commonmeta-ruby 3.0.10 → 3.2.0

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Files changed (27) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile.lock +37 -36
  3. data/commonmeta.gemspec +1 -1
  4. data/lib/commonmeta/metadata_utils.rb +2 -0
  5. data/lib/commonmeta/readers/json_post_reader.rb +78 -0
  6. data/lib/commonmeta/utils.rb +19 -0
  7. data/lib/commonmeta/version.rb +1 -1
  8. data/spec/author_utils_spec.rb +10 -0
  9. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_item_metadata/blogger_post.yml +94 -0
  10. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_item_metadata/ghost_post.yml +117 -0
  11. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_item_metadata/ghost_post_with_doi.yml +117 -0
  12. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_item_metadata/jekyll_post.yml +170 -0
  13. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_item_metadata/wordpress_post.yml +163 -0
  14. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_post_metadata/blogger_post.yml +94 -0
  15. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_post_metadata/ghost_post_with_doi.yml +117 -0
  16. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_post_metadata/jekyll_post.yml +87 -0
  17. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_post_metadata/wordpress_post.yml +163 -0
  18. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_link/license.yml +221 -0
  19. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_link/url.yml +221 -0
  20. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_item_from_rogue_scholar_with_doi.yml +163 -0
  21. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_item_from_upstream_blog.yml +243 -0
  22. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_post_from_rogue_scholar_with_doi.yml +163 -0
  23. data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_post_from_upstream_blog.yml +243 -0
  24. data/spec/readers/json_post_reader_spec.rb +89 -0
  25. data/spec/utils_spec.rb +330 -314
  26. data/spec/writers/crossref_xml_writer_spec.rb +183 -137
  27. metadata +22 -5
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48
+ it compose?","summary":"One question I have increasingly asked myself in the
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+ past few years. Meaning Can I run this open source software using Docker containers
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+ and a Docker Compose file?As the Docker project turned ten this...","date_published":"2023-05-16T11:36:56Z","date_modified":"2023-05-16T11:36:56Z","authors":[{"url":"https://orcid.org/0000-0003-1419-2405","name":"Martin
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+ Fenner"}],"image":"https://images.unsplash.com/photo-1523351964962-1ee5847816c3?crop=entropy&cs=tinysrgb&fit=max&fm=jpg&ixid=M3wxMTc3M3wwfDF8c2VhcmNofDUzfHxjb250YWluZXJ8ZW58MHx8fHwxNjg0MjMyMTQ0fDA&ixlib=rb-4.0.3&q=80&w=2000","content_html":"
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+ <p><img src=\"https://images.unsplash.com/photo-1523351964962-1ee5847816c3?crop&#x3D;entropy&cs&#x3D;tinysrgb&fit&#x3D;max&fm&#x3D;jpg&ixid&#x3D;M3wxMTc3M3wwfDF8c2VhcmNofDUzfHxjb250YWluZXJ8ZW58MHx8fHwxNjg0MjMyMTQ0fDA&ixlib&#x3D;rb-4.0.3&q&#x3D;80&w&#x3D;2000\"></p><p>One
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+ question I have increasingly asked myself in the past few years. Meaning </p><blockquote>Can
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+ I run this open source software  using Docker containers and a Docker Compose
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+ file?</blockquote><p>As the Docker project <a href=\"https://snyk.io/blog/the-docker-project-turns-10/\">turned
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+ ten this spring</a>, it has become standard practice to distribute open source
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+ software via Docker images and to provide a <a href=\"https://docs.docker.com/compose/\">Docker
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+ Compose</a> file to run the software together with other dependencies. The
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+ <a href=\"https://github.com/docker/awesome-compose\">Awesome Compose</a>
60
+ project has collected many examples, and all you need is a <code>docker-compose.yml</code>file
61
+ and a recent installation of Docker, e.g. <a href=\"https://www.docker.com/products/docker-desktop/\">Docker
62
+ Desktop</a>. Be aware that Docker Compose has evolved over the years. It started
63
+ out as a dedicated Python application but was later integrated into the Docker
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+ application (written in Go) as Compose V2.</p><p>Docker and Docker Compose
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+ allow you to run pretty complex applications without first addressing a long
66
+ list of requirements (which might conflict with other software you have installed),
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+ or needing a long and complex build step where many things can go wrong. For
68
+ example a self-hosted instance of Supabase (a hosted Postgres database with
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+ additional features) that I installed last week following <a href=\"https://supabase.com/docs/guides/self-hosting/docker\">these
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+ instructions</a>.</p><p>An important open source project that I am involved
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+ in is <a href=\"https://inveniordm.docs.cern.ch/\">InvenioRDM</a>, the turn-key
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+ research data management repository. InvenioRDM started in 2019, with a first
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+ production-suitable version in August 2021, and the <a href=\"https://inveniosoftware.org/products/rdm/#status\">next
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+ major goal </a>is to have the large and popular <a href=\"https://zenodo.org/\">Zenodo</a>
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+ repository running on top of InvenioRDM. Zenodo <a href=\"https://blog.zenodo.org/2023/05/08/2023-05-08-10years/\">turned
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+ ten last week</a>, a few weeks after Docker. Interestingly, my personal tenth
77
+ anniversary was last year in May as I became a full-time software developer
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+ and left academic medicine as a medical doctor treating cancer patients in
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+ <a href=\"https://doi.org/10.53731/r294649-6f79289-8cw2j\">May 2012</a>.</p><p>Unfortunately,
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+ InvenioRDM \"doesn''t compose\" yet. It is very close, but there are no ready-made
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+ Docker images to download, and the <a href=\"https://inveniordm.docs.cern.ch/install/\">installation
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+ instructions</a> start with installing a Python command-line tool (invenio-cli).
