caruby-core 1.5.5 → 2.1.1

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Files changed (126) hide show
  1. data/Gemfile +9 -0
  2. data/History.md +5 -1
  3. data/lib/caruby.rb +3 -5
  4. data/lib/caruby/caruby-src.tar.gz +0 -0
  5. data/lib/caruby/database.rb +53 -69
  6. data/lib/caruby/database/application_service.rb +25 -0
  7. data/lib/caruby/database/cache.rb +60 -0
  8. data/lib/caruby/database/fetched_matcher.rb +52 -38
  9. data/lib/caruby/database/lazy_loader.rb +4 -4
  10. data/lib/caruby/database/operation.rb +34 -0
  11. data/lib/caruby/database/persistable.rb +171 -86
  12. data/lib/caruby/database/persistence_service.rb +32 -34
  13. data/lib/caruby/database/persistifier.rb +100 -43
  14. data/lib/caruby/database/reader.rb +107 -85
  15. data/lib/caruby/database/reader_template_builder.rb +60 -0
  16. data/lib/caruby/database/saved_matcher.rb +3 -3
  17. data/lib/caruby/database/sql_executor.rb +88 -17
  18. data/lib/caruby/database/writer.rb +213 -177
  19. data/lib/caruby/database/writer_template_builder.rb +334 -0
  20. data/lib/caruby/{util → helpers}/controlled_value.rb +0 -0
  21. data/lib/caruby/{util → helpers}/coordinate.rb +4 -4
  22. data/lib/caruby/{util → helpers}/person.rb +3 -3
  23. data/lib/caruby/{util → helpers}/properties.rb +7 -9
  24. data/lib/caruby/{util → helpers}/roman.rb +2 -2
  25. data/lib/caruby/{util → helpers}/version.rb +1 -1
  26. data/lib/caruby/json/deserializer.rb +2 -2
  27. data/lib/caruby/json/serializer.rb +49 -7
  28. data/lib/caruby/metadata.rb +30 -0
  29. data/lib/caruby/metadata/java_property.rb +21 -0
  30. data/lib/caruby/metadata/propertied.rb +191 -0
  31. data/lib/caruby/metadata/property.rb +22 -0
  32. data/lib/caruby/metadata/property_characteristics.rb +201 -0
  33. data/lib/caruby/migration/migratable.rb +11 -182
  34. data/lib/caruby/rdbi/driver/jdbc.rb +446 -0
  35. data/lib/caruby/resource.rb +20 -823
  36. data/lib/caruby/version.rb +1 -1
  37. data/test/lib/caruby/database/cache_test.rb +54 -0
  38. data/test/lib/caruby/{util → helpers}/controlled_value_test.rb +3 -5
  39. data/test/lib/caruby/{util → helpers}/person_test.rb +4 -6
  40. data/test/lib/caruby/helpers/properties_test.rb +34 -0
  41. data/test/lib/caruby/{util → helpers}/roman_test.rb +2 -3
  42. data/test/lib/caruby/{util → helpers}/version_test.rb +2 -3
  43. data/test/lib/helper.rb +7 -0
  44. metadata +161 -214
  45. data/lib/caruby/cli/application.rb +0 -36
  46. data/lib/caruby/cli/command.rb +0 -202
  47. data/lib/caruby/csv/csv_mapper.rb +0 -159
  48. data/lib/caruby/csv/csvio.rb +0 -203
  49. data/lib/caruby/database/search_template_builder.rb +0 -56
  50. data/lib/caruby/database/store_template_builder.rb +0 -278
  51. data/lib/caruby/domain.rb +0 -193
  52. data/lib/caruby/domain/attribute.rb +0 -584
  53. data/lib/caruby/domain/attributes.rb +0 -628
  54. data/lib/caruby/domain/dependency.rb +0 -225
  55. data/lib/caruby/domain/id_alias.rb +0 -22
  56. data/lib/caruby/domain/importer.rb +0 -183
  57. data/lib/caruby/domain/introspection.rb +0 -176
  58. data/lib/caruby/domain/inverse.rb +0 -172
  59. data/lib/caruby/domain/inversible.rb +0 -90
  60. data/lib/caruby/domain/java_attribute.rb +0 -173
  61. data/lib/caruby/domain/merge.rb +0 -185
  62. data/lib/caruby/domain/metadata.rb +0 -142
  63. data/lib/caruby/domain/mixin.rb +0 -35
  64. data/lib/caruby/domain/properties.rb +0 -95
  65. data/lib/caruby/domain/reference_visitor.rb +0 -428
  66. data/lib/caruby/domain/uniquify.rb +0 -50
  67. data/lib/caruby/import/java.rb +0 -387
  68. data/lib/caruby/migration/migrator.rb +0 -918
  69. data/lib/caruby/migration/resource_module.rb +0 -9
  70. data/lib/caruby/migration/uniquify.rb +0 -17
  71. data/lib/caruby/util/attribute_path.rb +0 -44
  72. data/lib/caruby/util/cache.rb +0 -56
  73. data/lib/caruby/util/class.rb +0 -149
  74. data/lib/caruby/util/collection.rb +0 -1152
  75. data/lib/caruby/util/domain_extent.rb +0 -46
  76. data/lib/caruby/util/file_separator.rb +0 -65
  77. data/lib/caruby/util/inflector.rb +0 -27
  78. data/lib/caruby/util/log.rb +0 -95
  79. data/lib/caruby/util/math.rb +0 -12
  80. data/lib/caruby/util/merge.rb +0 -59
  81. data/lib/caruby/util/module.rb +0 -18
  82. data/lib/caruby/util/options.rb +0 -97
  83. data/lib/caruby/util/partial_order.rb +0 -35
  84. data/lib/caruby/util/pretty_print.rb +0 -204
  85. data/lib/caruby/util/stopwatch.rb +0 -74
  86. data/lib/caruby/util/topological_sync_enumerator.rb +0 -62
  87. data/lib/caruby/util/transitive_closure.rb +0 -55
  88. data/lib/caruby/util/tree.rb +0 -48
