bolognese 2.3.6 → 2.3.9

data/spec/writers/schema_org_writer_spec.rb

@@ -1,426 +0,0 @@
-# frozen_string_literal: true
-
-require 'spec_helper'
-
-describe Bolognese::Metadata, vcr: true do
-  context "write metadata as schema_org" do
-    it "journal article" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.7554/elife.01567")
-      expect(json["@type"]).to eq("ScholarlyArticle")
-      expect(json["isPartOf"]).to eq("@type"=>"Periodical", "issn"=>"2050-084X")
-      expect(json["periodical"]).to eq("@type"=>"Journal", "firstPage" => "e01567", "identifier"=>"2050-084X", "identifierType"=>"ISSN", "name"=>"eLife", "volume"=>"3")
-      expect(json["citation"].length).to eq(26)
-      expect(json["citation"].first).to eq("@id"=>"https://doi.org/10.1038/nature02100", "@type"=>"CreativeWork")
-      expect(json["funder"]).to eq([{"name"=>"SystemsX", "@type"=>"Organization"},
-                                     {"name"=>"EMBO",
-                                      "@type"=>"Organization",
-                                      "@id"=>"https://doi.org/10.13039/501100003043"},
-                                     {"name"=>"Swiss National Science Foundation",
-                                      "@type"=>"Organization",
-                                      "@id"=>"https://doi.org/10.13039/501100001711"},
-                                     {"name"=>"University of Lausanne",
-                                      "@type"=>"Organization",
-                                      "@id"=>"https://doi.org/10.13039/501100006390"}])
-      expect(json["license"]).to eq("https://creativecommons.org/licenses/by/3.0/legalcode")
-    end
-
-    it "maremma schema.org JSON" do
-      input = "https://github.com/datacite/maremma"
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5438/qeg0-3gm3")
-      expect(json["@type"]).to eq("SoftwareSourceCode")
-      expect(json["name"]).to eq("Maremma: a Ruby library for simplified network calls")
-      expect(json["author"]).to eq("name"=>"Martin Fenner", "givenName"=>"Martin", "familyName"=>"Fenner", "@type"=>"Person", "@id"=>"https://orcid.org/0000-0003-0077-4738", "affiliation" => {"@type"=>"Organization", "name"=>"DataCite"})
-    end
-
-    it "Schema.org JSON" do
-      input = "https://doi.org/10.5281/ZENODO.48440"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5281/zenodo.48440")
-      expect(json["@type"]).to eq("SoftwareSourceCode")
-      expect(json["name"]).to eq("Analysis Tools For Crossover Experiment Of Ui Using Choice Architecture")
-      expect(json["license"]).to eq(["https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode", "info:eu-repo/semantics/openAccess"])
-    end
-
-    it "Schema.org JSON isReferencedBy" do
-      input = "https://doi.org/10.5061/DRYAD.8515"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5061/dryad.8515")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["citation"]).to eq("@id"=>"https://doi.org/10.1371/journal.ppat.1000446", "@type"=>"CreativeWork")
-      expect(json["license"]).to eq("https://creativecommons.org/publicdomain/zero/1.0/legalcode")
-      expect(json["keywords"]).to eq("Plasmodium, malaria, taxonomy, mitochondrial genome, Parasites")
-    end
-
-    it "Schema.org JSON IsSupplementTo" do
-      input = "https://doi.org/10.5517/CC8H01S"
-      subject = Bolognese::Metadata.new(input: input)
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5517/cc8h01s")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["@reverse"]).to eq("isBasedOn"=>{"@id"=>"https://doi.org/10.1107/s1600536804021154", "@type"=>"ScholarlyArticle"})
-    end
-
-    it "Schema.org JSON Cyark" do
-      input = "https://doi.org/10.26301/jgf3-jm06"
-      subject = Bolognese::Metadata.new(input: input)
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.26301/jgf3-jm06")
-      expect(json["@type"]).to eq("Dataset")
-    end
-
-    it "rdataone" do
