commonmeta-ruby 3.3.16 → 3.3.18
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile.lock +12 -29
- data/bin/commonmeta +1 -1
- data/lib/commonmeta/cli.rb +7 -0
- data/lib/commonmeta/readers/json_feed_reader.rb +5 -6
- data/lib/commonmeta/utils.rb +18 -2
- data/lib/commonmeta/version.rb +1 -1
- data/spec/cli_spec.rb +1 -1
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blog_post_with_non-url_id.yml +18 -88
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blogger_post.yml +11 -50
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_author_name_suffix.yml +64 -173
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_doi.yml +13 -75
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_institutional_author.yml +15 -11
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_organizational_author.yml +15 -46
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_without_doi.yml +17 -155
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post.yml +14 -45
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post_with_anonymous_author.yml +13 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/substack_post_with_broken_reference.yml +938 -1865
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/syldavia_gazette_post_with_references.yml +128 -267
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/upstream_post_with_references.yml +570 -1279
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post.yml +12 -119
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_many_references.yml +4095 -5759
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_references.yml +24 -220
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_tracking_code_on_url.yml +13 -12
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_anonymous_author.yml +13 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_doi.yml +12 -119
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_organizational_author.yml +15 -46
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_upstream_blog.yml +13 -201
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_with_references.yml +104 -813
- data/spec/readers/json_feed_reader_spec.rb +19 -21
- data/spec/utils_spec.rb +40 -0
- data/spec/writers/crossref_xml_writer_spec.rb +4 -4
- metadata +2 -2
@@ -23,28 +23,28 @@ http_interactions:
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Date:
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string: '{"id":"https://doi.org/10.59350/hke8v-d1e66","
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string: '{"id":"4e4bf150-751f-4245-b4ca-fe69e3c3bb24","doi":"https://doi.org/10.59350/hke8v-d1e66","url":"https://svpow.com/2023/06/09/new-paper-curtice-et-al-2023-on-the-first-haplocanthosaurus-from-dry-mesa","title":"New
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paper: Curtice et al. (2023) on the first Haplocanthosaurus from Dry Mesa","summary":"Haplocanthosaurus
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tibiae and dorsal vertebrae. Curtice et al. (2023: fig. 1). Brian Curtice
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and Colin Boisvert are presenting our talk on this project at 2:00 pm MDT
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Biota (MTE14) in Salt Lake City, and the related paper is in the MTE14 volume
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in The Anatomical Record. Here’s the citation and a direct link to the paper:
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Curtice, B., Wedel, M.J., Wilhite, D.R., and Boisvert, C. 2023. New material
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of
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data-image-title=\"Haplocanthosaurus from across the Morrison – Curtice
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et al 2023 fig 1\" data-image-description=\"\" data-image-caption=\"\" data-medium-file=\"https://svpow.files.wordpress.com/2023/06/haplocanthosaurus-from-across-the-morrison-curtice-et-al-2023-fig-1.jpg?w=300\"
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class=\"wp-image-21038 size-large\" src=\"https://svpow.files.wordpress.com/2023/06/haplocanthosaurus-from-across-the-morrison-curtice-et-al-2023-fig-1.jpg?w=480\"
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alt=\"\" width=\"480\" height=\"199\" srcset=\"https://svpow.files.wordpress.com/2023/06/haplocanthosaurus-from-across-the-morrison-curtice-et-al-2023-fig-1.jpg?w=480
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768w\" sizes=\"(max-width: 480px) 100vw, 480px\" /></a><p id=\"caption-attachment-21038\"
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class=\"wp-caption-text\"><em>Haplocanthosaurus</em> tibiae and dorsal vertebrae.
