commonmeta-ruby 3.2.3 → 3.2.4

data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/json_feed_url/all_posts.yml

@@ -0,0 +1,221 @@
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+        Communication and Education","reference-count":26,"publisher":"Cold Spring
+        Harbor Laboratory","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"accepted":{"date-parts":[[2017,10,9]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>This
+        article presents a practical roadmap for scholarly data repositories to implement
+        data citation in accordance with the Joint Declaration of Data Citation Principles,
+        a synopsis and harmonization of the recommendations of major science policy
+        bodies. The roadmap was developed by the Repositories Expert Group, as part
+        of the Data Citation Implementation Pilot (DCIP) project, an initiative of
+        FORCE11.org and the NIH BioCADDIE (<jats:ext-link xmlns:xlink=\"http:\/\/www.w3.org\/1999\/xlink\"
+        ext-link-type=\"uri\" xlink:href=\"https:\/\/biocaddie.org\">https:\/\/biocaddie.org<\/jats:ext-link>)
+        program. The roadmap makes 11 specific recommendations, grouped into three
+        phases of implementation: a) required steps needed to support the Joint Declaration
+        of Data Citation Principles, b) recommended steps that facilitate article\/data
+        publication workflows, and c) optional steps that further improve data citation
+        support provided by data repositories.<\/jats:p>","DOI":"10.1101\/097196","type":"posted-content","created":{"date-parts":[[2016,12,29]],"date-time":"2016-12-29T06:10:15Z","timestamp":1482991815000},"source":"Crossref","is-referenced-by-count":15,"title":["A
+        Data Citation Roadmap for Scholarly Data Repositories"],"prefix":"10.1101","author":[{"ORCID":"http:\/\/orcid.org\/0000-0003-1419-2405","authenticated-orcid":false,"given":"Martin","family":"Fenner","sequence":"first","affiliation":[]},{"ORCID":"http:\/\/orcid.org\/0000-0003-1304-1939","authenticated-orcid":false,"given":"Merc\u00e8","family":"Crosas","sequence":"additional","affiliation":[]},{"ORCID":"http:\/\/orcid.org\/0000-0001-5212-7052","authenticated-orcid":false,"given":"Jeffrey","family":"Grethe","sequence":"additional","affiliation":[]},{"ORCID":"http:\/\/orcid.org\/0000-0002-9377-0797","authenticated-orcid":false,"given":"David","family":"Kennedy","sequence":"additional","affiliation":[]},{"ORCID":"http:\/\/orcid.org\/0000-0001-8479-0262","authenticated-orcid":false,"given":"Henning","family":"Hermjakob","sequence":"additional","affiliation":[]},{"ORCID":"http:\/\/orcid.org\/0000-0001-9853-5668","authenticated-orcid":false,"given":"Philippe","family":"Rocca-Serra","sequence":"additional","affiliation":[]},{"ORCID":"http:\/\/orcid.org\/0000-0002-2188-2570","authenticated-orcid":false,"given":"Gustavo","family":"Durand","sequence":"additional","affiliation":[]},{"ORCID":"http:\/\/orcid.org\/0000-0002-1731-5346","authenticated-orcid":false,"given":"Robin","family":"Berjon","sequence":"additional","affiliation":[]},{"ORCID":"http:\/\/orcid.org\/0000-0001-8249-7388","authenticated-orcid":false,"given":"Sebastian","family":"Karcher","sequence":"additional","affiliation":[]},{"ORCID":"http:\/\/orcid.org\/0000-0002-8406-3871","authenticated-orcid":false,"given":"Maryann","family":"Martone","sequence":"additional","affiliation":[]},{"ORCID":"http:\/\/orcid.org\/0000-0003-4060-7360","authenticated-orcid":false,"given":"Timothy","family":"Clark","sequence":"additional","affiliation":[]}],"member":"246","reference":[{"issue":"3","key":"2019071613381284000_097196v2.1","first-page":"43","article-title":"An
