bones-compiler 1.1.0 → 1.3.1

data/test/examples/neighbourhood/example05_species.c

@@ -0,0 +1,48 @@
+//
+// This file is part of the Bones source-to-source compiler examples. This C-code
+// example is meant to illustrate the use of Bones. For more information on Bones
+// use the contact information below.
+//
+// == More information on Bones
+// Contact............Cedric Nugteren <c.nugteren@tue.nl>
+// Web address........http://parse.ele.tue.nl/bones/
+//
+// == File information
+// Filename...........neighbourhood/example05.c
+// Author.............Cedric Nugteren
+// Last modified on...07-May-2013
+//
+
+#include <stdio.h>
+
+// This is 'example05', an unrolled one-sided neighbourhood
+int main(void) {
+	int i;
+	int N = 256;
+	
+	// Declare input/output arrays
+	int A[N];
+	int B[N];
+	
+	// Set the input data
+	for(i=0;i<N;i++) {
+		A[i] = i;
+		B[i] = i+5;
+	}
+	
+	// Perform the computation
+	#pragma scop
+	{
+		#pragma species kernel A[2:N]|neighbourhood(0:1) -> B[2:N-1]|element
+		for (i = 2; i < N; i++) {
+			B[i] = A[i] + A[i + 1];
+		}
+		#pragma species endkernel example05_k1
+	}
+	#pragma endscop
+	
+	// Clean-up and exit the function
+	fflush(stdout);
+	return 0;
+}
+

data/test/examples/shared/example01_species.c

@@ -0,0 +1,49 @@
+//
+// This file is part of the Bones source-to-source compiler examples. This C-code
+// example is meant to illustrate the use of Bones. For more information on Bones
+// use the contact information below.
+//
+// == More information on Bones
+// Contact............Cedric Nugteren <c.nugteren@tue.nl>
+// Web address........http://parse.ele.tue.nl/bones/
+//
+// == File information
+// Filename...........shared/example1.c
+// Author.............Cedric Nugteren
+// Last modified on...16-April-2012
+//
+
+#include <stdio.h>
+#include <stdlib.h>
+#define SIZE 512*1024
+
+// This is 'example1', a basic associative and commutative reduction to scalar
+int main(void) {
+	int i;
+	
+	// Declare input/output arrays
+	int *A = (int *)malloc(SIZE*sizeof(int));
+	int B[1];
+	
+	// Set the input data
+	for(i=0;i<SIZE;i++) {
+		A[i] = 1;
+	}
+	
+	// Perform the computation
+	B[0] = 0;
+	#pragma scop
+	{
+		#pragma species kernel B[0:0]|full ^ A[0:SIZE-1]|element -> B[0:0]|shared
+		for (i = 0; i < SIZE; i++) {
+			B[0] = B[0] + A[i];
+		}
+		#pragma species endkernel example01_k1
+	}
+	#pragma endscop
+	
+	// Clean-up and exit the function
+	fflush(stdout);
+	return 0;
+}
+

data/test/examples/shared/example02_species.c

@@ -0,0 +1,55 @@
+//
+// This file is part of the Bones source-to-source compiler examples. This C-code
+// example is meant to illustrate the use of Bones. For more information on Bones
+// use the contact information below.
+//
+// == More information on Bones
+// Contact............Cedric Nugteren <c.nugteren@tue.nl>
+// Web address........http://parse.ele.tue.nl/bones/
+//
+// == File information
+// Filename...........shared/example2.c
+// Author.............Cedric Nugteren
+// Last modified on...09-May-2012
+//
+
+#include <stdio.h>
+
+// This is 'example2', demonstrating a 3D input reduction to scalar
+int main(void) {
+	int a,b,c;
+	
+	// Declare input/output arrays
+	float in[8][16][32];
+	float out[1];
+	
+	// Set the input data
+	for(a=0;a<8;a++) {
+		for(b=0;b<16;b++) {
+			for(c=0;c<32;c++) {
+				in[a][b][c] = 1;
+			}
+		}
+	}
+	
+	// Perform the computation
+	out[0] = 0;
+	#pragma scop
+	{
+		#pragma species kernel out[0:0]|full ^ in[0:7,0:15,0:31]|element -> out[0:0]|shared
+		for (a = 0; a < 8; a++) {
+			for (b = 0; b < 16; b++) {
+				for (c = 0; c < 32; c++) {
+					out[0] = out[0] + in[a][b][c];
+				}
+			}
+		}
+		#pragma species endkernel example02_k1
+	}
+	#pragma endscop
+	
+	// Clean-up and exit the function
+	fflush(stdout);
+	return 0;
+}
+