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+ So if you have 1-2 hours to play with InvenioRDM and get a first impression,
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+ there is no official solution from the InvenioRDM project yet. For this reason,
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+ I started the <a href=\"https://github.com/front-matter/docker-invenio-rdm\">docker-invenio-rdm</a>
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+ repository on Github. It contains a Docker Compose file that uses pre-built
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+ Docker images, and using that file with a <code>docker compose up</code>command
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+ on your local computer should give you a running InvenioRDM within 15 minutes:</p><figure
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+ class=\"kg-card kg-image-card\"><img src=\"https://blog.front-matter.io/content/images/2023/05/Bildschirmfoto-2023-05-11-um-10.37.55.png\"
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+ class=\"kg-image\" alt loading=\"lazy\" width=\"2000\" height=\"1210\" srcset=\"https://blog.front-matter.io/content/images/size/w600/2023/05/Bildschirmfoto-2023-05-11-um-10.37.55.png
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+ 600w, https://blog.front-matter.io/content/images/size/w1000/2023/05/Bildschirmfoto-2023-05-11-um-10.37.55.png
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+ 1000w, https://blog.front-matter.io/content/images/size/w1600/2023/05/Bildschirmfoto-2023-05-11-um-10.37.55.png
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+ 1600w, https://blog.front-matter.io/content/images/2023/05/Bildschirmfoto-2023-05-11-um-10.37.55.png
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+ 2193w\" sizes=\"(min-width: 720px) 720px\"></figure><p>I started this recently
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+ and obviously want to move forward in two directions:</p><ul><li>fine-tune
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+ the initial configuration to provide a great initial experience with InvenioRDM,
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+ e.g. making it easy to <a href=\"https://inveniordm.docs.cern.ch/develop/topics/theming/\">theme</a>
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+ the InvenioRDM instance</li><li>make this an official part of the InvenioRDM
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+ project, extending the <a href=\"https://github.com/inveniosoftware/docker-invenio\">docker-invenio</a>
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+ GitHub repository that provides Docker base images for InvenioRDM and other
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+ projects using the Invenio software.</li></ul><p>But of course, Docker Compose
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+ is not the answer to all questions regarding running Docker-based infrastructure.
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+ For production environments, most people shy away from using Docker Compose.