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Curtice et al. (2023: fig. 1).</p></div>\n<p>Brian Curtice and Colin Boisvert
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are presenting our talk on this project at 2:00 pm MDT this afternoon, at
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the 14th Symposium on Mesozoic Terrestrial Ecosystems and Biota (MTE14) in
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Salt Lake City, and the related paper is in the MTE14 volume in The Anatomical
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Record. Here’s the citation and a direct link to the paper:</p>\n<p
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style=\"padding-left: 40px\"><a href=\"https://sauroposeidon.files.wordpress.com/2010/04/curtice-et-al-2023-haplocanthosaurus-from-dry-mesa.pdf\">Curtice,
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B., Wedel, M.J., Wilhite, D.R., and Boisvert, C. 2023. New material of <em>Haplocanthosaurus</em>
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(Hatcher 1903) from the Dry Mesa Dinosaur Quarry and a comment on sauropod
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diversity. In Hunt-Foster, R.K., Kirkland, J.I., and Loewen, M.A. (eds), 14th
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Symposium on Mesozoic Terrestrial Ecosystems and Biota. The Anatomical Record
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306(S1):79-81.</a></p>\n<p>This one is exciting to me for several reasons,
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both personal and scientific. I’ve been friends with Brian Curtice and
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Ray Wilhite since the late 90s, but I’ve never published with them before
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now. It’s nice to have Colin Boisvert on board as well — he’s
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working on his Master’s at BYU, just like Brian and Ray did back when,
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and he’s a keen observer of the sauropod scene.</p>\n<p>Turning to the
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science, the number of known <em>Haplo</em> individuals in the entire Morrison
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is small, probably fewer than a dozen, so any new <em>Haplo</em> material
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is nice to get. Also, Dry Mesa is a big, famous, productive, diverse quarry,
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and having <em>Haplo</em> in that quarry is interesting and important. </p>\n<p>But
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to me the most exciting thing about this is that Dry Mesa now has the highest
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diversity of sauropod genera of any locality in the world. At least six valid,
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impossible-to-confuse sauropod genera are known from Dry Mesa (listed alphabetically
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here; we provide specimen numbers of diagnostic elements for each genus in
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the paper):</p>\n<ol>\n<li><em>Apatosaurus</em></li>\n<li><em>Brachiosaurus</em></li>\n<li><em>Camarasaurus</em></li>\n<li><em>Diplodocus</em></li>\n<li><em>Haplocanthosaurus</em></li>\n<li><em>Supersaurus</em></li>\n</ol>\n<div
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data-shortcode=\"caption\" id=\"attachment_8007\" style=\"width: 490px\" class=\"wp-caption
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aligncenter\"><a href=\"https://svpow.files.wordpress.com/2013/03/wedel-and-taylor-2013-bifurcation-figure-7-small-diplodocus-cervical1.jpg\"><img
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loading=\"lazy\" aria-describedby=\"caption-attachment-8007\" data-attachment-id=\"8007\"
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data-permalink=\"https://svpow.com/papers-by-sv-powsketeers/wedel-and-taylor-2013-on-sauropod-neural-spine-bifurcation/wedel-and-taylor-2013-bifurcation-figure-7-small-diplodocus-cervical-2/\"
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data-orig-file=\"https://svpow.files.wordpress.com/2013/03/wedel-and-taylor-2013-bifurcation-figure-7-small-diplodocus-cervical1.jpg\"
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data-orig-size=\"2220,2089\" data-comments-opened=\"1\" data-image-meta=\"{\"aperture\":\"0\",\"credit\":\"\",\"camera\":\"\",\"caption\":\"\",\"created_timestamp\":\"0\",\"copyright\":\"\",\"focal_length\":\"0\",\"iso\":\"0\",\"shutter_speed\":\"0\",\"title\":\"\"}\"
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data-image-title=\"Wedel and Taylor 2013 bifurcation Figure 7 – small
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Diplodocus cervical\" data-image-description=\"\" data-image-caption=\"<p>Wedel
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and Taylor (2013), Figure 7. BYU 12613, a posterior cervical of Diplodocus,
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in dorsal (top), left lateral (left), and posterior (right) views. It compares
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most favourably with C14 of D. carnegii CM 84/94 (Hatcher, 1901: plate 3)
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despite being only 42% as large, with a centrum length of 270 mm compared
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to 642 mm for C14 of D. carnegii.</p>\n\" data-medium-file=\"https://svpow.files.wordpress.com/2013/03/wedel-and-taylor-2013-bifurcation-figure-7-small-diplodocus-cervical1.jpg?w=300\"
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class=\"size-large wp-image-8007\" src=\"https://svpow.files.wordpress.com/2013/03/wedel-and-taylor-2013-bifurcation-figure-7-small-diplodocus-cervical1.jpg?w=480\"
