caruby-core 1.5.5 → 2.1.1

data/test/lib/caruby/util/weak_hash_test.rb

@@ -1,45 +0,0 @@
-$:.unshift 'lib'
-$:.unshift 'examples/clinical_trials/lib'
-
-require 'caruby/util/log'
-CaRuby::Log.instance.open('test/results/log/clinical_trials.log', :shift_age => 10, :shift_size => 1048576, :debug => true)
-
-require 'caruby/util/weak_hash'
-require 'clinical_trials'
-require File.join(File.dirname(__FILE__), '..', 'test_case')
-
-class WeakHashTest < Test::Unit::TestCase
-   def setup
-    @hash = CaRuby::WeakHash.new
-  end
-
-  def test_accessors
-    study = ClinicalTrials::Study.new(:identifier => 1)
-    @hash[1] = study
-    assert_equal(study, @hash[1], "Value not found for key")
-  end
-
-  def test_each
-    study = ClinicalTrials::Study.new(:identifier => 1)
-    @hash[1] = study
-    assert_equal([[1, study]], @hash.to_a, "Weak hash enumeration incorrect")
-  end
-
-  # Verify that a strongly referenced hash entry is not reclaimed and weakly referenced entries are
-  # eventually reclaimend.
-  def test_stress
-    # a strongly referenced entry
-    pinned = @hash[1] = ClinicalTrials::Study.new(:identifier => 1)
-    # make weakly referenced entries until one is reclaimed
-    2.upto(1000000) do |n|
-      @hash[n] = ClinicalTrials::Study.new(:identifier => n)
-      # the strongly referenced entry should always be retained.
-      # note that the test fails if the reference is @hash[1]. jRuby or Java probably
-      # optimize @hash[1] into a strong reference, but not @hash[pinned.identifier].
-      assert_not_nil(@hash[pinned.identifier], "Strongly referenced hash entry reclaimed")
-      # done when the second entry is reclaimed
-      return unless @hash[2]
-    end
-    fail("Weak hash entries not garbage-collected after 1,000,000 entries")
-  end
-end

data/test/lib/examples/clinical_trials/migration/migration_test.rb

@@ -1,58 +0,0 @@
-require 'test/lib/caruby/migration/test_case'
-require 'examples/clinical_trials/lib/clinical_trials'
-
-module ClinicalTrials
-  # Tests the ClinicalTrials example migration.
-  class MigrationTest < Test::Unit::TestCase
-    include CaRuby::MigrationTestCase
-    
-    def setup
-      super(FIXTURES)
-    end
-    
-#    def test_subject
-#      verify_target(:subject, :target => ClinicalTrials::Subject, :mapping=> SUBJECT_MAPPING) do |sbj|
-#        assert_not_nil(sbj.ssn, "Missing SSN")
-#      end
-#    end
-#    
-#    def test_ssn_filter
-#      verify_target(:ssn_filter, :target => ClinicalTrials::Subject, :mapping=> SUBJECT_MAPPING, :shims => SSN_SHIMS) do |sbj|
-#        assert_not_nil(sbj.ssn, "Missing SSN")
-#      end
-#    end
-    
-    def test_activity_filter
-      verify_target(:activity_filter, :target => ClinicalTrials::Study, :mapping=> STUDY_MAPPING, :defaults => STUDY_DEFAULTS, :filters => STUDY_FILTERS) do |std|
-        expected = std.name.split(' ').first
-        assert_equal(expected, std.activity_status, "Incorrect activity status")
-      end
-    end
-    
-    private
-    
-    # The migration input data directory.
-    FIXTURES = 'examples/clinical_trials/data'
-  
-    # The migration input shim directory.
-    SHIMS = 'examples/clinical_trials/lib/clinical_trials/migration'
-    
-    # The migration configuration directory.
-    CONFIGS = 'examples/clinical_trials/conf/migration'
-    
-    # The subject input file.
-    SUBJECT_MAPPING = File.join(CONFIGS, "subject_fields.yaml")
-    
-    # The study input file.
-    STUDY_MAPPING = File.join(CONFIGS, "study_fields.yaml")
-    
-    # The study default values.
-    STUDY_DEFAULTS = File.join(CONFIGS, "study_defaults.yaml")
-    
-    # The study default values.
-    STUDY_FILTERS = File.join(CONFIGS, "study_filters.yaml")
-    
-    # The filter shims file.
-    SSN_SHIMS = File.join(SHIMS, "ssn_shim.rb")
-  end
-end

data/test/lib/examples/clinical_trials/migration/test_case.rb

@@ -1,38 +0,0 @@
-require 'test/lib/caruby/migration/test_case'
-require 'examples/clinical_trials/lib/clinical_trials'
-
-# Tests the ClinicalTrials example migration.
-module ClinicalTrials
-  module MigrationTestCase
-    include CaRuby::MigrationTestCase
-    
-    def setup
-      super(FIXTURES)
-    end
-    
-    # Adds the +:target+, +:mapping+ and +:shims+ to the options and delegates
-    # to the superclass.
-    #
-    # @see {CaTissue::MigrationTestCase#create_migrator}
-    def create_migrator(fixture, opts={})
-      opts[:mapping] ||= File.join(CONFIGS, "#{fixture}_fields.yaml")
-      shims = File.join(SHIMS, "#{fixture}_shims.rb")
-      if File.exists?(shims) then
-        sopt = opts[:shims] ||= []
-        sopt << shims
-      end
-      super
-    end
-    
-    private
-    
-    # The migration input data directory.
-    FIXTURES = 'examples/clinical_trials/data'
-  
-    # The migration input shim directory.
-    SHIMS = 'examples/clinical_trials/lib/clinical_trials/migration'
-    
-    # The migration configuration directory.
-    CONFIGS = 'examples/clinical_trials/conf/migration'
-  end
-end