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+ The reasons for that and the alternatives will be the topic of a future blog
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+ post (spoiler: there is exciting news).</p><p>Docker Compose also needs more
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+ work to be set up correctly for development environments. It is a common practice
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+ and a workflow I used while working at DataCite (where we launched Docker-based
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+ infrastructure in 2016), but for now, the easiest way to set up InvenioRDM
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+ development environments is using the <a href=\"https://inveniordm.docs.cern.ch/install/\">invenio-cli
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+ tool with a local development environment</a>.</p><p>Please reach out to me
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+ with feedback on running Docker Compose for InvenioRDM (use the <a href=\"https://github.com/front-matter/docker-invenio-rdm/discussions\">discussions</a>
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+ feature in the GitHub repo), or if you have questions about running InvenioRDM
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+ in production.</p> ","tags":["News"],"language":"en","blog_id":"f0m0e38","blog":{"id":"f0m0e38","title":"Front
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+ Matter","language":"en","favicon":"https://blog.front-matter.io/favicon.png","feed_url":"https://blog.front-matter.io/atom/","home_page_url":"https://blog.front-matter.io/","license":"https://creativecommons.org/licenses/by/4.0/legalcode","category":"Engineering
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+ and Technology"}}'
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+ string: '{"id":"https://citationstyles.org/2014/01/29/mendeley-donates-to-the-csl-project/","short_id":"1jdkoe52","url":"https://citationstyles.org/2014/01/29/mendeley-donates-to-the-csl-project/","title":"Mendeley
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+ Donates to the CSL Project","summary":"CSL has seen a lot of growth in recent
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+ years: more than 20 software products use CSL (see the citationstyles.org
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+ frontpage), and we offer over 6750 free citation styles, covering thousands
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+ of scientific...","date_published":"2014-01-29T00:00:00Z","date_modified":"2014-01-29T00:00:00Z","authors":[{"url":null,"name":"Rintze
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+ M. Zelle"}],"image":null,"content_html":"<p>CSL has seen a lot of growth in
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+ recent years: more than 20 software products use CSL (see the <a href=\"http://citationstyles.org/\">citationstyles.org</a>
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+ frontpage), and we offer over 6750 free citation styles, covering thousands
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+ of scientific journals.</p>\n\n<p><img style=\"float: right;\" src=\"/assets/img/mendeley-csl-stickers.jpg\"
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+ width=\"320\" height=\"256\" /></p>\n\n<p>We could only have come this far
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+ with our great user community, and with a lot of institutional support from
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+ Mendeley, Papers, Zotero, and others.</p>\n\n<p><a href=\"http://www.mendeley.com/\">Mendeley</a>
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+ has been using CSL since their first release in 2008, and adopted Frank Bennett’s
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+ <a href=\"https://bitbucket.org/fbennett/citeproc-js/wiki/Home\">citeproc-js</a>
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+ CSL processor in 2010.\nThey have since moved away from simply using CSL to
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+ become one of our biggest contributors.\nCarles Pina of Mendeley helped us
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+ improve the central CSL style repository, and create CSL styles for 1500 Elsevier
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+ journals.\nMendeley also <a href=\"http://www.prnewswire.co.uk/news-releases/mendeley-teams-up-with-columbia-university-libraries-to-develop-a-citation-style-language-editor-through-125000-sloan-foundation-award-144578085.html\">collaborated</a>
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+ with Columbia University Libraries to created the <a href=\"http://editor.citationstyles.org/about/\">Visual
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+ CSL Editor</a>, which was funded by a Sloan Foundation Award and <a href=\"http://blog.mendeley.com/academic-features/make-your-citations-look-exactly-how-they-should-with-mendeleys-visual-citation-style-editor/\">released</a>
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+ in 2012.</p>\n\n<p>Now, Mendeley, together with Elsevier, stepped up once
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+ more, and made the first major financial contribution to the CSL project.\nWe
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+ received a $5000 donation, which we will use to cover project expenses and
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+ help ensure the long-term sustainability of CSL.\nMendeley is one of the most
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+ popular products to use CSL, and this level of involvement is crucial in helping
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+ us move CSL forward.\nWe hope others will follow Mendeley’s lead, and we look
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+ forward to continue improving CSL.</p>\n\n<p>In particular, we will collaborate
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+ with Zotero on their upcoming data model redesign, which should help us provide
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+ guidance to other projects on which fields each item type should carry and,
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+ among other things, improve support for primary and archival sources.\nWe
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+ also plan to adopt features from Frank Bennett’s <a href=\"http://citationstylist.org/\">Multilingual
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+ Zotero</a> into official CSL, such as better support for legal citations and
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+ citing items in multiple languages.\nWe’ll of course continue to maintain
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+ the project website and documentation, and handle style submissions to the
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+ repository.\nFinally, we’ll keep reaching out to publishers to further increase
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+ the number of journals covered by CSL styles.</p>","tags":[],"language":"en","blog_id":"prmb582","blog":{"id":"prmb582","title":"Citation
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+ Style Language","language":"en","favicon":null,"feed_url":"https://citationstyles.org/feed.xml","home_page_url":"https://citationstyles.org/","license":"https://creativecommons.org/licenses/by/4.0/legalcode","category":"Engineering
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+ and Technology"}}'
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+ string: '{"id":"https://citationstyles.org/2020/07/11/seeking-public-comment-on-CSL-1-0-2/","short_id":"1jdkwod5","url":"https://citationstyles.org/2020/07/11/seeking-public-comment-on-CSL-1-0-2/","title":"Seeking
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+ Public Comment on CSL 1.0.2 Release","summary":"Over the past few months,
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+ Citation Style Language developers have worked to address a backlog of feature
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+ requests. This work will be reflected in two upcoming releases. The first
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+ of these, 1.0.2, is slated...","date_published":"2020-07-11T00:00:00Z","date_modified":"2020-07-11T00:00:00Z","authors":[{"url":null,"name":"Sebastian
135
+ Karcher"}],"image":null,"content_html":"<p>Over the past few months, Citation
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+ Style Language developers have worked to address a backlog of feature requests.
