bones-compiler 1.1.0 → 1.3.1
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- checksums.yaml +15 -0
- data/CHANGELOG +37 -0
- data/LICENSE +1 -1
- data/README.rdoc +95 -70
- data/Rakefile +78 -3
- data/VERSION +1 -1
- data/bin/adarwin +17 -0
- data/examples/benchmarks/PolyBench/2mm.c +104 -0
- data/examples/benchmarks/{3mm.c → PolyBench/3mm.c} +5 -2
- data/examples/benchmarks/{adi.c → PolyBench/adi.c} +6 -3
- data/examples/benchmarks/{atax.c → PolyBench/atax.c} +5 -2
- data/examples/benchmarks/{bicg.c → PolyBench/bicg.c} +5 -2
- data/examples/benchmarks/{cholesky.c → PolyBench/cholesky.c} +3 -0
- data/examples/benchmarks/{common.h → PolyBench/common.h} +2 -2
- data/examples/benchmarks/{correlation.c → PolyBench/correlation.c} +16 -7
- data/examples/benchmarks/{covariance.c → PolyBench/covariance.c} +7 -2
- data/examples/benchmarks/{doitgen.c → PolyBench/doitgen.c} +5 -2
- data/examples/benchmarks/{durbin.c → PolyBench/durbin.c} +3 -0
- data/examples/benchmarks/{dynprog.c → PolyBench/dynprog.c} +3 -0
- data/examples/benchmarks/{fdtd-2d-apml.c → PolyBench/fdtd-2d-apml.c} +3 -0
- data/examples/benchmarks/{fdtd-2d.c → PolyBench/fdtd-2d.c} +5 -2
- data/examples/benchmarks/{floyd-warshall.c → PolyBench/floyd-warshall.c} +3 -0
- data/examples/benchmarks/{gemm.c → PolyBench/gemm.c} +5 -2
- data/examples/benchmarks/{gemver.c → PolyBench/gemver.c} +5 -2
- data/examples/benchmarks/{gesummv.c → PolyBench/gesummv.c} +5 -2
- data/examples/benchmarks/{gramschmidt.c → PolyBench/gramschmidt.c} +3 -0
- data/examples/benchmarks/{jacobi-1d-imper.c → PolyBench/jacobi-1d-imper.c} +10 -2
- data/examples/benchmarks/{jacobi-2d-imper.c → PolyBench/jacobi-2d-imper.c} +8 -3
- data/examples/benchmarks/{lu.c → PolyBench/lu.c} +3 -0
- data/examples/benchmarks/{ludcmp.c → PolyBench/ludcmp.c} +3 -0
- data/examples/benchmarks/{mvt.c → PolyBench/mvt.c} +6 -2
- data/examples/benchmarks/{reg_detect.c → PolyBench/reg_detect.c} +3 -0
- data/examples/benchmarks/{seidel-2d.c → PolyBench/seidel-2d.c} +3 -0
- data/examples/benchmarks/{symm.c → PolyBench/symm.c} +3 -0
- data/examples/benchmarks/{syr2k.c → PolyBench/syr2k.c} +5 -2
- data/examples/benchmarks/{syrk.c → PolyBench/syrk.c} +7 -4
- data/examples/benchmarks/{trisolv.c → PolyBench/trisolv.c} +3 -0
- data/examples/benchmarks/{trmm.c → PolyBench/trmm.c} +3 -0
- data/examples/benchmarks/Rodinia/cfd.c +180 -0
- data/examples/benchmarks/Rodinia/hotspot.c +228 -0
- data/examples/benchmarks/Rodinia/kmeans.c +164 -0
- data/examples/benchmarks/Rodinia/srad.c +188 -0
- data/examples/benchmarks/other/common.h +0 -0
- data/examples/benchmarks/other/dct.c +58 -0
- data/examples/benchmarks/other/mm.c +50 -0
- data/examples/benchmarks/{saxpy.c → other/saxpy.c} +11 -7
- data/examples/chunk/{example1.c → example01.c} +0 -0
- data/examples/chunk/{example2.c → example02.c} +0 -0
- data/examples/chunk/{example3.c → example03.c} +0 -0
- data/examples/chunk/{example4.c → example04.c} +0 -0
- data/examples/chunk/{example5.c → example05.c} +0 -0
- data/examples/chunk/example06.c +45 -0
- data/examples/chunk/example07.c +49 -0
- data/examples/dependences/example01.c +42 -0
- data/examples/dependences/example02.c +40 -0
- data/examples/dependences/example03.c +43 -0
- data/examples/dependences/example04.c +44 -0
- data/examples/dependences/example05.c +42 -0
- data/examples/element/{example1.c → example01.c} +0 -0
- data/examples/element/{example2.c → example02.c} +2 -2
- data/examples/element/{example3.c → example03.c} +0 -0
- data/examples/element/{example4.c → example04.c} +0 -0
- data/examples/element/{example5.c → example05.c} +0 -0
- data/examples/element/{example6.c → example06.c} +0 -0
- data/examples/element/{example7.c → example07.c} +0 -0
- data/examples/element/{example8.c → example08.c} +0 -0
- data/examples/element/{example9.c → example09.c} +0 -0
- data/examples/element/example13.c +73 -0
- data/examples/fusion/example01.c +68 -0
- data/examples/fusion/example02.c +73 -0
- data/examples/fusion/example03.c +72 -0
- data/examples/fusion/example04.c +61 -0
- data/examples/fusion/example05.c +55 -0
- data/examples/neighbourhood/{example1.c → example01.c} +0 -0
- data/examples/neighbourhood/{example2.c → example02.c} +0 -0
- data/examples/neighbourhood/{example3.c → example03.c} +0 -0
- data/examples/neighbourhood/{example4.c → example04.c} +0 -0
- data/examples/neighbourhood/example05.c +44 -0
- data/examples/shared/{example1.c → example01.c} +0 -0
- data/examples/shared/{example2.c → example02.c} +0 -0
- data/examples/shared/{example3.c → example03.c} +0 -0
- data/examples/shared/{example4.c → example04.c} +0 -0
- data/examples/shared/{example5.c → example05.c} +0 -0
- data/lib/adarwin.rb +62 -0
- data/lib/adarwin/dependences.rb +268 -0
- data/lib/adarwin/engine.rb +277 -0
- data/lib/adarwin/fusion.rb +174 -0
- data/lib/adarwin/interval.rb +57 -0
- data/lib/adarwin/memorycopies.rb +153 -0
- data/lib/adarwin/nest.rb +225 -0
- data/lib/adarwin/preprocessor.rb +76 -0
- data/lib/adarwin/reference.rb +261 -0
- data/lib/bones.rb +4 -55
- data/lib/bones/algorithm.rb +77 -40
- data/lib/bones/copy.rb +26 -0
- data/lib/bones/engine.rb +147 -31
- data/lib/bones/preprocessor.rb +92 -12
- data/lib/bones/species.rb +4 -3
- data/lib/bones/structure.rb +14 -4
- data/lib/castaddon.rb +11 -6
- data/lib/castaddon/node_adarwin.rb +245 -0
- data/lib/castaddon/node_bones.rb +316 -0
- data/lib/castaddon/node_common.rb +289 -0
- data/lib/castaddon/transformations.rb +236 -0
- data/lib/common.rb +216 -0
- data/skeletons/CPU-C/common/header.c +3 -0
- data/skeletons/CPU-C/common/mem_global.c +0 -0
- data/skeletons/CPU-C/common/timer_2_start.c +11 -13
- data/skeletons/CPU-C/common/timer_2_stop.c +1 -1
- data/skeletons/CPU-C/common/timer_globals.c +29 -0
- data/skeletons/CPU-OPENCL-INTEL/common/globals.c +1 -1
- data/skeletons/CPU-OPENCL-INTEL/common/header.c +3 -0
- data/skeletons/CPU-OPENCL-INTEL/common/mem_copy_D2H.c +7 -2
- data/skeletons/CPU-OPENCL-INTEL/common/mem_copy_H2D.c +4 -2
