commonmeta-ruby 3.3.16 → 3.3.18

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Files changed (33) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile.lock +12 -29
  3. data/bin/commonmeta +1 -1
  4. data/lib/commonmeta/cli.rb +7 -0
  5. data/lib/commonmeta/readers/json_feed_reader.rb +5 -6
  6. data/lib/commonmeta/utils.rb +18 -2
  7. data/lib/commonmeta/version.rb +1 -1
  8. data/spec/cli_spec.rb +1 -1
  9. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blog_post_with_non-url_id.yml +18 -88
  10. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blogger_post.yml +11 -50
  11. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_author_name_suffix.yml +64 -173
  12. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_doi.yml +13 -75
  13. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_institutional_author.yml +15 -11
  14. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_organizational_author.yml +15 -46
  15. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_without_doi.yml +17 -155
  16. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post.yml +14 -45
  17. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post_with_anonymous_author.yml +13 -16
  18. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/substack_post_with_broken_reference.yml +938 -1865
  19. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/syldavia_gazette_post_with_references.yml +128 -267
  20. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/upstream_post_with_references.yml +570 -1279
  21. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post.yml +12 -119
  22. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_many_references.yml +4095 -5759
  23. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_references.yml +24 -220
  24. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_tracking_code_on_url.yml +13 -12
  25. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_anonymous_author.yml +13 -16
  26. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_doi.yml +12 -119
  27. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_organizational_author.yml +15 -46
  28. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_upstream_blog.yml +13 -201
  29. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_with_references.yml +104 -813
  30. data/spec/readers/json_feed_reader_spec.rb +19 -21
  31. data/spec/utils_spec.rb +40 -0
  32. data/spec/writers/crossref_xml_writer_spec.rb +4 -4
  33. metadata +2 -2
data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/upstream_post_with_references.yml CHANGED
@@ -23,28 +23,28 @@ http_interactions:
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  Cache-Control:
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  - public, max-age=0, must-revalidate
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  Content-Length:
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- - '20243'
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+ - '2597'
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  Content-Type:
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  - application/json; charset=utf-8
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  Date:
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- - Sun, 18 Jun 2023 15:24:13 GMT
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+ - Mon, 10 Jul 2023 21:04:50 GMT
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  Etag:
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- - '"qdelai6znkfly"'
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+ - '"csqqekh4bt204"'
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  Server:
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  - Vercel
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  Strict-Transport-Security:
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  - max-age=63072000
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  X-Matched-Path:
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- - "/api/posts/[slug]"
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+ - "/api/posts/[[...params]]"
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  X-Vercel-Cache:
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  - MISS
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  X-Vercel-Id:
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- - fra1::iad1::r4svw-1687101853425-8b4a2a987a6e
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+ - fra1::iad1::npbdg-1689023090157-17405a0b3c12
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  Connection:
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  - close
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  body:
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- string: '{"id":"https://doi.org/10.54900/zwm7q-vet94","uuid":"954f8138-0ecd-4090-87c5-cef1297f1470","url":"https://upstream.force11.org/the-research-software-alliance-resa/","title":"The
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+ string: '{"id":"954f8138-0ecd-4090-87c5-cef1297f1470","doi":"https://doi.org/10.54900/zwm7q-vet94","url":"https://upstream.force11.org/the-research-software-alliance-resa","title":"The
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  Research Software Alliance (ReSA)","summary":"Research software is a key part
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  of most research today. As University of Manchester Professor Carole Goble
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  has said, \"software is the ubiquitous instrument of science.\" Creating and
@@ -52,200 +52,11 @@ http_interactions:
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  Community Manager, has said, \"the work of the people who develop and maintain
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  research software is often hidden and needs to be recognized.\"Studies of
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  researchers at leading UK universities [1] and of postdoctoral researchers
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- in the US...","date_published":"2023-04-18T10:36:52Z","date_modified":"2023-04-18T10:36:52Z","date_indexed":"2023-06-18T00:07:17.824084+00:00","authors":[{"url":"https://orcid.org/0000-0001-5934-7525","name":"Daniel