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alt=\"\" width=\"480\" height=\"452\" srcset=\"https://svpow.files.wordpress.com/2013/03/wedel-and-taylor-2013-bifurcation-figure-7-small-diplodocus-cervical1.jpg?w=480
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480w, https://svpow.files.wordpress.com/2013/03/wedel-and-taylor-2013-bifurcation-figure-7-small-diplodocus-cervical1.jpg?w=960
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768w\" sizes=\"(max-width: 480px) 100vw, 480px\" /></a><p id=\"caption-attachment-8007\"
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class=\"wp-caption-text\">BYU 12613, a posterior cervical of a diplodocid,
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in dorsal (top), left lateral (left), and posterior (right) views. The centrum
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length is 270 mm, compared to 642 mm for C14 of <em>D. carnegii</em>. Wedel
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and Taylor (2013), Figure 7.</p></div>\n<p>Alert readers may also recall BYU
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12613, a posterior cervical that Mike and I called <em>Diplodocus</em> in
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our 2013 neural spine bifurcation paper, but which may actually pertain to
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<em>Kaatedocus</em>. All the <em>Diplodocus</em> material from Dry Mesa is
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small, and I’m not at all confident that I could tell small <em>Diplodocus</em>
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vertebrae from <em>Kaatedocus</em>, so out of an abundance of caution we’re
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calling it all <em>Diplodocus</em> for the purposes of counting genera.</p>\n<div
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data-shortcode=\"caption\" id=\"attachment_13451\" style=\"width: 490px\"
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class=\"wp-caption aligncenter\"><a href=\"https://svpow.files.wordpress.com/2016/05/2005-07-29-byu-11617-barosaurus-right-lateral.jpg\"><img
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loading=\"lazy\" aria-describedby=\"caption-attachment-13451\" data-attachment-id=\"13451\"
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data-permalink=\"https://svpow.com/2016/05/17/whats-up-with-your-irregular-ventral-ridges-diplodocines/2005-07-29-byu-11617-barosaurus-right-lateral/\"
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data-orig-file=\"https://svpow.files.wordpress.com/2016/05/2005-07-29-byu-11617-barosaurus-right-lateral.jpg\"
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data-orig-size=\"2272,1704\" data-comments-opened=\"1\" data-image-meta=\"{\"aperture\":\"2.6\",\"credit\":\"\",\"camera\":\"E4500\",\"caption\":\"\",\"created_timestamp\":\"1122636630\",\"copyright\":\"\",\"focal_length\":\"7.85\",\"iso\":\"100\",\"shutter_speed\":\"0.045871559633028\",\"title\":\"\",\"orientation\":\"1\"}\"
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data-image-title=\"2005-07-29 BYU 11617 Barosaurus right lateral\" data-image-description=\"\"
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data-image-caption=\"\" data-medium-file=\"https://svpow.files.wordpress.com/2016/05/2005-07-29-byu-11617-barosaurus-right-lateral.jpg?w=300\"
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class=\"wp-image-13451 size-large\" src=\"https://svpow.files.wordpress.com/2016/05/2005-07-29-byu-11617-barosaurus-right-lateral.jpg?w=480\"
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alt=\"\" width=\"480\" height=\"360\" srcset=\"https://svpow.files.wordpress.com/2016/05/2005-07-29-byu-11617-barosaurus-right-lateral.jpg?w=480
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768w\" sizes=\"(max-width: 480px) 100vw, 480px\" /></a><p id=\"caption-attachment-13451\"
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class=\"wp-caption-text\">BYU 11617, which sure as heck looks like <em>Barosaurus</em>
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to me, with a loooong swoopy centrum, big posterolateral flanges, and prezygs
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that overhang the condyle.</p></div>\n<p>There are also vertebrae in the quarry
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that I’ve always considered to belong to <em>Barosaurus</em>, like BYU
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11617 from <a href=\"https://svpow.com/2016/05/17/whats-up-with-your-irregular-ventral-ridges-diplodocines/\">this
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post</a>. If Brian Curtice is right about BYU 9024 (<a href=\"https://svpow.com/2016/09/16/how-horrifying-was-the-neck-of-barosaurus/\">this
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monster</a>) belonging to <em>Supersaurus</em> rather than <em>Barosaurus</em>,
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then I’m no longer certain that we can distinguish <em>Supes</em> and
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<em>Baro</em> based on cervical vertebrae. So maybe those <em>Baro</em> verts
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actually belong to <em>Supersaurus</em>. But if they don’t — or
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if BYU 9024 itself belong to <em>Barosaurus</em>, as Mike and I have argued
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(in <a href=\"http://www.miketaylor.org.uk/dino/pubs/svpca2016/TaylorWedel2016-how-big-did-barosaurus-get.pdf\">our
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2016 SVPCA talk</a>, and <a href=\"https://svpow.com/2019/06/15/supersaurus-ultrasaurus-and-dystylosaurus-in-2019-part-2-what-we-found-in-utah/\">this