- data/skeletons/CPU-OPENCL-INTEL/common/mem_global.c +0 -0
- data/skeletons/CPU-OPENCL-INTEL/common/mem_prologue.c +6 -3
- data/skeletons/CPU-OPENCL-INTEL/common/timer_2_stop.c +1 -1
- data/skeletons/CPU-OPENCL-INTEL/common/timer_globals.c +24 -0
- data/skeletons/CPU-OPENMP/common/globals.c +1 -0
- data/skeletons/CPU-OPENMP/common/header.c +3 -0
- data/skeletons/CPU-OPENMP/common/mem_global.c +0 -0
- data/skeletons/CPU-OPENMP/common/timer_1_start.c +0 -12
- data/skeletons/CPU-OPENMP/common/timer_2_stop.c +1 -1
- data/skeletons/CPU-OPENMP/common/timer_globals.c +33 -0
- data/skeletons/GPU-CUDA/common/globals.c +27 -3
- data/skeletons/GPU-CUDA/common/header.c +2 -0
- data/skeletons/GPU-CUDA/common/mem_async_alloc.c +6 -0
- data/skeletons/GPU-CUDA/common/mem_async_copyin.c +6 -0
- data/skeletons/GPU-CUDA/common/mem_async_copyout.c +6 -0
- data/skeletons/GPU-CUDA/common/mem_async_free.c +6 -0
- data/skeletons/GPU-CUDA/common/mem_copy_D2H.c +2 -1
- data/skeletons/GPU-CUDA/common/mem_copy_H2D.c +2 -1
- data/skeletons/GPU-CUDA/common/mem_global.c +1 -0
- data/skeletons/GPU-CUDA/common/mem_prologue.c +1 -2
- data/skeletons/GPU-CUDA/common/scheduler.c +86 -0
- data/skeletons/GPU-CUDA/common/timer_2_start.c +2 -4
- data/skeletons/GPU-CUDA/common/timer_2_stop.c +3 -5
- data/skeletons/GPU-CUDA/common/timer_globals.c +26 -0
- data/skeletons/GPU-CUDA/kernel/2xN-N-chunk-1-N-to-D-element.kernel.cu +5 -7
- data/skeletons/GPU-CUDA/kernel/N-N-chunk-1-N-to-D-element.kernel.cu +4 -6
- data/skeletons/GPU-CUDA/kernel/default.host.c +1 -1
- data/skeletons/GPU-CUDA/kernel/default.kernel.cu +6 -8
- data/skeletons/GPU-CUDA/skeletons.txt +6 -5
- data/{examples/benchmarks/2mm.c → test/examples/benchmarks/PolyBench/2mm_species.c} +19 -15
- data/test/examples/benchmarks/PolyBench/3mm_species.c +82 -0
- data/test/examples/benchmarks/PolyBench/adi_species.c +89 -0
- data/test/examples/benchmarks/PolyBench/atax_species.c +69 -0
- data/test/examples/benchmarks/PolyBench/bicg_species.c +71 -0
- data/test/examples/benchmarks/PolyBench/cholesky_species.c +68 -0
- data/test/examples/benchmarks/PolyBench/correlation_species.c +97 -0
- data/test/examples/benchmarks/PolyBench/covariance_species.c +78 -0
- data/test/examples/benchmarks/PolyBench/doitgen_species.c +67 -0
- data/test/examples/benchmarks/PolyBench/durbin_species.c +80 -0
- data/test/examples/benchmarks/PolyBench/dynprog_species.c +71 -0
- data/test/examples/benchmarks/PolyBench/fdtd-2d-apml_species.c +112 -0
- data/test/examples/benchmarks/PolyBench/fdtd-2d_species.c +78 -0
- data/test/examples/benchmarks/PolyBench/floyd-warshall_species.c +54 -0
- data/test/examples/benchmarks/PolyBench/gemm_species.c +73 -0
- data/test/examples/benchmarks/PolyBench/gemver_species.c +93 -0
- data/test/examples/benchmarks/PolyBench/gesummv_species.c +68 -0
- data/test/examples/benchmarks/PolyBench/gramschmidt_species.c +78 -0
- data/test/examples/benchmarks/PolyBench/jacobi-1d-imper_species.c +59 -0
- data/test/examples/benchmarks/PolyBench/jacobi-2d-imper_species.c +65 -0
- data/test/examples/benchmarks/PolyBench/lu_species.c +57 -0
- data/test/examples/benchmarks/PolyBench/ludcmp_species.c +89 -0
- data/test/examples/benchmarks/PolyBench/mvt_species.c +69 -0
- data/test/examples/benchmarks/PolyBench/reg_detect_species.c +86 -0
- data/test/examples/benchmarks/PolyBench/seidel-2d_species.c +53 -0
- data/test/examples/benchmarks/PolyBench/symm_species.c +74 -0
- data/test/examples/benchmarks/PolyBench/syr2k_species.c +69 -0
- data/test/examples/benchmarks/PolyBench/syrk_species.c +66 -0
- data/test/examples/benchmarks/PolyBench/trisolv_species.c +61 -0
- data/test/examples/benchmarks/PolyBench/trmm_species.c +61 -0
- data/test/examples/chunk/example01_species.c +58 -0
- data/test/examples/chunk/example02_species.c +48 -0
- data/test/examples/chunk/example03_species.c +63 -0
- data/test/examples/chunk/example04_species.c +58 -0
- data/test/examples/chunk/example05_species.c +56 -0
- data/test/examples/chunk/example06_species.c +49 -0
- data/test/examples/chunk/example07_species.c +53 -0
- data/test/examples/dependences/example01_species.c +46 -0
- data/test/examples/dependences/example02_species.c +44 -0
- data/test/examples/dependences/example03_species.c +47 -0
- data/test/examples/dependences/example04_species.c +48 -0
- data/test/examples/dependences/example05_species.c +46 -0
- data/test/examples/element/example01_species.c +50 -0
- data/test/examples/element/example02_species.c +50 -0
- data/test/examples/element/example03_species.c +62 -0
- data/test/examples/element/example04_species.c +53 -0
- data/test/examples/element/example05_species.c +59 -0
- data/test/examples/element/example06_species.c +50 -0
- data/test/examples/element/example07_species.c +58 -0
- data/test/examples/element/example08_species.c +49 -0
- data/test/examples/element/example09_species.c +52 -0
- data/test/examples/element/example10_species.c +54 -0
- data/test/examples/element/example11_species.c +51 -0
- data/test/examples/element/example12_species.c +60 -0
- data/test/examples/element/example13_species.c +77 -0
- data/test/examples/neighbourhood/example01_species.c +57 -0
- data/test/examples/neighbourhood/example02_species.c +56 -0
- data/test/examples/neighbourhood/example03_species.c +83 -0
- data/test/examples/neighbourhood/example04_species.c +55 -0
- data/test/examples/neighbourhood/example05_species.c +48 -0
- data/test/examples/shared/example01_species.c +49 -0
- data/test/examples/shared/example02_species.c +55 -0
- data/test/examples/shared/example03_species.c +59 -0
- data/test/examples/shared/example04_species.c +56 -0
- data/test/examples/shared/example05_species.c +52 -0
- metadata +193 -73
- data/examples/benchmarks/overview.txt +0 -38
- data/lib/castaddon/node.rb +0 -753
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//
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// This file is part of the Bones source-to-source compiler examples. This C-code