data/test/examples/shared/example03_species.c

@@ -0,0 +1,59 @@
+//
+// This file is part of the Bones source-to-source compiler examples. This C-code
+// example is meant to illustrate the use of Bones. For more information on Bones
+// use the contact information below.
+//
+// == More information on Bones
+// Contact............Cedric Nugteren <c.nugteren@tue.nl>
+// Web address........http://parse.ele.tue.nl/bones/
+//
+// == File information
+// Filename...........shared/example3.c
+// Author.............Cedric Nugteren
+// Last modified on...16-April-2012
+//
+
+#include <stdio.h>
+#include <stdlib.h>
+#define SIZE 1024
+
+// This is 'example3', demonstrating a reduction to a 2D array
+int main(void) {
+	int i,p,q;
+	int index1,index2;
+	
+	// Declare input/output arrays
+	int *in = (int *)malloc(SIZE*sizeof(int));
+	int B[20][10];
+	
+	// Set the input data
+	for(i=0;i<SIZE;i++) {
+		in[i] = (SIZE-i);
+	}
+	
+	// Set the output to zero before starting
+	for(p=0;p<20;p++) {
+		for(q=0;q<10;q++) {
+			B[p][q] = 0;
+		}
+	}
+	
+	// Perform the computation
+	#pragma scop
+	{
+		#pragma species kernel in[0:SIZE-1]|element ^ B[0:19,0:9]|full -> B[0:19,0:9]|shared
+		for (i = 0; i < SIZE; i++) {
+			index1 = in[i] % 20;
+			index2 = in[i] % 10;
+			B[index1][index2] = B[index1][index2] + 1;
+		}
+		#pragma species endkernel example03_k1
+	}
+	#pragma endscop
+	
+	// Clean-up and exit the function
+	free(in);
+	fflush(stdout);
+	return 0;
+}
+

data/test/examples/shared/example04_species.c

@@ -0,0 +1,56 @@
+//
+// This file is part of the Bones source-to-source compiler examples. This C-code
+// example is meant to illustrate the use of Bones. For more information on Bones
+// use the contact information below.
+//
+// == More information on Bones
+// Contact............Cedric Nugteren <c.nugteren@tue.nl>
+// Web address........http://parse.ele.tue.nl/bones/
+//
+// == File information
+// Filename...........shared/example4.c
+// Author.............Cedric Nugteren
+// Last modified on...16-April-2012
+//
+
+#include <stdio.h>
+#include <stdlib.h>
+#define SIZE 1024*1024
+
+// This is 'example4', demonstrating a basic 256-bin histogram computation
+int main(void) {
+	int i;
+	unsigned char index;
+	
+	// Declare input/output arrays
+	unsigned char *A = (unsigned char *)malloc(SIZE*sizeof(unsigned char));
+	int B[256];
+	
+	// Set the input data
+	for(i=0;i<SIZE;i++) {
+		A[i] = i%256;
+	}
+	
+	// Set the output to zero before starting
+	for (i=0;i<256;i++) {
+		B[i] = 0;
+	}
+	
+	// Perform the computation
+	#pragma scop
+	{
+		#pragma species kernel A[0:SIZE-1]|element ^ B[0:255]|full -> B[0:255]|shared
+		for (i = 0; i < SIZE; i++) {
+			index = A[i];
+			B[index]++;
+		}
+		#pragma species endkernel example04_k1
+	}
+	#pragma endscop
+	
+	// Clean-up and exit the function
+	free(A);
+	fflush(stdout);
+	return 0;
+}
+

