commonmeta-ruby 3.3.2 → 3.3.4

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Files changed (633) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile.lock +3 -1
  3. data/bin/commonmeta +1 -1
  4. data/commonmeta.gemspec +1 -0
  5. data/lib/commonmeta/cli.rb +10 -0
  6. data/lib/commonmeta/readers/json_feed_reader.rb +1 -1
  7. data/lib/commonmeta/utils.rb +55 -1
  8. data/lib/commonmeta/version.rb +1 -1
  9. data/lib/commonmeta.rb +1 -0
  10. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +14 -14
  11. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/crossref.yml +5 -5
  12. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/datacite.yml +5 -5
  13. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/jalc.yml +5 -5
  14. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/kisti.yml +5 -5
  15. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/medra.yml +5 -5
  16. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/not_found.yml +5 -5
  17. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/op.yml +5 -5
  18. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/crossref.yml +5 -5
  19. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +5 -5
  20. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite.yml +5 -5
  21. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/datacite_doi_http.yml +5 -5
  22. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +5 -5
  23. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/cff-converter-python.yml +9 -7
  24. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff.yml +16 -14
  25. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_cff_metadata/ruby-cff_repository_url.yml +14 -12
  26. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_codemeta_metadata/maremma.yml +10 -8
  27. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_codemeta_metadata/metadata_reports.yml +9 -7
  28. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +74 -74
  29. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +73 -73
  30. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +70 -70
  31. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/JaLC.yml +159 -159
  32. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/KISTI.yml +128 -128
  33. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/OP.yml +72 -72
  34. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/affiliation_is_space.yml +73 -73
  35. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/another_book.yml +109 -109
  36. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/another_book_chapter.yml +71 -71
  37. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/article_id_as_page_number.yml +74 -74
  38. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/author_literal.yml +82 -82
  39. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book.yml +71 -71
  40. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_chapter.yml +72 -72
  41. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_chapter_with_RDF_for_container.yml +70 -70
  42. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/book_oup.yml +69 -69
  43. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/component.yml +91 -91
  44. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dataset.yml +101 -102
  45. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dataset_usda.yml +133 -133
  46. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/date_in_future.yml +78 -78
  47. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/dissertation.yml +100 -100
  48. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/empty_given_name.yml +72 -72
  49. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/invalid_date.yml +73 -73
  50. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article.yml +72 -72
  51. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_original_language_title.yml +70 -70
  52. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with.yml +76 -514
  53. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with_RDF_for_container.yml +70 -70
  54. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_article_with_funding.yml +73 -73
  55. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/journal_issue.yml +69 -69
  56. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/mEDRA.yml +69 -69
  57. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/markup.yml +78 -78
  58. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/missing_creator.yml +73 -73
  59. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_issn.yml +72 -72
  60. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles.yml +71 -70
  61. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml +716 -716
  62. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/not_found_error.yml +63 -63
  63. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/peer_review.yml +74 -74
  64. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/posted_content.yml +71 -71
  65. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/posted_content_copernicus.yml +73 -73
  66. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/report_osti.yml +117 -117
  67. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/vor_with_url.yml +75 -75
  68. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/yet_another_book.yml +69 -69
  69. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_metadata/yet_another_book_chapter.yml +70 -70
  70. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_crossref_raw/journal_article.yml +10 -10
  71. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/dissertation.yml +9 -9
  72. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/funding_references.yml +11 -11
  73. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datacite_metadata/subject_scheme.yml +20 -20
  74. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_id.yml +6 -419
  75. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_post_uuid.yml +7 -260
  76. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_doi_prefix_for_blog/by_blog_post_uuid_specific_prefix.yml +3 -136
  77. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/by_blog_id.yml +225 -1432
  78. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/not_indexed_posts.yml +1380 -2112
  79. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/unregistered_posts.yml +6 -172
  80. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blog_post_with_non-url_id.yml +7 -7
  81. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blogger_post.yml +12 -12
  82. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_author_name_suffix.yml +8 -8
  83. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_doi.yml +7 -7
  84. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_organizational_author.yml +3 -3
  85. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_without_doi.yml +8 -8
  86. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post.yml +8 -8
  87. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/substack_post_with_broken_reference.yml +90 -176
  88. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/syldavia_gazette_post_with_references.yml +25 -25
  89. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/upstream_post_with_references.yml +61 -61
  90. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post.yml +8 -8
  91. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_references.yml +20 -20
  92. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_familyName.yml +9 -9