  89. data/lib/caruby/util/trie.rb +0 -37
  90. data/lib/caruby/util/uniquifier.rb +0 -30
  91. data/lib/caruby/util/validation.rb +0 -20
  92. data/lib/caruby/util/visitor.rb +0 -365
  93. data/lib/caruby/util/weak_hash.rb +0 -36
  94. data/test/lib/caruby/csv/csv_mapper_test.rb +0 -40
  95. data/test/lib/caruby/csv/csvio_test.rb +0 -69
  96. data/test/lib/caruby/database/persistable_test.rb +0 -92
  97. data/test/lib/caruby/domain/domain_test.rb +0 -112
  98. data/test/lib/caruby/domain/inversible_test.rb +0 -99
  99. data/test/lib/caruby/domain/reference_visitor_test.rb +0 -130
  100. data/test/lib/caruby/import/java_test.rb +0 -80
  101. data/test/lib/caruby/import/mixed_case_test.rb +0 -14
  102. data/test/lib/caruby/migration/test_case.rb +0 -102
  103. data/test/lib/caruby/test_case.rb +0 -230
  104. data/test/lib/caruby/util/cache_test.rb +0 -23
  105. data/test/lib/caruby/util/class_test.rb +0 -61
  106. data/test/lib/caruby/util/collection_test.rb +0 -398
  107. data/test/lib/caruby/util/command_test.rb +0 -55
  108. data/test/lib/caruby/util/domain_extent_test.rb +0 -60
  109. data/test/lib/caruby/util/file_separator_test.rb +0 -30
  110. data/test/lib/caruby/util/inflector_test.rb +0 -12
  111. data/test/lib/caruby/util/lazy_hash_test.rb +0 -34
  112. data/test/lib/caruby/util/merge_test.rb +0 -83
  113. data/test/lib/caruby/util/module_test.rb +0 -25
  114. data/test/lib/caruby/util/options_test.rb +0 -59
  115. data/test/lib/caruby/util/partial_order_test.rb +0 -42
  116. data/test/lib/caruby/util/pretty_print_test.rb +0 -85
  117. data/test/lib/caruby/util/properties_test.rb +0 -50
  118. data/test/lib/caruby/util/stopwatch_test.rb +0 -18
  119. data/test/lib/caruby/util/topological_sync_enumerator_test.rb +0 -69
  120. data/test/lib/caruby/util/transitive_closure_test.rb +0 -67
  121. data/test/lib/caruby/util/tree_test.rb +0 -23
  122. data/test/lib/caruby/util/trie_test.rb +0 -14
  123. data/test/lib/caruby/util/visitor_test.rb +0 -278
  124. data/test/lib/caruby/util/weak_hash_test.rb +0 -45
  125. data/test/lib/examples/clinical_trials/migration/migration_test.rb +0 -58
  126. data/test/lib/examples/clinical_trials/migration/test_case.rb +0 -38
@@ -1,204 +0,0 @@
1
- require 'set'
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- require 'date'
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- require 'pp'
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- require 'stringio'
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- require 'caruby/util/options'
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- require 'caruby/util/collection'
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- require 'caruby/util/inflector'
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-
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- class PrettyPrint
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- # The standard +prettyprint+ gem SingleLine is adjusted to add an output accessor and an optional output argument to {#initialize}.
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- class SingleLine
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- # @return [String] the print target
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- attr_reader :output
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-
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- alias :base__initialize :initialize
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- private :base__initialize
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-
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- # Overrides the standard SingleLine initializer to supply an output parameter default.
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- def initialize(output='', maxwidth=nil, newline=nil)
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- base__initialize(output, maxwidth, newline)
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- end
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- end
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- end
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-
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- # A PrintWrapper prints arguments by calling a printer proc.
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- class PrintWrapper < Proc
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- # Creates a new PrintWrapper on the given arguments.
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- def initialize(*args)
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- super()
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- @args = args