137
+ This work will be reflected in two upcoming releases. The first of these,
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+ 1.0.2, is slated for release shortly. Its focus is on easy to implement, non-controversial
139
+ additions, principally new item types, fields, and terms. We’re seeking public
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+ comment on the planned released from now until <strong>July 26, 2020, 12pm
141
+ EDT</strong>.</p>\n\n<p>A non-technical summary of the release can be found
142
+ in a <a href=\"https://docs.google.com/document/d/1wY1cOOamDYYh8VNW7h_uleqieBDGOa_LYsRiVdQy1RI/edit#heading=h.wsywjzy5t4j6\">google
143
+ doc here</a>. For more technical details, you can follow the development on
144
+ the <a href=\"https://github.com/orgs/citation-style-language/projects/3\">github
145
+ project board</a>. We welcome feedback directly on the google doc, in specific
146
+ github issues, or on our <a href=\"https://discourse.citationstyles.org/\">forums</a>.</p>\n\n<p>Tremendous
147
+ thanks to Bruce D’Arcus, Denis Maier, and Brenton Wiernik, who did the bulk
148
+ of the work of organizing proposals accumulated over the last 8 years and
149
+ preparing the release.</p>\n\n<h2 id=\"previewing-csl-11\">Previewing CSL
150
+ 1.1</h2>\n<p>CSL 1.1, slated for release later this year, will include more
151
+ significant extensions of CSL functionality. While we’ll have a separate public
152
+ comment period for this release, we’re happy for input on the ongoing discussions
153
+ on github and the forums. In particular, we’re eager to hear from projects
154
+ implementing CSL styles, both in a citeproc and in user-facing applications
155
+ such as reference managers or citation formatters.</p>\n\n<p>This release
156
+ will primarily add the following new features:</p>\n<ul>\n <li>Full support
157
+ for narrative citation styles (“Like Doe (2018)”).</li>\n <li>Ability to
158
+ specify more complex conditional logic.</li>\n <li>Ability to independently
159
+ format subtitles and main titles.</li>\n <li>A new “related” attribute to
160
+ express related reviewed and original items (still in discussion).</li>\n <li>Improvements
161
+ to the CSL input format(s):\n <ul>\n <li>Adopting the new EDTF ISO
162
+ standard, which offers full support for date ranges, seasons, uncertain and
163
+ approximate qualifiers, and decades and centuries.</li>\n <li>A new “custom”
164
+ property to add extension metadata.</li>\n <li>New related modelling
165
+ to match the new style attribute (as above, still in discussion).</li>\n <li>An
166
+ official YAML representation, which can be validated with the same JSON schemas.</li>\n </ul>\n </li>\n</ul>","tags":[],"language":"en","blog_id":"prmb582","blog":{"id":"prmb582","title":"Citation
167
+ Style Language","language":"en","favicon":null,"feed_url":"https://citationstyles.org/feed.xml","home_page_url":"https://citationstyles.org/","license":"https://creativecommons.org/licenses/by/4.0/legalcode","category":"Engineering
168
+ and Technology"}}'
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48
+ betonen die Rolle von wissenschaftsgeleiteten Open-Access-Modellen jenseits
49
+ von APCs","summary":"Die EU-Wissenschaftsministerien haben sich auf ihrer
50
+ heutigen Sitzung in Brüssel unter dem Titel “Council conclusions on high-quality,
51
+ transparent, open, trustworthy and equitable scholarly publishing” (PDF...","date_published":"2023-05-23T09:16:53Z","date_modified":"2023-05-23T09:16:53Z","authors":[{"url":"https://orcid.org/0000-0003-3334-2771","name":"Heinz
52
+ Pampel"}],"image":null,"content_html":"\n<p>Die EU-Wissenschaftsministerien
53
+ haben sich auf ihrer <a href=\"https://www.consilium.europa.eu/en/press/press-releases/2023/05/23/council-calls-for-transparent-equitable-and-open-access-to-scholarly-publications/\">heutigen
54
+ Sitzung</a> in Brüssel unter dem Titel “Council conclusions on high-quality,
55