  93. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_name_in_display-order_with_ORCID.yml +9 -9
  94. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/name_with_affiliation_crossref.yml +14 -14
  95. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/only_familyName_and_givenName.yml +43 -36
  96. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/BlogPosting.yml +158 -158
  97. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/BlogPosting_with_new_DOI.yml +162 -162
  98. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/get_schema_org_metadata_front_matter/BlogPosting.yml +178 -180
  99. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/harvard_dataverse.yml +226 -230
  100. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/pangaea.yml +43 -36
  101. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/upstream_blog.yml +94 -94
  102. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_schema_org_metadata/zenodo.yml +14 -14
  103. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/DOI_RA_not_Crossref_or_DataCite.yml +5 -5
  104. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/unknown_DOI_prefix.yml +5 -5
  105. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/json_schema_errors/is_valid.yml +13 -13
  106. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/BlogPosting.yml +4 -4
  107. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/Dataset.yml +6 -6
  108. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/authors_with_affiliations.yml +14 -14
  109. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/climate_data.yml +6 -6
  110. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/from_schema_org.yml +159 -159
  111. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/keywords_subject_scheme.yml +6 -6
  112. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/maremma.yml +12 -10
  113. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/text.yml +4 -4
  114. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/with_data_citation.yml +14 -14
  115. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_bibtex/with_pages.yml +12 -12
  116. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/Collection_of_Jupyter_notebooks.yml +9 -9
  117. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/SoftwareSourceCode_Zenodo.yml +17 -17
  118. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/SoftwareSourceCode_also_Zenodo.yml +12 -12
  119. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_cff/ruby-cff.yml +16 -14
  120. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Dataset.yml +6 -6
  121. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article.yml +14 -14
  122. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml +19 -19
  123. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/Missing_author.yml +12 -12
  124. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/interactive_resource_without_dates.yml +4 -4
  125. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_citation/software_w/version.yml +6 -6
  126. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +4 -4
  127. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml +4 -4
  128. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/another_schema_org_from_front-matter.yml +27 -27
  129. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article.yml +4 -4
  130. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/journal_article_from_datacite.yml +4 -4
  131. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_doi.yml +8 -54
  132. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_organizational_author.yml +3 -3
  133. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_upstream_blog.yml +10 -53
  134. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_with_references.yml +62 -62
  135. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/posted_content.yml +15 -15
  136. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_another_science_blog.yml +6 -6
  137. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_front_matter.yml +29 -29
  138. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/schema_org_from_upstream_blog.yml +4 -4
  139. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/Another_dataset.yml +28 -28
  140. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/BlogPosting.yml +4 -4
  141. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/BlogPosting_schema_org.yml +158 -158
  142. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/Dataset.yml +6 -6
  143. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/container_title.yml +11 -11
  144. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/interactive_resource_without_dates.yml +4 -4
  145. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/journal_article.yml +14 -14
  146. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/keywords_subject_scheme.yml +6 -6
  147. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/maremma.yml +9 -7
  148. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/missing_creator.yml +12 -12
  149. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/multiple_abstracts.yml +6 -6
  150. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/organization_author.yml +19 -19
  151. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/software.yml +4 -4
  152. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/software_w/version.yml +6 -6
  153. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/with_only_first_page.yml +13 -13
  154. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csl/with_pages.yml +12 -12
  155. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/climate_data.yml +6 -6
  156. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/maremma.yml +10 -8
  157. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/text.yml +4 -4
  158. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/with_data_citation.yml +14 -14
  159. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_csv/with_pages.yml +12 -12
  160. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/dissertation.yml +17 -17
  161. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/from_schema_org.yml +158 -158
  162. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/journal_article.yml +18 -18
  163. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/maremma.yml +10 -8
  164. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/with_ORCID_ID.yml +12 -12
  165. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_datacite/with_data_citation.yml +14 -14
  166. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/Dataset_in_schema_4_0.yml +6 -6
  167. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/Text_pass-thru.yml +4 -4
  168. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/book_chapter.yml +15 -13
  169. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/from_schema_org.yml +158 -158
  170. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/interactive_resource_without_dates.yml +4 -4
  171. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/maremma.yml +12 -10
  172. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/with_ORCID_ID.yml +12 -12
  173. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/with_data_citation.yml +14 -14
  174. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_jats_xml/with_editor.yml +13 -13
  175. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/BlogPosting.yml +4 -4