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- end
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-
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- # @param args this wrapper's print block parameters
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- # @return [PrintWrapper] self
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- def wrap(*args)
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- @args = args
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- self
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- end
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-
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- # Calls this PrintWrapper's print procedure on the arguments set in the initializer.
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- def to_s
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- @args.empty? ? 'nil' : call(*@args)
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- end
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-
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- alias :inspect :to_s
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- end
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-
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- class Object
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- # @return [String] this object's class demodulized name and object id
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- def print_class_and_id
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- "#{self.class.qp}@#{object_id}"
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- end
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-
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- # qp, an abbreviation for quick-print, calls {#print_class_and_id} in this base implementation.
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- alias :qp :print_class_and_id
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-
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- # Formats this object with the standard {PrettyPrint}.
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- #
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- # @param [Hash, Symbol, nil] opts the print options
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- # @option opts [Boolean] :single_line print the output on a single line
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- # @return [String] the formatted print result
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- def pp_s(opts=nil)
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- s = StringIO.new
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- if Options.get(:single_line, opts) then
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- PP.singleline_pp(self, s)
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- else
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- PP.pp(self, s)
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- end
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- s.rewind
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- s.read.chomp
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- end
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- end
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-
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- class Numeric
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- # Alias #{Object#qp} to {#to_s} in this primitive class.
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- alias :qp :to_s
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- end
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-
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- class String
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- # Alias #{Object#qp} to {#to_s} in this primitive class.
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- alias :qp :to_s
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- end
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-
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- class TrueClass
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- # Alias #{Object#qp} to {#to_s} in this primitive class.
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- alias :qp :to_s
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- end
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-
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- class FalseClass
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- # Alias #{Object#qp} to {#to_s} in this primitive class.