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// example is meant to illustrate the use of Bones. For more information on Bones
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// use the contact information below.
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//
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// == More information on Bones
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// Contact............Cedric Nugteren <c.nugteren@tue.nl>
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// Web address........http://parse.ele.tue.nl/bones/
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//
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// == File information
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// Filename...........neighbourhood/example05.c
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// Author.............Cedric Nugteren
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// Last modified on...07-May-2013
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//
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#include <stdio.h>
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// This is 'example05', an unrolled one-sided neighbourhood
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int main(void) {
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int i;
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int N = 256;
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// Declare input/output arrays
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int A[N];
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int B[N];
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// Set the input data
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for(i=0;i<N;i++) {
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A[i] = i;
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B[i] = i+5;
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}
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// Perform the computation
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#pragma species kernel A[2:N]|neighbourhood(0:1) -> B[2:N-1]|element
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for (i=2; i<N; i++) {
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B[i] = A[i] + A[i+1];
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}
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#pragma species endkernel example05
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// Clean-up and exit the function
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fflush(stdout);
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return 0;
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}
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data/lib/adarwin.rb
ADDED
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# Include the common part between Bones and A-Darwin
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require 'common.rb'
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# We define a custom error class for code generation related
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# errors (any error raised).
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class CodeGenError < StandardError #:nodoc:
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end
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def raise_error(message) #:nodoc:
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puts Adarwin::ERROR+message
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raise CodeGenError, 'Error encountered, stopping execution of A-Darwin'
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end
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# The module keeps all the classes and constants
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# together. It contains the classes:
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# * Engine: The main component of the tool, providing the high-level flow.
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# * Preprocessor: C-preprocessor, extracting defines/includes from source code.
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# * Nest:
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# * Interval:
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# * Dependence:
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# * Reference:
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#
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# The module also contains a list of inter-class constants.
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module Adarwin
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# A string given as a start of an informative message.
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MESSAGE = '[A-Darwin] ### Info : '
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# A string given as a start of an warning message.
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WARNING = '[A-Darwin] ### Warning: '
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# A string given as a start of an error message.
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ERROR = '[A-Darwin] ### Error : '
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# Start of the scop
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SCOP_START = '#pragma scop'
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# Enf of the scop
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SCOP_END = '#pragma endscop'
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# Species pragma
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PRAGMA_SPECIES = '#pragma species'
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# Array reference characterisation (ARC) pragma
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PRAGMA_ARC = '#pragma ARC'
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# Create a string from a pragma because pragma's are unsupported by CAST.