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- S. Katz"},{"url":null,"name":"Michelle Barker"}],"image":"https://upstream.force11.org/content/images/2023/04/resa-logo-7.png","content_html":"
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- <p>Research software is a key part of most research today. As University of
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- Manchester Professor Carole Goble has said, \"software is the ubiquitous instrument
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- of science.\" Creating and maintaining research software is a human effort,
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- and as Yanina Bellina, rOpenSci Community Manager, has said, \"the work of
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- the people who develop and maintain research software is often hidden and
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- needs to be recognized.\"</p><p>Studies of researchers at leading UK universities
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- [<a href=\"https://www.software.ac.uk/blog/2014-12-04-its-impossible-conduct-research-without-software-say-7-out-10-uk-researchers?bw\">1</a>] and
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- of postdoctoral researchers in the US [<a href=\"https://doi.org/10.6084/m9.figshare.5328442\">2</a>]
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- have found that over 90% use research software, over 65% see research software
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- as fundamental to their research, and 25-55% develop software as part of the
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- research.</p><p>Research software, being ubiquitous, is difficult to concisely
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- define. One recent attempt [<a href=\"https://doi.org/10.54900/9akm9y5-5ject5y\">3</a>]
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- says that research software:</p><figure class=\"kg-card kg-image-card kg-card-hascaption\"><img
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- src=\"https://upstream.force11.org/content/images/2023/04/rob-v2-table-6.jpg\"
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- class=\"kg-image\" alt loading=\"lazy\" width=\"1080\" height=\"608\" srcset=\"https://upstream.force11.org/content/images/size/w600/2023/04/rob-v2-table-6.jpg
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- 600w, https://upstream.force11.org/content/images/size/w1000/2023/04/rob-v2-table-6.jpg
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- 1000w, https://upstream.force11.org/content/images/2023/04/rob-v2-table-6.jpg
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- 1080w\" sizes=\"(min-width: 720px) 720px\"><figcaption>Figure from <a href=\"https://doi.org/10.54900/9akm9y5-5ject5y\">https://doi.org/10.54900/9akm9y5-5ject5y</a></figcaption></figure><p>Once
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- research software is developed, however, users can find bugs, users can want
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- new features, and the underlying hardware and software on which the software
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- is built (e.g., libraries, OS) can change. The research software needs to
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- be manually maintained in response to these issues. In other words, research
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- software is not a one-time investment, but requires ongoing maintenance.</p><p>Research
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- software sustainability can be defined as occurring when the resources (people,
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- funding, etc.) to enable maintenance are gathered and applied. </p><p>This
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- is different from challenges for publications and datasets because while research
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- software can similarly be a research result and research product, it has properties
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- that differ from papers and datasets, and needs different policies and funding
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- models.</p><h2 id=\"research-software-alliance-resa\">Research Software Alliance
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- (ReSA)</h2><p>In response to these facts, the <a href=\"http://www.researchsoft.org/\">Research
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- Software Alliance (ReSA)</a> was founded in 2019 by the <a href=\"https://ardc.edu.au/\">Australia
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- Research Data Commons (ARDC)</a>, the <a href=\"https://alliancecan.ca/en\">Digital
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- Research Alliance of Canada</a>, the <a href=\"https://www.ncsa.illinois.edu/\">National
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- Center for Supercomputing Applications (NCSA)</a>, the <a href=\"https://www.esciencecenter.nl/\">Netherlands
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- eScience Center</a>, and the <a href=\"https://www.software.ac.uk/\">Software
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- Sustainability Institute (SSI)</a> to help these organisations and other stakeholders
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- collaborate on the advancement of the research software ecosystem. </p><p>ReSA''s
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- vision is that research software and those who develop and maintain it are
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- recognised and valued as fundamental and vital to research worldwide, while
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- its mission is to advance the research software ecosystem by collaborating
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- with key influencers and decision makers.</p><p>ReSA is a fiscally-sponsored
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- project of <a href=\"https://www.codeforsociety.org/\">Code for Science &
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- Society</a>, has part time <a href=\"https://www.researchsoft.org/people/\">staff