-      input = fixture_path + 'codemeta.json'
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5063/f1m61h5x")
-      expect(json["@type"]).to eq("SoftwareSourceCode")
-      expect(json["name"]).to eq("R Interface to the DataONE REST API")
-      expect(json["author"]).to eq([{"name"=>"Matt Jones",
-                                     "givenName"=>"Matt",
-                                     "familyName"=>"Jones",
-                                     "@type"=>"Person",
-                                     "@id"=>"https://orcid.org/0000-0003-0077-4738",
-                                     "affiliation"=>{"@type"=>"Organization", "name"=>"NCEAS"}},
-                                    {"name"=>"Peter Slaughter",
-                                     "givenName"=>"Peter",
-                                     "familyName"=>"Slaughter",
-                                     "@type"=>"Person",
-                                     "@id"=>"https://orcid.org/0000-0002-2192-403X",
-                                     "affiliation"=>{"@type"=>"Organization", "name"=>"NCEAS"}},
-                                    {"name"=>"University of California, Santa Barbara", "@type"=>"Organization"}])
-      expect(json["version"]).to eq("2.0.0")
-      expect(json["keywords"]).to eq("data sharing, data repository, DataONE")
-    end
-
-    it "Funding" do
-      input = "https://doi.org/10.5438/6423"
-      subject = Bolognese::Metadata.new(input: input)
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5438/6423")
-      expect(json["@type"]).to eq("Collection")
-      expect(json["hasPart"].length).to eq(25)
-      expect(json["hasPart"].first).to eq("@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5281/zenodo.30799")
-      expect(json["funder"]).to eq("@id"=>"https://doi.org/10.13039/501100000780", "@type"=>"Organization", "name"=>"European Commission")
-      expect(json["license"]).to eq("https://creativecommons.org/licenses/by/4.0/legalcode")
-    end
-
-    it "Funding OpenAIRE" do
-      input = "https://doi.org/10.5281/ZENODO.1239"
-      subject = Bolognese::Metadata.new(input: input)
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5281/zenodo.1239")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["funder"]).to eq("@id"=>"https://doi.org/10.13039/501100000780", "@type"=>"Organization", "name"=>"European Commission")
-      expect(json["license"]).to eq(["https://creativecommons.org/publicdomain/zero/1.0/legalcode", "info:eu-repo/semantics/openAccess"])
-    end
-
-    it "subject scheme" do
-      input = "https://doi.org/10.4232/1.2745"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.4232/1.2745")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["name"]).to eq("Flash Eurobarometer 54 (Madrid Summit)")
-      expect(json["keywords"]).to eq("KAT12 International Institutions, Relations, Conditions, Internationale Politik und Institutionen, Regierung, politische Systeme, Parteien und Verbände, Wirtschaftssysteme und wirtschaftliche Entwicklung, International politics and organisation, Government, political systems and organisation, Economic systems and development")
-    end
-
-    it "subject scheme multiple keywords" do
-      input = "https://doi.org/10.1594/pangaea.721193"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.1594/pangaea.721193")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["name"]).to eq("Seawater carbonate chemistry and processes during experiments with Crassostrea gigas, 2007, supplement to: Kurihara, Haruko; Kato, Shoji; Ishimatsu, Atsushi (2007): Effects of increased seawater pCO2 on early development of the oyster Crassostrea gigas. Aquatic Biology, 1(1), 91-98")
-      expect(json["keywords"]).to include("Animalia, Bottles or small containers/Aquaria (<20 L)")
-      expect(json["license"]).to eq("https://creativecommons.org/licenses/by/3.0/legalcode")
-    end