data/test/examples/shared/example05_species.c

@@ -0,0 +1,52 @@
+//
+// This file is part of the Bones source-to-source compiler examples. This C-code
+// example is meant to illustrate the use of Bones. For more information on Bones
+// use the contact information below.
+//
+// == More information on Bones
+// Contact............Cedric Nugteren <c.nugteren@tue.nl>
+// Web address........http://parse.ele.tue.nl/bones/
+//
+// == File information
+// Filename...........shared/example5.c
+// Author.............Cedric Nugteren
+// Last modified on...07-May-2012
+//
+
+#include <stdio.h>
+
+// This is 'example5', demonstrating an inner-loop only classification of a reduction to scalar
+int main(void) {
+	int a,b,c;
+	
+	// Declare input/output arrays
+	float in[16][16];
+	float out[1];
+	
+	// Set the input data
+	out[0] = -1;
+	for(a=0;a<16;a++) {
+		for(b=0;b<16;b++) {
+			in[a][b] = 1.001;
+		}
+	}
+	
+	// Perform the computation
+	for(a=0;a<16;a++) {
+	#pragma scop
+	{
+		#pragma species kernel out[0:0]|full ^ in[a:a,0:a]|element -> out[0:0]|shared
+		for (b = 0; b <= a; b++) {
+			out[0] = out[0] - in[a][b] * in[a][b];
+		}
+		#pragma species endkernel example05_k1
+	}
+	#pragma endscop
+		out[0] = 1.002;
+	}
+	
+	// Clean-up and exit the function
+	fflush(stdout);
+	return 0;
+}
+