+ transparent, open, trustworthy and equitable scholarly publishing” (<a href=\"https://data.consilium.europa.eu/doc/document/ST-8827-2023-INIT/en/pdf\">PDF
56
+ der englischen Version</a>, <a href=\"https://data.consilium.europa.eu/doc/document/ST-8827-2023-INIT/de/pdf\">PDF
57
+ der deutschen Version</a>) mit den aktuellen Herausforderungen des wissenschaftlichen
58
+ Publikationswesens befasst.</p>\n\n\n\n<p>Bereits im Vorfeld der Sitzung der
59
+ Wissenschaftsministerien wurden verschiedene Versionen der Erklärung öffentlich
60
+ diskutiert (siehe z.B.<a href=\"https://sciencebusiness.net/news/Universities/leaked-eu-member-states-set-out-reform-scientific-publishing\">
61
+ Science Business</a> und<a href=\"https://www.timeshighereducation.com/news/can-eu-make-parallel-publishing-system-work\">
62
+ Times Higher Education</a>). Im Kern stand die Frage, inwiefern das EU-Papier
63
+ den Fokus auf Finanzierungs- und Geschäftsmodelle abseits von Publikationsgebühren
64
+ (Article Processing Charges, APCs) legt und ob sogar eine Abkehr von der Unterstützung
65
+ dieses Modells durch die öffentliche Hand in Europa betont wird.</p>\n\n\n\n<p>Schweden
66
+ hatte das Thema im Rahmen seiner EU-Ratspräsidentschaft augegriffen und bereits
67
+ im <a href=\"https://wisspub.net/2023/02/10/eu-wissenschaftsministerien-erortern-open-science/\">Februar</a>
68
+ in einem Hintergrund-Papier adressiert. Schon in diesem Briefing Paper wurde
69
+ die Problematik steigender Preise für die wissenschaftlichen Fachinformation
70
+ betont. </p>\n\n\n\n<p>In der jetzt verabschiedeten Version der Schlussfolgerungen
71
+ die Forderung nach sofortigem Open Access für wissenschaftliche Publikationen,
72
+ die im Rahmen der öffentlich geförderten Forschung entstehen, nochmals betont.
73
+ Dieses Ziel wurde<a href=\"https://wisspub.net/2016/05/27/eu-und-g7-staaten-setzen-auf-open-science/\">
74
+ bereits 2016</a> von den EU-Wissenschaftsministerien erhoben. Die Wissenschaftsminister:innen
75
+ hatten damals einen Open-Access-Anteil von 100 % bis 2020 gefordert. Dieser
76
+ Wert wurde bisher jedoch nicht erreicht. In Deutschland liegt der Open-Access-Anteil
77
+ zum Beispiel bei <a href=\"https://open-access-monitor.de/\">63</a> Prozent,
78
+ während die Niederlande im Publikationsjahr 2021 einen Anteil von <a href=\"https://www.openaccess.nl/en/in-the-netherlands/monitor\">82</a> Prozent
79
+ erreichten.</p>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"alignleft
80
+ size-large is-resized\"><a href=\"https://wisspub.files.wordpress.com/2023/05/bildschirmc2adfoto-2023-05-23-um-11.05.39.png\"><img
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+ loading=\"lazy\" data-attachment-id=\"20457\" data-permalink=\"https://wisspub.net/2023/05/23/eu-mitgliedstaaten-betonen-die-rolle-von-wissenschaftsgeleiteten-open-access-modellen-jenseits-von-apcs/bildschirmc2adfoto-2023-05-23-um-11-05-39/#main\"
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+ data-large-file=\"https://wisspub.files.wordpress.com/2023/05/bildschirmc2adfoto-2023-05-23-um-11.05.39.png?w=630\"
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+ src=\"https://wisspub.files.wordpress.com/2023/05/bildschirmc2adfoto-2023-05-23-um-11.05.39.png?w=723\"
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+ alt=\"\" class=\"wp-image-20457\" width=\"353\" height=\"500\" srcset=\"https://wisspub.files.wordpress.com/2023/05/bildschirmc2adfoto-2023-05-23-um-11.05.39.png?w=353
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+ 353w, https://wisspub.files.wordpress.com/2023/05/bildschirmc2adfoto-2023-05-23-um-11.05.39.png?w=706
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+ 706w, https://wisspub.files.wordpress.com/2023/05/bildschirmc2adfoto-2023-05-23-um-11.05.39.png?w=106
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+ 106w, https://wisspub.files.wordpress.com/2023/05/bildschirmc2adfoto-2023-05-23-um-11.05.39.png?w=212
92
+ 212w\" sizes=\"(max-width: 353px) 100vw, 353px\" /></a><figcaption class=\"wp-element-caption\"><em>“Council
93