+        introduction to the joint principles for data citation","volume":"41","year":"2015","journal-title":"Bulletin
+        of the American \\ldots"},{"key":"2019071613381284000_097196v2.2","unstructured":"Altman,
+        M. , & Crosas, M. (2013). The Evolution of Data Citation: From Principles
+        to Implementation. IASSIST Quarterly. Retrieved from http:\/\/scholar.harvard.edu\/mercecrosas\/publications\/evolution-data-citation-principles-implementation"},{"key":"2019071613381284000_097196v2.3","unstructured":"BioSchemas.
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+        Task Group on Data Citation Standards and Practice. (2013). Out of Cite, Out
+        of Mind: The Current State of Practice, Policy, and Technology for the Citation
+        of Data. Data Science Journal, 12(0). https:\/\/doi.org\/10.2481\/dsj.OSOM13-043","DOI":"10.2481\/dsj.OSOM13-043"},{"key":"2019071613381284000_097196v2.5","unstructured":"Data
+        Citation Synthesis Group. (2014). Data Citation Synthesis Group. (2014). Joint
+        Declaration of Data Citation Principles. Force11. https:\/\/doi.org\/10.25490\/a97f-egyk"},{"key":"2019071613381284000_097196v2.6","unstructured":"Data
+        Citations: A Primer. (2016). Retrieved December 22, 2016, from http:\/\/force11.github.io\/data-citation-primer\/"},{"key":"2019071613381284000_097196v2.7","unstructured":"DataCite
+        Metadata Working. (2016). DataCite Metadata Schema for the Publication and
+        Citation of Research Data v4.0. DataCite. Retrieved from http:\/\/search.datacite.org\/works\/10.5438\/0013"},{"key":"2019071613381284000_097196v2.8","unstructured":"DataCite
+        Search. (2016). Retrieved December 22, 2016, from https:\/\/search.datacite.org\/"},{"key":"2019071613381284000_097196v2.9","unstructured":"DataMed
+        | bioCADDIE DDI. (2016). Retrieved December 22, 2016, from https:\/\/datamed.org\/"},{"key":"2019071613381284000_097196v2.10","unstructured":"Dataset
+        - schema.org. (2016). Retrieved December 12, 2016, from https:\/\/schema.org\/Dataset"},{"key":"2019071613381284000_097196v2.11","unstructured":"Dublin
+        Core Metadata Element Set, Version 1.1. (2012). Retrieved December 22, 2016,
+        from http:\/\/dublincore.org\/documents\/2012\/06\/14\/dces\/"},{"key":"2019071613381284000_097196v2.12","unstructured":"ELIXIR
+        Data for life. (2016). Retrieved December 22, 2016, from https:\/\/www.elixir-europe.org\/"},{"key":"2019071613381284000_097196v2.13","unstructured":"Hammond,
+        T. , Hannay, T. , & Lund, B. (2004). RDF Site Summary 1.0 Modules: PRISM."},{"key":"2019071613381284000_097196v2.14","unstructured":"Publishing