metadata

@@ -1,20 +1,18 @@
 --- !ruby/object:Gem::Specification
 name: bones-compiler
 version: !ruby/object:Gem::Version
-  version: 1.1.0
-  prerelease: 
+  version: 1.3.1
 platform: ruby
 authors:
 - Cedric Nugteren
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-08-07 00:00:00.000000000 Z
+date: 2013-10-30 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rake
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ! '>='
       - !ruby/object:Gem::Version
@@ -22,7 +20,6 @@ dependencies:
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ! '>='
       - !ruby/object:Gem::Version
@@ -30,7 +27,6 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: trollop
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ! '>='
       - !ruby/object:Gem::Version
@@ -38,7 +34,6 @@ dependencies:
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ! '>='
       - !ruby/object:Gem::Version
@@ -46,7 +41,6 @@ dependencies:
 - !ruby/object:Gem::Dependency
   name: cast
   requirement: !ruby/object:Gem::Requirement
-    none: false
     requirements:
     - - ! '>='
       - !ruby/object:Gem::Version
@@ -54,92 +48,141 @@ dependencies:
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
-    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: symbolic
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - ! '>='
       - !ruby/object:Gem::Version
         version: '0'
 description: Bones is a source-to-source compiler based on algorithmic skeletons and
-  algorithmic species. It takes C code as input (annotated with species information),
-  and generates parallel code in languages such as CUDA, OpenCL, and OpenMP. The generated
-  code is to be executed on a GPU or a multi-core CPU.
+  algorithmic species. It takes C code as input (annotated with species information
+  by A-Darwin), and generates parallel code in languages such as CUDA, OpenCL, and
+  OpenMP. The generated code can be executed on a GPU or a multi-core CPU.
 email: c.nugteren@tue.nl
 executables:
 - bones
+- adarwin
 extensions: []
 extra_rdoc_files:
 - README.rdoc
 files:
 - Rakefile
+- bin/adarwin
 - bin/bones
 - examples/applications/ffos.c
-- examples/element/example5.c
-- examples/element/example8.c
+- examples/element/example06.c
 - examples/element/example12.c
-- examples/element/example3.c
-- examples/element/example7.c
-- examples/element/example9.c
-- examples/element/example6.c
-- examples/element/example1.c
-- examples/element/example2.c
+- examples/element/example13.c
+- examples/element/example04.c
+- examples/element/example02.c
+- examples/element/example07.c
+- examples/element/example08.c
+- examples/element/example09.c
+- examples/element/example05.c
+- examples/element/example03.c
 - examples/element/example10.c
+- examples/element/example01.c
 - examples/element/example11.c
-- examples/element/example4.c
-- examples/chunk/example5.c
-- examples/chunk/example3.c
-- examples/chunk/example1.c
-- examples/chunk/example2.c
-- examples/chunk/example4.c
-- examples/neighbourhood/example3.c
-- examples/neighbourhood/example1.c
-- examples/neighbourhood/example2.c
-- examples/neighbourhood/example4.c
-- examples/shared/example5.c
-- examples/shared/example3.c
-- examples/shared/example1.c
-- examples/shared/example2.c
-- examples/shared/example4.c
-- examples/benchmarks/saxpy.c
-- examples/benchmarks/trisolv.c
-- examples/benchmarks/gemm.c
-- examples/benchmarks/covariance.c
-- examples/benchmarks/gramschmidt.c
-- examples/benchmarks/gemver.c
-- examples/benchmarks/fdtd-2d.c
-- examples/benchmarks/gesummv.c