+ conclusions on high-quality, transparent, open, trustworthy and equitable
94
+ scholarly publishing”</em></figcaption></figure></div>\n\n\n<p>Angesichts
95
+ steigender Abonnementkosten und ähnlicher Entwicklungen im Bereich der Publikationsgebühren
96
+ für Open Access und hybride Optionen betont das EU-Papier das Potenzial von
97
+ Geschäfts- und Finanzierungsmodellen, die weder die Leser:innen noch die Autor:innen
98
+ finanziell belasten und sich durch angemessene und transparente Preise auszeichnen
99
+ (Punkt 6). Es wird beklagt, dass die steigenden Preise für wissenschaftliche
100
+ Fachinformationen zu Ungleichheiten führen und die öffentliche Hand in Europa
101
+ zum Nachteil der Forschung belasten (Punkt 5).</p>\n\n\n\n<p>Aufgrund dieser
102
+ Kritik am kommerziellen Verlagswesen wird in zwei bemerkenswerten Punkten
103
+ (6 und 7) die Bedeutung von nicht gewinnorientierten Open-Access-Modellen
104
+ betont. Wortlaut:</p>\n\n\n\n<p>“The Council of the European Union [&#8230;]
105
+ highlights the importance of not-for-profit, scholarly open access publishing
106
+ models that do not charge fees to authors or readers and where authors can
107
+ publish their work without funding/institutional eligibility criteria; notes
108
+ the variety of models that do not depend on article processing charges or
109
+ similar per-unit charges and stresses the importance of supporting the development
110
+ of such models led by public research organisations; [&#8230;] stresses that
111
+ it is essential to avoid situations where researchers are limited in their
112
+ choice of publication channels due to financial capacities rather than quality
113
+ criteria, and where access to research publications is restricted by paywalls”</p>\n\n\n\n<p>Zwar
114
+ sind diese Unterstreichung und Betonung sicherlich nur ein kleiner Schritt
115
+ auf dem Weg zur Gestaltung eines pluralistischen, transparenten und nachhaltigen
116
+ Systems der digtialen Wissenschaftskommunikation. Sie kommen jedoch zu einem
117
+ Zeitpunkt, zu dem die Kritik an dem Modell der Publikationsgebühren wächst.</p>\n\n\n\n<p>Erst
118
+ kürzlich hat die Ivy Plus Libraries Confederation (IPLC) in den USA, als Zusammenschluss
119
+ von Bibliotheken forschungsstarker Einrichtungen, das APC-Modell<a href=\"https://ivpluslibraries.org/2023/03/iplc-letter-to-the-office-of-science-technology-policy/\">
120
+ deutlich kritisiert</a>. Die Bibliothekar:innen sehen die Gefahr, dass Publikationsgebühren
121
+ Ungleichheit fördern und Forschende aus finanziell weniger gut ausgestatteten
122
+ Regionen beim Open-Access-Publizieren benachteiligt werden. Sie charakterisieren
123
+ APCs als eine Hürde bei der Publikation.</p>\n\n\n\n<p>Auch hat der öffentlichkeitswirksame
124
+ <a href=\"https://www.nature.com/articles/d41586-023-01391-5\">Rücktritt</a>
125
+ des Editorial Boards der Elsevier-Zeitschrift NeuroImage aufgrund steigender
126
+ APCs den kritischen Blick auf das Geschäftsmodell gelenkt. Die zurückgetretenen
127
+ Herausgebenden haben nun bei MIT Press ein neues Journal <a href=\"https://mitpress.mit.edu/the-mit-press-to-launch-open-access-journal-imaging-neuroscience/\">gegründet</a>,
128
+ das niedrige APCs erhebt. Dieser Schritt zeigt, dass nicht APCs das Problem
129
+ sein müssen, sondern vielmehr deren Preisgestaltung.</p>\n\n\n\n<p>Um die
130
+ im obrigen Zitat formulierten Anliegen der EU-Staaten zu adressieren, soll
131
+ die Koordinierung innerhalb der EU und mit globalen Partnern zur Unterstützung
132
+ von Chancengleichheit im wissenschaftlichen Publizieren gefördert werden (Absatz
133
+ 7). Hierzu sollen auch abgestimmte Finanzierungsstrategien entwickelt werden,
134
+ um die Anzahl von not-for-profit open access multi-format scholarly publishing
135
+ models in Europe with no costs for authors or readers&#8220; signifikant zu
136
+ erhöhen (Absatz 11).</p>\n\n\n\n<p>Auch soll das Anliegen durch eine mögliche
137
+ Beteiligung der EU-Mitgliedstaaten an Open Research Europe (ORE), der von
138
