charlie 0.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/History.txt +3 -0
- data/Manifest.txt +53 -0
- data/README.txt +90 -0
- data/Rakefile +43 -0
- data/TODO.txt +28 -0
- data/data/BENCHMARK +53 -0
- data/data/CROSSOVER +49 -0
- data/data/GENOTYPE +49 -0
- data/data/MUTATION +43 -0
- data/data/SELECTION +48 -0
- data/data/template.html +34 -0
- data/examples/bit.rb +10 -0
- data/examples/function_opt_2peak.rb +24 -0
- data/examples/function_opt_sombero.rb +38 -0
- data/examples/gladiatorial_simple.rb +17 -0
- data/examples/gladiatorial_sunburn.rb +89 -0
- data/examples/gridwalk.rb +29 -0
- data/examples/output/flattened_sombero.html +6400 -0
- data/examples/output/flattened_sombero2_.html +3576 -0
- data/examples/output/fopt1_dblopt.html +2160 -0
- data/examples/output/hill10.html +5816 -0
- data/examples/output/hill2.csv +24 -0
- data/examples/output/hill2.html +384 -0
- data/examples/output/royalroad1_report.html +1076 -0
- data/examples/output/royalroad2_report.html +1076 -0
- data/examples/output/royalroadquick_report.html +504 -0
- data/examples/output/tsp.html +632 -0
- data/examples/output/weasel1_report.html +1076 -0
- data/examples/output/weasel2_report.html +240 -0
- data/examples/royalroad.rb +26 -0
- data/examples/royalroad2.rb +18 -0
- data/examples/simple_climb_hill2.rb +47 -0
- data/examples/tsp.rb +35 -0
- data/examples/weasel.rb +36 -0
- data/lib/charlie.rb +35 -0
- data/lib/charlie/crossover.rb +49 -0
- data/lib/charlie/etc/minireport.rb +45 -0
- data/lib/charlie/etc/monkey.rb +136 -0
- data/lib/charlie/genotype.rb +45 -0
- data/lib/charlie/list/list_crossover.rb +30 -0
- data/lib/charlie/list/list_genotype.rb +53 -0
- data/lib/charlie/list/list_mutate.rb +75 -0
- data/lib/charlie/mutate.rb +25 -0
- data/lib/charlie/permutation/permutation.rb +47 -0
- data/lib/charlie/population.rb +156 -0
- data/lib/charlie/selection.rb +162 -0
- data/test/t_common.rb +32 -0
- data/test/test_basic.rb +32 -0
- data/test/test_benchmark.rb +56 -0
- data/test/test_cross.rb +28 -0
- data/test/test_mutator.rb +44 -0
- data/test/test_permutation.rb +23 -0
- data/test/test_sel.rb +39 -0
- metadata +115 -0
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
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<meta http-equiv="content-type" content="text/html;charset=UTF-8" />
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<title>GA Benchmark Report</title>
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</script>
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</head>
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<body>
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<h1>Information</h1>
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<table>
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<tr><td>Genotype class</td><td>RoyalRoad</td></tr>
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<tr><td>Population size</td><td>20</td></tr>
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<tr><td># of generations per run</td><td>100</td></tr>
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<tr><td>Number of tests </td><td>36</td></tr>
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<tr><td>Tests repeated </td><td>50 times</td></tr>
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<tr><td>Number of runs </td><td>1800</td></tr>
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<tr><td>Total number of generations </td><td>180000</td></tr>
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<tr><td>Total time</td><td>3276.91 seconds</td></tr>
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</table
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<h1>Stats for all</h1><table>
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<tr><th>.</th><th>min</th><th>max</th><th>avg</th><th>stddev</th><th>avg-time</th></tr>
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<tr>
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<td>All</td>
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<td>0.00000</td>
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<td>7.00000</td>
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<td>2.96111</td>
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<td>1.35468</td>
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<td>1.82050</td>
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</tr>
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</table><h1>Stats for selection</h1><table>
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<tr><th>selection</th><th>min</th><th>max</th><th>avg</th><th>stddev</th><th>avg-time</th></tr>
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<tr>