-- examples/benchmarks/cholesky.c
-- examples/benchmarks/fdtd-2d-apml.c
-- examples/benchmarks/dynprog.c
-- examples/benchmarks/seidel-2d.c
-- examples/benchmarks/syrk.c
-- examples/benchmarks/mvt.c
-- examples/benchmarks/bicg.c
-- examples/benchmarks/adi.c
-- examples/benchmarks/3mm.c
-- examples/benchmarks/syr2k.c
-- examples/benchmarks/common.h
-- examples/benchmarks/trmm.c
-- examples/benchmarks/atax.c
-- examples/benchmarks/reg_detect.c
-- examples/benchmarks/2mm.c
-- examples/benchmarks/ludcmp.c
-- examples/benchmarks/jacobi-2d-imper.c
-- examples/benchmarks/symm.c
-- examples/benchmarks/overview.txt
-- examples/benchmarks/correlation.c
-- examples/benchmarks/floyd-warshall.c
-- examples/benchmarks/lu.c
-- examples/benchmarks/durbin.c
-- examples/benchmarks/doitgen.c
-- examples/benchmarks/jacobi-1d-imper.c
-- lib/castaddon/node.rb
+- examples/chunk/example06.c
+- examples/chunk/example04.c
+- examples/chunk/example02.c
+- examples/chunk/example07.c
+- examples/chunk/example05.c
+- examples/chunk/example03.c
+- examples/chunk/example01.c
+- examples/neighbourhood/example04.c
+- examples/neighbourhood/example02.c
+- examples/neighbourhood/example05.c
+- examples/neighbourhood/example03.c
+- examples/neighbourhood/example01.c
+- examples/shared/example04.c
+- examples/shared/example02.c
+- examples/shared/example05.c
+- examples/shared/example03.c
+- examples/shared/example01.c
+- examples/benchmarks/PolyBench/trisolv.c
+- examples/benchmarks/PolyBench/gemm.c
+- examples/benchmarks/PolyBench/covariance.c
+- examples/benchmarks/PolyBench/gramschmidt.c
+- examples/benchmarks/PolyBench/gemver.c
+- examples/benchmarks/PolyBench/fdtd-2d.c
+- examples/benchmarks/PolyBench/gesummv.c
+- examples/benchmarks/PolyBench/cholesky.c
+- examples/benchmarks/PolyBench/fdtd-2d-apml.c
+- examples/benchmarks/PolyBench/dynprog.c
+- examples/benchmarks/PolyBench/seidel-2d.c
+- examples/benchmarks/PolyBench/syrk.c
+- examples/benchmarks/PolyBench/mvt.c
+- examples/benchmarks/PolyBench/bicg.c
+- examples/benchmarks/PolyBench/adi.c
+- examples/benchmarks/PolyBench/3mm.c
+- examples/benchmarks/PolyBench/syr2k.c
+- examples/benchmarks/PolyBench/common.h
+- examples/benchmarks/PolyBench/trmm.c
+- examples/benchmarks/PolyBench/atax.c
+- examples/benchmarks/PolyBench/reg_detect.c
+- examples/benchmarks/PolyBench/2mm.c
+- examples/benchmarks/PolyBench/ludcmp.c
+- examples/benchmarks/PolyBench/jacobi-2d-imper.c
+- examples/benchmarks/PolyBench/symm.c
+- examples/benchmarks/PolyBench/correlation.c
+- examples/benchmarks/PolyBench/floyd-warshall.c
+- examples/benchmarks/PolyBench/lu.c
+- examples/benchmarks/PolyBench/durbin.c
+- examples/benchmarks/PolyBench/doitgen.c
+- examples/benchmarks/PolyBench/jacobi-1d-imper.c
+- examples/benchmarks/Rodinia/hotspot.c
+- examples/benchmarks/Rodinia/srad.c
+- examples/benchmarks/Rodinia/kmeans.c
+- examples/benchmarks/Rodinia/cfd.c
+- examples/benchmarks/other/saxpy.c
+- examples/benchmarks/other/dct.c
+- examples/benchmarks/other/mm.c
+- examples/benchmarks/other/common.h
+- examples/fusion/example04.c
+- examples/fusion/example02.c
+- examples/fusion/example05.c
+- examples/fusion/example03.c
+- examples/fusion/example01.c
+- examples/dependences/example04.c
+- examples/dependences/example02.c
+- examples/dependences/example05.c
+- examples/dependences/example03.c
+- examples/dependences/example01.c
+- lib/adarwin/reference.rb
+- lib/adarwin/fusion.rb
+- lib/adarwin/interval.rb
+- lib/adarwin/preprocessor.rb
+- lib/adarwin/memorycopies.rb
+- lib/adarwin/engine.rb
+- lib/adarwin/nest.rb