+        Requirements for Industry Standard Metadata (PRISM). Retrieved from http:\/\/purl.org\/rss\/1.0\/modules\/prism\/"},{"key":"2019071613381284000_097196v2.15","doi-asserted-by":"crossref","unstructured":"Honor,
+        L. B. , Haselgrove, C. , Frazier, J. A. , & Kennedy, D. N. (2016). Data Citation
+        in Neuroimaging: Proposed Best Practices for Data Identification and Attribution.
+        Frontiers in Neuroinformatics, 10. https:\/\/doi.org\/10.3389\/fninf.2016.00034","DOI":"10.3389\/fninf.2016.00034"},{"key":"2019071613381284000_097196v2.16","unstructured":"King,
+        Gary , & Altman, Micah . (2007). A Proposed Standard for the Scholarly Citation
+        of Quantitative Data. https:\/\/doi.org\/10.1045\/march2007-altman"},{"key":"2019071613381284000_097196v2.17","doi-asserted-by":"publisher","DOI":"10.15252\/msb.20156658"},{"key":"2019071613381284000_097196v2.18","unstructured":"Prefix
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+        A. , Gonzalez-Beltran, A. , & Rocca-Serra, P. (2016). DATS, the data tag suite
+        to enable discoverability of datasets. Scientific Data 4, Article number:
+        170059 (2017) https:\/\/doi.org\/10.1038\/sdata.2017.59","DOI":"10.1038\/sdata.2017.59"},{"key":"2019071613381284000_097196v2.21","doi-asserted-by":"crossref","first-page":"e86","DOI":"10.7717\/peerj-cs.86","article-title":"Software
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+        Science"},{"key":"2019071613381284000_097196v2.22","doi-asserted-by":"crossref","first-page":"e1","DOI":"10.7717\/peerj-cs.1","article-title":"Achieving
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+        Computer Science"},{"key":"2019071613381284000_097196v2.23","doi-asserted-by":"publisher","DOI":"10.1126\/science.aah6168"},{"key":"2019071613381284000_097196v2.24","unstructured":"Treloar,
+        A. (2011). Den Haag Persistent Object Identifier \u2013 Linked Open Data Manifesto.
+        Zenodo. https:\/\/doi.org\/10.5281\/zenodo.55666"},{"key":"2019071613381284000_097196v2.25","unstructured":"Uhlir,
+        P. E. (Ed.). (2012). For Attribution: Developing Data Attribution and Citation
+        Practices and Standards: Summary of an International Workshop. Retrieved from
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+        de Sompel, H. , & Nelson, M. L. (2015). Reminiscing About 15 Years of Interoperability
+        Efforts. D-Lib Magazine, 21(11\/12). https:\/\/doi.org\/10.1045\/november2015-vandesompel","DOI":"10.1045\/november2015-vandesompel"}],"container-title":[],"original-title":[],"link":[{"URL":"https:\/\/syndication.highwire.org\/content\/doi\/10.1101\/097196","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2020,1,18]],"date-time":"2020-01-18T02:53:57Z","timestamp":1579316037000},"score":1,"resource":{"primary":{"URL":"http:\/\/biorxiv.org\/lookup\/doi\/10.1101\/097196"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,12,28]]},"references-count":26,"URL":"http:\/\/dx.doi.org\/10.1101\/097196","relation":{"is-preprint-of":[{"id-type":"doi","id":"10.1038\/s41597-019-0031-8","asserted-by":"subject"}]},"published":{"date-parts":[[2016,12,28]]},"subtype":"preprint"}}'
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data/spec/readers/json_feed_reader_spec.rb