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- alias :qp :to_s
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- end
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-
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- class NilClass
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- # Alias #{Object#qp} to {#to_s} in this primitive class.
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- alias :qp :inspect
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- end
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-
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- class Symbol
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- # Alias #{Object#qp} to {#to_s} in this primitive class.
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- alias :qp :inspect
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- end
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-
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- class Module
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- # @return [String ] the demodulized name
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- def qp
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- name[/\w+$/]
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- end
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- end
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-
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- module Enumerable
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- # Prints this Enumerable with a filter that calls qp on each item.
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- # Non-collection Enumerable classes override this method to delegate to {Object#qp}.
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- #
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- # Unlike {Object#qp}, this implementation accepts the {Object#pp_s} options.
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- # The options are used to format this Enumerable, but are not propagated to the
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- # enumerated items.
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- #
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- # @param (see Object#pp_s)
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- # @return [String] the formatted result
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- def qp(opts=nil)
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- wrap { |item| item.qp }.pp_s(opts)
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- end
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-
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- # If a transformer block is given to this method, then the block is applied to each
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- # enumerated item before pretty-printing the result.
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- #
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- # @param (see Object#pp_s)
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- # @yield [item] transforms the item to print
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- # @yieldparam item the item to print
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- # @return (see Oblect#pp_s)
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- def pp_s(opts=nil)
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- # delegate to Object if no block
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- return super unless block_given?
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- # make a print wrapper
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- wrapper = PrintWrapper.new { |item| yield item }
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- # print using the wrapper on each item
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- wrap { |item| wrapper.wrap(item) }.pp_s(opts)
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- end
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-
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- # Pretty-prints the content within brackets, as is done by the Array pretty printer.
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- def pretty_print(q)
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- q.group(1, '[', ']') {
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- q.seplist(self) { |v|
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- q.pp v
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- }
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- }
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- end
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-
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- # Pretty-prints the cycle within brackets, as is done by the Array pretty printer.
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- def pretty_print_cycle(q)
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- q.text(empty? ? '[]' : '[...]')
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- end
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- end
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-
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- module Hashable
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- # qp, short for quick-print, prints this Hashable with a filter that calls qp on each key and value.
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- #
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- # @return [String] the quick-print result
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- def qp
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- qph = {}
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- each { |k, v| qph[k.qp] = v.qp }
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- qph.pp_s
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- end
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-
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- def pretty_print(q)
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- Hash === self ? q.pp_hash(self) : q.pp_hash(to_hash)
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- end
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-
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- def pretty_print_cycle(q)
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- q.text(empty? ? '{}' : '{...}')
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- end
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- end
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-
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- class String
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- # Pretty-prints this String using the Object pretty_print rather than Enumerable pretty_print.
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- def pretty_print(q)
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- q.text self
179
- end
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- end
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-
182
- class DateTime
183
- # @return [String] the formatted +strftime+
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- def pretty_print(q)
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- q.text(strftime)
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- end
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-
188
- # qp, an abbreviation for quick-print, is an alias for {#to_s} in this primitive class.
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- alias :qp :to_s
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- end
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-
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- class Set
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- # Formats this set using {Enumerable#pretty_print}.
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- def pretty_print(q)
195
- # mark this object as visited; this fragment is inferred from pp.rb and is necessary to detect a cycle
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- Thread.current[:__inspect_key__] << __id__
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- to_a.pretty_print(q)
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- end
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-
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- # The pp.rb default pretty printing method for general objects that are detected as part of a cycle.
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- def pretty_print_cycle(q)
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- to_a.pretty_print_cycle(q)
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- end
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- end
@@ -1,74 +0,0 @@
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- require 'benchmark'
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-
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- # Stopwatch is a simple execution time accumulator.
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- class Stopwatch
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- # Time accumulates elapsed real time and total CPU time.