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<td>TournamentSelection(4,nil)</td>
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<td>0.00000</td>
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<td>7.00000</td>
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<td>4.21167</td>
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<td>1.16485</td>
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<td>1.54524</td>
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</tr>
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<tr>
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<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
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<td>0.00000</td>
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<td>5.00000</td>
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<td>2.40500</td>
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<td>0.88184</td>
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<td>1.79987</td>
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</tr>
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<tr>
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<td>TruncationSelection(0.3)</td>
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<td>0.00000</td>
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<td>6.00000</td>
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<td>2.26667</td>
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<td>1.00775</td>
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<td>2.11639</td>
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</tr>
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</table><h1>Stats for crossover</h1><table>
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<tr><th>crossover</th><th>min</th><th>max</th><th>avg</th><th>stddev</th><th>avg-time</th></tr>
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<tr>
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<td>UniformCrossover</td>
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<td>0.00000</td>
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<td>7.00000</td>
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<td>3.08000</td>
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<td>1.37042</td>
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<td>1.93908</td>
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</tr>
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<tr>
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<td>SingleChild(UniformCrossover)</td>
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<td>0.00000</td>
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<td>6.00000</td>
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<td>3.05556</td>
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<td>1.32465</td>
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<td>1.91963</td>
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</tr>
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<tr>
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<td>PCross(0.75,UniformCrossover,NullCrossover)</td>
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<td>0.00000</td>
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<td>6.00000</td>
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<td>2.90889</td>
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<td>1.34599</td>
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<td>1.64149</td>
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</tr>
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<tr>
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<td>SinglePointCrossover</td>
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<td>0.00000</td>
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<td>7.00000</td>
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<td>2.80000</td>
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<td>1.35810</td>
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<td>1.78179</td>
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</tr>
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</table><h1>Stats for mutation</h1><table>
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<tr><th>mutation</th><th>min</th><th>max</th><th>avg</th><th>stddev</th><th>avg-time</th></tr>
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<tr>
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<td>ListMutator([:expected_n, 3],:flip)</td>
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<td>0.00000</td>
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<td>7.00000</td>
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<td>3.24500</td>