@@ -7,7 +7,7 @@ describe Commonmeta::Metadata, vcr: true do
 
   context 'get json_feed_item metadata' do
     it 'blogger post' do
-      input = 'https://rogue-scholar.org/api/posts/1jgo59el'
+      input = 'https://rogue-scholar.org/api/posts/f3629c86-06e0-42c0-844a-266b03a91ef1'
       subject = described_class.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq('https://iphylo.blogspot.com/2023/05/ten-years-and-million-links.html')
@@ -27,7 +27,7 @@ describe Commonmeta::Metadata, vcr: true do
     end
 
     it 'ghost post with doi' do
-      input = 'https://rogue-scholar.org/api/posts/1jgo8yel'
+      input = 'https://rogue-scholar.org/api/posts/5bb66e92-5cb9-4659-8aca-20e486b695c9'
       subject = described_class.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq('https://doi.org/10.53731/4nwxn-frt36')
@@ -46,11 +46,31 @@ describe Commonmeta::Metadata, vcr: true do
       expect(subject.container).to eq("identifier"=>"https://blog.front-matter.io/", "identifierType"=>"URL", "title"=>"Front Matter", "type"=>"Periodical")
     end
 
+    it 'ghost post without doi' do
+      input = 'https://rogue-scholar.org/api/posts/c3095752-2af0-40a4-a229-3ceb7424bce2'
+      subject = described_class.new(input: input)
+      expect(subject.valid?).to be true
+      expect(subject.id).to eq('https://www.ideasurg.pub/residency-visual-abstract')
+      expect(subject.url).to eq('https://www.ideasurg.pub/residency-visual-abstract')
+      expect(subject.type).to eq('Article')
+      expect(subject.creators.length).to eq(1)
+      expect(subject.creators.first).to eq("familyName"=>"Sathe", "givenName"=>"Tejas S.", "type"=>"Person")
+      expect(subject.titles).to eq([{"title"=>"The Residency Visual Abstract"}])
+      expect(subject.license).to eq('id' => 'CC-BY-4.0',
+                                    'url' => 'https://creativecommons.org/licenses/by/4.0/legalcode')
+      expect(subject.date).to eq('published' => '2023-04-08')
+      expect(subject.descriptions).to eq([{"description"=>"A graphical, user-friendly tool for programs to highlight important data to prospective applicants", "descriptionType"=>"Abstract"}])
+      expect(subject.publisher).to eq('name' => 'I.D.E.A.S.')
+      expect(subject.subjects).to be_nil
+      expect(subject.language).to eq('en')
+      expect(subject.container).to eq("identifier"=>"https://www.ideasurg.pub/", "identifierType"=>"URL", "title"=>"I.D.E.A.S.", "type"=>"Periodical")
+    end
+
     it 'wordpress post' do
-      input = 'https://rogue-scholar.org/api/posts/zkevlyd3'
+      input = 'https://rogue-scholar.org/api/posts/1c578558-1324-4493-b8af-84c49eabc52f'
       subject = described_class.new(input: input)
       expect(subject.valid?).to be true
-      expect(subject.id).to eq('https://wisspub.net/2023/05/23/eu-mitgliedstaaten-betonen-die-rolle-von-wissenschaftsgeleiteten-open-access-modellen-jenseits-von-apcs')
+      expect(subject.id).to eq('https://doi.org/10.59350/kz04m-s8z58')
       expect(subject.url).to eq('https://wisspub.net/2023/05/23/eu-mitgliedstaaten-betonen-die-rolle-von-wissenschaftsgeleiteten-open-access-modellen-jenseits-von-apcs')
       expect(subject.type).to eq('Article')
       expect(subject.creators.length).to eq(1)
@@ -65,9 +85,9 @@ describe Commonmeta::Metadata, vcr: true do
       expect(subject.language).to eq('de')
       expect(subject.container).to eq("identifier"=>"https://wisspub.net/", "identifierType"=>"URL", "title"=>"wisspub.net", "type"=>"Periodical")
     end
-    
+
     it 'jekyll post' do
-      input = 'https://rogue-scholar.org/api/posts/1jdkwod5'
+      input = 'https://rogue-scholar.org/api/posts/efdacb04-bcec-49d7-b689-ab3eab0634bf'
       subject = described_class.new(input: input)
       puts subject.errors
       expect(subject.valid?).to be true
@@ -85,7 +105,7 @@ describe Commonmeta::Metadata, vcr: true do
       expect(subject.subjects).to be_nil
       expect(subject.language).to eq('en')
       expect(subject.container).to eq("identifier"=>"https://citationstyles.org/", "identifierType"=>"URL", "title"=>"Citation Style Language", "type"=>"Periodical")
-    end 
+    end
   end
 
   context 'get json_feed' do
@@ -101,10 +121,15 @@ describe Commonmeta::Metadata, vcr: true do
       expect(response).to be_nil
     end
 
-    it 'citation style language' do
-      id = 'prmb582'
+    it 'behind the science' do
+      id = '468ap65'
       response = subject.get_json_feed(id)
-      expect(response).to eq("1jdkoe52")
+      expect(response).to eq("84651758-f820-4e18-ae5f-4483ff4f4e92")
+    end
+
+    it 'all posts' do
+      response = subject.get_json_feed
+      expect(response).to eq("c801dbdf-6bde-4de4-9455-2ba21c11d4c6")
     end
   end
 end

data/spec/utils_spec.rb

@@ -671,5 +671,10 @@ describe Commonmeta::Metadata, vcr: true do
       response = subject.json_feed_url(id)
       expect(response).to eq("https://rogue-scholar.org/api/blogs/f0m0e38")
     end
+
+    it 'all posts' do
+      response = subject.json_feed_url
+      expect(response).to eq("https://rogue-scholar.org/api/posts")
+    end
   end
 end