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PRAGMA_DELIMITER_START = '"PRAGMA '
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PRAGMA_DELIMITER_END = ' PRAGMA"'
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# This class is created to be a parent class of all classes.
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class Common
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end
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end
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# This list of require's makes sure all classes are included.
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require 'adarwin/interval.rb'
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require 'adarwin/dependences.rb'
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require 'adarwin/preprocessor.rb'
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require 'adarwin/memorycopies.rb'
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require 'adarwin/fusion.rb'
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require 'adarwin/engine.rb'
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require 'adarwin/reference.rb'
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require 'adarwin/nest.rb'
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module Adarwin
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# This class represents the dependence tests. The dependence tests are not
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# objects as such, the use of a class might therefore be a bit out of place.
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# Instead, the class rather holds all methods related to dependence tests.
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#
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# For an M-dimensional access, the problem of dependence testing is reduced to
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# that of determining whether a system of M linear equations of the form
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# >>> a_1*I_1 + a_2*I_2 + ... + a_n*I_n = a_0
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# has a simultaneous integer solution satisfying the loop/if bounds given as
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# >>> min_k <= I_k <= max_k
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#
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# Currently, the following conservative tests are implemented:
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# * The GCD (greatest common divisor) test
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# * The Banerjee test
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#
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# In case the accesses are multi-dimensional, we perform a subscript-by-
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# subscript checking. In other words, we test each dimension separately
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# using the two tests. If we find a possible dependence in one dimension, we
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# conclude that there is a dependence.
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class Dependence
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attr_accessor :result
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# Method to initialise the dependence tests. This method actually already
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# computes all the dependence tests and stores the result in a class
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# variable. It takes as input the pair of accesses it needs to check for
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# dependences.
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def initialize(access1,access2,verbose)
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@verbose = verbose
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bounds = [access1.bounds,access2.bounds]
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# Iterate over the dimensions of the array reference
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results = []
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|
+
dimensions = [access1.indices.size,access2.indices.size].min
|
35
|
+
for dim in 1..dimensions
|
36
|
+
ref1 = access1.indices[dim-1]
|
37
|
+
ref2 = access2.indices[dim-1]
|
38
|
+
loop_vars = [access1.all_loops.map{ |l| l[:var] },access2.all_loops.map{ |l| l[:var] }]
|
39
|
+
|
40
|
+
# Conclude directly that there is no dependence if the references are
|
41
|
+
# exactly the same.
|
42
|
+
if ref1 == ref2
|
43
|
+
results << false
|
44
|
+
next
|
45
|
+
end
|
46
|
+
|
47
|
+
# TODO: Include the step in the dependence tests
|
48
|
+
#p access1.tS[dim-1]
|
49
|
+
|
50
|
+
# Get all variables, a linear equation, and the corresponding conditions
|
51
|
+
all_vars, equation, conditions = get_linear_equation(ref1,ref2,bounds,loop_vars)
|
52
|
+
|
53
|
+
# Conclude directly that there is no dependence if the variables are not
|
54
|
+
# dependent on the loops.
|
55
|
+
if equation[:ak].empty?
|
56
|
+
results << false
|
57
|
+
next
|
58
|
+
end
|
59
|
+
|
60
|
+
# Perform the GCD test
|
61
|
+
gcd_result = gcd_test(all_vars,equation)
|
62
|
+
|
63
|
+
# End if the GCD test concludes that there are no dependences
|
64
|
+
if gcd_result == false
|
65
|
+
results << false
|
66
|
+
|
67
|
+
# Continue with Banerjee if GCD concludes there might be dependences
|
68
|
+
else
|
69
|
+
ban_result = ban_test(all_vars,equation,conditions)
|
70
|
+
results << ban_result
|
71
|
+
end
|
72
|
+
end
|
73
|
+
|
74
|
+
# Combine the results for all dimensions
|
75
|
+
if results.include?(true)
|
76
|
+
@result = true
|
77
|
+
else
|
78
|
+
@result = false
|
79
|
+
end
|
80
|
+
end
|
81
|
+
|
82
|
+
# This method implements the GCD test. The test is based on the computation
|
83
|
+
# of the greatest common divisor, giving it its name. The GCD test is based
|
84
|
+
# on the fact that a linear equation in the form of
|
85
|
+
# >>> a_1*I_1 + a_2*I_2 + ... + a_n*I_n = a_0
|
86
|
+
# has an integer solution if and only if the greatest common divisor of a_1,
|
87
|
+
# a_2,...,a_n is a divisor of a_0. The GCD test checks for this
|
88
|
+
# divisability by performing the division and checking if the result is
|
89
|
+
# integer.
|
90
|
+
#
|
91
|
+
# This method returns true if there is an integer solution, not necessarily
|
92
|
+
# within the loop bounds. Thus, if the method returns true, there might be a
|
93
|
+
# dependence. If the method returns false, there is definitely no dependence.
|
94
|
+
#
|
95
|
+
# TODO: If the result (+division+) is symbolic, can we conclude anything?
|
96
|
+
def gcd_test(all_vars,equation)