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<td>1.30447</td>
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<td>1.78685</td>
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</tr>
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<tr>
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<td>ListMutator([:expected_n, 2],:flip)</td>
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<td>1.00000</td>
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<td>7.00000</td>
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<td>3.13167</td>
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<td>1.38480</td>
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<td>1.86117</td>
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</tr>
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<tr>
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<td>ListMutator([:expected_n, 1],:flip)</td>
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<td>0.00000</td>
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<td>7.00000</td>
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<td>2.50667</td>
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<td>1.25298</td>
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<td>1.81348</td>
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</tr>
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</table><h1>Raw Stats</h1><table>
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<tr><th>selection</th><th>crossover</th><th>mutation</th><th>min</th><th>max</th><th>avg</th><th>stddev</th><th>avg-time</th></tr>
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<tr>
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<td>TournamentSelection(4,nil)</td>
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<td>UniformCrossover</td>
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<td>ListMutator([:expected_n, 3],:flip)</td>
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<td>3.00000</td>
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<td>7.00000</td>
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<td>4.90000</td>
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<td>0.80623</td>
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<td>1.51403</td>
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</tr>
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<tr>
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<td>TournamentSelection(4,nil)</td>
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<td>SingleChild(UniformCrossover)</td>
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<td>ListMutator([:expected_n, 2],:flip)</td>
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<td>3.00000</td>
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<td>6.00000</td>
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<td>4.68000</td>
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<td>0.85884</td>
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<td>1.81968</td>
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</tr>
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<tr>
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<td>TournamentSelection(4,nil)</td>
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<td>UniformCrossover</td>
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<td>ListMutator([:expected_n, 2],:flip)</td>
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<td>3.00000</td>
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<td>7.00000</td>
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<td>4.60000</td>
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<td>1.11355</td>
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<td>1.56651</td>
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</tr>
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<tr>
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<td>TournamentSelection(4,nil)</td>
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<td>PCross(0.75,UniformCrossover,NullCrossover)</td>
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<td>ListMutator([:expected_n, 3],:flip)</td>
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<td>3.00000</td>
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<td>6.00000</td>
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<td>4.60000</td>
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<td>0.87178</td>
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<td>1.37833</td>
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</tr>
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<tr>
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<td>TournamentSelection(4,nil)</td>