-
-    it "author is organization" do
-      input = fixture_path + 'gtex.xml'
-      url = "https://ors.datacite.org/doi:/10.25491/9hx8-ke93"
-      content_url = "https://storage.googleapis.com/gtex_analysis_v7/single_tissue_eqtl_data/GTEx_Analysis_v7_eQTL_expression_matrices.tar.gz"
-      subject = Bolognese::Metadata.new(input: input, url: url, content_url: content_url, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.25491/9hx8-ke93")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["author"]).to eq("@type"=>"Organization", "name"=>"The GTEx Consortium")
-      expect(json["url"]).to eq("https://ors.datacite.org/doi:/10.25491/9hx8-ke93")
-      expect(json["encodingFormat"]).to eq("application/tar")
-      expect(json["contentSize"]).to eq("15.7M")
-      expect(json["contentUrl"]).to eq("https://storage.googleapis.com/gtex_analysis_v7/single_tissue_eqtl_data/GTEx_Analysis_v7_eQTL_expression_matrices.tar.gz")
-      expect(json["includedInDataCatalog"]).to eq("@id"=>"https://www.ebi.ac.uk/miriam/main/datatypes/MIR:00000663", "@type"=>"DataCatalog", "name"=>"GTEx")
-      expect(json["@reverse"]).to eq("isBasedOn"=>{"@id"=>"https://doi.org/10.1038/nmeth.4407", "@type"=>"ScholarlyArticle"})
-    end
-
-    it "series information" do
-      input = "10.4229/23RDEUPVSEC2008-5CO.8.3"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.4229/23rdeupvsec2008-5co.8.3")
-      expect(json["@type"]).to eq("ScholarlyArticle")
-      expect(json["name"]).to eq("Rural Electrification With Hybrid Power Systems Based on Renewables - Technical System Configurations From the Point of View of the European Industry")
-      expect(json["author"].count).to eq(3)
-      expect(json["author"].first).to eq("@type"=>"Person", "name"=>"P. Llamas", "givenName"=>"P.", "familyName"=>"Llamas")
-      expect(json["periodical"]).to eq("@type"=>"Series", "firstPage"=>"Spain; 3353", "lastPage"=>"3356", "name"=>"23rd European Photovoltaic Solar Energy Conference and Exhibition", "volume"=>"1-5 September 2008")
-    end
-
-    it "data catalog" do
-      input = "10.25491/8KMC-G314"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.25491/8kmc-g314")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["name"]).to eq("Covariates used in eQTL analysis. Includes genotyping principal components and PEER factors")
-      expect(json["author"]).to eq("@type"=>"Organization", "name"=>"The GTEx Consortium")
-      expect(json["includedInDataCatalog"]).to eq("@type"=>"DataCatalog", "name"=>"GTEx")
-      expect(json["identifier"]).to eq("@type"=>"PropertyValue", "propertyID"=>"md5", "value"=>"c7c89fe7366d50cd75448aa603c9de58")
-      expect(json["contentUrl"]).to eq("https://storage.googleapis.com/gtex_analysis_v7/single_tissue_eqtl_data/GTEx_Analysis_v7_eQTL_covariates.tar.gz")
-    end
-
-    it "alternate identifiers" do
-      input = "10.23725/8na3-9s47"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.23725/8na3-9s47")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["name"]).to eq("NWD165827.recab.cram")
-      expect(json["author"]).to eq("name"=>"TOPMed")
-      expect(json["includedInDataCatalog"]).to be_nil
-      expect(json["identifier"]).to eq(
-        [{"@type"=>"PropertyValue",
-          "propertyID"=>"minid",
-          "value"=>"ark:/99999/fk41CrU4eszeLUDe"},
-         {"@type"=>"PropertyValue",
-          "propertyID"=>"dataguid",
-          "value"=>"dg.4503/c3d66dc9-58da-411c-83c4-dd656aa3c4b7"},
-         {"@type"=>"PropertyValue",
-          "propertyID"=>"md5",
-          "value"=>"3b33f6b9338fccab0901b7d317577ea3"}]
-      )
-      expect(json["contentUrl"]).to include("s3://cgp-commons-public/topmed_open_access/197bc047-e917-55ed-852d-d563cdbc50e4/NWD165827.recab.cram", "gs://topmed-irc-share/public/NWD165827.recab.cram")
-    end
-
-    it "affiliation identifier" do
-      input = fixture_path + 'datacite-example-affiliation.xml'