data/spec/writers/citation_writer_spec.rb

@@ -37,7 +37,7 @@ describe Commonmeta::Metadata, vcr: true do
       subject = described_class.new(input: input, from: 'datacite')
       expect(subject.style).to eq('apa')
       expect(subject.locale).to eq('en-US')
-      expect(subject.citation).to eq('Lab For Exosphere And Near Space Environment Studies. (2019). <i>lenses-lab/LYAO_RT-2018JA026426: Original Release</i> (Version 1.0.0) [Computer software]. Zenodo. https://doi.org/10.5281/zenodo.2598836')
+      expect(subject.citation).to eq('Exosphere, L. F. (2019). <i>lenses-lab/LYAO_RT-2018JA026426: Original Release</i> (Version 1.0.0) [Computer software]. Zenodo. https://doi.org/10.5281/zenodo.2598836')
     end
 
     it 'interactive resource without dates' do

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: commonmeta-ruby
 version: !ruby/object:Gem::Version
-  version: 3.2.3
+  version: 3.2.4
 platform: ruby
 authors:
 - Martin Fenner
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2023-06-04 00:00:00.000000000 Z
+date: 2023-06-05 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: activesupport
@@ -1151,6 +1151,8 @@ files:
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datetime_from_time/nil.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datetime_from_time/past.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_datetime_from_time/present.yml
+- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/all_posts.yml
+- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/behind_the_science.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/citation_style_language.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/citation_style_language_blog.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/front-matter_blog.yml
@@ -1158,21 +1160,9 @@ files:
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/upstream_blog.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blogger_post.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_doi.yml
+- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_without_doi.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_metadata/blogger_post.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_metadata/ghost_post_with_doi.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_metadata/jekyll_post.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_metadata/wordpress_post.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_item_metadata/blogger_post.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_item_metadata/ghost_post.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_item_metadata/ghost_post_with_doi.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_item_metadata/jekyll_post.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_item_metadata/wordpress_post.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_post_metadata/blogger_post.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_post_metadata/ghost_post_with_doi.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_post_metadata/jekyll_post.yml
-- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_post_metadata/wordpress_post.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_link/license.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_link/url.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_one_author/has_familyName.yml
@@ -1197,6 +1187,7 @@ files:
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/github/github_from_url_file.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/DOI_RA_not_Crossref_or_DataCite.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/handle_input/unknown_DOI_prefix.yml
+- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/json_feed_url/all_posts.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/json_feed_url/front-matter_blog.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/json_schema_errors/is_valid.yml
 - spec/fixtures/vcr_cassettes/Commonmeta_Metadata/normalize_cc_url/not_found.yml

data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_metadata/blogger_post.yml