  176. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/BlogPosting_schema_org.yml +159 -159
  177. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/Dataset.yml +6 -6
  178. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/alternate_name.yml +4 -4
  179. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/journal_article.yml +8 -8
  180. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/keywords_with_subject_scheme.yml +6 -6
  181. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/maremma.yml +9 -7
  182. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_ris/with_pages.yml +7 -7
  183. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Another_Schema_org_JSON.yml +6 -6
  184. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Funding.yml +9 -9
  185. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Funding_OpenAIRE.yml +9 -9
  186. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Schema_org_JSON.yml +17 -17
  187. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/Schema_org_JSON_Cyark.yml +33 -33
  188. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/alternate_identifiers.yml +9 -9
  189. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/data_catalog.yml +9 -9
  190. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/geo_location_box.yml +12 -12
  191. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_schema_org/interactive_resource_without_dates.yml +9 -9
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- href=\"https://blog.front-matter.io/tag/interview/\">Interview</a>\n\n <h1
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- class=\"gh-article-title\">Dryad: Interview with Jen Gibson</h1>\n\n <aside
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- class=\"gh-article-sidebar\">\n\n <div class=\"gh-author-image-list\">\n
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- \ <a class=\"gh-author-image\" href=\"/author/martin/\">\n <img
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- src=\"https://www.gravatar.com/avatar/8adea77ad740876f5cb832f92d49f08d?s&#x3D;250&amp;r&#x3D;x&amp;d&#x3D;mp\"
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- \ <a href=\"/author/martin/\">Martin Fenner</a>\n </h4>\n
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- datetime=\"2021-11-15\">Nov 15, 2021</time>\n <span class=\"gh-article-meta-sep\"></span>\n
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- \ <span class=\"gh-article-length\">4 min</span>\n </div>\n
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- \ <a class=\"gh-card-link\" href=\"https://doi.org/10.53731/rceh7pn-tzg61kj-7zv63\">https://doi.org/10.53731/rceh7pn-tzg61kj-7zv63</a>\n
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- \ alt=\"Dryad: Interview with Jen Gibson\"\n >\n <figcaption>Jennifer
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- Gibson</figcaption>\n </figure>\n </header>\n\n <section
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- class=\"gh-content gh-canvas\">\n <p>In October Jen Gibson
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- started as the new Executive Director for the Dryad Data Repository. I used
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- the opportunity to ask Jen a few questions about Dryad, challenges with data
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- sharing, and ideas about moving Dryad forward. I was particularly interested
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- in the interview as I served on the Dryad Board of Directors from 2013 to
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- 2016. In fact, one post on this blog is about a presentation I gave in 2013
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- (<a href=\"https://doi.org/10.53731/r294649-6f79289-8cw1x\">Metrics and attribution:
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- my thoughts for the panel at the ORCID-Dryad symposium on research attribution</a>).</p><h3
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- id=\"1-can-you-describe-what-dryad-is\">1. Can you describe what Dryad is?</h3><p>Dryad
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- is an open data publishing platform and community committed to the open availability
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- and routine re-use of all research data. We’re a generalist, curated data
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- repository – working with researchers across disciplines to assemble details
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- about their work and their data to increase its discoverability and use by
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- others. We’re a non-profit initiative working in partnership with other systems
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- and communities working to advance open research.</p><h3 id=\"2-are-there-data-that-should-not-be-submitted-to-dryad\">2.
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- Are there data that should not be submitted to Dryad?</h3><p>Dryad is designed
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- to support openly accessible and fully re-usable data, and publishes under
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- a Creative Commons Public Domain License (CC0). So, we’re not able to publish
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- data with incompatible licensing terms. We also don’t accept datasets that
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- contain personally identifiable human subject information or specific locations
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- for endangered species – but our team of curators will work with researchers
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- to see if the data can be made appropriate for sharing. </p><h3 id=\"3-are-there-limits-in-the-number-or-size-of-files-in-a-data-submission\">3.
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- Are there limits in the number or size of files in a data submission?</h3><p>We
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- can accept up to 300GB per dataset and thousands of files, but curators are
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- looking for the most accessible file types and downloads to support re-use.
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- So, we ask that files be small and zipped when possible. Users with files
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- larger than 300GB are asked simply to contact us to coordinate. </p><h3 id=\"4-does-dryad-also-accept-software-submissions\">4.
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- Does Dryad also accept software submissions?</h3><p>No, Dryad only publishes
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- data. So, we’ve partnered with <a href=\"https://zenodo.org\">Zenodo</a> so
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- that users can load software and other supplementary information at the same
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- time that they load data to Dryad. Software can then be made available under
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- a different, more appropriate license and be given its own citation, but is
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- also linked from the data publication at Dryad.</p><h3 id=\"5-does-a-data-submission-to-dryad-cost-money\">5.