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- members </a>who include a Director, Dr Michelle Barker, and Community Managers
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- located in Africa, Asia, Australia and Canada, and is led by a <a href=\"https://www.researchsoft.org/people/\">steering
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- committee</a> chaired by Daniel S. Katz, Chief Scientist at NCSA at the University
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- of Illinois Urbana Champaign. ReSA has received support totalling USD$663,500
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- in cash, and USD$344,000 (details are <a href=\"https://www.researchsoft.org/about-resa/\">publicly
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- available</a>) as in-kind contributions from its <a href=\"https://www.researchsoft.org/about-resa/\">sponsors</a>,
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- <a href=\"https://www.researchsoft.org/about-resa/\">Founding Members</a>,
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- and <a href=\"https://www.researchsoft.org/membership/\">Organisational Members</a>.</p><h2
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- id=\"activities\">Activities</h2><p>ReSA accomplishes work primarily through
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- forums and task forces. </p><h3 id=\"funders-forum\"><a href=\"https://www.researchsoft.org/funders-forum/\">Funders
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- Forum</a></h3><p>The ReSA Funders Forum, a collaboration of 30+ research software
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- funding organisations, started in 2022. The organisations represented are
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- currently about 2/3 government, 1/4 philanthropic, and 1/12 industry. Geographically,
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- 41% are in Europe, 34% in North America, 17% in Australasia, and 4% each in
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- African and South America.</p><p>The Funders Forum provides a formal mechanism
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- for funders to share funding practices, address research software community
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- challenges, facilitate networks and collaboration, and consider how to achieve
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- long-term sustainability for research software. It meets monthly, with each
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- meeting repeating twice in a day to allow those in different time zones to
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- participate each time, and shifting in time from month to month to allow different
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- sets of participants to form each time. Each meeting includes short presentations
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- from funders on their new activities, and a discussion topic that is either
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- led by ReSA or by a funder, such as on diversity, equity, and inclusion in
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- research software, open source program offices, collaboration mechanisms,
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- and landscape analysis. The Funder Forums also has working groups in which
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- more focused activities can occur, such as planning for a multi-organisational
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- funding call and defining policies around FAIR for research software.</p><p>Discussions
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- in the ReSA steering committee and the funders forum led ReSA and the Netherlands
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- eScience Center to co-convene the “<a href=\"https://future-of-research-software.org/\">International
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- Funders Workshop: The Future of Research Software</a>” in Amsterdam in November
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- 2022, with representation from 45 funding organisations (those who provide
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- monetary and/or in-kind support to research software and/or the people who
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- develop and maintain it). </p><figure class=\"kg-card kg-image-card kg-card-hascaption\"><img
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- src=\"https://upstream.force11.org/content/images/2023/04/52502576946_04a37f7888_k.jpg\"
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- class=\"kg-image\" alt loading=\"lazy\" width=\"2000\" height=\"1334\" srcset=\"https://upstream.force11.org/content/images/size/w600/2023/04/52502576946_04a37f7888_k.jpg
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- 600w, https://upstream.force11.org/content/images/size/w1000/2023/04/52502576946_04a37f7888_k.jpg
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- 1000w, https://upstream.force11.org/content/images/size/w1600/2023/04/52502576946_04a37f7888_k.jpg
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- 1600w, https://upstream.force11.org/content/images/2023/04/52502576946_04a37f7888_k.jpg
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- 2048w\" sizes=\"(min-width: 720px) 720px\"><figcaption><a href=\"https://www.flickr.com/photos/esciencecenter/52502576946/in/album-72177720303712317/&sa=D&source=docs&ust=1681327121704634&usg=AOvVaw0eLOLV0UmKvACkvx-vuQCj\">Photo
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- via Flickr</a>. Credit: <a href=\"https://https://anneliesverhelst.com/&sa=D&source=docs&ust=1681327121686238&usg=AOvVaw29udzgf41EP21WHifLfeUF\">Annelies
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- Verhelst</a>.</figcaption></figure><p>In this workshop, attendees discussed
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- a draft of the Amsterdam Declaration on Funding Research Software Sustainability
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- [<a href=\"https://doi.org/10.5281/zenodo.7330541\">4</a>], which continues