@@ -1,141 +0,0 @@
----
-http_interactions:
-- request:
-    method: get
-    uri: https://rogue-scholar.org/api/blogs/https://rogue-scholar.org/api/posts/1jgo59el
-    body:
-      encoding: UTF-8
-      string: ''
-    headers:
-      Connection:
-      - close
-      Host:
-      - rogue-scholar.org
-      User-Agent:
-      - http.rb/5.1.1
-  response:
-    status:
-      code: 308
-      message: Permanent Redirect
-    headers:
-      Cache-Control:
-      - public, max-age=0, must-revalidate
-      Content-Type:
-      - text/plain
-      Date:
-      - Sun, 04 Jun 2023 13:19:22 GMT
-      Location:
-      - "/api/blogs/https:/rogue-scholar.org/api/posts/1jgo59el"
-      Refresh:
-      - 0;url=/api/blogs/https:/rogue-scholar.org/api/posts/1jgo59el
-      Server:
-      - Vercel
-      Strict-Transport-Security:
-      - max-age=63072000
-      X-Vercel-Cache:
-      - MISS
-      X-Vercel-Id:
-      - fra1::c9dh9-1685884762805-30abff0801ab
-      Connection:
-      - close
-      Transfer-Encoding:
-      - chunked
-    body:
-      encoding: ASCII-8BIT
-      string: 'Redirecting to /api/blogs/https:/rogue-scholar.org/api/posts/1jgo59el
-        (308)
-
-        '
-  recorded_at: Sun, 04 Jun 2023 13:19:22 GMT
-- request:
-    method: get
-    uri: https://rogue-scholar.org/api/posts/1jgo59el
-    body:
-      encoding: UTF-8
-      string: ''
-    headers:
-      Connection:
-      - close
-      Host:
-      - rogue-scholar.org
-      User-Agent:
-      - http.rb/5.1.1
-  response:
-    status:
-      code: 200
-      message: OK
-    headers:
-      Age:
-      - '0'
-      Cache-Control:
-      - public, max-age=0, must-revalidate
-      Content-Length:
-      - '5576'
-      Content-Type:
-      - application/json; charset=utf-8
-      Date:
-      - Sun, 04 Jun 2023 13:22:53 GMT
-      Etag:
-      - '"r6tc4lxjtm4ak"'
-      Server:
-      - Vercel
-      Strict-Transport-Security:
-      - max-age=63072000
-      X-Matched-Path:
-      - "/api/posts/[slug]"
-      X-Vercel-Cache:
-      - MISS
-      X-Vercel-Id:
-      - fra1::iad1::p4k6f-1685884969654-20804225b67a
-      Connection:
-      - close
-    body:
-      encoding: UTF-8
-      string: '{"id":"https://iphylo.blogspot.com/2023/05/ten-years-and-million-links.html","short_id":"1jgo59el","url":"https://iphylo.blogspot.com/2023/05/ten-years-and-million-links.html","title":"Ten
-        years and a million links","summary":"As trailed on a Twitter thread last
-        week I’ve been working on a manuscript describing the efforts to map taxonomic
-        names to their original descriptions in the taxonomic literature. Putting
-        together a...","date_published":"2023-05-31T17:26:00Z","date_modified":null,"authors":[{"url":null,"name":"Roderic
-        Page"}],"image":null,"content_html":"<p>As trailed on a Twitter thread last
-        week I’ve been working on a manuscript describing the efforts to map taxonomic
-        names to their original descriptions in the taxonomic literature.</p>\n<blockquote
-        class=\"twitter-tweet\"><p lang=\"en\" dir=\"ltr\">Putting together a manuscript
-        on linking taxonomic names to the primary literature, basically “um, what,
-        exactly, have you been doing all these years?”. TL;DR Across fungi, plants,
-        and animals approx 1.3 million names have been linked to a persistent identifier
-        for a publication.</p>— Roderic Page (@rdmpage) <a href=\"https://twitter.com/rdmpage/status/1661714128413573120?ref_src=twsrc%5Etfw\">May
-        25, 2023</a></blockquote> \n<p>The preprint is on bioRxiv <a href=\"https://doi.org/10.1101/2023.05.29.542697\">doi:10.1101/2023.05.29.542697</a></p>\n<blockquote>\n<p>A
-        major gap in the biodiversity knowledge graph is a connection between taxonomic
-        names and the taxonomic literature. While both names and publications often
-        have persistent identifiers (PIDs), such as Life Science Identifiers (LSIDs)
-        or Digital Object Identifiers (DOIs), LSIDs for names are rarely linked to