+- lib/adarwin/dependences.rb
+- lib/common.rb
+- lib/castaddon/transformations.rb
+- lib/castaddon/node_bones.rb
+- lib/castaddon/node_adarwin.rb
+- lib/castaddon/node_common.rb
 - lib/castaddon/index.rb
 - lib/castaddon/type.rb
+- lib/adarwin.rb
 - lib/castaddon.rb
 - lib/bones.rb
 - lib/bones/variablelist.rb
 - lib/bones/structure.rb
 - lib/bones/preprocessor.rb
+- lib/bones/copy.rb
 - lib/bones/engine.rb
 - lib/bones/variable.rb
 - lib/bones/algorithm.rb
@@ -158,9 +201,11 @@ files:
 - skeletons/CPU-OPENMP/common/prologue.c
 - skeletons/CPU-OPENMP/common/mem_copy_H2D.c
 - skeletons/CPU-OPENMP/common/mem_copy_D2H.c
+- skeletons/CPU-OPENMP/common/timer_globals.c
 - skeletons/CPU-OPENMP/common/globals_kernel.c
 - skeletons/CPU-OPENMP/common/timer_2_stop.c
 - skeletons/CPU-OPENMP/common/timer_1_stop.c
+- skeletons/CPU-OPENMP/common/mem_global.c
 - skeletons/CPU-OPENMP/common/timer_2_start.c
 - skeletons/CPU-OPENMP/common/timer_1_start.c
 - skeletons/CPU-OPENMP/common/mem_epilogue.c
@@ -176,9 +221,11 @@ files:
 - skeletons/CPU-OPENCL-INTEL/common/prologue.c
 - skeletons/CPU-OPENCL-INTEL/common/mem_copy_H2D.c
 - skeletons/CPU-OPENCL-INTEL/common/mem_copy_D2H.c
+- skeletons/CPU-OPENCL-INTEL/common/timer_globals.c
 - skeletons/CPU-OPENCL-INTEL/common/globals_kernel.c
 - skeletons/CPU-OPENCL-INTEL/common/timer_2_stop.c
 - skeletons/CPU-OPENCL-INTEL/common/timer_1_stop.c
+- skeletons/CPU-OPENCL-INTEL/common/mem_global.c
 - skeletons/CPU-OPENCL-INTEL/common/timer_2_start.c
 - skeletons/CPU-OPENCL-INTEL/common/timer_1_start.c
 - skeletons/CPU-OPENCL-INTEL/common/mem_epilogue.c
@@ -228,9 +275,11 @@ files:
 - skeletons/CPU-C/common/prologue.c
 - skeletons/CPU-C/common/mem_copy_H2D.c
 - skeletons/CPU-C/common/mem_copy_D2H.c
+- skeletons/CPU-C/common/timer_globals.c
 - skeletons/CPU-C/common/globals_kernel.c
 - skeletons/CPU-C/common/timer_2_stop.c
 - skeletons/CPU-C/common/timer_1_stop.c
+- skeletons/CPU-C/common/mem_global.c
 - skeletons/CPU-C/common/timer_2_start.c
 - skeletons/CPU-C/common/timer_1_start.c
 - skeletons/CPU-C/common/mem_epilogue.c
@@ -250,14 +299,21 @@ files:
 - skeletons/GPU-CUDA/kernel/D-element-to-1-shared.host.c
 - skeletons/GPU-CUDA/skeletons.txt
 - skeletons/GPU-CUDA/common/globals.c
+- skeletons/GPU-CUDA/common/mem_async_copyout.c
 - skeletons/GPU-CUDA/common/epilogue.c
 - skeletons/GPU-CUDA/common/prologue.c
 - skeletons/GPU-CUDA/common/mem_copy_H2D.c
+- skeletons/GPU-CUDA/common/mem_async_copyin.c
 - skeletons/GPU-CUDA/common/mem_copy_D2H.c
+- skeletons/GPU-CUDA/common/timer_globals.c
 - skeletons/GPU-CUDA/common/globals_kernel.c
+- skeletons/GPU-CUDA/common/scheduler.c
 - skeletons/GPU-CUDA/common/timer_2_stop.c
 - skeletons/GPU-CUDA/common/timer_1_stop.c
+- skeletons/GPU-CUDA/common/mem_global.c
 - skeletons/GPU-CUDA/common/timer_2_start.c
+- skeletons/GPU-CUDA/common/mem_async_free.c
+- skeletons/GPU-CUDA/common/mem_async_alloc.c
 - skeletons/GPU-CUDA/common/timer_1_start.c
 - skeletons/GPU-CUDA/common/mem_epilogue.c
 - skeletons/GPU-CUDA/common/header.c
@@ -268,6 +324,71 @@ files:
 - test/bones/test_common.rb
 - test/bones/test_algorithm.rb
 - test/bones/test_variable.rb
+- test/examples/element/example08_species.c
+- test/examples/element/example04_species.c
+- test/examples/element/example07_species.c
+- test/examples/element/example06_species.c
+- test/examples/element/example09_species.c
+- test/examples/element/example02_species.c
+- test/examples/element/example05_species.c
+- test/examples/element/example03_species.c
+- test/examples/element/example10_species.c