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- to be <a href=\"https://adore.software/\">open for consultation</a>. </p><figure
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- class=\"kg-card kg-image-card kg-card-hascaption\"><img src=\"https://upstream.force11.org/content/images/2023/04/52502848059_61f6ab1780_k.jpg\"
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- class=\"kg-image\" alt loading=\"lazy\" width=\"2000\" height=\"1331\" srcset=\"https://upstream.force11.org/content/images/size/w600/2023/04/52502848059_61f6ab1780_k.jpg
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- 600w, https://upstream.force11.org/content/images/size/w1000/2023/04/52502848059_61f6ab1780_k.jpg
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- 1000w, https://upstream.force11.org/content/images/size/w1600/2023/04/52502848059_61f6ab1780_k.jpg
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- 1600w, https://upstream.force11.org/content/images/2023/04/52502848059_61f6ab1780_k.jpg
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- 2048w\" sizes=\"(min-width: 720px) 720px\"><figcaption><a href=\"https://www.flickr.com/photos/esciencecenter/52502848059/in/album-72177720303712317/\">Photo
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- via Flickr</a>. Credit: <a href=\"https://anneliesverhelst.com/&sa=D&source=docs&ust=1681327121686238&usg=AOvVaw29udzgf41EP21WHifLfeUF\">Annelies
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- Verhelst</a>.</figcaption></figure><h3 id=\"community-forum\"><a href=\"https://www.researchsoft.org/events/2022-06/\">Community
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- Forum</a></h3><p>ReSA hosts an occasional online community forum for the global
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- research software community, as an opportunity for participants to meet and
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- share information. Each call features a short talk and follow-up discussion,
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- with the aim of facilitating community consideration about what’s needed next
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- to address particular issues. The Community Forum is open to everyone. Meetings
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- occur at alternating times to maximise attendance by participants in different
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- time zones. Meeting topics have included:</p><ul><li>Outcomes of Vive la différence
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- - research software engineers [<a href=\"https://doi.org/10.5281/zenodo.6859709\">5</a>],
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- a workshop that considered how to reframe research software engineering to
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- place diversity, equity and inclusion as a central organising principle</li><li>The
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- Research Software Roadmap</li><li>Aligning publisher policies for sharing
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- code</li><li>The Research Software Community in the Global South [<a href=\"https://doi.org/10.5281/zenodo.7179892\">6</a>]</li><li><a
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- href=\"https://future-of-research-software.org/\">The International Funders
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- Workshop</a></li></ul><h3 id=\"task-forces\"><a href=\"https://www.researchsoft.org/taskforces/\">Task
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- Forces</a></h3><ul><li>Evidence for the importance of research software (completed,
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- 2020): identified and analysed resources [<a href=\"https://doi.org/10.5281/zenodo.3884311\">7</a>]
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- that demonstrate the importance of research software to research outcomes,
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- to provide information for sharing with key influencers.</li><li>Software
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- sections of RDA COVID-19 Guidelines and Recommendations for policy makers,
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- funders and the research community (completed, 2020) [<a href=\"https://doi.org/10.15497/RDA00052\">8</a>]:
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- helping COVID-19 stakeholders follow best practices to maximise the efficiency
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- of their work, and to act as a blueprint for future emergencies.</li><li>FAIR
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- for research software (completed, 2022): Jointly with FORCE11 and RDA, developed
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- the FAIR for research software (FAIR4RS) principles [<a href=\"https://doi.org/10.15497/RDA00068\">9</a>]</li><li>FAIR
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- 4 Research Software Roadmap (completed, 2022) [<a href=\"https://doi.org/10.5281/zenodo.6239373\">10</a>]:
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- Identified key stakeholders in areas arising from the application of the FAIR
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- principles to research software, to guide strategic planning and investment.
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- Consultation with key stakeholders enabled mapping of existing projects that
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- apply some of the elements of the FAIR principles to research software into
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- a longer-term framework to improve strategic alignment and potential collaborators/leads
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- for parts of the Roadmap.</li><li>Software landscape analysis (completed,
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- 2022): Mapping the international research software community landscape</li><li>Initial
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- mapping (2020) [<a href=\"https://doi.org/10.5281/zenodo.3699950\">11</a>]</li><li>Expanded