-      subject = Bolognese::Metadata.new(input: input)
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5072/example-full")
-      expect(json["@type"]).to eq("SoftwareSourceCode")
-      expect(json["name"]).to eq("Full DataCite XML Example")
-      expect(json["author"].length).to eq(3)
-      expect(json["author"].first).to eq("@id" => "https://orcid.org/0000-0001-5000-0007",
-        "@type" => "Person",
-        "affiliation" => {"@id"=>"https://ror.org/04wxnsj81", "@type"=>"Organization", "name"=>"DataCite"},
-        "familyName" => "Miller",
-        "givenName" => "Elizabeth",
-        "name" => "Elizabeth Miller")
-      expect(json["identifier"]).to eq(
-         {"@type"=>"PropertyValue",
-          "propertyID"=>"URL",
-          "value"=>"https://schema.datacite.org/meta/kernel-4.2/example/datacite-example-full-v4.2.xml"}
-      )
-      expect(json["license"]).to eq("https://creativecommons.org/publicdomain/zero/1.0/legalcode")
-    end
-
-    it "geo_location_point" do
-      input = fixture_path + 'datacite-example-geolocation-2.xml'
-      doi = "10.6071/Z7WC73"
-      subject = Bolognese::Metadata.new(input: input, doi: doi)
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.6071/z7wc73")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["name"]).to eq("Southern Sierra Critical Zone Observatory (SSCZO), Providence Creek meteorological data, soil moisture and temperature, snow depth and air temperature")
-      expect(json["author"].length).to eq(6)
-      expect(json["author"][2]).to eq("@id"=>"https://orcid.org/0000-0002-8862-1404", "@type"=>"Person", "familyName"=>"Stacy", "givenName"=>"Erin", "name"=>"Erin Stacy", "affiliation" => {"@type"=>"Organization", "name"=>"UC Merced"})
-      expect(json["includedInDataCatalog"]).to be_nil
-      expect(json["spatialCoverage"]).to eq([{"@type"=>"Place",
-        "geo"=>
-        {"@type"=>"GeoCoordinates",
-         "address"=>"Providence Creek (Lower, Upper and P301)",
-         "latitude"=>"37.047756",
-         "longitude"=>"-119.221094"}},
-        {"@type"=>"Place",
-         "geo"=>
-        {"@type"=>"GeoShape",
-         "address"=>"Providence Creek (Lower, Upper and P301)",
-         "box"=>"37.046 -119.211 37.075 -119.182"}}])
-      expect(json["license"]).to eq("https://creativecommons.org/licenses/by/4.0/legalcode")
-    end
-
-    it "geo_location_box" do
-      input = "10.1594/PANGAEA.842237"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.1594/pangaea.842237")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["name"]).to eq("Registry of all stations from the Tara Oceans Expedition (2009-2013)")
-      expect(json["author"]).to eq([{"familyName"=>"Tara Oceans Consortium",
-        "givenName"=>"Coordinators",
-        "name"=>"Coordinators Tara Oceans Consortium"},
-       {"familyName"=>"Tara Oceans Expedition",
-        "givenName"=>"Participants",
-        "name"=>"Participants Tara Oceans Expedition"}])
-      expect(json["includedInDataCatalog"]).to be_nil
-      expect(json["spatialCoverage"]).to eq("@type"=>"Place", "geo"=>{"@type"=>"GeoShape", "box"=>"-64.3088 -168.5182 79.6753 174.9006"})
-      expect(json["license"]).to eq("https://creativecommons.org/licenses/by/3.0/legalcode")
-    end
-
-    it "geo_location_polygon" do
-      input = fixture_path + 'datacite-example-polygon-v4.1.xml'
-      subject = Bolognese::Metadata.new(input: input)
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5072/example-polygon")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["name"]).to eq("Meteo measurements at the Sand Motor")
-      expect(json["author"]).to eq("@type"=>"Person", "familyName"=>"den Heijer", "givenName"=>"C", "name"=>"C den Heijer")
-      expect(json["includedInDataCatalog"]).to be_nil
-      expect(json["spatialCoverage"].dig("geo", "polygon").length).to eq(34)