+- test/examples/element/example11_species.c
+- test/examples/element/example13_species.c
+- test/examples/element/example12_species.c
+- test/examples/element/example01_species.c
+- test/examples/chunk/example04_species.c
+- test/examples/chunk/example07_species.c
+- test/examples/chunk/example06_species.c
+- test/examples/chunk/example02_species.c
+- test/examples/chunk/example05_species.c
+- test/examples/chunk/example03_species.c
+- test/examples/chunk/example01_species.c
+- test/examples/neighbourhood/example04_species.c
+- test/examples/neighbourhood/example02_species.c
+- test/examples/neighbourhood/example05_species.c
+- test/examples/neighbourhood/example03_species.c
+- test/examples/neighbourhood/example01_species.c
+- test/examples/shared/example04_species.c
+- test/examples/shared/example02_species.c
+- test/examples/shared/example05_species.c
+- test/examples/shared/example03_species.c
+- test/examples/shared/example01_species.c
+- test/examples/benchmarks/PolyBench/gesummv_species.c
+- test/examples/benchmarks/PolyBench/durbin_species.c
+- test/examples/benchmarks/PolyBench/cholesky_species.c
+- test/examples/benchmarks/PolyBench/seidel-2d_species.c
+- test/examples/benchmarks/PolyBench/fdtd-2d-apml_species.c
+- test/examples/benchmarks/PolyBench/trmm_species.c
+- test/examples/benchmarks/PolyBench/syrk_species.c
+- test/examples/benchmarks/PolyBench/trisolv_species.c
+- test/examples/benchmarks/PolyBench/jacobi-1d-imper_species.c
+- test/examples/benchmarks/PolyBench/gramschmidt_species.c
+- test/examples/benchmarks/PolyBench/fdtd-2d_species.c
+- test/examples/benchmarks/PolyBench/atax_species.c
+- test/examples/benchmarks/PolyBench/mvt_species.c
+- test/examples/benchmarks/PolyBench/covariance_species.c
+- test/examples/benchmarks/PolyBench/3mm_species.c
+- test/examples/benchmarks/PolyBench/adi_species.c
+- test/examples/benchmarks/PolyBench/doitgen_species.c
+- test/examples/benchmarks/PolyBench/ludcmp_species.c
+- test/examples/benchmarks/PolyBench/gemm_species.c
+- test/examples/benchmarks/PolyBench/2mm_species.c
+- test/examples/benchmarks/PolyBench/reg_detect_species.c
+- test/examples/benchmarks/PolyBench/syr2k_species.c
+- test/examples/benchmarks/PolyBench/symm_species.c
+- test/examples/benchmarks/PolyBench/dynprog_species.c
+- test/examples/benchmarks/PolyBench/jacobi-2d-imper_species.c
+- test/examples/benchmarks/PolyBench/bicg_species.c
+- test/examples/benchmarks/PolyBench/correlation_species.c
+- test/examples/benchmarks/PolyBench/gemver_species.c
+- test/examples/benchmarks/PolyBench/lu_species.c
+- test/examples/benchmarks/PolyBench/floyd-warshall_species.c
+- test/examples/dependences/example04_species.c
+- test/examples/dependences/example02_species.c
+- test/examples/dependences/example05_species.c
+- test/examples/dependences/example03_species.c
+- test/examples/dependences/example01_species.c
 - README.rdoc
 - LICENSE
 - CHANGELOG
@@ -275,6 +396,7 @@ files:
 homepage: http://parse.ele.tue.nl/bones/
 licenses:
 - LICENSE
+metadata: {}
 post_install_message: 
 rdoc_options:
 - --title
@@ -283,21 +405,19 @@ rdoc_options:
 require_paths:
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
   - - ! '>='
     - !ruby/object:Gem::Version
       version: '0'
 required_rubygems_version: !ruby/object:Gem::Requirement
-  none: false
   requirements:
   - - ! '>='
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 1.8.24
+rubygems_version: 2.1.10
 signing_key: 
-specification_version: 3
+specification_version: 4
 summary: The Bones source-to-source compiler
 test_files: []