cmdstan 0.1.5 → 0.1.6

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: f0438de041affa64ca7db73cd65f35b67a80a389d76ed70d73a294f877db0071
-  data.tar.gz: 06da4d0a6ca5f5a84d05c442ef860efc2b0f0d619645139dede04a924564c5c6
+  metadata.gz: 3b919404c064aa08c6766d3718c168f70ef422e32d66eebf6de84b901e244d2c
+  data.tar.gz: 70f11779bdb74a2d0ba2a95ba6ba37c05cd5e637422667474765f3bdbfca2efe
 SHA512:
-  metadata.gz: 86c6687ba6802f658b865f8f94a56d7f2bdc24abc5dc5606dc389b5fba2558648b1dc41b3b3762c4d38478caed95d47e35ba15a6434379af5d8f9eb5a1173f74
-  data.tar.gz: f52cc26a90504161e3f5df6848509a42341f0725e23936741447962f6777ea8706998870ee2d2b6e8c8efd50e08778678e45b9273ce4a7aabe848c54bbbd7ad2
+  metadata.gz: 1238805b583a22b5aef689a70ce0eba43a270e9a090ce531038ac8e93a2d386f202ff800ef80247cb118edf37ef06fe5a9230c9589070a8b6f5e463c6a19363d
+  data.tar.gz: 7e7c0cdf1b481a400844605eded2822d644eb441f85875bd65d9b91d856150dd40d9a83671d19d2693c28dbae4c17a4af3b07a336a133909c30f7fa9802b2b90

data/CHANGELOG.md

@@ -1,3 +1,7 @@
+## 0.1.6 (2021-02-08)
+
+- Updated CmdStan to 2.26.0
+
 ## 0.1.5 (2020-11-21)
 
 - Added `tbb` to path for Linux

data/LICENSE.txt

@@ -1,7 +1,7 @@
 BSD 3-Clause License
 
 Copyright (c) 2019, Stan Developers and their Assignees
-Copyright (c) 2020, Andrew Kane
+Copyright (c) 2020-2021, Andrew Kane
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without

data/ext/cmdstan/extconf.rb

@@ -3,8 +3,8 @@ require "fileutils"
 require "net/http"
 require "tmpdir"
 
-version = "2.25.0"
-checksum = "6bd90c6513d386f22007750f136c3f8db0132aa3e80c7298095516c68ab95a4a"
+version = "2.26.0"
+checksum = "0bc5529a4818e70ef8181191a515ea5e1a6fce326dda41a040f99deb89bcb663"
 url = "https://github.com/stan-dev/cmdstan/releases/download/v#{version}/cmdstan-#{version}.tar.gz"
 
 $stdout.sync = true

data/lib/cmdstan/mcmc.rb

@@ -25,11 +25,12 @@ module CmdStan
     end
 
     def summary
-      csv_file = Tempfile.new
-      run_command "#{CmdStan.path}/bin/stansummary#{extension}", "--csv_file=#{csv_file.path}", *@output_files.map(&:path)
+      # add suffix since path can't already exist
+      path = "#{Tempfile.new.path}.csv"
+      run_command "#{CmdStan.path}/bin/stansummary#{extension}", "--csv_filename=#{path}", *@output_files.map(&:path)
 
       result = {}
-      CSV.foreach(csv_file.path, headers: true, converters: :numeric) do |row|
+      CSV.foreach(path, headers: true, converters: :numeric) do |row|
         value = row.to_h
         name = value.delete("name")
         result[name] = value if name == "lp__" || !name.end_with?("__")

data/lib/cmdstan/model.rb

@@ -61,7 +61,7 @@ module CmdStan
         args << "num_samples=#{sampling_iters.to_i}" if sampling_iters
         args += ["algorithm=hmc", "adapt", "engaged=1"]
 
-        run_command *args
+        run_command(*args)
 
         output_files << output_file
       end
@@ -99,7 +99,7 @@ module CmdStan
       args << "algorithm=#{algorithm.to_s.downcase}" if algorithm
       args << "iter=#{iter.to_i}" if iter
 
-      run_command *args
+      run_command(*args)
 
       MLE.new(output_file)
     end

data/lib/cmdstan/version.rb

@@ -1,3 +1,3 @@
 module CmdStan
-  VERSION = "0.1.5"
+  VERSION = "0.1.6"
 end

metadata

@@ -1,59 +1,17 @@
 --- !ruby/object:Gem::Specification
 name: cmdstan
 version: !ruby/object:Gem::Version
-  version: 0.1.5
+  version: 0.1.6
 platform: ruby
 authors:
 - Andrew Kane
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2020-11-21 00:00:00.000000000 Z
-dependencies:
-- !ruby/object:Gem::Dependency
-  name: bundler
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-- !ruby/object:Gem::Dependency
-  name: rake
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '0'
-- !ruby/object:Gem::Dependency
-  name: minitest
-  requirement: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '5'
-  type: :development
-  prerelease: false
-  version_requirements: !ruby/object:Gem::Requirement
-    requirements:
-    - - ">="
-      - !ruby/object:Gem::Version
-        version: '5'
+date: 2021-02-08 00:00:00.000000000 Z
+dependencies: []
 description:
-email: andrew@chartkick.com
+email: andrew@ankane.org
 executables: []
 extensions:
 - ext/cmdstan/extconf.rb
@@ -89,7 +47,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.1.4
+rubygems_version: 3.2.3
 signing_key:
 specification_version: 4
 summary: Bayesian inference for Ruby, powered by CmdStan