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post</a> and <a href=\"https://svpow.com/2019/06/16/supersaurus-ultrasaurus-and-dystylosaurus-in-2019-part-2b-the-size-of-the-byu-9024-animal/\">this
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post</a>) — then <em>Barosaurus</em> is a seventh sauropod genus from
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Dry Mesa.</p>\n<p>The high sauropod diversity at Dry Mesa is exciting for
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a couple of reasons. One, it emphasizes the ridiculous productivity of the
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Morrison paleoenvironment. Yes, there were droughts and fires and landslides
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and whatnot — at least periodically, even at Dry Mesa (Richmond and
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Morris 1998). But there was also an environment — or rather, a series
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of environments — fecund enough to support many coexisting genera of
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whale-sized herbivores. That’s part of the Morrison story, too.</p>\n<p>And
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two, this is relevant to the “problem” of Morrison sauropod diversity
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— the idea that there are just too darned many sauropods in the Morrison,
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no environment could have supported so many, and therefore Morrison sauropod
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taxonomy has to be messed up, buncha dumb paleontologists oversplitting genera
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and species because they don’t know any better. (For more on this idea,
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see Darren’s brilliant series of posts at Tetrapod Zoology; the concluding
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post, with links to all the rest, is <a href=\"https://tetzoo.com/blog/2020/5/20/stop-saying-that-there-are-too-many-sauropod-dinosaurs-part-8-the-last-part\">here</a>.)</p>\n<p>I
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put “problem” in scare quotes because I think it’s illusory.
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In addition to Dry Mesa with its six or seven sauropod genera, there are a
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handful of Morrison localities with five sauropod genera, more with four,
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and gobs with three. Not surprisingly, the diverse localities tend to be the
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big ones, which at least hints that more quarries would have more sauropods
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if they were bigger — maybe only the biggest quarries did a decent job
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of capturing the diversity of sauropods on the landscape.</p>\n<div data-shortcode=\"caption\"
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768w\" sizes=\"(max-width: 480px) 100vw, 480px\" /></a><p id=\"caption-attachment-21047\"
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class=\"wp-caption-text\"><a href=\"https://dontmesswithdinosaurs.com/?p=2397\">Brian
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Engh’s</a> assemblage of large-bodied Brushy Basin dinos for <a href=\"https://www.youtube.com/watch?v=JC3aCs5f4-I\">Jurassic
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Reimagined Part 1</a>. Coincidentally, though, if you swap in <em>Supersaurus</em>
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for <em>Barosaurus</em> — or maybe just add <em>Supersaurus</em> alongside
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<em>Barosaurus</em> — you’ll have the known sauropod diversity
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of the Dry Mesa Dinosaur Quarry.</p></div>\n<p>One you have five or six sauropod
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genera coexisting closely enough to get buried in the same hole, I think the
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“problem” of Morrison sauropod diversity goes away. The Morrison
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Formation outcrops from New Mexico to Canada, from the Oklahoma panhandle
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and the Black Hills of South Dakota to central Utah, and spans probably 7
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or 8 million years. Even four or five distinct habitats or communities across
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all that space and time (which might be unrealistically conservative —
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it could easily be several communities at a time, turning over every 2 or
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3 million years*), each with four to six sauropod species, gets the species
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count waaay up there.</p>\n<p>*But wait — doesn’t our figure up
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top show that <em>Haplocanthosaurus</em> persisted from the lower part of
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the <a href=\"https://svpow.com/2020/01/29/a-haplocanthosaurus-in-the-salt-wash/\">Salt
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Wash</a> to the upper part of the Brushy Basin? Sure, but not as the same
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species right the way through. There were probably something like half a dozen
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species of haplocanthosaurs in the Morrison — <em>H. priscus</em>, <em>H.