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- class Time
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- # @return [Benchmark::Tms] the Tms wrapped by this Time
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- attr_reader :tms
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-
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- # @param [Benchmark::Tms, nil] the starting time (default is now)
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- def initialize(tms=nil)
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- @tms = tms || Benchmark::Tms.new
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- end
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-
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- # @return [Numeric] the cumulative elapsed real clock time
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- def elapsed
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- @tms.real
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- end
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-
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- # @return [Numeric] the cumulative CPU total time
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- def cpu
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- @tms.total
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- end
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-
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- # Adds the time to execute the given block to this time.
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- #
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- # @return [Numeric] the split execution Time
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- def split(&block)
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- stms = Benchmark.measure(&block)
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- @tms += stms
31
- Time.new(stms)
32
- end
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-
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- # Sets this benchmark timer to zero.
35
- def reset
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- @tms = Benchmark::Tms.new
37
- end
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- end
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-
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- # Executes the given block
41
- #
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- # @return [Numeric] the execution Time
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- def self.measure(&block)
44
- new.run(&block)
45
- end
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-
47
- # Creates a new idle Stopwatch.
48
- def initialize
49
- @time = Time.new
50
- end
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-
52
- # Executes the given block. Accumulates the execution time in this Stopwatch.
53
- #
54
- # @return [Numeric] the execution run Time
55
- def run(&block)
56
- @time.split(&block)
57
- end
58
-
59
- # @return [Numeric] the cumulative elapsed real clock time spent in {#run} executions
60
- def elapsed
61
- @time.elapsed
62
- end
63
-
64
- # @return [Numeric] the cumulative CPU total time spent in {#run} executions for the
65
- # current process and its children
66
- def cpu
67
- @time.cpu
68
- end
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-
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- # Resets this Stopwatch's cumulative time to zero.
71
- def reset
72
- @time.reset
73
- end
74
- end
@@ -1,62 +0,0 @@
1
- require 'caruby/util/collection'
2
-
3
- # A TopologicalSyncEnumerator iterates over (target, source) pairs with the target matched
4
- # to the source with a matcher block. Child targets are matched to child sources based on
5
- # a topological order reference method. The iteration is performed in depth-first order.
6
- class TopologicalSyncEnumerator
7
- include Enumerable
8
-
9
- # @param targets the objects to synch to
10
- # @param sources the objects to synch from
11
- # @param [Symbol] method the topological order reference method
12
- # @yield (see #each)
13
- def initialize(targets, sources, method, &matcher)
14
- @tgts = targets
15
- @srcs = sources
16
- @mthd = method
17
- @matcher = matcher || lambda { |tgt, srcs| srcs.first }
18
- end
19
-
20
- # Calls the given block on each matching target and source in depth-first order.
21
- #
22
- # @yield [target, source] the objects to synchronize
23
- # @return [Hash] the matching target => source hash
24
- def each
25
- # the parent hashes for targets and sources
26
- pt = @tgts.to_compact_hash { |tgt| tgt.send(@mthd) }
27
- ps = @srcs.to_compact_hash { |src| src.send(@mthd) }
28
-
29
- # the child hashes
30
- ct = LazyHash.new { Array.new }
31
- cs = LazyHash.new { Array.new }
32
-
33
- # collect the chidren and roots
34
- rt = @tgts.reject { |tgt| p = pt[tgt]; ct[p] << tgt if p }
35
- rs = @srcs.reject { |src| p = ps[src]; cs[p] << src if p }
36
-
37
- # the match hash
38
- matches = {}
39
- # match recursively
40
- each_match_recursive(rt, rs, ct, cs) do |tgt, src|
41
- yield(tgt, src)
42
- matches[tgt] = src
43
- end
44
-
45
- matches
46
- end
47
-
48
- private
49
-
50
- def each_match_recursive(targets, sources, ct, cs, &block)
51
- # copy the sources
52
- srcs = sources.dup
53
- # match each target, removing the matched source for the
54
- # next iteration
55
- targets.each do |tgt|
56
- src = @matcher.call(tgt, srcs) || next
57
- yield(tgt, src)
58
- srcs.delete(src)
59
- each_match_recursive(ct[tgt], cs[src], ct, cs, &block)
60
- end
61
- end
62
- end
@@ -1,55 +0,0 @@
1
- require 'caruby/util/visitor'
2
-
3
- class Object
4
- # Returns the transitive closure over a method or block. This method returns an array partially ordered
5
- # by the children method or block, i.e. each node occurs before all other nodes referenced directly or
6
- # indirectly by the children.