+ der EU-Kommission finanzierten Publikationsplattform für Autor:innen aus den
139
+ EU-Rahmenprogrammen, vorangetrieben werden (Absatz 15).&nbsp;</p>\n\n\n\n<p>In
140
+ der <a href=\"https://www.consilium.europa.eu/de/press/press-releases/2023/05/23/council-calls-for-transparent-equitable-and-open-access-to-scholarly-publications/\">Pressemitteilung</a>
141
+ werden weitere Themen der verabschiedeten Schlussfolgerungen augegriffen:&nbsp;</p>\n\n\n\n<p>“Some
142
+ Member States have introduced secondary publication rights into their national
143
+ copyright legislation, enabling open access to scholarly publications which
144
+ involve public funds. The Council encourages national open access policies
145
+ and guidelines to make scholarly publications immediately openly accessible
146
+ under open licences. The conclusions acknowledge positive developments in
147
+ terms of monitoring progress, like within the framework of the European Open
148
+ Science Cloud (EOSC), and suggest including open science monitoring in the
149
+ European Research Area monitoring mechanism.”</p>\n\n\n\n<p>Die Schlussfolgerungen
150
+ können zweifellos als Stärkung des wissenschaftsgeleiteten Open-Access-Publizierens
151
+ in akademischer Trägerschaft  interpretiert werden. Der eingeschlagene Kurs
152
+ ist zu begrüßen. Um die bereits vielfältigen Open-Access-Publikationsangebote
153
+ und -Verlage, die von wissenschaftlichen Einrichtungen betrieben oder gemeinsam
154
+ (mit angemessenen und ohne APCs) finanziert werden, nachhaltig zu stärken,
155
+ ist es erforderlich, kooperative Finanzierungsmodelle auf internationaler
156
+ Ebene zu entwickeln und umzusetzen. Dafür sind, wie das Papier richtig betont,
157
+ abgestimmte Förderaktivitäten erforderlich, die beispielsweise in Deutschland,
158
+ komplementär zu DEAL, dem wissenschaftsgeleiteten Open-Access-Publizieren
159
+ einen deutlichen Aufschwung geben.</p>\n","tags":["Open Access","Open Access
160
+ Transformation","Open Science","EU"],"language":"de","blog_id":"34zkv26","blog":{"id":"34zkv26","title":"wisspub.net","language":"de","favicon":null,"feed_url":"https://wisspub.net/feed/atom/","home_page_url":"https://wisspub.net/","license":"https://creativecommons.org/licenses/by/4.0/legalcode","category":"Engineering
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+ and Technology"}}'
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48
+ years and a million links","summary":"As trailed on a Twitter thread last
49
+ week I’ve been working on a manuscript describing the efforts to map taxonomic
50
+ names to their original descriptions in the taxonomic literature. Putting
51
+ together a...","date_published":"2023-05-31T17:26:00Z","date_modified":null,"authors":[{"url":null,"name":"Roderic
52
+ Page"}],"image":null,"content_html":"<p>As trailed on a Twitter thread last
53
+ week I’ve been working on a manuscript describing the efforts to map taxonomic
54
+ names to their original descriptions in the taxonomic literature.</p>\n<blockquote
55
+ class=\"twitter-tweet\"><p lang=\"en\" dir=\"ltr\">Putting together a manuscript
56
+ on linking taxonomic names to the primary literature, basically “um, what,
57
+ exactly, have you been doing all these years?”. TL;DR Across fungi, plants,
58
+ and animals approx 1.3 million names have been linked to a persistent identifier
59
+ for a publication.</p>— Roderic Page (@rdmpage) <a href=\"https://twitter.com/rdmpage/status/1661714128413573120?ref_src=twsrc%5Etfw\">May
60
+ 25, 2023</a></blockquote> \n<p>The preprint is on bioRxiv <a href=\"https://doi.org/10.1101/2023.05.29.542697\">doi:10.1101/2023.05.29.542697</a></p>\n<blockquote>\n<p>A
61
+ major gap in the biodiversity knowledge graph is a connection between taxonomic
62
+ names and the taxonomic literature. While both names and publications often
63
+ have persistent identifiers (PIDs), such as Life Science Identifiers (LSIDs)
64
+ or Digital Object Identifiers (DOIs), LSIDs for names are rarely linked to
65