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<td>SingleChild(UniformCrossover)</td>
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<td>ListMutator([:expected_n, 3],:flip)</td>
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<td>3.00000</td>
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<td>6.00000</td>
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<td>4.60000</td>
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<td>0.77460</td>
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<td>1.94023</td>
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</tr>
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<tr>
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<td>TournamentSelection(4,nil)</td>
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<td>PCross(0.75,UniformCrossover,NullCrossover)</td>
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<td>ListMutator([:expected_n, 2],:flip)</td>
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<td>2.00000</td>
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<td>6.00000</td>
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<td>4.58000</td>
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<td>0.89644</td>
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<td>1.59108</td>
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</tr>
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<tr>
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<td>TournamentSelection(4,nil)</td>
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<td>SinglePointCrossover</td>
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<td>ListMutator([:expected_n, 3],:flip)</td>
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<td>2.00000</td>
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<td>7.00000</td>
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<td>4.44000</td>
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<td>1.06132</td>
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<td>1.32623</td>
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</tr>
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<td>TournamentSelection(4,nil)</td>
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<td>SinglePointCrossover</td>
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<td>ListMutator([:expected_n, 2],:flip)</td>
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<td>1.00000</td>
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<td>7.00000</td>
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<td>4.02000</td>
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<td>1.19147</td>
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<td>1.47279</td>
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</tr>
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<td>TournamentSelection(4,nil)</td>
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<td>UniformCrossover</td>
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<td>ListMutator([:expected_n, 1],:flip)</td>
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<td>1.00000</td>
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<td>6.00000</td>
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<td>3.74000</td>
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<td>1.11014</td>
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<td>1.43963</td>
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</tr>
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<td>TournamentSelection(4,nil)</td>
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<td>SingleChild(UniformCrossover)</td>
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<td>ListMutator([:expected_n, 1],:flip)</td>
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<td>0.00000</td>
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<td>6.00000</td>
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<td>3.62000</td>
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<td>1.21474</td>
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<td>1.76231</td>
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</tr>
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<tr>
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<td>TournamentSelection(4,nil)</td>
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<td>PCross(0.75,UniformCrossover,NullCrossover)</td>
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<td>ListMutator([:expected_n, 1],:flip)</td>
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<td>1.00000</td>
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<td>6.00000</td>