7
- #
8
- # If a method symbol or name is provided, then that method is called. Otherwise, the block is called.
9
- # In either case, the call is expected to return an object or Enumerable of objects which also respond
10
- # to the method or block.
11
- #
12
- # @param [Symbol, nil] method the child reference, or nil if a block is given
13
- # @yield [node] the parent node's children
14
- # @yieldparam node the parent node
15
- # @example
16
- # class Node
17
- # attr_reader :parent, :children
18
- # def initialize(name, parent=nil)
19
- # super()
20
- # @name = name
21
- # @parent = parent
22
- # @children = []
23
- # parent.children << self if parent
24
- # end
25
- #
26
- # def to_s;
27
- # end
28
- # a = Node.new('a'); b = Node.new('b', a), c = Node.new('c', a); d = Node.new('d', c)
29
- # a.transitive_closure { |node| node.children }.to_a.join(", ") #=> a, b, c, d
30
- # a.transitive_closure(:children).to_a.join(", ") #=> a, b, c, d
31
- def transitive_closure(method=nil)
32
- raise ArgumentError.new("Missing both a method argument and a block") if method.nil? and not block_given?
33
- # If there is a method argument, then the transitive closure is based on that method.
34
- # Otherwise, visit the closure in reverse depth-first order.
35
- if method then
36
- transitive_closure() { |node| node.send(method) }
37
- else
38
- CaRuby::Visitor.new(:depth_first) { |node| yield node }.to_enum(self).to_a.reverse
39
- end
40
- end
41
- end
42
-
43
- module Enumerable
44
- # Returns the transitive closure over all items in this Enumerable.
45
- #
46
- # @see Object#transitive_closure
47
- def transitive_closure(method=nil)
48
- # delegate to Object if there is a method argument
49
- return super(method) if method
50
- # this Enumerable's children are this Enumerable's contents
51
- closure = super() { |node| node.equal?(self) ? self : yield(node) }
52
- # remove this collection from the closure
53
- closure[1..-1]
54
- end
55
- end
@@ -1,48 +0,0 @@
1
- # A Tree consists of a root node and subtree children.
2
- # A Tree can be decorated with an optional value.
3
- class Tree
4
- attr_reader :root, :children
5
-
6
- attr_accessor :value
7
-
8
- # Creates a Trie with the given root node.
9
- def initialize(root=nil)
10
- @root = root
11
- @children = []
12
- end
13
-
14
- # Adds a subtree rooted at the given node as a child of this tree.
15
- def <<(node)
16
- @children << self.class.new(node)
17
- self
18
- end
19
-
20
- # Returns the subtree at the given node path.
21
- def subtree(*path)
22
- return self if path.empty?
23
- first = path.shift
24
- tree = @children.detect { |child| child.root == first }
25
- tree.subtree(*path) if tree
26
- end
27
-
28
- alias :[] :subtree
29
-
30
- # Creates the given node path if it does not yet exist.
31
- # Returns the subtree at the path.
32
- def fill(*path)
33
- return self if path.empty?
34
- first = path.shift
35
- tree = subtree(first)
36
- if tree.nil? then
37
- self << first
38
- tree = @children.last
39
- end
40
- tree.fill(*path)
41
- end
42
-
43
- def to_s
44
- root_s = @root.nil? || Symbol === root ? root.inspect : root.to_s
45
- return "[#{root_s}]" if @children.empty?
46
- "[#{root_s} -> #{@children.join(', ')}]"
47
- end
48
- end