cmdstan 0.1.5 → 0.1.6

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Files changed (8) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +4 -0
  3. data/LICENSE.txt +1 -1
  4. data/ext/cmdstan/extconf.rb +2 -2
  5. data/lib/cmdstan/mcmc.rb +4 -3
  6. data/lib/cmdstan/model.rb +2 -2
  7. data/lib/cmdstan/version.rb +1 -1
  8. metadata +5 -47
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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- data.tar.gz: 06da4d0a6ca5f5a84d05c442ef860efc2b0f0d619645139dede04a924564c5c6
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+ metadata.gz: 3b919404c064aa08c6766d3718c168f70ef422e32d66eebf6de84b901e244d2c
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+ data.tar.gz: 70f11779bdb74a2d0ba2a95ba6ba37c05cd5e637422667474765f3bdbfca2efe
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  SHA512:
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- metadata.gz: 86c6687ba6802f658b865f8f94a56d7f2bdc24abc5dc5606dc389b5fba2558648b1dc41b3b3762c4d38478caed95d47e35ba15a6434379af5d8f9eb5a1173f74
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- data.tar.gz: f52cc26a90504161e3f5df6848509a42341f0725e23936741447962f6777ea8706998870ee2d2b6e8c8efd50e08778678e45b9273ce4a7aabe848c54bbbd7ad2
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+ metadata.gz: 1238805b583a22b5aef689a70ce0eba43a270e9a090ce531038ac8e93a2d386f202ff800ef80247cb118edf37ef06fe5a9230c9589070a8b6f5e463c6a19363d
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+ data.tar.gz: 7e7c0cdf1b481a400844605eded2822d644eb441f85875bd65d9b91d856150dd40d9a83671d19d2693c28dbae4c17a4af3b07a336a133909c30f7fa9802b2b90
data/CHANGELOG.md CHANGED
@@ -1,3 +1,7 @@
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+ ## 0.1.6 (2021-02-08)
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+
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+ - Updated CmdStan to 2.26.0
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+
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  ## 0.1.5 (2020-11-21)
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  - Added `tbb` to path for Linux
data/LICENSE.txt CHANGED
@@ -1,7 +1,7 @@
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  BSD 3-Clause License
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  Copyright (c) 2019, Stan Developers and their Assignees
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- Copyright (c) 2020, Andrew Kane
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+ Copyright (c) 2020-2021, Andrew Kane
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  All rights reserved.
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  Redistribution and use in source and binary forms, with or without
data/ext/cmdstan/extconf.rb CHANGED
@@ -3,8 +3,8 @@ require "fileutils"
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  require "net/http"
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  require "tmpdir"
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- version = "2.25.0"
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- checksum = "6bd90c6513d386f22007750f136c3f8db0132aa3e80c7298095516c68ab95a4a"
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+ version = "2.26.0"
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+ checksum = "0bc5529a4818e70ef8181191a515ea5e1a6fce326dda41a040f99deb89bcb663"
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  url = "https://github.com/stan-dev/cmdstan/releases/download/v#{version}/cmdstan-#{version}.tar.gz"
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  $stdout.sync = true
data/lib/cmdstan/mcmc.rb CHANGED
@@ -25,11 +25,12 @@ module CmdStan
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  end
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  def summary
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- csv_file = Tempfile.new
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- run_command "#{CmdStan.path}/bin/stansummary#{extension}", "--csv_file=#{csv_file.path}", *@output_files.map(&:path)
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+ # add suffix since path can't already exist
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+ path = "#{Tempfile.new.path}.csv"
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+ run_command "#{CmdStan.path}/bin/stansummary#{extension}", "--csv_filename=#{path}", *@output_files.map(&:path)
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  result = {}
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- CSV.foreach(csv_file.path, headers: true, converters: :numeric) do |row|
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+ CSV.foreach(path, headers: true, converters: :numeric) do |row|
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  value = row.to_h
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  name = value.delete("name")
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  result[name] = value if name == "lp__" || !name.end_with?("__")
data/lib/cmdstan/model.rb CHANGED
@@ -61,7 +61,7 @@ module CmdStan
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  args << "num_samples=#{sampling_iters.to_i}" if sampling_iters
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  args += ["algorithm=hmc", "adapt", "engaged=1"]
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- run_command *args
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+ run_command(*args)
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  output_files << output_file
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  end
@@ -99,7 +99,7 @@ module CmdStan
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  args << "algorithm=#{algorithm.to_s.downcase}" if algorithm
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  args << "iter=#{iter.to_i}" if iter
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- run_command *args
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+ run_command(*args)
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  MLE.new(output_file)
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  end
data/lib/cmdstan/version.rb CHANGED
@@ -1,3 +1,3 @@
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  module CmdStan
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- VERSION = "0.1.5"
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+ VERSION = "0.1.6"
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  end
metadata CHANGED
@@ -1,59 +1,17 @@
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  --- !ruby/object:Gem::Specification
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  name: cmdstan
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  version: !ruby/object:Gem::Version
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- version: 0.1.5
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+ version: 0.1.6
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  platform: ruby
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  authors:
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  - Andrew Kane
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2020-11-21 00:00:00.000000000 Z
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- dependencies:
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- - !ruby/object:Gem::Dependency
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- name: bundler
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- requirement: !ruby/object:Gem::Requirement
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- requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: '0'
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- type: :development
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- prerelease: false
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- version_requirements: !ruby/object:Gem::Requirement
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- requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: '0'
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- - !ruby/object:Gem::Dependency
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- name: rake
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- requirement: !ruby/object:Gem::Requirement
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- requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: '0'
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- type: :development
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- prerelease: false
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- version_requirements: !ruby/object:Gem::Requirement
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- requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: '0'
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- - !ruby/object:Gem::Dependency
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- name: minitest
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- requirement: !ruby/object:Gem::Requirement
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- requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: '5'
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- type: :development
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- prerelease: false
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- version_requirements: !ruby/object:Gem::Requirement
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- requirements:
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- - - ">="
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- - !ruby/object:Gem::Version
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- version: '5'
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+ date: 2021-02-08 00:00:00.000000000 Z
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+ dependencies: []
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  description:
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- email: andrew@chartkick.com
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+ email: andrew@ankane.org
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  executables: []
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  extensions:
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  - ext/cmdstan/extconf.rb
@@ -89,7 +47,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  - !ruby/object:Gem::Version
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  version: '0'
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  requirements: []
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- rubygems_version: 3.1.4
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+ rubygems_version: 3.2.3
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  signing_key:
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  specification_version: 4
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  summary: Bayesian inference for Ruby, powered by CmdStan