-      expect(json["spatialCoverage"].dig("geo", "polygon")[0].first).to eq(["4.1738852605822", "52.03913926329928"])
-    end
-
-    it "from schema_org gtex" do
-      input = fixture_path + 'schema_org_gtex.json'
-      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.25491/d50j-3083")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["identifier"]).to eq("@type"=>"PropertyValue", "propertyID"=>"md5", "value"=>"687610993")
-      expect(json["url"]).to eq("https://ors.datacite.org/doi:/10.25491/d50j-3083")
-      expect(json["additionalType"]).to eq("Gene expression matrices")
-      expect(json["name"]).to eq("Fully processed, filtered and normalized gene expression matrices (in BED format) for each tissue, which were used as input into FastQTL for eQTL discovery")
-      expect(json["version"]).to eq("v7")
-      expect(json["author"]).to eq("@type"=>"Organization", "name"=>"The GTEx Consortium")
-      expect(json["keywords"]).to eq("gtex, annotation, phenotype, gene regulation, transcriptomics")
-      expect(json["datePublished"]).to eq("2017")
-      expect(json["contentUrl"]).to eq("https://storage.googleapis.com/gtex_analysis_v7/single_tissue_eqtl_data/GTEx_Analysis_v7_eQTL_expression_matrices.tar.gz")
-      expect(json["schemaVersion"]).to eq("http://datacite.org/schema/kernel-4")
-      expect(json["includedInDataCatalog"]).to eq("@type"=>"DataCatalog", "name"=>"GTEx")
-      expect(json["publisher"]).to eq("@type"=>"Organization", "name"=>"GTEx")
-      expect(json["funder"]).to eq([{"@id"=>"https://doi.org/10.13039/100000052",
-        "name"=>"Common Fund of the Office of the Director of the NIH",
-        "@type"=>"Organization"},
-       {"@id"=>"https://doi.org/10.13039/100000054",
-        "name"=>"National Cancer Institute (NCI)",
-        "@type"=>"Organization"},
-       {"@id"=>"https://doi.org/10.13039/100000051",
-        "name"=>"National Human Genome Research Institute (NHGRI)",
-        "@type"=>"Organization"},
-       {"@id"=>"https://doi.org/10.13039/100000050",
-        "name"=>"National Heart, Lung, and Blood Institute (NHLBI)",
-        "@type"=>"Organization"},
-       {"@id"=>"https://doi.org/10.13039/100000026",
-        "name"=>"National Institute on Drug Abuse (NIDA)",
-        "@type"=>"Organization"},
-       {"@id"=>"https://doi.org/10.13039/100000025",
-        "name"=>"National Institute of Mental Health (NIMH)",
-        "@type"=>"Organization"},
-       {"@id"=>"https://doi.org/10.13039/100000065",
-        "name"=>"National Institute of Neurological Disorders and Stroke (NINDS)",
-        "@type"=>"Organization"}])
-      expect(json["provider"]).to eq("@type"=>"Organization", "name"=>"DataCite")
-    end
-
-    it "from schema_org topmed" do
-      input = fixture_path + 'schema_org_topmed.json'
-      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.23725/8na3-9s47")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["identifier"]).to eq(
-        [{"@type"=>"PropertyValue",
-          "propertyID"=>"md5",
-          "value"=>"3b33f6b9338fccab0901b7d317577ea3"},
-         {"@type"=>"PropertyValue",
-          "propertyID"=>"minid",
-          "value"=>"ark:/99999/fk41CrU4eszeLUDe"},
-         {"@type"=>"PropertyValue",
-          "propertyID"=>"dataguid",
-          "value"=>"dg.4503/c3d66dc9-58da-411c-83c4-dd656aa3c4b7"}])
-      expect(json["url"]).to eq("https://ors.datacite.org/doi:/10.23725/8na3-9s47")
-      expect(json["additionalType"]).to eq("CRAM file")
-      expect(json["name"]).to eq("NWD165827.recab.cram")
-      expect(json["author"]).to eq("@type"=>"Organization", "name"=>"TOPMed IRC")
-      expect(json["keywords"]).to eq("topmed, whole genome sequencing")
-      expect(json["datePublished"]).to eq("2017-11-30")
-      expect(json["contentUrl"]).to eq(["s3://cgp-commons-public/topmed_open_access/197bc047-e917-55ed-852d-d563cdbc50e4/NWD165827.recab.cram", "gs://topmed-irc-share/public/NWD165827.recab.cram"])