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<td>3.48000</td>
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<td>1.06283</td>
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<td>1.36237</td>
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</tr>
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<tr>
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<td>TournamentSelection(4,nil)</td>
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<td>SinglePointCrossover</td>
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<td>ListMutator([:expected_n, 1],:flip)</td>
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<td>1.00000</td>
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<td>7.00000</td>
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<td>3.28000</td>
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<td>1.32725</td>
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<td>1.36968</td>
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</tr>
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<tr>
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<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
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|
+
<td>SinglePointCrossover</td>
|
|
265
|
+
<td>ListMutator([:expected_n, 2],:flip)</td>
|
|
266
|
+
<td>1.00000</td>
|
|
267
|
+
<td>5.00000</td>
|
|
268
|
+
<td>2.88000</td>
|
|
269
|
+
<td>0.93038</td>
|
|
270
|
+
<td>2.00299</td>
|
|
271
|
+
</tr>
|
|
272
|
+
<tr>
|
|
273
|
+
<td>TruncationSelection(0.3)</td>
|
|
274
|
+
<td>SingleChild(UniformCrossover)</td>
|
|
275
|
+
<td>ListMutator([:expected_n, 3],:flip)</td>
|
|
276
|
+
<td>1.00000</td>
|
|
277
|
+
<td>5.00000</td>
|
|
278
|
+
<td>2.78000</td>
|
|
279
|
+
<td>0.90089</td>
|
|
280
|
+
<td>2.03387</td>
|
|
281
|
+
</tr>
|
|
282
|
+
<tr>
|
|
283
|
+
<td>TruncationSelection(0.3)</td>
|
|
284
|
+
<td>UniformCrossover</td>
|
|
285
|
+
<td>ListMutator([:expected_n, 3],:flip)</td>
|
|
286
|
+
<td>1.00000</td>
|
|
287
|
+
<td>6.00000</td>
|
|
288
|
+
<td>2.72000</td>
|
|
289
|
+
<td>1.02059</td>
|
|
290
|
+
<td>2.39684</td>
|
|
291
|
+
</tr>
|
|
292
|
+
<tr>
|
|
293
|
+
<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
|
|
294
|
+
<td>PCross(0.75,UniformCrossover,NullCrossover)</td>
|
|
295
|
+
<td>ListMutator([:expected_n, 3],:flip)</td>
|
|
296
|
+
<td>1.00000</td>
|
|
297
|
+
<td>4.00000</td>
|
|
298
|
+
<td>2.64000</td>
|
|
299
|
+
<td>0.71442</td>
|
|
300
|
+
<td>1.46189</td>
|
|
301
|
+
</tr>
|
|
302
|
+
<tr>
|
|
303
|
+
<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
|
|
304
|
+
<td>UniformCrossover</td>
|
|
305
|
+
<td>ListMutator([:expected_n, 2],:flip)</td>
|
|
306
|
+
<td>1.00000</td>
|
|
307
|
+
<td>4.00000</td>
|
|
308
|
+
<td>2.56000</td>
|
|
309
|
+
<td>0.92000</td>
|
|
310
|
+
<td>1.91380</td>
|
|
311
|
+
</tr>
|
|
312
|
+
<tr>
|
|
313
|
+
<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
|
|
314
|
+
<td>SinglePointCrossover</td>
|
|
315
|
+
<td>ListMutator([:expected_n, 3],:flip)</td>
|
|
316
|
+
<td>1.00000</td>
|
|
317
|
+
<td>4.00000</td>
|
|
318
|
+
<td>2.54000</td>
|
|
319
|
+
<td>0.63906</td>
|
|
320
|
+
<td>2.28756</td>
|
|
321
|
+
</tr>
|
|
322
|
+
<tr>
|
|
323
|
+
<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
|
|
324
|
+
<td>SingleChild(UniformCrossover)</td>
|
|
325
|
+
<td>ListMutator([:expected_n, 3],:flip)</td>
|
|
326
|
+
<td>1.00000</td>
|
|
327
|
+
<td>4.00000</td>
|
|
328
|
+
<td>2.54000</td>
|
|
329
|
+
<td>0.63906</td>
|
|
330
|
+
<td>1.86339</td>
|
|
331
|
+
</tr>
|
|
332
|
+
<tr>
|
|
333
|
+
<td>TruncationSelection(0.3)</td>
|
|
334
|
+
<td>UniformCrossover</td>
|
|
335
|
+
<td>ListMutator([:expected_n, 2],:flip)</td>
|
|
336
|
+
<td>1.00000</td>
|
|
337
|
+
<td>4.00000</td>
|
|
338
|
+
<td>2.54000</td>
|
|
339
|
+
<td>0.82970</td>
|
|
340
|
+
<td>2.37022</td>
|
|
341
|
+
</tr>
|
|
342
|
+
<tr>
|
|
343
|
+
<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
|
|
344
|
+
<td>UniformCrossover</td>
|
|
345
|
+
<td>ListMutator([:expected_n, 3],:flip)</td>
|
|
346
|
+
<td>1.00000</td>
|
|
347
|
+
<td>4.00000</td>
|
|
348
|
+
<td>2.50000</td>
|
|
349
|
+
<td>0.72801</td>
|
|
350
|
+
<td>1.53284</td>
|
|
351
|
+
</tr>
|
|
352
|
+
<tr>
|
|
353
|
+
<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
|
|
354
|
+
<td>SingleChild(UniformCrossover)</td>
|
|
355
|
+
<td>ListMutator([:expected_n, 2],:flip)</td>
|
|
356
|
+
<td>1.00000</td>
|
|
357
|
+
<td>5.00000</td>
|
|
358
|
+
<td>2.48000</td>
|
|
359
|
+
<td>0.85417</td>
|
|
360
|
+
<td>1.86124</td>
|
|
361
|
+
</tr>
|
|
362
|
+
<tr>
|
|
363
|
+
<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
|
|
364
|
+
<td>PCross(0.75,UniformCrossover,NullCrossover)</td>
|
|
365
|