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delfsi</em>, the as-yet-unnamed-but-definitely-distinct Bilbey <em>Haplo </em>(Bilbey
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et al. 2000), the as-yet-unnamed-but-definitely-distinct Snowmass <em>Haplo</em>
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(Foster and Wedel 2014, Wedel et al. 2021), plus I assume a couple more when
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and if we get better material of the more fragmentary specimens. That would
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be consistent with the multiple known species of <em>Apatosaurus</em>, <em>Brontosaurus</em>,
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<em>Camarasaurus</em>, <em>Diplodocus</em>, etc. So sequential communities
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of Morrison sauropods probably had a lot of the same genera — there’s
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nearly always a <em>Cam</em> of some kind, some apatosaurine lurking around,
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etc. — but with different species across time, space, and paleoenvironmental
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conditions.</p>\n<p>I think a big part of the problem is that it’s (maybe
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too) easy to think of the Morrison Formation as a single thing — like
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most formations — and to think that we can hold all of it in our heads
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at once. But the Morrison is a monster, more comparable to a group than to
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other formations, and not really comparable to any other dinosaur-bearing
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formation in terms of extent, productivity, and likely diversity of environments
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and habitats. (For an overview of Morrison environments through time, see
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<a href=\"https://www.youtube.com/watch?v=JC3aCs5f4-I\">Jurassic Reimagined
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Part 1</a>.)</p>\n<p>So, yeah. Morrison sauropod diversity was high, and we
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just have to deal with that. Plus, hey, now we have more <em>Haplo</em> to
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play with. Happy days all around!</p>\n<h2>References</h2>\n<ul>\n<li>Bilbey,
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S.A., Hall, J.E., and Hall, D.A. 2000. Preliminary results on a new haplocanthosaurid
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sauropod dinosaur from the lower Morrison Formation of northeastern Utah.
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Journal of Vertebrate Paleontology 20(supp. to no. 3): 30A.</li>\n<li><a href=\"https://sauroposeidon.files.wordpress.com/2010/04/foster-and-wedel-2014-haplocanthosaurus-from-snowmass-colorado.pdf\">Foster,
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J.R., and Wedel, M.J. 2014. <i>Haplocanthosaurus </i>(Saurischia: Sauropoda)
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from the lower Morrison Formation (Upper Jurassic) near Snowmass, Colorado. Volumina
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Jurassica 12(2): 197–210. DOI: 10.5604/17313708 .1130144</a></li>\n<li>Richmond,
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D.R., and Morris, T.H. 1998. Stratigraphy and cataclysmic deposition of the
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Dry Mesa Dinosaur Quarry, Mesa County, Colorado. Modern Geology 22:121-143.</li>\n<li><a
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href=\"https://sauroposeidon.files.wordpress.com/2010/04/wedel-taylor-2013-neural-spine-bifurcation-in-sauropods.pdf\">Wedel,
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Mathew J., and Michael P. Taylor. 2013. Neural spine bifurcation in sauropod
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dinosaurs of the Morrison Formation: ontogenetic and phylogenetic implications. <em>Palarch’s
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Journal of Vertebrate Palaeontology</em> <strong>10(1)</strong>:1-34. ISSN
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1567-2158.</a></li>\n<li><a href=\"https://svpow.files.wordpress.com/2022/03/wedel-et-al-2021-expanded-neural-canals-in-caudal-vertebrae-of-haplocanthosaurus.pdf\">Wedel,
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Mathew; Atterholt, Jessie; Dooley, Jr., Alton C.; Farooq, Saad; Macalino,
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Jeff; Nalley, Thierra K.; Wisser, Gary; and Yasmer, John. 2021. Expanded neural
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canals in the caudal vertebrae of a specimen of <em>Haplocanthosaurus</em>.
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Academia Letters, Article 911, 10pp. DOI: 10.20935/AL911</a></li>\n</ul>\n","tags":["#MTE14","Barosaurus","cervical","conferences","diplodocids"],"language":"en","references":[{"key":"ref1","url":"https://sauroposeidon.files.wordpress.com/2010/04/foster-and-wedel-2014-haplocanthosaurus-from-snowmass-colorado.pdf"},{"key":"ref2","url":"https://sauroposeidon.files.wordpress.com/2010/04/wedel-taylor-2013-neural-spine-bifurcation-in-sauropods.pdf"},{"key":"ref3","url":"https://svpow.files.wordpress.com/2022/03/wedel-et-al-2021-expanded-neural-canals-in-caudal-vertebrae-of-haplocanthosaurus.pdf"}],"blog_id":"dkvra02","blog":{"id":"dkvra02","title":"Sauropod
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