|
97
|
+
|
98
|
+
# Gather all the data to perform the test. Here, base represents a_0 and
|
99
|
+
# data represents a_1,a_2,...,a_n.
|
100
|
+
base = equation[:a0]
|
101
|
+
data = equation[:ak]
|
102
|
+
|
103
|
+
# Perform the greatest common divisor calculation and perform the division
|
104
|
+
result = gcd(data)
|
105
|
+
division = base/result.to_f
|
106
|
+
|
107
|
+
# See if the division is integer under the condition that we can test that
|
108
|
+
if result == 0
|
109
|
+
gcd_result = false
|
110
|
+
elsif division.class != Float
|
111
|
+
gcd_result = true
|
112
|
+
else
|
113
|
+
gcd_result = (division.to_i.to_f == division)
|
114
|
+
end
|
115
|
+
|
116
|
+
# Display and return the result
|
117
|
+
puts MESSAGE+"GCD-test '#{gcd_result}' ---> (#{base})/(#{result}) = #{division}, gcd(#{data})" if @verbose
|
118
|
+
return gcd_result
|
119
|
+
end
|
120
|
+
|
121
|
+
# This method implements the Banerjee test. This test takes loop bounds into
|
122
|
+
# consideration. The test is based on a linear equation in the form of
|
123
|
+
# >>> a_1*I_1 + a_2*I_2 + ... + a_n*I_n = a_0
|
124
|
+
# and loop bounds in the form of
|
125
|
+
# >>> min_k <= I_k <= max_k
|
126
|
+
#
|
127
|
+
# The test proceeds as follows. First, the values a_k+ and a_k- are
|
128
|
+
# computed. Also, the bounds min_k and max_k are calculated from the loop
|
129
|
+
# conditions. Following, the test computes the extreme values 'low' and
|
130
|
+
# 'high'. Finally, the test computes whether the following holds:
|
131
|
+
# >>> low <= a_0 <= high
|
132
|
+
# If this holds, there might be a dependence (method returns true). If this
|
133
|
+
# does not hold, there is definitely no dependence (method returns false).
|
134
|
+
def ban_test(all_vars,equation,conditions)
|
135
|
+
|
136
|
+
# Pre-process the data to obtain the a_k+, a_k-, and lower-bounds and
|
137
|
+
# upper-bounds for a_k (min_k and max_k).
|
138
|
+
values = []
|
139
|
+
equation[:ak].each_with_index do |a,index|
|
140
|
+
values << {
|
141
|
+
:ak_plus => (a >= 0) ? a : 0,
|
142
|
+
:ak_min => (a <= 0) ? -a : 0,
|
143
|
+
:min_k => conditions[index][:min],
|
144
|
+
:max_k => conditions[index][:max]
|
145
|
+
}
|
146
|
+
end
|
147
|
+
|
148
|
+
# Compute the extreme values 'low' and 'high'. This is done symbolically.
|
149
|
+
low, high = "0", "0"
|
150
|
+
values.each do |v|
|
151
|
+
partial_low = simplify("
|
152
|
+
(#{v[:ak_plus]}) * (#{v[:min_k]}) -
|
153
|
+
(#{v[:ak_min]}) * (#{v[:max_k]})
|
154
|
+
")
|
155
|
+
low = simplify("(#{low}) + (#{partial_low})")
|
156
|
+
partial_high = simplify("
|
157
|
+
(#{v[:ak_plus]}) * (#{v[:max_k]}) -
|
158
|
+
(#{v[:ak_min]}) * (#{v[:min_k]})
|
159
|
+
")
|
160
|
+
high = simplify("(#{high}) + (#{partial_high})")
|
161
|
+
end
|
162
|
+
|
163
|
+
# Perform the actual test: checking if low <= a_0 <= high holds. This is
|
164
|
+
# implemented as two parts: check the lower-bound and check the upper-
|
165
|
+
# bound.
|
166
|
+
# FIXME: This method uses the +max+ which might make a guess.
|
167
|
+
base = equation[:a0]
|
168
|
+
test1 = (base.to_s == max(low,base.to_s))
|
169
|
+
test2 = (high == max(base.to_s,high))
|
170
|
+
ban_result = (test1 && test2)
|
171
|
+
|
172
|
+
# Display and return the results
|
173
|
+
puts MESSAGE+"Banerjee '#{ban_result}' ---> (#{test1},#{test2}), '(#{low} <= #{base} <= #{high})'" if @verbose
|
174
|
+
return ban_result
|
175
|
+
end
|
176
|
+
|
177
|
+
# This method retrieves a linear equation from a pair of access. Accesses
|
178
|
+
# are transformed into a linear equation of the form
|
179
|
+
# >>> a_1*I_1 + a_2*I_2 + ... + a_n*I_n = a_0
|
180
|
+
# Additionally, this method returns a list of all variables and a list of
|
181
|
+
# loop bounds corresponding to the linear equation's variables.
|
182
|
+
def get_linear_equation(access1,access2,bounds,all_loop_vars)
|
183
|
+
equation = { :a0 => 0, :ak => [] }
|
184
|
+
all_vars = []
|
185
|
+
conditions = []
|
186
|
+
hash = {}
|
187
|
+
|
188
|
+
# Loop over the two accesses
|
189
|
+
[access1,access2].each_with_index do |access,index|
|
190
|
+
access = simplify(access.to_s)
|
191
|
+
|
192
|
+
# Get the variables (I_1 ... I_n) and modify the access expression
|
193
|
+
vars = get_vars(access).uniq
|
194
|
+
loop_vars = get_loop_vars(vars,all_loop_vars[index])
|
195
|
+
all_vars = (all_vars + vars).uniq
|
196
|
+
vars.each do |var_name|
|
197
|
+
access = access.gsub(/\b#{var_name}\b/,"hash[:#{var_name}]")
|
198
|
+
end
|
199
|
+
|
200
|
+
# Create a hash of all the variables. For now, this is just the name of
|
201
|
+
# the variable. The values will be set later. This uses the 'symbolic'
|
202
|
+
# library.
|
203
|
+
vars.each do |var_name|
|
204
|
+
if !hash[var_name.to_sym]
|
205
|
+
hash[var_name.to_sym] = var :name => var_name
|
206
|
+
end
|
207
|
+
hash[var_name.to_sym].value = hash[var_name.to_sym]