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- Does a data submission to Dryad cost money?</h3><p>Yes. Often the cost to
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- researchers is covered or discounted through an arrangement with their institution,
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- publisher, or funder. Where there is not yet an arrangement in place, the
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- submitting researcher is asked to pay $120 – with overage fees if the data
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- is larger than 300GB. Waivers are, of course, available. Publication fees,
333
- memberships, and partnerships with institutions, publishers and funders help
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- cover our costs for data curation and long-term preservation.</p><h3 id=\"6-what-are-the-main-challenges-for-authors\">6.
335
- What are the main challenges for authors?</h3><p>There are so many challenges
336
- for researchers with respect to open sharing of data – and they’re different
337
- in every discipline. There are behaviour changes, and workflow changes and
338
- culture changes to overcome – although several disciplines have carved a path,
339
- including astronomy and ecology. I hope that the open data-sharing around
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- COVID will help inspire more people to follow suit.</p><p>Dryad helps to overcome
341
- these challenges, of course. We help first of all by helping to make it <em>possible</em>
342
- to share data properly – openly, with a CC0 license, and second by making
343
- it <em>easy</em> to share data through our friendly user interface and our
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- integrations with publishers and partners such as Zenodo. (With the terms
345
- ‘possible, easy, rewarding and normative,’ I’m invoking Brian Nosek’s <a href=\"https://www.cos.io/blog/strategy-for-culture-change\">Strategy
346
- for Culture Change</a>).</p><p>We’re helping to make data sharing <em>rewarding</em>
347
- by standardising usage metrics (through <a href=\"https://makedatacount.org/\">Make
348
- Data Count</a> – an important, community-led initiative to develop metrics
349
- for open research data assessment) and encouraging citation, though these
350
- are just a couple of the pieces needed to put data and data sharing at the
351
- centre of research assessment.</p><p>Finally, what I’m very much looking forward
352
- to doing with Dryad is supporting and building communities that share and
353
- re-use data to make this practice <em>normative</em>. Connecting people with
354
- people – and people with data – is key in nurturing and normalising the regular
355
- exchange and re-use of data. </p><h3 id=\"7-why-should-authors-submit-their-data-to-dryad\">7.
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- Why should authors submit their data to Dryad?</h3><p>Authors whose communities
357
- don’t already rely on a domain repository for data, such as WormBase or the
358
- Protein Data Bank, should publish their data with Dryad because:</p><ul><li>Our
359
- curation service increases the quality and discoverability of new data, by
360
- ensuring key descriptive information (metadata) is available alongside the
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- data itself</li><li>Our curation service increases the integrity of new data,
362
- by ensuring it’s readable and usable by other users</li><li>We put data in
363
- context, with links to publications, software, institutions, funders and more</li><li>Data
364
- published in Dryad is citable and accessible via a persistent DOI</li><li>As
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- a non-profit and open-source initiative, our values are closely aligned with
366
- the research community</li><li>It’s easy, and affordable </li></ul><h3 id=\"8-how-can-authors-give-feedback-eg-to-report-problems-or-request-features\">8.
367
- How can authors give feedback, e.g. to report problems or request features?</h3><p>We
368
- are an open source project and our work is driven by researchers' needs. Get
369
- in touch with the help desk to discuss feature needs with our product team
370
- or leave a ticket on our public <a href=\"https://github.com/CDL-Dryad/dryad-product-roadmap/projects/1\">Github
371
- product board</a>.</p><h3 id=\"9-what-did-you-do-before-starting-to-work-for-dryad\">9.