+ DOIs for publications. This article describes efforts to make those connections
66
+ across three large taxonomic databases: Index Fungorum, International Plant
67
+ Names Index (IPNI), and the Index of Organism Names (ION). Over a million
68
+ names have been matched to DOIs or other persistent identifiers for taxonomic
69
+ publications. This represents approximately 36% of names for which publication
70
+ data is available. The mappings between LSIDs and publication PIDs are made
71
+ available through ChecklistBank. Applications of this mapping are discussed,
72
+ including a web app to locate the citation of a taxonomic name, and a knowledge
73
+ graph that uses data on researcher’s ORCID ids to connect taxonomic names
74
+ and publications to authors of those names.</p>\n</blockquote>\n<p>Much of
75
+ the work has been linking taxa to names, which still has huge gaps. There
76
+ are also interesting differences in coverage between plants, animals, and
77
+ fungi (see preprint for details).</p>\n\n<div class=\"separator\" style=\"clear:
78
+ both;\"><a href=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhdWsSQhqi1DErXMIHm28g37-fiALNIsI5eQZmvoX_Fe03ZSwtKHbYt-LCsCCAUop0AGcwy_w7NpIjylVH1hNrM9oW-6j9e6tHASha49TTqFvDg2_tEx3r74RRFsjUo4M_Qat8NmKaZSChOt2hI3LsMjTVLrEVirEckU-9Ei7ug-7OHQlR4LA/s2276/animals-coverage.png\"
79
+ style=\"display: block; padding: 1em 0; text-align: center; \"><img alt=\"\"
80
+ border=\"0\" width=\"320\" data-original-height=\"2276\" data-original-width=\"2276\"
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+ src=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhdWsSQhqi1DErXMIHm28g37-fiALNIsI5eQZmvoX_Fe03ZSwtKHbYt-LCsCCAUop0AGcwy_w7NpIjylVH1hNrM9oW-6j9e6tHASha49TTqFvDg2_tEx3r74RRFsjUo4M_Qat8NmKaZSChOt2hI3LsMjTVLrEVirEckU-9Ei7ug-7OHQlR4LA/s320/animals-coverage.png\"/></a></div><div
82
+ class=\"separator\" style=\"clear: both;\"><a href=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjdyxlVJ-oyMCNPmHtHWjSxdxMSJvgzdWRGRF6Ad4dk7ab7gGDpuKdKmS9XhROkopw361ylfsTd1ZkwkF6BN0JlWNnVLCKY1AfryCfWKHkgPQM7u-0SELW9j8RlQIflb6ibaV64gwW7oJrEvOGECvR51F8EW8cRg-1usW-GBM5ymObj7zlObQ/s2276/fungi-coverage.png\"
83
+ style=\"display: block; padding: 1em 0; text-align: center; \"><img alt=\"\"
84
+ border=\"0\" width=\"320\" data-original-height=\"2276\" data-original-width=\"2276\"
85
+ src=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjdyxlVJ-oyMCNPmHtHWjSxdxMSJvgzdWRGRF6Ad4dk7ab7gGDpuKdKmS9XhROkopw361ylfsTd1ZkwkF6BN0JlWNnVLCKY1AfryCfWKHkgPQM7u-0SELW9j8RlQIflb6ibaV64gwW7oJrEvOGECvR51F8EW8cRg-1usW-GBM5ymObj7zlObQ/s320/fungi-coverage.png\"/></a></div><div
86
+ class=\"separator\" style=\"clear: both;\"><a href=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgf0YBuvNSXWAJTfQ1jk4XSocMzCYHP7t6IPUqhjQ3mftgM_850igWaD2copgNH6Xk6T62xBU641wvwOvXgCCDY3m2xC_gaILXO9RGx8H3Gpy5OOncsLb9smpT2LIgtYOExVBVdDRWqA0AZ8-mQjWL7dL5TiG7MqVu8spT8ACoGOPR_T36hRA/s2276/plants-coverage.png\"
87
+ style=\"display: block; padding: 1em 0; text-align: center; \"><img alt=\"\"
88
+ border=\"0\" width=\"320\" data-original-height=\"2276\" data-original-width=\"2276\"
89
+ src=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgf0YBuvNSXWAJTfQ1jk4XSocMzCYHP7t6IPUqhjQ3mftgM_850igWaD2copgNH6Xk6T62xBU641wvwOvXgCCDY3m2xC_gaILXO9RGx8H3Gpy5OOncsLb9smpT2LIgtYOExVBVdDRWqA0AZ8-mQjWL7dL5TiG7MqVu8spT8ACoGOPR_T36hRA/s320/plants-coverage.png\"/></a></div>\n\n\nThere
90
+ is also a simple app to demonstrate these links, see <a href=\"https://species-cite.herokuapp.com\">https://species-cite.herokuapp.com</a>.\n\n\n\n<blockquote>\n<p>Written
91
+ with <a href=\"https://stackedit.io/\">StackEdit</a>.</p>\n</blockquote>","tags":[],"language":"en","blog_id":"tyfqw20","blog":{"id":"tyfqw20","title":"iPhylo","language":"en","favicon":null,"feed_url":"https://iphylo.blogspot.com/feeds/posts/default?alt=rss","home_page_url":"https://iphylo.blogspot.com/","license":"https://creativecommons.org/licenses/by/4.0/legalcode","category":"Natural
92
+ Sciences"}}'
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