|
208
|
+
end
|
209
|
+
|
210
|
+
# Find the constant term (a_0). This uses the +eval+ method together
|
211
|
+
# with the 'symbolic' gem to compute the term.
|
212
|
+
loop_vars.each do |var_name|
|
213
|
+
hash[var_name.to_sym].value = 0
|
214
|
+
end
|
215
|
+
base = eval(access).value
|
216
|
+
val = (index == 0) ? base : -base
|
217
|
+
equation[:a0] = equation[:a0] + val
|
218
|
+
|
219
|
+
# Find the other terms (a_1, a_2, ... a_n). This uses the +eval+ method
|
220
|
+
# together with the 'symbolic' gem to compute the terms.
|
221
|
+
loop_vars.each do |var_name|
|
222
|
+
hash[var_name.to_sym].value = 1
|
223
|
+
val = eval(access).value - base
|
224
|
+
val = (index == 0) ? val : -val
|
225
|
+
equation[:ak] << val
|
226
|
+
hash[var_name.to_sym].value = 0
|
227
|
+
end
|
228
|
+
|
229
|
+
# Get the loop bound conditions corresponding to the linear equation's
|
230
|
+
# variables.
|
231
|
+
loop_vars.each do |var_name|
|
232
|
+
conditions << bounds[index].select{ |c| c[:var] == var_name }.first
|
233
|
+
end
|
234
|
+
end
|
235
|
+
return all_vars, equation, conditions
|
236
|
+
end
|
237
|
+
|
238
|
+
# Implementation of a GCD method with any number of arguments. Relies on
|
239
|
+
# Ruby's default GCD method. In contrast to the normal gcd method, this
|
240
|
+
# method does not act on a number, but instead takes an array of numbers as
|
241
|
+
# an input.
|
242
|
+
def gcd(args)
|
243
|
+
val = args.first
|
244
|
+
args.drop(1).each do |argument|
|
245
|
+
val = val.gcd(argument)
|
246
|
+
end
|
247
|
+
return val
|
248
|
+
end
|
249
|
+
|
250
|
+
# Method to obtain all variables in an array reference that are also loop
|
251
|
+
# variables.
|
252
|
+
def get_loop_vars(vars,all_loop_vars)
|
253
|
+
return vars & all_loop_vars
|
254
|
+
end
|
255
|
+
|
256
|
+
# Method to combine an array of integers in the form of a subtraction. For
|
257
|
+
# example, given the input [a,b,c,d], the output will be (a-b-c-d).
|
258
|
+
# TODO: Remove this method
|
259
|
+
#def merge_subtract(args)
|
260
|
+
# val = args.first
|
261
|
+
# args.drop(1).each do |argument|
|
262
|
+
# val = val - argument
|
263
|
+
# end
|
264
|
+
# return val
|
265
|
+
#end
|
266
|
+
|
267
|
+
end
|
268
|
+
end
|
@@ -0,0 +1,277 @@
|
|
1
|
+
|
2
|
+
module Adarwin
|
3
|
+
|
4
|
+
# This is the main 'engine' for the A-darwin algorithmic species extraction
|
5
|
+
# tool. It contains methods to parse the command-line arguments, to run the
|
6
|
+
# pre-processor, to insert the annotations, and to pretty print the final
|
7
|
+
# output.
|
8
|
+
# TODO: Add a syntax check by a normal compiler first (e.g. gcc)
|
9
|
+
class Engine < Common
|
10
|
+
|
11
|
+
# Initializes the engine and processes the command line arguments. This
|
12
|
+
# method uses the 'trollop' gem to parse the arguments and to create a
|
13
|
+
# nicely formatted help menu. This method additionally initializes a result-
|
14
|
+
# hash and reads the contents of the source file from disk.
|
15
|
+
#
|
16
|
+
# ==== Command-line usage:
|
17
|
+
# adarwin --application <input> [OPTIONS]
|
18
|
+
#
|
19
|
+
# ==== Options:
|
20
|
+
# --application, -a <s>: Input application file
|
21
|
+
# --no-memory-annotations, -m: Disable the printing of memory annotations
|
22
|
+
# --mem-remove-spurious, -s: Memcopy optimisation: remove spurious copies
|
23
|
+
# --mem-copyin-to-front, -f: Memcopy optimisation: move copyins to front
|
24
|
+
# --mem-copyout-to-back, -b: Memcopy optimisation: move copyouts to back
|
25
|
+
# --mem-to-outer-loop, -l: Memcopy optimisation: move copies to outer loops
|
26
|
+
# --only-alg-number, -o <i>: Only generate code for the x-th species (99 -> all) (default: 99)
|
27
|
+
# --version, -v: Print version and exit
|
28
|
+
# --help, -h: Show this message
|
29
|
+
#
|
30
|
+
def initialize
|
31
|
+
@result = {:original_code => [],
|
32
|
+
:species_code => []}
|
33
|
+
|
34
|
+
# Parse the command line options using the 'trollop' gem.
|
35
|
+
@options = Trollop::options do
|
36
|
+
version 'A-darwin, part of Bones version '+File.read(ADARWIN_DIR+'/VERSION').strip+' (c) 2013 Cedric Nugteren, Eindhoven University of Technology'
|
37
|
+
banner NL+'A-darwin is an algorithmic species extraction tool. ' +
|
38
|
+
'For more information, see the README.rdoc file or visit the Bones/A-darwin website at http://parse.ele.tue.nl/bones/.' + NL + NL +
|
39
|
+
'Usage:' + NL +
|
40
|
+
' adarwin --application <input> [OPTIONS]' + NL +
|
41
|
+
'using the following flags:'
|
42
|
+
opt :application, 'Input application file', :short => 'a', :type => String
|
43
|
+
opt :no_memory_annotations, 'Disable the printing of memory annotations', :short => 'm', :default => false
|
44
|
+
opt :mem_remove_spurious, 'Memcopy optimisation: remove spurious copies', :short => 'r', :default => false
|
45
|
+
opt :mem_copyin_to_front, 'Memcopy optimisation: move copyins to front', :short => 'f', :default => false
|
46
|
+
opt :mem_copyout_to_back, 'Memcopy optimisation: move copyouts to back', :short => 'b', :default => false
|
47
|
+
opt :mem_to_outer_loop, 'Memcopy optimisation: move copies to outer loops', :short => 'l', :default => false
|
48
|
+
opt :fusion, 'Type of kernel fusion to perform (0 -> disable)', :short => 'k', :type => Integer, :default => 0
|
49
|
+
opt :print_arc, 'Print array reference characterisations (ARC) instead of species', :short => 'c', :default => false
|
50
|
+
opt :silent, 'Become silent (no message printing)', :short => 's', :default => false
|
51
|
+
opt :only_alg_number, 'Only generate code for the x-th species (99 -> all)', :short => 'o', :type => Integer, :default => 99
|
52
|
+
end
|
53
|
+
Trollop::die 'no input file supplied (use: --application)' if !@options[:application_given]
|
54
|
+
Trollop::die 'input file "'+@options[:application]+'" does not exist' if !File.exists?(@options[:application])
|
55
|
+
@options[:name] = @options[:application].split('/').last.split('.').first
|
56
|
+
@options[:no_memory_annotations] = true if @options[:print_arc]
|
57
|
+
|
58
|
+
# Obtain the source code from file
|
59
|
+
@source = File.open(@options[:application],'r'){|f| f.read}
|
60
|
+
@basename = File.basename(@options[:application],'.c')