372
- What did you do before starting to work for Dryad?</h3><p>I’ve worked in open
373
- research since 2005, when I joined <a href=\"https://sparcopen.org/\">SPARC</a>
374
- – the Scholarly Publishing and Academic Resources Coalition – to work on open-access
375
- advocacy and policy efforts. Immediately before Dryad I was a founding member
376
- of the team for eLife – the open-access journal for biology and medicine and
377
- initiative from three of the largest, most prestigious, private biomedical
378
- research funders to put science publishing back in the hands of science. I’d
379
- say my main contributions so far have been in building communities (among
380
- librarians, open science advocates, students, early-career or late-stage researchers,
381
- and others), advocacy (for open research practice at different levels of practice
382
- and policy), and adoption strategies (for researchers in particular). </p><h3
383
- id=\"10-do-you-want-to-talk-about-future-plans-for-dryad\">10. Do you want
384
- to talk about future plans for Dryad?</h3><p>Absolutely. Beyond my near-term
385
- objectives for optimising operations, I expect us to be:</p><ul><li>Leveraging
386
- support from institutions and expanding our membership program.</li><li>Working
387
- with our publisher partners to attract as much data as possible.</li><li>More
388
- actively diversifying our profile – specifically reaching out to different
389
- geographic and disciplinary communities.</li><li>Expanding our roadmap for
390
- modeling data publishing into the future, building on our progress over the
391
- last couple of years.</li></ul><p>Longer term, I’m enthusiastic about the
392
- potential for pushing data to the forefront of discovery, and taking steps
393
- to facilitate re-use and extend credit. Like Make Data Count, Dryad is committed
394
- to making data a first-class citizen in research and research assessment,
395
- and I'll be really pleased if we’re able to help properly reward researchers
396
- for their data publications. We’re going to need to, to really accelerate
397
- discovery and build that open, global network for the exchange of research
398
- objects.</p>\n <div class=\"gh-license\">\n Copyright
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- © 2021 Martin Fenner. Distributed under the terms of the\n <a\n
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- \ class=\"gh-license-link\"\n href=\"https://creativecommons.org/licenses/by/4.0/legalcode\"\n
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- \ >\n Creative Commons
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- Attribution 4.0 License.\n </a>\n </div>\n
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- class=\"gh-card post\">\n <a class=\"gh-card-link\" href=\"/posts/conference-blogging-interview-with-alex-knoll/\">\n
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- \ <figure class=\"gh-card-image\">\n <img\n srcset=\"/content/images/size/w300/2022/08/knoll.jpeg
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- \ >\n </figure>\n\n <div class=\"gh-card-wrapper\">\n
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- \ <header class=\"gh-card-header\">\n <h3 class=\"gh-card-title\">Conference
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- Blogging: Interview with Alex Knoll</h3>\n </header>\n\n <div
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- class=\"gh-card-excerpt\">Blogging is a great way to report from a scientific
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- conference. This could be done either with regular blog posts written in the
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- evening or after the conference, and/or live-blogging using tools such as
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- unique perspective</div>\n\n <footer class=\"gh-card-footer\">\n
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- class=\"gh-card-date\" datetime=\"2009-10-01\">Oct 1, 2009</time>\n <script\n
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- \ </div>\n </a>\n</article> <article class=\"gh-card
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- post\">\n <a class=\"gh-card-link\" href=\"/posts/plos-article-level-metrics-interview-with-martin-fenner/\">\n
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- \ <figure class=\"gh-card-image\">\n <img\n srcset=\"/content/images/size/w300/2022/08/429781913_9524791cff_c-1.jpg
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- 2000w\"\n sizes=\"(max-width: 1200px) 100vw, 1200px\"\n
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- \ src=\"/content/images/size/w720/2022/08/429781913_9524791cff_c-1.jpg\"\n
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- \ alt=\"PLoS Article-Level Metrics: Interview with Martin
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- Fenner\"\n >\n </figure>\n\n <div class=\"gh-card-wrapper\">\n
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- \ <header class=\"gh-card-header\">\n <h3 class=\"gh-card-title\">PLoS
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- Article-Level Metrics: Interview with Martin Fenner</h3>\n </header>\n\n
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- \ <div class=\"gh-card-excerpt\">This blog occasionally
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- does interviews with people providing interesting tools for scholars. These
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- interviews have always been among my favorite blog posts. This now is obviously
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- an interview with myself, but I felt this is the best format to explain some
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- important news.\n\nStarting May 16 I will be working</div>\n\n <footer
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- class=\"gh-card-footer\">\n <span class=\"gh-card-author\">Martin
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- Fenner</span>\n <time class=\"gh-card-date\" datetime=\"2012-04-23\">Apr
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- 23, 2012</time>\n <script\n data-ghost-comment-count=\"62d42bbd41e317003df48dad\"\n
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- class=\"gh-card post\">\n <a class=\"gh-card-link\" href=\"/posts/figshare-interview-with-mark-hahnel/\">\n
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- \ <figure class=\"gh-card-image\">\n <img\n srcset=\"/content/images/size/w300/2022/08/me1.png
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- \ src=\"/content/images/size/w720/2022/08/me1.png\"\n alt=\"Figshare:
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- Interview with Mark Hahnel\"\n >\n </figure>\n\n
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- \ <div class=\"gh-card-wrapper\">\n <header class=\"gh-card-header\">\n
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- \ <h3 class=\"gh-card-title\">Figshare: Interview with Mark
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- Hahnel</h3>\n </header>\n\n <div class=\"gh-card-excerpt\">figshare
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- allows researchers to publish all of their research outputs in seconds in
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- an easily citable, sharable and discoverable manner. The service was started
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- by Mark Hahnel last year while still a PhD student. Mark joined Digital Science
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