-      expect(json["schemaVersion"]).to eq("http://datacite.org/schema/kernel-4")
-      expect(json["publisher"]).to eq("@type"=>"Organization", "name"=>"TOPMed")
-      expect(json["citation"]).to eq("@id"=>"https://doi.org/10.23725/2g4s-qv04", "@type"=>"Dataset")
-      expect(json["funder"]).to eq("@id"=>"https://doi.org/10.13039/100000050", "@type"=>"Organization", "name"=>"National Heart, Lung, and Blood Institute (NHLBI)")
-      expect(json["provider"]).to eq("@type"=>"Organization", "name"=>"DataCite")
-    end
-
-    it "interactive resource without dates" do
-      input = "https://doi.org/10.34747/g6yb-3412"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.34747/g6yb-3412")
-      expect(json["@type"]).to eq("CreativeWork")
-      expect(json["datePublished"]).to eq("2019")
-    end
-
-    it "from Schema 4.5 with publisher attributes" do
-      input = fixture_path + 'datacite-example-full-v4.5.xml'
-      subject = Bolognese::Metadata.new(input: input)
-      json = JSON.parse(subject.schema_org)
-      expect(json["publisher"]).to eq(
-         {
-          "@type" => "Organization",
-          "@id" => "https://ror.org/04z8jg394",
-          "name" => "Example Publisher"
-         }
-      )
-    end
-
-    it "from Schema 4.6 with Translator contributor, workTranslation, translationOfWork, and temporalCoverage" do
-      input = fixture_path + 'datacite-example-full-v4.6.xml'
-      subject = Bolognese::Metadata.new(input: input)
-      json = JSON.parse(subject.schema_org)
-
-      expect(json["@type"]).to eq(
-        "Project"
-      )
-      expect(json["translator"]).to eq(
-        {
-          "name" => "Jane Doe",
-          "givenName" => "Jane",
-          "familyName" => "Doe",
-          "affiliation" => {
-            "@type" => "Organization",
-            "@id" => "https://ror.org/04wxnsj81",
-            "name" => "ExampleAffiliation"
-          },
-          "contributorType" => "Translator",
-          "@type" => "Person",
-          "@id" => "https://orcid.org/0000-0003-1419-2405"
-        }
-      )
-      expect(json["workTranslation"]).to eq(
-        "@id" => "https://doi.org/10.1234/translated-version",
-        "@type" => "CreativeWork"
-      )
-      expect(json["translationOfWork"]).to eq(
-        "@id" => "https://doi.org/10.1234/other-version",
-        "@type" => "CreativeWork"
-      )
-      expect(json["temporalCoverage"]).to eq(
-        "2020-01-01"
-      )      
-    end
-
-    it "when descriptions is a dictionary" do
-      input = fixture_path + 'datacite-example-full-v4.6.xml'
-      subject = Bolognese::Metadata.new(input: input)
-      subject.descriptions = { "descriptionType" => "Abstract", "description" => "This is an abstract as a dictionary." }
-      json = JSON.parse(subject.schema_org)
-      expect(json.fetch("description")).to eq("This is an abstract as a dictionary.")
-    end
-  end
-end

data/spec/writers/turtle_writer_spec.rb

@@ -1,102 +0,0 @@
-# frozen_string_literal: true
-
-require 'spec_helper'
-
-describe Bolognese::Metadata, vcr: true do
-  context "write metadata as turtle" do
-    it "Crossref DOI" do
-      input = fixture_path + "crossref.bib"
-      subject = Bolognese::Metadata.new(input: input, from: "bibtex")
-      ttl = subject.turtle.split("\n")
-      expect(ttl[0]).to eq("@prefix schema: <http://schema.org/> .")
-      expect(ttl[2]).to eq("<https://doi.org/10.7554/elife.01567> a schema:ScholarlyArticle;")
-      publisher_line = ttl.find_index('  schema:publisher [') + 2
-      expect(ttl[publisher_line]).to eq("    schema:name \"{eLife} Sciences Organisation, Ltd.\"")
-    end
-
-    it "Dataset" do
-      input = "https://doi.org/10.5061/DRYAD.8515"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      ttl = subject.turtle.split("\n")
-      expect(ttl[0]).to eq("@prefix schema: <http://schema.org/> .")