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- mapping of the Global South (2022) [<a href=\"https://doi.org/10.5281/zenodo.7179892\">6</a>]</li><li>Code
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- availability (active): Jointly with FORCE11, working towards greater alignment
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- on policy and other related actions for code (the code associated with the
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- findings of an article) being made available alongside (or prior to) the publication
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- of the article.</li><li><a href=\"https://www.researchsoft.org/funding-opportunities/\">Database
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- of research funding software opportunities</a> (active): maintaining, adding
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- to, and analysing the database to better understand opportunities and their
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- characteristics.</li><li>Research institution policies to support research
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- software (starting): is building a <a href=\"https://docs.google.com/spreadsheets/d/1YgXG1eSrby8e5wzqYOiOZW6KmJtR-wdBTrjr1_aMtF4/edit#gid=0\">collection
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- of institutional policies</a> that support research software and the people
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- who develop and maintain it, and work to better share them with interested
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- stakeholders.</li></ul><p>In addition, ReSA participates in ad hoc activities
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- that support its mission, such as sharing diversity, equity, and inclusion
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- best practices at the 2022 Vive la difference - research software engineers
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- hybrid workshop [<a href=\"https://doi.org/10.5281/zenodo.6859709\">5</a>].</p><figure
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- class=\"kg-card kg-image-card\"><img src=\"https://upstream.force11.org/content/images/2023/04/s22004-lcp-vive-la-difference-04---623c6b3946587.png\"
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- class=\"kg-image\" alt loading=\"lazy\" width=\"2000\" height=\"2828\" srcset=\"https://upstream.force11.org/content/images/size/w600/2023/04/s22004-lcp-vive-la-difference-04---623c6b3946587.png
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- 600w, https://upstream.force11.org/content/images/size/w1000/2023/04/s22004-lcp-vive-la-difference-04---623c6b3946587.png
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- 1000w, https://upstream.force11.org/content/images/size/w1600/2023/04/s22004-lcp-vive-la-difference-04---623c6b3946587.png
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- 1600w, https://upstream.force11.org/content/images/2023/04/s22004-lcp-vive-la-difference-04---623c6b3946587.png
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- 2381w\" sizes=\"(min-width: 720px) 720px\"></figure><h2 id=\"participate\">Participate</h2><p>ReSA
206
- provides freely available <a href=\"https://www.researchsoft.org/resa-resources/\">resources</a>
207
- that anyone can use to raise awareness of the importance of research software
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- and a <a href=\"https://www.researchsoft.org/funding-opportunities/\">database</a>
209
- or research software funding opportunities. </p><p>Anyone  can sign up to
210
- receive updates on ReSA through its regular <a href=\"https://www.researchsoft.org/news/\">newsletter</a>,
211
- provide information on <a href=\"https://docs.google.com/forms/d/e/1FAIpQLSdeZrx0kXAhD4XfpDrQ8Dmg4qJTRZWboMd-zvgjjtgBs1I68g/viewform\">new
212
- funding calls</a> to our <a href=\"https://www.researchsoft.org/funding-opportunities/\">database</a>,
213
- join <a href=\"https://www.researchsoft.org/taskforces/\">task forces</a>
214
- focused on specific activities, and join the ReSA <a href=\"http://researchsoft.slack.com\">Slack</a>
215
- to share what is happening in their community.</p><p>Anyone who represents
216
- a funding organisation and wants to interact with other funders, can join
217
- the (free) <a href=\"https://www.researchsoft.org/funders-forum/\">Research
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- Software Funders Forum</a>.</p><p>Finally, ReSA is always looking for organisations
219
- who want to become recognised as <a href=\"https://www.researchsoft.org/membership/\">organisational
220
- members</a> in order to financially support its work.</p><h2 id=\"references\">References</h2><ol><li>It’s
221
- impossible to conduct research without software, say 7 out of 10 UK researchers.
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- Accessed April 13, 2023. <a href=\"https://www.software.ac.uk/blog/2014-12-04-its-impossible-conduct-research-without-software-say-7-out-10-uk-researchers\">https://www.software.ac.uk/blog/2014-12-04-its-impossible-conduct-research-without-software-say-7-out-10-uk-researchers</a></li><li>Nangia
223
- U, Katz DS. Track 1 Paper: Surveying the U.S. National Postdoctoral Association
224
- Regarding Software Use and Training in Research. Published online August 30,
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- 2017. doi:<a href=\"https://doi.org/10.6084/m9.figshare.5328442.v3\">10.6084/m9.figshare.5328442.v3</a></li><li>Nieuwpoort
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- R van, Katz DS. Defining the roles of research software. <em>Upstream</em>.
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- Published online March 14, 2023. doi:<a href=\"https://doi.org/10.54900/9akm9y5-5ject5y\">10.54900/9akm9y5-5ject5y</a></li><li>Barker
228
- M, Hong NPC, Eijnatten J van, Katz DS. Amsterdam Declaration on Funding Research
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- Software Sustainability. Published online March 16, 2023. doi:<a href=\"https://doi.org/10.5281/zenodo.7740084\">10.5281/zenodo.7740084</a></li><li>Barker
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- M, Leung MA, Martinez PA, et al. <em>Report on Vive La Différence - Research
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