+
<td>ListMutator([:expected_n, 2],:flip)</td>
|
|
366
|
+
<td>1.00000</td>
|
|
367
|
+
<td>4.00000</td>
|
|
368
|
+
<td>2.44000</td>
|
|
369
|
+
<td>0.77872</td>
|
|
370
|
+
<td>1.40028</td>
|
|
371
|
+
</tr>
|
|
372
|
+
<tr>
|
|
373
|
+
<td>TruncationSelection(0.3)</td>
|
|
374
|
+
<td>SingleChild(UniformCrossover)</td>
|
|
375
|
+
<td>ListMutator([:expected_n, 2],:flip)</td>
|
|
376
|
+
<td>1.00000</td>
|
|
377
|
+
<td>5.00000</td>
|
|
378
|
+
<td>2.44000</td>
|
|
379
|
+
<td>1.09836</td>
|
|
380
|
+
<td>2.11516</td>
|
|
381
|
+
</tr>
|
|
382
|
+
<tr>
|
|
383
|
+
<td>TruncationSelection(0.3)</td>
|
|
384
|
+
<td>SinglePointCrossover</td>
|
|
385
|
+
<td>ListMutator([:expected_n, 3],:flip)</td>
|
|
386
|
+
<td>0.00000</td>
|
|
387
|
+
<td>5.00000</td>
|
|
388
|
+
<td>2.40000</td>
|
|
389
|
+
<td>0.91652</td>
|
|
390
|
+
<td>2.02960</td>
|
|
391
|
+
</tr>
|
|
392
|
+
<tr>
|
|
393
|
+
<td>TruncationSelection(0.3)</td>
|
|
394
|
+
<td>PCross(0.75,UniformCrossover,NullCrossover)</td>
|
|
395
|
+
<td>ListMutator([:expected_n, 3],:flip)</td>
|
|
396
|
+
<td>1.00000</td>
|
|
397
|
+
<td>4.00000</td>
|
|
398
|
+
<td>2.28000</td>
|
|
399
|
+
<td>0.91739</td>
|
|
400
|
+
<td>1.67735</td>
|
|
401
|
+
</tr>
|
|
402
|
+
<tr>
|
|
403
|
+
<td>TruncationSelection(0.3)</td>
|
|
404
|
+
<td>PCross(0.75,UniformCrossover,NullCrossover)</td>
|
|
405
|
+
<td>ListMutator([:expected_n, 2],:flip)</td>
|
|
406
|
+
<td>1.00000</td>
|
|
407
|
+
<td>5.00000</td>
|
|
408
|
+
<td>2.24000</td>
|
|
409
|
+
<td>1.08738</td>
|
|
410
|
+
<td>2.26213</td>
|
|
411
|
+
</tr>
|
|
412
|
+
<tr>
|
|
413
|
+
<td>TruncationSelection(0.3)</td>
|
|
414
|
+
<td>SingleChild(UniformCrossover)</td>
|
|
415
|
+
<td>ListMutator([:expected_n, 1],:flip)</td>
|
|
416
|
+
<td>1.00000</td>
|
|
417
|
+
<td>4.00000</td>
|
|
418
|
+
<td>2.20000</td>
|
|
419
|
+
<td>0.82462</td>
|
|
420
|
+
<td>2.05069</td>
|
|
421
|
+
</tr>
|
|
422
|
+
<tr>
|
|
423
|
+
<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
|
|
424
|
+
<td>UniformCrossover</td>
|
|
425
|
+
<td>ListMutator([:expected_n, 1],:flip)</td>
|
|
426
|
+
<td>0.00000</td>
|
|
427
|
+
<td>4.00000</td>
|
|
428
|
+
<td>2.16000</td>
|
|
429
|
+
<td>0.80895</td>
|
|
430
|
+
<td>2.36203</td>
|
|
431
|
+
</tr>
|
|
432
|
+
<tr>
|
|
433
|
+
<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
|
|
434
|
+
<td>SingleChild(UniformCrossover)</td>
|
|
435
|
+
<td>ListMutator([:expected_n, 1],:flip)</td>
|
|
436
|
+
<td>0.00000</td>
|
|
437
|
+
<td>5.00000</td>
|
|
438
|
+
<td>2.16000</td>
|
|
439
|
+
<td>1.10200</td>
|
|
440
|
+
<td>1.83014</td>
|
|
441
|
+
</tr>
|
|
442
|
+
<tr>
|
|
443
|
+
<td>TruncationSelection(0.3)</td>
|
|
444
|
+
<td>SinglePointCrossover</td>
|
|
445
|
+
<td>ListMutator([:expected_n, 2],:flip)</td>
|
|
446
|
+
<td>1.00000</td>
|
|
447
|
+
<td>5.00000</td>
|
|
448
|
+
<td>2.12000</td>
|
|
449
|
+
<td>1.14263</td>
|
|
450
|
+
<td>1.95818</td>
|
|
451
|
+
</tr>
|
|
452
|
+
<tr>
|
|
453
|
+
<td>TruncationSelection(0.3)</td>
|
|
454
|
+
<td>UniformCrossover</td>
|
|
455
|
+
<td>ListMutator([:expected_n, 1],:flip)</td>
|
|
456
|
+
<td>1.00000</td>
|
|
457
|
+
<td>5.00000</td>
|
|
458
|
+
<td>2.00000</td>
|
|
459
|
+
<td>0.95917</td>
|
|
460
|
+
<td>2.35582</td>
|
|
461
|
+
</tr>
|
|
462
|
+
<tr>
|
|
463
|
+
<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
|
|
464
|
+
<td>PCross(0.75,UniformCrossover,NullCrossover)</td>
|
|
465
|
+
<td>ListMutator([:expected_n, 1],:flip)</td>
|
|
466
|
+
<td>0.00000</td>
|
|
467
|
+
<td>4.00000</td>
|
|
468
|
+
<td>2.00000</td>
|
|
469
|
+
<td>0.95917</td>
|
|
470
|
+
<td>1.37467</td>
|
|
471
|
+
</tr>
|
|
472
|
+
<tr>
|
|
473
|
+
<td>Elitism(ScaledRouletteSelection[1,2,3,4,...],1)</td>
|
|
474
|
+
<td>SinglePointCrossover</td>
|
|
475
|
+
<td>ListMutator([:expected_n, 1],:flip)</td>
|
|
476
|
+
<td>0.00000</td>
|
|
477
|
+
<td>4.00000</td>
|
|
478
|
+
<td>1.96000</td>
|
|
479
|
+
<td>0.89353</td>
|
|
480
|
+
<td>1.70761</td>
|
|
481
|
+
</tr>
|
|
482
|
+
<tr>
|
|
483
|
+
<td>TruncationSelection(0.3)</td>
|
|
484
|
+
<td>PCross(0.75,UniformCrossover,NullCrossover)</td>
|
|
485
|
+
<td>ListMutator([:expected_n, 1],:flip)</td>
|
|
486
|
+
<td>1.00000</td>
|
|
487
|
+
<td>4.00000</td>
|
|
488
|
+
<td>1.92000</td>
|
|
489
|
+
<td>0.79599</td>
|
|
490
|
+
<td>2.26532</td>
|
|
491
|
+
</tr>
|
|
492
|
+
<tr>
|
|
493
|
+
<td>TruncationSelection(0.3)</td>
|
|
494
|
+
<td>SinglePointCrossover</td>
|
|
495
|
+
<td>ListMutator([:expected_n, 1],:flip)</td>
|
|
496
|
+
<td>0.00000</td>
|
|
497
|
+
<td>3.00000</td>
|
|
498
|
+
<td>1.56000</td>
|
|
499
|
+
<td>0.85229</td>
|
|
500
|
+
<td>1.88150</td>
|
|
501
|
+
</tr>
|
|
502
|
+
</table>
|
|
503
|
+
</body>
|
|
504
|
+
</html>
|