-      expect(ttl[2]).to eq("<https://doi.org/10.5061/dryad.8515> a schema:Dataset;")
-      publisher_line = ttl.find_index('  schema:publisher [') + 2
-      expect(ttl[publisher_line]).to eq("    schema:name \"Dryad\"")
-    end
-
-    it "BlogPosting" do
-      input= "https://doi.org/10.5438/4K3M-NYVG"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      ttl = subject.turtle.split("\n")
-      expect(ttl[0]).to eq("@prefix schema: <http://schema.org/> .")
-      expect(ttl[2]).to eq("<https://doi.org/10.5438/4k3m-nyvg> a schema:ScholarlyArticle;")
-      publisher_line = ttl.find_index('  schema:publisher [') + 2
-      expect(ttl[publisher_line]).to eq("    schema:name \"DataCite\"")
-    end
-
-    it "BlogPosting Citeproc JSON" do
-      input = fixture_path + "citeproc.json"
-      subject = Bolognese::Metadata.new(input: input, from: "citeproc")
-      ttl = subject.turtle.split("\n")
-      expect(ttl[0]).to eq("@prefix schema: <http://schema.org/> .")
-      expect(ttl[2]).to eq("<https://doi.org/10.5438/4k3m-nyvg> a schema:BlogPosting;")
-      publisher_line = ttl.find_index('  schema:publisher [') + 2
-      expect(ttl[publisher_line]).to eq("    schema:name \"DataCite\"")
-    end
-
-    it "BlogPosting DataCite JSON" do
-      input = fixture_path + "datacite.json"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite_json")
-      ttl = subject.turtle.split("\n")
-      expect(ttl[0]).to eq("@prefix schema: <http://schema.org/> .")
-      expect(ttl[2]).to eq("<https://doi.org/10.5438/4k3m-nyvg> a schema:ScholarlyArticle;")
-      publisher_line = ttl.find_index('  schema:publisher [') + 2
-      expect(ttl[publisher_line]).to eq("    schema:name \"DataCite\"")
-    end
-
-    it "BlogPosting schema.org" do
-      input = "https://blog.datacite.org/eating-your-own-dog-food/"
-      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-      expect(subject.valid?).to be true
-      ttl = subject.turtle.split("\n")
-      expect(ttl[0]).to eq("@prefix schema: <http://schema.org/> .")
-      expect(ttl[2]).to eq("<https://doi.org/10.5438/4k3m-nyvg> a schema:BlogPosting;")
-      publisher_line = ttl.find_index('  schema:publisher [') + 2
-      expect(ttl[publisher_line]).to eq("    schema:name \"DataCite\"")
-    end
-
-    it "DataONE" do
-      input = fixture_path + 'codemeta.json'
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      ttl = subject.turtle.split("\n")
-      expect(ttl[0]).to eq("@prefix schema: <http://schema.org/> .")
-      expect(ttl[2]).to eq("<https://doi.org/10.5063/f1m61h5x> a schema:SoftwareSourceCode;")
-      publisher_line = ttl.find_index('  schema:publisher [') + 2
-      expect(ttl[publisher_line]).to eq("    schema:name \"https://cran.r-project.org\"")
-    end
-
-    it "journal article" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      ttl = subject.turtle.split("\n")
-      expect(ttl[0]).to eq("@prefix schema: <http://schema.org/> .")
-      expect(ttl[2]).to eq("<https://doi.org/10.7554/elife.01567> a schema:ScholarlyArticle;")
-      publisher_line = ttl.find_index('  schema:publisher [') + 2
-      expect(ttl[publisher_line]).to eq("    schema:name \"eLife Sciences Publications, Ltd\"")
-    end
-
-    it "with pages" do
-      input = "https://doi.org/10.1155/2012/291294"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      ttl = subject.turtle.split("\n")
-      expect(ttl[0]).to eq("@prefix schema: <http://schema.org/> .")
-      expect(ttl[2]).to eq("<https://doi.org/10.1155/2012/291294> a schema:ScholarlyArticle;")
-      publisher_line = ttl.find_index('  schema:publisher [') + 2
-      expect(ttl[publisher_line]).to eq("    schema:name \"Hindawi Limited\"")
-    end
-  end
-end