|
61
|
+
end
|
62
|
+
|
63
|
+
# Method to process a file and to output target code. This method calls all
|
64
|
+
# the other methods, it is the main engine.
|
65
|
+
#
|
66
|
+
# ==== Tasks:
|
67
|
+
# * Run the preprocessor to obtain algorithm information.
|
68
|
+
# * Use the 'CAST' gem to parse the source into an AST.
|
69
|
+
# * Call the code generator to perform the real work and produce output.
|
70
|
+
def process
|
71
|
+
|
72
|
+
# Run the preprocessor
|
73
|
+
preprocessor = Adarwin::Preprocessor.new(@source)
|
74
|
+
preprocessor.process
|
75
|
+
@result[:header_code] = preprocessor.header_code
|
76
|
+
|
77
|
+
# Set-up the CAST gem to include certain types
|
78
|
+
# FIXME: What about other (user-defined?) types?
|
79
|
+
parser = C::Parser.new
|
80
|
+
parser.type_names << 'FILE'
|
81
|
+
parser.type_names << 'size_t'
|
82
|
+
|
83
|
+
# Parse the original source code into AST form (using CAST)
|
84
|
+
original_ast = parser.parse(preprocessor.parsed_code)
|
85
|
+
|
86
|
+
# Create an AST of the SCoP (using CAST) and save a backup
|
87
|
+
scop_ast = C::Block.parse('{'+preprocessor.scop_code+'}')
|
88
|
+
original_scop_ast = scop_ast.clone
|
89
|
+
|
90
|
+
# Process the scop to identify the loop nests of interest and to find the
|
91
|
+
# corresponding species. This is the method performing most of the work.
|
92
|
+
@nests = []
|
93
|
+
@id = 0
|
94
|
+
populate_nests(scop_ast)
|
95
|
+
|
96
|
+
# Remove inner-loop (nested) species. This removes all species that are
|
97
|
+
# found within another species. For completeness, this might be desired in
|
98
|
+
# some cases.
|
99
|
+
# TODO: Make this an option
|
100
|
+
@nests.each do |nest|
|
101
|
+
if nest.has_species?
|
102
|
+
remove_inner_species(get_children(nest))
|
103
|
+
end
|
104
|
+
end
|
105
|
+
@nests.delete_if{ |n| n.removed }
|
106
|
+
|
107
|
+
# Iterate over the nests/statements to optimize the copies. Currently,
|
108
|
+
# this will only look at loop nests with a depth of 1. Re-call the memory
|
109
|
+
# copy optimisations method every time a change is made.
|
110
|
+
# TODO: Investigate what the depth should be.
|
111
|
+
basenests = @nests.select{ |n| n.depth == 1 }
|
112
|
+
recursive_copy_optimisations(basenests,@options)
|
113
|
+
|
114
|
+
# Kernel fusion is enabled (1,2,3,4) or disabled (0)
|
115
|
+
if @options[:fusion] > 0
|
116
|
+
# Test if fusion is legal and perform the actual transformation
|
117
|
+
kernel_fusion(@nests, @options[:fusion])
|
118
|
+
end
|
119
|
+
|
120
|
+
# Delete the to-be-removed code (because of fusion)
|
121
|
+
@nests.each do |nest|
|
122
|
+
if nest.removed
|
123
|
+
scop_ast.remove_once(nest.code)
|
124
|
+
end
|
125
|
+
end
|
126
|
+
@nests.delete_if{ |n| n.removed }
|
127
|
+
|
128
|
+
# Insert the species and memory copy annotations into the original code.
|
129
|
+
# Don't do this if the user specified that he is not interested in the
|
130
|
+
# memory copy annotations.
|
131
|
+
insert_copies(scop_ast) unless @options[:no_memory_annotations]
|
132
|
+
insert_species(scop_ast)
|
133
|
+
|
134
|
+
# Create the modified SCoP and remove the quotes from the pragma's
|
135
|
+
# FIXME: This is a hack for now, this has conflicts with strings in code
|
136
|
+
modified_scop = INDENT+SCOP_START+NL+scop_ast.to_s+NL+INDENT+SCOP_END+NL
|
137
|
+
modified_scop = modified_scop.gsub(PRAGMA_DELIMITER_START,'')
|
138
|
+
modified_scop = modified_scop.gsub(PRAGMA_DELIMITER_END,'')
|
139
|
+
|
140
|
+
# Print the result SCoP
|
141
|
+
puts modified_scop if !@options[:silent]
|
142
|
+
|
143
|
+
# Store the result
|
144
|
+
@result[:species_code] = preprocessor.target_code.gsub(preprocessor.scop_code,modified_scop)
|
145
|
+
end
|
146
|
+
|
147
|
+
# This method writes the output code to a file.
|
148
|
+
def write_output
|
149
|
+
|
150
|
+
# Populate the species file
|
151
|
+
# TODO: The filename is fixed, make this an optional argument
|
152
|
+
File.open(File.join(@options[:application].split('.').first+'_species'+'.c'),'w') do |target|
|
153
|
+
target.puts @result[:species_code]
|
154
|
+
end
|
155
|
+
end
|
156
|
+
|
157
|
+
# This method populates the Nest datastructure (recursively). It is the main
|
158
|
+
# method to process the loop nests and fine the species information. It is
|
159
|
+
# called recursively.
|
160
|
+
def populate_nests(ast,level=[])
|
161
|
+
|
162
|
+
# Only proceed if it is a loop
|
163
|
+
if ast.block?
