Symp Biocomput. 2005, 531-542.</unstructured_citation>\r\n
629
- \ </citation>\r\n <citation key=\"570_CR28\">\r\n
630
- \ <journal_title>Curr Opin Struct Biol</journal_title>\r\n
631
- \ <author>P Bork</author>\r\n <volume>14</volume>\r\n
632
- \ <issue>3</issue>\r\n <first_page>292</first_page>\r\n
633
- \ <cYear>2004</cYear>\r\n <doi>10.1016/j.sbi.2004.05.003</doi>\r\n
634
- \ <unstructured_citation>Bork P, Jensen LJ, von Mering C,
635
- Ramani AK, Lee I, Marcotte EM: Protein interaction networks from yeast to
636
- human. Curr Opin Struct Biol. 2004, 14 (3): 292-299. 10.1016/j.sbi.2004.05.003.</unstructured_citation>\r\n
637
- \ </citation>\r\n <citation key=\"570_CR29\">\r\n
638
- \ <journal_title>Nucleic Acids Res</journal_title>\r\n <author>I
639
- Xenarios</author>\r\n <volume>28</volume>\r\n <issue>1</issue>\r\n
640
- \ <first_page>289</first_page>\r\n <cYear>2000</cYear>\r\n
641
- \ <doi>10.1093/nar/28.1.289</doi>\r\n <unstructured_citation>Xenarios
642
- I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D: DIP: the database
643
- of interacting proteins. Nucleic Acids Res. 2000, 28 (1): 289-291. 10.1093/nar/28.1.289.</unstructured_citation>\r\n
644
- \ </citation>\r\n <citation key=\"570_CR30\">\r\n
645
- \ <journal_title>Genome Biol</journal_title>\r\n <author>BJ
646
- Breitkreutz</author>\r\n <volume>4</volume>\r\n <issue>3</issue>\r\n
647
- \ <first_page>R23</first_page>\r\n <cYear>2003</cYear>\r\n
648
- \ <doi>10.1186/gb-2003-4-3-r23</doi>\r\n <unstructured_citation>Breitkreutz
649
- BJ, Stark C, Tyers M: The GRID: the General Repository for Interaction Datasets.
650
- Genome Biol. 2003, 4 (3): R23-10.1186/gb-2003-4-3-r23.</unstructured_citation>\r\n
651
- \ </citation>\r\n <citation key=\"570_CR31\">\r\n
652
- \ <doi provider=\"crossref\">10.1093/nar/gki051</doi>\r\n
653
- \ <unstructured_citation>Alfarano C, Andrade CE, Anthony
654
- K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess
655
- E: The Biomolecular Interaction Network Database and related tools 2005 update.
656
- Nucleic Acids Res. 2005, D418-424. 33 Database</unstructured_citation>\r\n
657
- \ </citation>\r\n <citation key=\"570_CR32\">\r\n
658
- \ <journal_title>Bioinformatics</journal_title>\r\n <author>PW
659
- Lord</author>\r\n <volume>19</volume>\r\n <issue>10</issue>\r\n
660
- \ <first_page>1275</first_page>\r\n <cYear>2003</cYear>\r\n
661
- \ <doi>10.1093/bioinformatics/btg153</doi>\r\n <unstructured_citation>Lord
662
- PW, Stevens RD, Brass A, Goble CA: Investigating semantic similarity measures
663
- across the Gene Ontology: the relationship between sequence and annotation.
664
- Bioinformatics. 2003, 19 (10): 1275-1283. 10.1093/bioinformatics/btg153.</unstructured_citation>\r\n
665
- \ </citation>\r\n <citation key=\"570_CR33\">\r\n
666
- \ <journal_title>BMC Bioinformatics</journal_title>\r\n
667
- \ <author>A Ben-Hur</author>\r\n <volume>7</volume>\r\n
668
- \ <issue>Suppl61</issue>\r\n <first_page>S2</first_page>\r\n
669
- \ <cYear>2005</cYear>\r\n <unstructured_citation>Ben-Hur
670
- A, Noble WS: Choosing negative examples for the prediction of protein-protein
671
- interactions. BMC Bioinformatics. 2005, 7 (Suppl61): S2-</unstructured_citation>\r\n
672
- \ </citation>\r\n <citation key=\"570_CR34\">\r\n
673
- \ <journal_title>Proc Natl Acad Sci U S A</journal_title>\r\n
674
- \ <author>T Ito</author>\r\n <volume>98</volume>\r\n
675
- \ <issue>8</issue>\r\n <first_page>4569</first_page>\r\n
676
- \ <cYear>2001</cYear>\r\n <doi>10.1073/pnas.061034498</doi>\r\n
677
- \ <unstructured_citation>Ito T, Chiba T, Ozawa R, Yoshida
678
- M, Hattori M, Sakaki Y: A comprehensive two-hybrid analysis to explore the
679
- yeast protein interactome. Proc Natl Acad Sci U S A. 2001, 98 (8): 4569-4574.
680
- 10.1073/pnas.061034498.</unstructured_citation>\r\n </citation>\r\n
681
- \ <citation key=\"570_CR35\">\r\n <journal_title>Science</journal_title>\r\n
682
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683
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684
- \ <cYear>2002</cYear>\r\n <doi>10.1126/science.1064987</doi>\r\n
685
- \ <unstructured_citation>Tong AH, Drees B, Nardelli G, Bader
686
- GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi
687
- S: A combined experimental and computational strategy to define protein interaction
688
- networks for peptide recognition modules. Science. 2002, 295 (5553): 321-324.
689
- 10.1126/science.1064987.</unstructured_citation>\r\n </citation>\r\n
690
- \ <citation key=\"570_CR36\">\r\n <journal_title>Nature</journal_title>\r\n
691
- \ <author>Y Ho</author>\r\n <volume>415</volume>\r\n
692
- \ <issue>6868</issue>\r\n <first_page>180</first_page>\r\n
693
- \ <cYear>2002</cYear>\r\n <doi>10.1038/415180a</doi>\r\n
694
- \ <unstructured_citation>Ho Y, Gruhler A, Heilbut A, Bader
695
- GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K: Systematic
696
- identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
697
- Nature. 2002, 415 (6868): 180-183. 10.1038/415180a.</unstructured_citation>\r\n
698
- \ </citation>\r\n <citation key=\"570_CR37\">\r\n
699
- \ <journal_title>Mol Biol Cell</journal_title>\r\n <author>AP
700
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701
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702
- \ <doi>10.1091/mbc.12.10.2987</doi>\r\n <unstructured_citation>Gasch
703
- AP, Huang M, Metzner S, Botstein D, Elledge SJ, Brown PO: Genomic expression
704
- responses to DNA-damaging agents and the regulatory role of the yeast ATR
705
- homolog Mec1p. Mol Biol Cell. 2001, 12 (10): 2987-3003.</unstructured_citation>\r\n
706
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707
- \ <journal_title>Mol Biol Cell</journal_title>\r\n <author>PT
708
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709
- \ <first_page>3273</first_page>\r\n <cYear>1998</cYear>\r\n
710
- \ <doi>10.1091/mbc.9.12.3273</doi>\r\n <unstructured_citation>Spellman
711
- PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein
712
- D, Futcher B: Comprehensive identification of cell cycle-regulated genes of
713
- the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell.
714
- 1998, 9 (12): 3273-3297.</unstructured_citation>\r\n </citation>\r\n
715
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