-        DOIs for publications. This article describes efforts to make those connections
-        across three large taxonomic databases: Index Fungorum, International Plant
-        Names Index (IPNI), and the Index of Organism Names (ION). Over a million
-        names have been matched to DOIs or other persistent identifiers for taxonomic
-        publications. This represents approximately 36% of names for which publication
-        data is available. The mappings between LSIDs and publication PIDs are made
-        available through ChecklistBank. Applications of this mapping are discussed,
-        including a web app to locate the citation of a taxonomic name, and a knowledge
-        graph that uses data on researcher’s ORCID ids to connect taxonomic names
-        and publications to authors of those names.</p>\n</blockquote>\n<p>Much of
-        the work has been linking taxa to names, which still has huge gaps. There
-        are also interesting differences in coverage between plants, animals, and
-        fungi (see preprint for details).</p>\n\n<div class=\"separator\" style=\"clear:
-        both;\"><a href=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhdWsSQhqi1DErXMIHm28g37-fiALNIsI5eQZmvoX_Fe03ZSwtKHbYt-LCsCCAUop0AGcwy_w7NpIjylVH1hNrM9oW-6j9e6tHASha49TTqFvDg2_tEx3r74RRFsjUo4M_Qat8NmKaZSChOt2hI3LsMjTVLrEVirEckU-9Ei7ug-7OHQlR4LA/s2276/animals-coverage.png\"
-        style=\"display: block; padding: 1em 0; text-align: center; \"><img alt=\"\"
-        border=\"0\" width=\"320\" data-original-height=\"2276\" data-original-width=\"2276\"
-        src=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhdWsSQhqi1DErXMIHm28g37-fiALNIsI5eQZmvoX_Fe03ZSwtKHbYt-LCsCCAUop0AGcwy_w7NpIjylVH1hNrM9oW-6j9e6tHASha49TTqFvDg2_tEx3r74RRFsjUo4M_Qat8NmKaZSChOt2hI3LsMjTVLrEVirEckU-9Ei7ug-7OHQlR4LA/s320/animals-coverage.png\"/></a></div><div
-        class=\"separator\" style=\"clear: both;\"><a href=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjdyxlVJ-oyMCNPmHtHWjSxdxMSJvgzdWRGRF6Ad4dk7ab7gGDpuKdKmS9XhROkopw361ylfsTd1ZkwkF6BN0JlWNnVLCKY1AfryCfWKHkgPQM7u-0SELW9j8RlQIflb6ibaV64gwW7oJrEvOGECvR51F8EW8cRg-1usW-GBM5ymObj7zlObQ/s2276/fungi-coverage.png\"
-        style=\"display: block; padding: 1em 0; text-align: center; \"><img alt=\"\"
-        border=\"0\" width=\"320\" data-original-height=\"2276\" data-original-width=\"2276\"
-        src=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjdyxlVJ-oyMCNPmHtHWjSxdxMSJvgzdWRGRF6Ad4dk7ab7gGDpuKdKmS9XhROkopw361ylfsTd1ZkwkF6BN0JlWNnVLCKY1AfryCfWKHkgPQM7u-0SELW9j8RlQIflb6ibaV64gwW7oJrEvOGECvR51F8EW8cRg-1usW-GBM5ymObj7zlObQ/s320/fungi-coverage.png\"/></a></div><div
-        class=\"separator\" style=\"clear: both;\"><a href=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgf0YBuvNSXWAJTfQ1jk4XSocMzCYHP7t6IPUqhjQ3mftgM_850igWaD2copgNH6Xk6T62xBU641wvwOvXgCCDY3m2xC_gaILXO9RGx8H3Gpy5OOncsLb9smpT2LIgtYOExVBVdDRWqA0AZ8-mQjWL7dL5TiG7MqVu8spT8ACoGOPR_T36hRA/s2276/plants-coverage.png\"
-        style=\"display: block; padding: 1em 0; text-align: center; \"><img alt=\"\"
-        border=\"0\" width=\"320\" data-original-height=\"2276\" data-original-width=\"2276\"
-        src=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgf0YBuvNSXWAJTfQ1jk4XSocMzCYHP7t6IPUqhjQ3mftgM_850igWaD2copgNH6Xk6T62xBU641wvwOvXgCCDY3m2xC_gaILXO9RGx8H3Gpy5OOncsLb9smpT2LIgtYOExVBVdDRWqA0AZ8-mQjWL7dL5TiG7MqVu8spT8ACoGOPR_T36hRA/s320/plants-coverage.png\"/></a></div>\n\n\nThere
-        is also a simple app to demonstrate these links, see <a href=\"https://species-cite.herokuapp.com\">https://species-cite.herokuapp.com</a>.\n\n\n\n<blockquote>\n<p>Written
-        with <a href=\"https://stackedit.io/\">StackEdit</a>.</p>\n</blockquote>","tags":[],"language":"en","blog_id":"tyfqw20","blog":{"id":"tyfqw20","title":"iPhylo","language":"en","favicon":null,"feed_url":"https://iphylo.blogspot.com/feeds/posts/default?alt=rss","home_page_url":"https://iphylo.blogspot.com/","license":"https://creativecommons.org/licenses/by/4.0/legalcode","category":"Natural
-        Sciences"}}'
-  recorded_at: Sun, 04 Jun 2023 13:22:53 GMT
-recorded_with: VCR 6.1.0