commonmeta-ruby 3.2.12 → 3.2.14
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- checksums.yaml +4 -4
- data/Gemfile.lock +1 -1
- data/bin/commonmeta +1 -1
- data/lib/commonmeta/cli.rb +3 -3
- data/lib/commonmeta/crossref_utils.rb +3 -3
- data/lib/commonmeta/readers/json_feed_reader.rb +7 -7
- data/lib/commonmeta/readers/schema_org_reader.rb +1 -1
- data/lib/commonmeta/utils.rb +8 -5
- data/lib/commonmeta/version.rb +1 -1
- data/lib/commonmeta/writers/bibtex_writer.rb +1 -1
- data/lib/commonmeta/writers/ris_writer.rb +1 -1
- data/lib/commonmeta/writers/schema_org_writer.rb +1 -1
- data/spec/cli_spec.rb +9 -0
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_not_indexed.yml +2155 -0
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_unregistered.yml +2010 -0
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/not_indexed_posts.yml +2155 -0
- data/spec/readers/cff_reader_spec.rb +33 -33
- data/spec/readers/codemeta_reader_spec.rb +8 -8
- data/spec/readers/json_feed_reader_spec.rb +40 -12
- data/spec/readers/schema_org_reader_spec.rb +38 -38
- data/spec/utils_spec.rb +3 -3
- data/spec/writers/bibtex_writer_spec.rb +3 -3
- data/spec/writers/cff_writer_spec.rb +2 -2
- data/spec/writers/crossref_xml_writer_spec.rb +21 -9
- data/spec/writers/ris_writer_spec.rb +8 -8
- data/spec/writers/schema_org_writer_spec.rb +6 -6
- metadata +5 -2
@@ -56,7 +56,7 @@ describe Commonmeta::Metadata, vcr: true do
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56
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expect(ris[9]).to eq('DO - 10.3205/zma001102')
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expect(ris[10]).to eq('UR - http://www.egms.de/en/journals/zma/2017-34/zma001102.shtml')
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expect(ris[11]).to start_with('AB - Objective: Competence orientation')
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-
expect(ris[12]).to eq('KW -
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+
expect(ris[12]).to eq('KW - Medical competence')
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expect(ris[22]).to eq('PY - 2017')
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61
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expect(ris[23]).to eq('PB - German Medical Science GMS Publishing House')
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expect(ris[24]).to eq('LA - en')
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@@ -94,8 +94,8 @@ describe Commonmeta::Metadata, vcr: true do
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expect(ris[3]).to eq('DO - 10.5438/4k3m-nyvg')
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expect(ris[4]).to eq('UR - https://blog.datacite.org/eating-your-own-dog-food/')
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expect(ris[5]).to eq('AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...')
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-
expect(ris[6]).to eq('KW -
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98
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-
expect(ris[9]).to eq('KW -
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97
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+
expect(ris[6]).to eq('KW - Datacite')
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+
expect(ris[9]).to eq('KW - Fos: computer and information sciences')
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expect(ris[10]).to eq('PY - 2016')
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expect(ris[11]).to eq('PB - DataCite')
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expect(ris[12]).to eq('LA - en')
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@@ -114,7 +114,7 @@ describe Commonmeta::Metadata, vcr: true do
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expect(ris[4]).to eq('DO - 10.5438/4k3m-nyvg')
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expect(ris[5]).to eq('UR - https://blog.datacite.org/eating-your-own-dog-food')
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expect(ris[6]).to eq('AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...')
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117
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-
expect(ris[7]).to eq('KW -
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+
expect(ris[7]).to eq('KW - Phylogeny')
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expect(ris[14]).to eq('PY - 2016')
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expect(ris[15]).to eq('PB - DataCite')
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expect(ris[16]).to eq('ER - ')
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@@ -129,7 +129,7 @@ describe Commonmeta::Metadata, vcr: true do
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expect(ris[2]).to eq('AU - Fenner, Martin')
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expect(ris[3]).to eq('DO - 10.5438/4k3m-nyvg')
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expect(ris[4]).to eq('AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...')
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-
expect(ris[5]).to eq('KW -
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+
expect(ris[5]).to eq('KW - Datacite')
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expect(ris[8]).to eq('PY - 2016')
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expect(ris[9]).to eq('PB - DataCite')
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expect(ris[10]).to eq('ER - ')
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@@ -146,7 +146,7 @@ describe Commonmeta::Metadata, vcr: true do
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expect(ris[4]).to eq('DO - 10.53731/r79vxn1-97aq74v-ag58n')
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expect(ris[5]).to eq('UR - https://blog.front-matter.io/posts/eating-your-own-dog-food')
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expect(ris[6]).to eq('AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for the scholarly outputs we produce. For the most part this is not research data, but rather technical documents such as the DataCite Schema and its documentation (2016). These outputs also include the posts on this blog, where we discuss topics relev')
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-
expect(ris[7]).to eq('KW -
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+
expect(ris[7]).to eq('KW - Feature')
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expect(ris[8]).to eq('PY - 2016')
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expect(ris[9]).to eq('PB - Front Matter')
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expect(ris[10]).to eq('LA - en')
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@@ -180,7 +180,7 @@ describe Commonmeta::Metadata, vcr: true do
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expect(ris[3]).to eq('DO - 10.5438/qeg0-3gm3')
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expect(ris[4]).to eq('UR - https://github.com/datacite/maremma')
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expect(ris[5]).to eq('AB - Ruby utility library for network requests. Based on Faraday and Excon, provides a wrapper for XML/JSON parsing and error handling. All successful responses are returned as hash with key data, all errors in a JSONAPI-friendly hash with key errors.')