|
164
|
+
|
165
|
+
# Create the new loop nests for the current depth level
|
166
|
+
ast.stmts.each_with_index do |nest,index|
|
167
|
+
new_level = level.clone.push(index)
|
168
|
+
|
169
|
+
# Push the loop nest, but only if it is not disabled by options
|
170
|
+
if @options[:only_alg_number].to_i == 99 || @options[:only_alg_number].to_i == (@id+1)
|
171
|
+
|
172
|
+
# Only continue if the nest is an actual loop nest
|
173
|
+
if nest.for_statement?
|
174
|
+
@nests.push(Nest.new(new_level,nest,@id,@basename,!@options[:silent]))
|
175
|
+
end
|
176
|
+
end
|
177
|
+
@id += 1
|
178
|
+
end
|
179
|
+
|
180
|
+
# Proceed to the next depth level.
|
181
|
+
# TODO: Make it an option to only investigate the outer most level(s).
|
182
|
+
ast.stmts.each_with_index do |nest,index|
|
183
|
+
new_level = level.clone.push(index)
|
184
|
+
if nest.stmt # && new_level == 0
|
185
|
+
populate_nests(nest.stmt,new_level)
|
186
|
+
end
|
187
|
+
end
|
188
|
+
end
|
189
|
+
end
|
190
|
+
|
191
|
+
# This method removes all species in the current loop nest (called
|
192
|
+
# recursively). It assumes these species should be removed.
|
193
|
+
def remove_inner_species(nests)
|
194
|
+
nests.each do |nest|
|
195
|
+
nest.copyins = []
|
196
|
+
nest.copyouts = []
|
197
|
+
nest.species = ''
|
198
|
+
nest.removed = true
|
199
|
+
children = get_children(nest)
|
200
|
+
remove_inner_species(children) if children
|
201
|
+
end
|
202
|
+
end
|
203
|
+
|
204
|
+
# Method to obtain the children of a nest
|
205
|
+
def get_children(parent)
|
206
|
+
children = []
|
207
|
+
@nests.map do |nest|
|
208
|
+
if parent.depth+1 == nest.depth
|
209
|
+
if parent.level == nest.level.reverse.drop(1).reverse
|
210
|
+
children << nest
|
211
|
+
end
|
212
|
+
end
|
213
|
+
end
|
214
|
+
return children
|
215
|
+
end
|
216
|
+
|
217
|
+
# This method iterates over the loop nests and inserts the species into the
|
218
|
+
# original AST. It also inserts the synchronisation barries when needed, and
|
219
|
+
# only if the user is interested in the memory copy annotations.
|
220
|
+
def insert_species(scop_ast)
|
221
|
+
|
222
|
+
# Find out where the synchronisation statements are needed
|
223
|
+
sync_needed = []
|
224
|
+
@nests.each do |nest|
|
225
|
+
sync_needed << nest.copyins.map{ |c| c.get_sync_id }
|
226
|
+
sync_needed << nest.copyouts.map{ |c| c.get_sync_id }
|
227
|
+
end
|
228
|
+
sync_needed = sync_needed.flatten.uniq
|
229
|
+
|
230
|
+
# Insert the annotations into the code
|
231
|
+
sync = 0
|
232
|
+
@nests.each do |nest|
|
233
|
+
sync = 2*nest.id
|
234
|
+
|
235
|
+
# Insert the pre-kernel synchronisation barrier
|
236
|
+
if sync_needed.include?(sync) && !@options[:no_memory_annotations]
|
237
|
+
nest.code.insert_prev(C::StringLiteral.parse(PRAGMA_DELIMITER_START+PRAGMA_SPECIES+' sync '+(sync).to_s+PRAGMA_DELIMITER_END))
|
238
|
+
end
|
239
|
+
|
240
|
+
# Insert the pre-kernel species (start of species)
|
241
|
+
if nest.has_species?
|
242
|
+
to_print = (@options[:print_arc]) ? nest.print_arc_start : nest.print_species_start
|
243
|
+
nest.code.insert_prev(C::StringLiteral.parse(to_print))
|
244
|
+
end
|
245
|
+
|
246
|
+
# Insert the post-kernel synchronisation barrier
|
247
|
+
if sync_needed.include?(sync+1) && !@options[:no_memory_annotations]
|
248
|
+
node = (nest.code.next && nest.code.next.string? && nest.code.next.val =~ /pragma species copyout/) ? nest.code.next : nest.code
|
249
|
+
node.insert_next(C::StringLiteral.parse(PRAGMA_DELIMITER_START+PRAGMA_SPECIES+' sync '+(sync+1).to_s+PRAGMA_DELIMITER_END))
|
250
|
+
end
|
251
|
+
|
252
|
+
# Insert the post-kernel species (end of species)
|
253
|
+
if nest.has_species?
|
254
|
+
to_print = (@options[:print_arc]) ? nest.print_arc_end : nest.print_species_end
|
255
|
+
location = nest.code
|
256
|
+
location.insert_next(C::StringLiteral.parse(to_print))
|
257
|
+
end
|
258
|
+
end
|
259
|
+
end
|
260
|
+
|
261
|
+
# Iterate over the loop nests and insert the memory copy annotations into
|
262
|
+
# the original AST.
|
263
|
+
def insert_copies(scop_ast)
|
264
|
+
@nests.each do |nest|
|
265
|
+
if nest.has_copyins?
|
266
|
+
nest.code.insert_prev(C::StringLiteral.parse(nest.print_copyins))
|
267
|
+
end
|
268
|
+
if nest.has_copyouts?
|
269
|
+
nest.code.insert_next(C::StringLiteral.parse(nest.print_copyouts))
|
270
|
+
end
|
271
|
+
end
|
272
|
+
end
|
273
|
+
|
274
|
+
end
|
275
|
+
|
276
|
+
end
|
277
|
+
|