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-
expect(ris[6]).to eq('KW -
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expect(ris[6]).to eq('KW - Faraday')
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expect(ris[9]).to eq('PY - 2017')
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expect(ris[10]).to eq('PB - DataCite')
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expect(ris[11]).to eq('ER - ')
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@@ -196,7 +196,7 @@ describe Commonmeta::Metadata, vcr: true do
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expect(ris[5]).to eq('DO - 10.1594/pangaea.721193')
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expect(ris[6]).to eq('UR - https://doi.pangaea.de/10.1594/PANGAEA.721193')
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expect(ris[8]).to eq('KW - Animalia')
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-
expect(ris[9]).to eq('KW - Bottles or small containers/
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+
expect(ris[9]).to eq('KW - Bottles or small containers/aquaria (<20 l)')
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expect(ris[51]).to eq('PY - 2007')
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expect(ris[52]).to eq('PB - PANGAEA')
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expect(ris[53]).to eq('LA - en')
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@@ -64,7 +64,7 @@ describe Commonmeta::Metadata, vcr: true do
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expect(json['@id']).to eq('https://doi.org/10.5061/dryad.8515')
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expect(json['@type']).to eq('Dataset')
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expect(json['license']).to eq('https://creativecommons.org/publicdomain/zero/1.0/legalcode')
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expect(json['keywords']).to eq('Plasmodium, malaria, mitochondrial genome,
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expect(json['keywords']).to eq('Plasmodium, malaria, mitochondrial genome, parasites')
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end
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it 'Schema.org JSON Cyark' do
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@@ -97,7 +97,7 @@ describe Commonmeta::Metadata, vcr: true do
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{ '@type' => 'Organization',
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'name' => 'University of California, Santa Barbara' }])
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expect(json['version']).to eq('2.0.0')
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expect(json['keywords']).to eq('
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+
expect(json['keywords']).to eq('Data sharing, data repository, dataone')
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end
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it 'Funding' do
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@@ -129,7 +129,7 @@ describe Commonmeta::Metadata, vcr: true do
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expect(json['@id']).to eq('https://doi.org/10.4232/1.2745')
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expect(json['@type']).to eq('Dataset')
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expect(json['name']).to eq('Flash Eurobarometer 54 (Madrid Summit)')
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expect(json['keywords']).to eq('
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expect(json['keywords']).to eq('Kat12 international institutions, relations, conditions, internationale politik und internationale organisationen, wirtschaftssysteme und wirtschaftliche entwicklung, international politics and organisations, economic systems and development')
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end
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it 'subject scheme multiple keywords' do
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@@ -139,7 +139,7 @@ describe Commonmeta::Metadata, vcr: true do
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expect(json['@id']).to eq('https://doi.org/10.1594/pangaea.721193')
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expect(json['@type']).to eq('Dataset')
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expect(json['name']).to eq('Seawater carbonate chemistry and processes during experiments with Crassostrea gigas, 2007')
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expect(json['keywords']).to include('Animalia,
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expect(json['keywords']).to include('Animalia, bottles or small containers/aquaria (<20 l)')
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expect(json['license']).to eq('https://creativecommons.org/licenses/by/3.0/legalcode')
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end
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@@ -224,7 +224,7 @@ describe Commonmeta::Metadata, vcr: true do
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expect(json['name']).to eq('Fully processed, filtered and normalized gene expression matrices (in BED format) for each tissue, which were used as input into FastQTL for eQTL discovery')
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expect(json['version']).to eq('v7')
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expect(json['author']).to eq('@type' => 'Organization', 'name' => 'The GTEx Consortium')
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expect(json['keywords']).to eq('
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expect(json['keywords']).to eq('Gtex, annotation, phenotype, gene regulation, transcriptomics')
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expect(json['datePublished']).to eq('2017')
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expect(json['contentUrl']).to eq('https://storage.googleapis.com/gtex_analysis_v7/single_tissue_eqtl_data/GTEx_Analysis_v7_eQTL_expression_matrices.tar.gz')
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expect(json['schemaVersion']).to eq('http://datacite.org/schema/kernel-4')
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@@ -275,7 +275,7 @@ describe Commonmeta::Metadata, vcr: true do
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expect(json['additionalType']).to eq('CRAM file')
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expect(json['name']).to eq('NWD165827.recab.cram')
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expect(json['author']).to eq('@type' => 'Organization', 'name' => 'TOPMed IRC')
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expect(json['keywords']).to eq('
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expect(json['keywords']).to eq('Topmed, whole genome sequencing')
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expect(json['datePublished']).to eq('2017-11-30')
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expect(json['contentUrl']).to eq([
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's3://cgp-commons-public/topmed_open_access/197bc047-e917-55ed-852d-d563cdbc50e4/NWD165827.recab.cram', 'gs://topmed-irc-share/public/NWD165827.recab.cram'
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metadata
CHANGED
@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: commonmeta-ruby
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version: !ruby/object:Gem::Version
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version: 3.2.
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version: 3.2.14
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platform: ruby
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authors:
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- Martin Fenner
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2023-06-
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+
date: 2023-06-17 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: activesupport
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@@ -1080,6 +1080,8 @@ files:
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- spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/blog_post.yml
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- spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/blog_post_uuid.yml
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- spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_by_blog.yml
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1083
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+
- spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_not_indexed.yml
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1084
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- spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_unregistered.yml
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- spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed_unregistered/blog_post_uuid.yml
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- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml
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1085
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- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/doi_registration_agency/crossref.yml
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@@ -1174,6 +1176,7 @@ files:
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- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/citation_style_language.yml
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1177
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- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/citation_style_language_blog.yml
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- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/front-matter_blog.yml
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1179
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+
- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/not_indexed_posts.yml
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- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/unregistered_posts.yml
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- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/upstream.yml
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- spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/upstream_blog.yml
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